Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CPSF3L	54973	broad.mit.edu	37	1	1250227	1250227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1250227C>T	uc001aee.1	-	7	737	c.679G>A	c.(679-681)GAG>AAG	p.E227K	CPSF3L_uc009vjy.1_RNA|CPSF3L_uc001aef.1_Missense_Mutation_p.E233K|CPSF3L_uc009vjz.1_Missense_Mutation_p.E205K|CPSF3L_uc010nyj.1_Missense_Mutation_p.E198K|CPSF3L_uc001aeg.1_Missense_Mutation_p.E103K|CPSF3L_uc001aeh.1_Missense_Mutation_p.E126K|CPSF3L_uc001aei.1_Missense_Mutation_p.E129K|CPSF3L_uc001aej.1_Missense_Mutation_p.E54K|CPSF3L_uc001aek.1_5'UTR	NM_017871	NP_060341	Q5TA45	INT11_HUMAN	cleavage and polyadenylation specific factor	227						Golgi apparatus|nucleus	hydrolase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(86;4.35e-21)|Colorectal(212;0.000166)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.00235)|BRCA - Breast invasive adenocarcinoma(365;0.00255)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0349)|Lung(427;0.201)		TCCACGGTCTCGTGGACTTTC	0.642													22	78					0	0	1	0	0
CCNL2	81669	broad.mit.edu	37	1	1322811	1322811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1322811G>A	uc001afi.2	-	11	1395	c.1363C>T	c.(1363-1365)CCC>TCC	p.P455S	CCNL2_uc010nym.1_RNA|CCNL2_uc001aff.1_Missense_Mutation_p.P233S|CCNL2_uc001afg.1_Missense_Mutation_p.P233S|CCNL2_uc001afh.2_3'UTR|CCNL2_uc001afj.2_3'UTR|CCNL2_uc001afk.2_3'UTR	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	455					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		GGCTTCTGGGGGTACTTGCAG	0.602													9	85					0	0	1	0	0
MIB2	142678	broad.mit.edu	37	1	1560431	1560431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1560431G>A	uc001agg.2	+	6	888	c.761G>A	c.(760-762)CGG>CAG	p.R254Q	MIB2_uc001agh.2_Missense_Mutation_p.R240Q|MIB2_uc001agi.2_Missense_Mutation_p.R254Q|MIB2_uc001agj.2_Missense_Mutation_p.R95Q|MIB2_uc001agk.2_Intron|MIB2_uc001agl.1_Missense_Mutation_p.R210Q|MIB2_uc001agm.2_Intron|MIB2_uc010nyq.1_Missense_Mutation_p.R210Q|MIB2_uc009vkh.2_Missense_Mutation_p.R95Q|MIB2_uc001agn.2_5'UTR	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	254	MIB/HERC2 2.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GAGACAGGCCGGAGTGTGGCC	0.657													19	117					0	0	1	0	0
SLC35E2	9906	broad.mit.edu	37	1	1663939	1663939	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1663939G>A	uc001aib.1	-	6	1172	c.756C>T	c.(754-756)GTC>GTT	p.V252V	SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Intron|SLC35E2_uc001ahy.2_Intron|SLC35E2_uc001ahz.2_Intron|uc001aia.1_5'Flank	NM_182838	NP_878258	P0CK97	S35E2_HUMAN	solute carrier family 35, member E2	252						integral to membrane				pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGGACAAGGCGACTCGGTGCA	0.617													4	24					0	0	1	0	0
GNB1	2782	broad.mit.edu	37	1	1721867	1721867	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1721867G>A	uc001aif.2	-	9	998	c.666C>T	c.(664-666)TTC>TTT	p.F222F	GNB1_uc009vky.2_Silent_p.F122F	NM_002074	NP_002065	P62873	GBB1_HUMAN	guanine nucleotide-binding protein, beta-1	222					cellular response to glucagon stimulus|energy reserve metabolic process|muscarinic acetylcholine receptor signaling pathway|platelet activation|Ras protein signal transduction|synaptic transmission	heterotrimeric G-protein complex	GTPase activity|GTPase binding|signal transducer activity				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.62e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.14e-35)|OV - Ovarian serous cystadenocarcinoma(86;7.31e-23)|GBM - Glioblastoma multiforme(42;3.1e-07)|COAD - Colon adenocarcinoma(227;0.000323)|Colorectal(212;0.000374)|Kidney(185;0.00392)|BRCA - Breast invasive adenocarcinoma(365;0.00573)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.0482)|Lung(427;0.236)		CGTGGCCAGTGAAGGTCTGCC	0.557													10	111					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1887103	1887103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:1887103C>T	uc001aim.1	-	18	2359	c.2203G>A	c.(2203-2205)GGG>AGG	p.G735R	KIAA1751_uc009vkz.1_Intron	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	735										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CCCGCCCACCCTGGCTTGGCC	0.652													19	128					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3686406	3686406	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:3686406C>T	uc001akv.2	+	11	1884	c.1803C>T	c.(1801-1803)TCC>TCT	p.S601S	LOC388588_uc001akw.3_5'Flank	NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	601										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GGACCAAGTCCTTGGCCAACG	0.547													11	156					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3688073	3688073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:3688073G>A	uc001akv.2	+	12	2038	c.1957G>A	c.(1957-1959)GGG>AGG	p.G653R	LOC388588_uc001akw.3_5'Flank	NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	653										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		ATCCAAGAAGGGGACCTCCAA	0.612													8	85					0	0	1	0	0
KIAA0562	9731	broad.mit.edu	37	1	3753954	3753954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:3753954G>A	uc001aky.2	-	9	1380	c.1021C>T	c.(1021-1023)CTT>TTT	p.L341F	KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Missense_Mutation_p.L341F	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	341						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		TTTTCCTGAAGGAAAGGTTCT	0.478													7	44					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4772473	4772473	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:4772473C>T	uc001alm.1	+	2	924	c.543C>T	c.(541-543)ATC>ATT	p.I181I	AJAP1_uc001aln.2_Silent_p.I181I	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	181	Thr-rich.|Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CTGAGTTCATCGCCTGGGGGC	0.647													4	12					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6181208	6181208	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:6181208C>T	uc001amb.1	-	33	4969	c.4869G>A	c.(4867-4869)GAG>GAA	p.E1623E	CHD5_uc001alz.1_Silent_p.E480E|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1623					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCTCCGTCTCCTCTGGCCGCT	0.667													6	32					0	0	1	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390417	8390417	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:8390417C>T	uc001apb.2	+	4	864	c.864C>T	c.(862-864)ATC>ATT	p.I288I	SLC45A1_uc001apc.2_5'UTR	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	288	Helical; (Potential).				carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGGTCAGCATCCCTGAGAGGC	0.687													20	65					0	0	1	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390569	8390569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:8390569C>T	uc001apb.2	+	4	1016	c.1016C>T	c.(1015-1017)TCG>TTG	p.S339L	SLC45A1_uc001apc.2_Missense_Mutation_p.S37L	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	339					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		AGCCCCATCTCGCCGCCCAGC	0.692													11	44					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8420028	8420028	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:8420028G>A	uc001ape.2	-	20	4224	c.3414C>T	c.(3412-3414)GAC>GAT	p.D1138D	RERE_uc001apf.2_Silent_p.D1138D|RERE_uc001apd.2_Silent_p.D584D	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1138					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TGTAGCCCCGGTCCAGGTGTT	0.617													14	103					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9097674	9097674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:9097674C>T	uc001apo.2	-	12	1769	c.1477G>A	c.(1477-1479)GAG>AAG	p.E493K	SLC2A5_uc010nzy.1_Missense_Mutation_p.E434K|SLC2A5_uc010nzz.1_Missense_Mutation_p.E378K|SLC2A5_uc010oaa.1_Missense_Mutation_p.E449K|SLC2A5_uc010oab.1_Missense_Mutation_p.E493K	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	493	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGGAAGCTCTTTCAGTTCC	0.498													25	182					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	9211851	9211851	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:9211851G>A	uc009vmq.2	-	2	430	c.324C>T	c.(322-324)TCC>TCT	p.S108S	MIR34A_hsa-mir-34a|MI0000268_5'Flank					EF609116																		CACGGCATCCGGAGGGGACTC	0.498													15	128					0	0	1	0	0
PIK3CD	5293	broad.mit.edu	37	1	9776047	9776047	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:9776047C>T	uc001aqb.3	+	5	719	c.511C>T	c.(511-513)CTG>TTG	p.L171L	PIK3CD_uc010oaf.1_Silent_p.L171L|PIK3CD_uc001aqe.3_Silent_p.L171L	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	171					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		CCCCCTGCAGCTGGAGCCCTC	0.667													4	23					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11008832	11008832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11008832G>A	uc010oao.1	-	8	918	c.913C>T	c.(913-915)CCC>TCC	p.P305S	C1orf127_uc001arr.1_Missense_Mutation_p.P287S|C1orf127_uc001ars.1_Missense_Mutation_p.P279S	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	305										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		ACCACTCTGGGGAGAATGGAG	0.607													13	158					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11293491	11293491	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11293491G>A	uc001asd.2	-	15	2506	c.2385C>T	c.(2383-2385)ATC>ATT	p.I795I		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	795					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GGACATTATTGATCACACCTG	0.403													6	93					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11576111	11576111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11576111G>A	uc001ash.3	+	6	1780	c.1642G>A	c.(1642-1644)GAA>AAA	p.E548K	PTCHD2_uc001asi.1_Missense_Mutation_p.E548K	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	548	SSD.|Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CACCCACCTGGAAGACCCACA	0.592													11	82					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11589736	11589736	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11589736T>G	uc001ash.3	+	14	3060	c.2922T>G	c.(2920-2922)AGT>AGG	p.S974R		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	974	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCGTGCCTAGTGAGAAAGGTA	0.627													7	47					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11589929	11589929	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11589929G>A	uc001ash.3	+	15	3153	c.3015G>A	c.(3013-3015)GTG>GTA	p.V1005V		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1005	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GGCCACTAGTGGATACCGGGG	0.637													12	91					0	0	1	0	0
CLCN6	1185	broad.mit.edu	37	1	11897070	11897070	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11897070C>T	uc001ate.3	+	19	2108	c.1995C>T	c.(1993-1995)CTC>CTT	p.L665L	CLCN6_uc010oat.1_Silent_p.L381L|CLCN6_uc010oau.1_Silent_p.L643L	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	665	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGCATCCTCACCCGGGCTG	0.582													11	92					0	0	1	0	0
NPPB	4879	broad.mit.edu	37	1	11918410	11918410	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:11918410G>A	uc001atj.2	-	2	351	c.249C>T	c.(247-249)GCC>GCT	p.A83A		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein	83					body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	TGCCCTCGGTGGCTACCTCCC	0.642													4	68					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12337995	12337995	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12337995C>T	uc001atv.2	+	19	4491	c.4350C>T	c.(4348-4350)AGC>AGT	p.S1450S	VPS13D_uc001atw.2_Silent_p.S1450S|VPS13D_uc001atx.2_Silent_p.S638S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1450					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CTGAAGGAAGCCGGATGTTTT	0.483													19	135					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785393	12785393	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12785393G>A	uc009vnn.1	+	4	716	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q	AADACL3_uc001aug.1_Silent_p.Q91Q	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	161							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCCGGGCTCAGATCCTGATCT	0.537													32	154					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785598	12785599	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12785598_12785599CC>TT	uc009vnn.1	+	4	921_922	c.688_689CC>TT	c.(688-690)CCA>TTA	p.P230L	AADACL3_uc001aug.1_Missense_Mutation_p.P160L	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	230							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GTGGTTGGGCCCAGAAAACATC	0.48													6	86					0	0	1	0	0
C1orf158	93190	broad.mit.edu	37	1	12815748	12815748	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12815748G>A	uc001auh.2	+	2	426	c.210G>A	c.(208-210)GGG>GGA	p.G70G	C1orf158_uc010obe.1_Silent_p.G70G	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	70										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGGTATGGGAAGAGGAAAG	0.522													6	35					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835722	12835722	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12835722G>A	uc001aui.2	+	2	351	c.324G>A	c.(322-324)GTG>GTA	p.V108V		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	108										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGCGGAATGTGGATGAGAACT	0.527													16	252					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835800	12835800	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12835800G>A	uc001aui.2	+	2	429	c.402G>A	c.(400-402)GGG>GGA	p.G134G		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	134										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAACAGCAGGGAACTGTCCAA	0.537													19	107					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12836053	12836053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12836053C>T	uc001aui.2	+	2	682	c.655C>T	c.(655-657)CTT>TTT	p.L219F		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	219										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGTCCATTCTTATAAGGTT	0.517													13	156					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907865	12907865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12907865C>T	uc009vno.2	-	1	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G93E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	93							nucleic acid binding|nucleotide binding				0						ACCTGCGTTTCCTCGGTTCAC	0.483													6	169					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907981	12907981	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12907981G>A	uc009vno.2	-	1	257	c.162C>T	c.(160-162)TTC>TTT	p.F54F	HNRNPCL1_uc010obf.1_Silent_p.F54F	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	54							nucleic acid binding|nucleotide binding				0						CATATTGAACGAAGGCAAAGC	0.473													9	187					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921491	12921491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12921491G>A	uc001aum.1	+	4	1369	c.1282G>A	c.(1282-1284)GAG>AAG	p.E428K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	428											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCAATTGGGAGATCTTCAC	0.567													17	182					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943108	12943108	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12943108T>C	uc001aun.2	-	2	179	c.108A>G	c.(106-108)GAA>GAG	p.E36E		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	36										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGGGAAAAGTTCTGTGGGCA	0.627													18	141					0	0	1	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979775	12979775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:12979775G>A	uc001aup.2	+	4	1050	c.967G>A	c.(967-969)GAG>AAG	p.E323K		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	323	LRR 1.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAATTAAAGGAGCTGGACCT	0.577													10	179					0	0	1	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001260	13001260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:13001260C>T	uc001auq.2	-	3	509	c.423G>A	c.(421-423)ATG>ATA	p.M141I	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	141											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGTCCTCTCATCCTTGGAC	0.512													27	622					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15888703	15888703	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:15888703C>T	uc001aws.2	+	9	1341	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S	DNAJC16_uc001awr.1_Silent_p.S407S|DNAJC16_uc001awt.2_Silent_p.S95S|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	407	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		CTTTCCTGTCCTTTGCCCTGG	0.458													20	197					0	0	1	0	0
AGMAT	79814	broad.mit.edu	37	1	15905399	15905399	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:15905399C>T	uc001awv.1	-	4	818	c.675G>A	c.(673-675)CGG>CGA	p.R225R	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	225					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		TGGAAGAGCCCCGGATGCCAA	0.602													7	89					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16237594	16237594	+	Splice_Site	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16237594A>G	uc001axk.1	+	5	1247	c.1043_splice	c.e5-2	p.D348_splice	SPEN_uc010obp.1_Splice_Site_p.D307_splice	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator						interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TTGGGAATTTAGATACAAGCC	0.299													4	25					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16374434	16374434	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16374434G>A	uc001axw.3	+	5	473	c.393G>A	c.(391-393)GCG>GCA	p.A131A	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.A131A|CLCNKB_uc001axy.3_5'Flank	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	131					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGTTGGCGGGTGTGGTCT	0.582													24	123					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16458322	16458322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16458322G>A	uc001aya.1	-	14	2506	c.2369C>T	c.(2368-2370)TCC>TTC	p.S790F		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	790	Mediates interaction with ARHGEF16 and ELMO2.|Protein kinase.|Cytoplasmic (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CTTCCGGTAGGAAATGGCCTC	0.632													3	48					0	0	1	0	0
FBXO42	54455	broad.mit.edu	37	1	16577850	16577850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16577850G>A	uc001ayg.2	-	10	1685	c.1469C>T	c.(1468-1470)CCA>CTA	p.P490L	FBXO42_uc001aye.3_Missense_Mutation_p.P208L|FBXO42_uc001ayf.2_Missense_Mutation_p.P397L	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	490										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		TTTCTGATCTGGTAGTGATCC	0.473													11	64					0	0	1	0	0
NECAP2	55707	broad.mit.edu	37	1	16774457	16774457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16774457G>A	uc001ayo.2	+	3	376	c.286G>A	c.(286-288)GAA>AAA	p.E96K	NECAP2_uc001ayp.3_RNA|NECAP2_uc010ocd.1_Missense_Mutation_p.E70K|NECAP2_uc001ayq.2_Missense_Mutation_p.E96K	NM_018090	NP_060560	Q9NVZ3	NECP2_HUMAN	NECAP endocytosis associated 2 isoform 1	96					endocytosis|protein transport	clathrin vesicle coat|coated pit|plasma membrane					0		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|Kidney(64;0.000181)|KIRC - Kidney renal clear cell carcinoma(64;0.00268)|STAD - Stomach adenocarcinoma(196;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		GATCCGCATCGAAGATGGAAA	0.552													12	69					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16907245	16907245	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16907245A>T	uc009vos.1	-	16	2474	c.1586T>A	c.(1585-1587)CTC>CAC	p.L529H	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.L258H	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	529	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GCTACCTGGGAGAATGTTTAC	0.423													24	705					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16914225	16914225	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16914225G>A	uc009vos.1	-	10	1449	c.561C>T	c.(559-561)GCC>GCT	p.A187A	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	187	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTTACCTGGGGGCAGATGATT	0.438													24	537					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945546	16945546	+	RNA	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:16945546C>A	uc010ocf.1	-	4		c.611G>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GTGCCGTGTACCCATCAACTT	0.632													16	581					1.99824e-07	2.0172e-07	1	1	0
ESPNP	284729	broad.mit.edu	37	1	17046492	17046492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:17046492G>A	uc001azn.1	-	1	161	c.47C>T	c.(46-48)CCC>CTC	p.P16L		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CCTCAGGGAGGGGAAGTCTCC	0.627													7	78					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17085795	17085795	+	Silent	SNP	G	T	T	rs1057379	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:17085795G>T	uc010ock.1	-	8	1026	c.1026C>A	c.(1024-1026)ATC>ATA	p.I342I	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TACAACGCCGGATCTGGTAGC	0.687													6	32					2.17888e-05	2.19571e-05	1	1	0
PADI2	11240	broad.mit.edu	37	1	17410329	17410329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:17410329C>T	uc001baf.2	-	9	1024	c.942G>A	c.(940-942)ATG>ATA	p.M314I	PADI2_uc010ocm.1_Missense_Mutation_p.M198I|PADI2_uc001bag.1_Missense_Mutation_p.M314I	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	314					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	AATTATCCTTCATGCTGAGAA	0.527													8	88					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17559376	17559377	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:17559376_17559377CT>TA	uc001bah.1	+	11	1316_1317	c.1224_1225CT>TA	c.(1222-1227)TCCTTC>TCTATC	p.F409I	PADI1_uc010oco.1_5'Flank|PADI1_uc010ocp.1_5'Flank|PADI1_uc010ocq.1_5'Flank	NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	409					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GCCTTGACTCCTTCGGCAACCT	0.644													7	45					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17660448	17660448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:17660448C>T	uc001baj.2	+	3	312	c.284C>T	c.(283-285)TCA>TTA	p.S95L	PADI4_uc009vpc.2_Missense_Mutation_p.S95L	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	95					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GTTCAGATTTCATACTACGGA	0.368													9	61					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18554486	18554486	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:18554486G>A	uc001bau.1	+	2	548	c.165G>A	c.(163-165)CGG>CGA	p.R55R		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	55	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GGCGCATGCGGGAGATCGTGT	0.582													10	77					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809741	18809741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:18809741C>T	uc001bax.2	+	1	2318	c.2266C>T	c.(2266-2268)CCG>TCG	p.P756S	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	756						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TTTCCCGGCCCCGCAGGGCAC	0.627													26	181					0	0	1	0	0
PAX7	5081	broad.mit.edu	37	1	18961634	18961634	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:18961634G>A	uc001bay.2	+	3	949	c.351G>A	c.(349-351)AAG>AAA	p.K117K	PAX7_uc001baz.2_Silent_p.K117K|PAX7_uc010oct.1_Silent_p.K117K	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	117	Paired.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		TAGAGAAAAAGATTGAGGAGT	0.532			T	FOXO1A	alveolar rhabdomyosarcoma								16	128					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166701	19166701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:19166701G>A	uc001bba.1	-	6	1913	c.1912C>T	c.(1912-1914)CCC>TCC	p.P638S		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	638	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AAGCAGAGGGGAAAGAGGGCC	0.612													10	100					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166764	19166764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:19166764C>T	uc001bba.1	-	6	1850	c.1849G>A	c.(1849-1851)GTG>ATG	p.V617M		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	617	Helical; Name=2; (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	ACCGGGACCACCATGTATGCC	0.612													14	97					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19447896	19447896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:19447896G>A	uc001bbi.2	-	68	9932	c.9928C>T	c.(9928-9930)CTT>TTT	p.L3310F	UBR4_uc001bbk.1_Missense_Mutation_p.L957F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3310					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TCATCCACAAGGAAACTGACT	0.582													3	71					0	0	1	0	0
PLA2G2E	30814	broad.mit.edu	37	1	20246838	20246838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:20246838G>A	uc001bct.1	-	4	449	c.391C>T	c.(391-393)CCC>TCC	p.P131S		NM_014589	NP_055404	Q9NZK7	PA2GE_HUMAN	phospholipase A2, group IIE precursor	131					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|GBM - Glioblastoma multiforme(114;0.000146)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGCTTGTTGGGATAATGGGCA	0.667													10	70					0	0	1	0	0
EIF4G3	8672	broad.mit.edu	37	1	21154169	21154169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:21154169G>A	uc001bec.2	-	27	4298	c.4042C>T	c.(4042-4044)CCT>TCT	p.P1348S	EIF4G3_uc010odi.1_Missense_Mutation_p.P952S|EIF4G3_uc010odj.1_Missense_Mutation_p.P1347S|EIF4G3_uc009vpz.2_Missense_Mutation_p.P1068S|EIF4G3_uc001bed.2_Missense_Mutation_p.P1348S|EIF4G3_uc001bef.2_Missense_Mutation_p.P1384S|EIF4G3_uc001bee.2_Missense_Mutation_p.P1354S	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	1348					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CTTCCAACAGGAAGTAAAGGT	0.378													6	53					0	0	1	0	0
NBPF3	84224	broad.mit.edu	37	1	21799382	21799382	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:21799382G>A	uc001ber.2	+	6	1058	c.708G>A	c.(706-708)GAG>GAA	p.E236E	NBPF3_uc001bes.2_Silent_p.E180E|NBPF3_uc009vqb.2_Silent_p.E236E|NBPF3_uc010odm.1_Silent_p.E166E	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	236	NBPF 1.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGGAGGCTGAGAAAGTACAGG	0.423													10	73					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22303559	22303560	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:22303559_22303560CC>TT	uc001bfk.2	+	1	142_143	c.27_28CC>TT	c.(25-30)CTCCTC>CTTTTC	p.L10F	CELA3B_uc009vqf.2_Missense_Mutation_p.L9F	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	10					cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TCAGTTCCCTCCTCCTTGTGGC	0.525													41	393					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22902820	22902820	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:22902820C>T	uc001bfx.1	+	3	395	c.270C>T	c.(268-270)CCC>CCT	p.P90P	EPHA8_uc001bfw.2_Silent_p.P90P	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	90	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCTGGGTCCCCCGAGACGGCG	0.612													7	83					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23111267	23111267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23111267C>T	uc009vqj.1	+	3	654	c.509C>T	c.(508-510)TCC>TTC	p.S170F	EPHB2_uc001bge.2_Missense_Mutation_p.S170F|EPHB2_uc001bgf.2_Missense_Mutation_p.S170F|EPHB2_uc010odu.1_Missense_Mutation_p.S170F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	170	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GGACCTGTGTCCCGCAGCGGC	0.607									Hereditary_Prostate_Cancer				4	34					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23235552	23235553	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23235552_23235553CC>TT	uc009vqj.1	+	13	2535_2536	c.2390_2391CC>TT	c.(2389-2391)GCC>GTT	p.A797V	EPHB2_uc001bge.2_Missense_Mutation_p.A798V|EPHB2_uc001bgf.2_Missense_Mutation_p.A797V|EPHB2_uc010odu.1_Missense_Mutation_p.A739V	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	797	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GCCCCGGAAGCCATCCAGTACC	0.54									Hereditary_Prostate_Cancer				16	103					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23236934	23236934	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23236934C>T	uc009vqj.1	+	14	2707	c.2562C>T	c.(2560-2562)GCC>GCT	p.A854A	EPHB2_uc001bge.2_Silent_p.A855A|EPHB2_uc001bgf.2_Silent_p.A854A|EPHB2_uc010odu.1_Silent_p.A796A	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	854	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GCCCGAGCGCCCTGCACCAAC	0.587									Hereditary_Prostate_Cancer				17	175					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23236960	23236961	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23236960_23236961GG>AA	uc009vqj.1	+	14	2733_2734	c.2588_2589GG>AA	c.(2587-2589)TGG>TAA	p.W863*	EPHB2_uc001bge.2_Nonsense_Mutation_p.W864*|EPHB2_uc001bgf.2_Nonsense_Mutation_p.W863*|EPHB2_uc010odu.1_Nonsense_Mutation_p.W805*	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	863	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CTGGACTGTTGGCAGAAGGACC	0.584									Hereditary_Prostate_Cancer				14	153					0	0	1	0	0
TCEA3	6920	broad.mit.edu	37	1	23724285	23724285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23724285C>T	uc001bgx.1	-	6	742	c.607G>A	c.(607-609)GAT>AAT	p.D203N	TCEA3_uc009vqn.1_Missense_Mutation_p.D182N	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	203	TFIIS central.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		GCTCTCTCACCGTCCGCCTTC	0.572													4	74					0	0	1	0	0
GALE	2582	broad.mit.edu	37	1	24123214	24123214	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:24123214C>T	uc009vqo.1	-	8	978	c.768G>A	c.(766-768)AGG>AGA	p.R256R	GALE_uc001bhv.1_Silent_p.R256R|GALE_uc001bhw.1_Silent_p.R256R|GALE_uc001bhx.1_Silent_p.R256R|GALE_uc009vqp.1_Silent_p.R256R|GALE_uc001bhy.1_Silent_p.R256R|GALE_uc001bhz.1_Silent_p.R182R|GALE_uc001bia.2_Silent_p.R48R	NM_001127621	NP_001121093	Q14376	GALE_HUMAN	UDP-galactose-4-epimerase	256					galactose catabolic process	cytosol	coenzyme binding|protein homodimerization activity|UDP-glucose 4-epimerase activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		CTTTCAGCTTCCTTAAGGCTG	0.592													5	38					0	0	1	0	0
HMGCL	3155	broad.mit.edu	37	1	24140701	24140701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:24140701G>A	uc001bib.2	-	5	520	c.476C>T	c.(475-477)TCA>TTA	p.S159L	HMGCL_uc010oec.1_Intron|HMGCL_uc009vqr.2_Intron|HMGCL_uc001bic.2_Missense_Mutation_p.S134L|HMGCL_uc009vqs.1_Intron|HMGCL_uc001bid.1_Missense_Mutation_p.S159L	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	159					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		AATATTGGCTGACTGCGCTGC	0.498													17	143					0	0	1	0	0
FUCA1	2517	broad.mit.edu	37	1	24180929	24180929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:24180929G>A	uc001bie.2	-	5	935	c.890C>T	c.(889-891)ACC>ATC	p.T297I	FUCA1_uc009vqt.1_RNA	NM_000147	NP_000138	P04066	FUCO_HUMAN	fucosidase, alpha-L-1, tissue precursor	297					fucose metabolic process|glycosaminoglycan catabolic process	lysosome	alpha-L-fucosidase activity|cation binding			breast(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-24)|Colorectal(126;5.69e-08)|COAD - Colon adenocarcinoma(152;3.15e-06)|GBM - Glioblastoma multiforme(114;9.04e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|KIRC - Kidney renal clear cell carcinoma(1967;0.00342)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.144)		GTCAATGCTGGTGCACATCTC	0.448													36	217					0	0	1	0	0
CNR2	1269	broad.mit.edu	37	1	24202038	24202038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:24202038C>T	uc001bif.2	-	2	197	c.70G>A	c.(70-72)GAT>AAT	p.D24N		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	24	Extracellular (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	ATCATGTAATCCTTCATAGGG	0.537													20	202					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24413170	24413170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:24413170C>T	uc001bin.3	-	15	1925	c.1762G>A	c.(1762-1764)GAG>AAG	p.E588K	MYOM3_uc001bim.3_Missense_Mutation_p.E245K|MYOM3_uc001bio.2_Missense_Mutation_p.E588K|MYOM3_uc001bip.1_Missense_Mutation_p.E245K	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	588	Fibronectin type-III 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCGCTGGGCTCCGAGGGATCG	0.627													10	80					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25747261	25747261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:25747261G>A	uc001bkf.2	-	1	103	c.17C>T	c.(16-18)CCG>CTG	p.P6L	RHCE_uc001bkg.2_Missense_Mutation_p.P6L|RHCE_uc001bkh.2_Missense_Mutation_p.P6L|RHCE_uc001bki.2_Missense_Mutation_p.P6L|RHCE_uc001bkj.2_Intron	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	6						integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		GACAGACCGCGGGTACTTAGA	0.572													5	26					0	0	1	0	0
SLC30A2	7780	broad.mit.edu	37	1	26365694	26365694	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:26365694T>C	uc001blh.1	-	7	1146	c.929A>G	c.(928-930)GAG>GGG	p.E310G	SLC30A2_uc001blg.1_Missense_Mutation_p.E359G	NM_032513	NP_115902	Q9BRI3	ZNT2_HUMAN	solute carrier family 30, member 2 isoform 2	310	Vacuolar (Potential).				positive regulation of sequestering of zinc ion|zinc ion transport	integral to membrane|late endosome|lysosomal membrane	cation transmembrane transporter activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.09e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00614)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCATGTCCTCCGAGTAGTC	0.602													4	69					0	0	1	0	0
UBXN11	91544	broad.mit.edu	37	1	26620706	26620706	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:26620706G>A	uc001blw.2	-	9	822	c.549C>T	c.(547-549)TTC>TTT	p.F183F	UBXN11_uc001blz.1_Silent_p.F150F|UBXN11_uc001blv.2_Silent_p.F145F|UBXN11_uc001bly.2_Intron|UBXN11_uc001blx.2_Intron|UBXN11_uc001bma.2_Silent_p.F150F|UBXN11_uc001bmb.1_Silent_p.F183F|UBXN11_uc010ofb.1_Silent_p.F108F|UBXN11_uc010ofc.1_Silent_p.F25F	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	183						cytoplasm|cytoskeleton				ovary(1)	1						CTGGCTTCCAGAACTTCTTGG	0.587													13	157					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26691383	26691383	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:26691383G>A	uc001bmg.1	-	4	772	c.654C>T	c.(652-654)CAC>CAT	p.H218H	ZNF683_uc001bmh.1_Silent_p.H218H|ZNF683_uc009vsj.1_Silent_p.H218H	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	218					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GCATGAGGAGGTGGGGACATT	0.607													12	68					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26691668	26691668	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:26691668G>A	uc001bmg.1	-	4	487	c.369C>T	c.(367-369)TTC>TTT	p.F123F	ZNF683_uc001bmh.1_Silent_p.F123F|ZNF683_uc009vsj.1_Silent_p.F123F	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		ACTTGACTGTGAATTTCTTGT	0.567													3	23					0	0	1	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26873383	26873383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:26873383C>T	uc001bmr.1	+	3	297	c.134C>T	c.(133-135)TCC>TTC	p.S45F	RPS6KA1_uc010ofe.1_Intron|RPS6KA1_uc010off.1_Missense_Mutation_p.S29F|RPS6KA1_uc001bms.1_Missense_Mutation_p.S54F|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	45					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		AAGGAGATCTCCATCACGCAC	0.592													7	41					0	0	1	0	0
FAM46B	115572	broad.mit.edu	37	1	27332849	27332849	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:27332849C>T	uc010ofj.1	-	2	1036	c.864G>A	c.(862-864)CGG>CGA	p.R288R		NM_052943	NP_443175	Q96A09	FA46B_HUMAN	hypothetical protein LOC115572	288										central_nervous_system(1)	1		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;7.71e-51)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|STAD - Stomach adenocarcinoma(196;0.00114)|READ - Rectum adenocarcinoma(331;0.0419)		GCCGGAAGCCCCGCACCAGGA	0.687													8	30					0	0	1	0	0
WDTC1	23038	broad.mit.edu	37	1	27631507	27631507	+	Silent	SNP	C	T	T	rs143241417		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:27631507C>T	uc009vst.2	+	15	2194	c.1659C>T	c.(1657-1659)ATC>ATT	p.I553I	WDTC1_uc001bno.2_Silent_p.I552I|WDTC1_uc001bnp.1_Intron|WDTC1_uc001bnq.2_Silent_p.I231I	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	553	WD 6.						protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		CTCAGTATATCGTCAGTGGCT	0.587													4	36					0	0	1	0	0
MAP3K6	9064	broad.mit.edu	37	1	27683576	27683576	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:27683576G>A	uc001bny.1	-	24	3537	c.3288C>T	c.(3286-3288)ATC>ATT	p.I1096I	MAP3K6_uc009vsw.1_Silent_p.I1088I	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	1096					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AGTGTGGACGGATCTGGCGCT	0.642													12	87					0	0	1	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28282350	28282350	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:28282350C>T	uc001bpg.2	+	6	1037	c.846C>T	c.(844-846)AGC>AGT	p.S282S	SMPDL3B_uc001bpf.2_Silent_p.S282S|SMPDL3B_uc010ofq.1_Silent_p.S76S|SMPDL3B_uc010ofr.1_Silent_p.S234S	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	282					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		ACACCGACAGCTTTCGGATGC	0.567													8	88					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29637977	29637977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:29637977C>T	uc001bru.2	+	21	3007	c.2897C>T	c.(2896-2898)CCT>CTT	p.P966L	PTPRU_uc001brv.2_Missense_Mutation_p.P962L|PTPRU_uc001brw.2_Missense_Mutation_p.P956L|PTPRU_uc009vtq.2_Missense_Mutation_p.P962L|PTPRU_uc009vtr.2_Missense_Mutation_p.P956L	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	966	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GGGCCGAAGCCTGAGATGGTC	0.617													9	117					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32221940	32221940	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:32221940G>A	uc001btn.2	-	4	852	c.498C>T	c.(496-498)CCC>CCT	p.P166P	BAI2_uc010ogp.1_Silent_p.P154P|BAI2_uc010ogq.1_Silent_p.P166P|BAI2_uc001bto.2_Silent_p.P166P|BAI2_uc001btq.1_Silent_p.P154P|BAI2_uc010ogr.1_Silent_p.P154P	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	166	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGGCCTCGGAGGGCTCAGCCG	0.627													7	48					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32257851	32257851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:32257851G>A	uc001bts.1	-	15	2985	c.2927C>T	c.(2926-2928)CCC>CTC	p.P976L	SPOCD1_uc001btr.1_Missense_Mutation_p.P64L|SPOCD1_uc001btt.2_Missense_Mutation_p.P281L|SPOCD1_uc001btu.2_Missense_Mutation_p.P976L|SPOCD1_uc001btv.2_Missense_Mutation_p.P469L	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	976					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		GGTGGGCAGGGGCTGGAAGGC	0.652													7	21					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32279739	32279739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:32279739G>A	uc001bts.1	-	2	1254	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	SPOCD1_uc001btu.2_Missense_Mutation_p.S399F|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	399					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		ATCCAGGGAGGAGCTGAGGCC	0.632													5	23					0	0	1	0	0
BSDC1	55108	broad.mit.edu	37	1	32843591	32843591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:32843591G>A	uc001bvh.3	-	8	703	c.656C>T	c.(655-657)CCC>CTC	p.P219L	BSDC1_uc010ohg.1_Missense_Mutation_p.P236L|BSDC1_uc010ohh.1_Missense_Mutation_p.P163L|BSDC1_uc010ohi.1_Missense_Mutation_p.P124L|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Missense_Mutation_p.P115L|BSDC1_uc001bvi.2_Missense_Mutation_p.P236L	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	219							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTCCCAGCCGGGCTCTTCAGA	0.647													13	57					0	0	1	0	0
ADC	113451	broad.mit.edu	37	1	33583681	33583681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:33583681C>T	uc001bwr.2	+	11	1795	c.1208C>T	c.(1207-1209)GCC>GTC	p.A403V	ADC_uc001bws.2_Missense_Mutation_p.A403V|ADC_uc009vue.2_Missense_Mutation_p.A403V|ADC_uc001bwt.1_Missense_Mutation_p.A308V|ADC_uc001bwu.2_Missense_Mutation_p.A308V|ADC_uc001bwv.2_Missense_Mutation_p.A308V|ADC_uc001bww.2_Missense_Mutation_p.A308V|ADC_uc001bwx.1_Missense_Mutation_p.A380V|ADC_uc009vug.2_Missense_Mutation_p.A423V	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	403					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	GGGACCCAGGCCTGCCACATC	0.612													7	47					0	0	1	0	0
PHC2	1912	broad.mit.edu	37	1	33797021	33797021	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:33797021A>C	uc001bxg.1	-	11	1985	c.1931T>G	c.(1930-1932)CTC>CGC	p.L644R	PHC2_uc001bxh.1_Missense_Mutation_p.L616R|PHC2_uc009vuh.1_Missense_Mutation_p.L645R|PHC2_uc001bxe.1_Missense_Mutation_p.L109R|PHC2_uc001bxf.1_Missense_Mutation_p.L59R	NM_198040	NP_932157	Q8IXK0	PHC2_HUMAN	polyhomeotic-like 2 isoform a	644	FCS-type.				multicellular organismal development	PcG protein complex	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCGGCCACAGAGCTCACACTT	0.527													18	162					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33999493	33999493	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:33999493G>A	uc001bxn.1	-	62	9491	c.9462C>T	c.(9460-9462)GTC>GTT	p.V3154V	CSMD2_uc001bxm.1_Silent_p.V3298V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3154	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AACGGAAGAGGACTGTGCTTC	0.567													7	43					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34011769	34011769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34011769G>A	uc001bxn.1	-	56	8565	c.8536C>T	c.(8536-8538)CGT>TGT	p.R2846C	CSMD2_uc001bxm.1_Missense_Mutation_p.R2990C	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2846	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCCCCCAAACGGATGCCATGA	0.567													8	75					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34033348	34033348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34033348G>A	uc001bxn.1	-	54	8185	c.8156C>T	c.(8155-8157)CCT>CTT	p.P2719L	CSMD2_uc001bxm.1_Missense_Mutation_p.P2742L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2719	Sushi 18.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AATGGGCTCAGGAGTCCCACA	0.532													9	30					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34038273	34038273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34038273G>A	uc001bxn.1	-	51	7630	c.7601C>T	c.(7600-7602)CCT>CTT	p.P2534L	CSMD2_uc001bxm.1_Missense_Mutation_p.P2532L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2534	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGGGGCCTCAGGAAGCCCACA	0.488													5	75					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34076818	34076818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34076818C>T	uc001bxn.1	-	41	6075	c.6046G>A	c.(6046-6048)GAG>AAG	p.E2016K	CSMD2_uc001bxm.1_Missense_Mutation_p.E2056K|CSMD2_uc001bxo.1_Missense_Mutation_p.E929K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2016	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGTTGGGCTCGGTGGAGAAG	0.557													5	56					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34174747	34174747	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34174747C>A	uc001bxn.1	-	22	3427	c.3398G>T	c.(3397-3399)GGG>GTG	p.G1133V	CSMD2_uc001bxm.1_Missense_Mutation_p.G1173V|CSMD2_uc001bxo.1_Missense_Mutation_p.G46V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1133	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AATTCCCTTCCCTGGCTGGGT	0.453													21	135					2.41591e-17	2.44862e-17	1	1	0
CSMD2	114784	broad.mit.edu	37	1	34401380	34401380	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34401380G>A	uc001bxn.1	-	4	602	c.573C>T	c.(571-573)TTC>TTT	p.F191F	CSMD2_uc001bxm.1_Silent_p.F231F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	191	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGGCAGGGGGAAGTCCCACG	0.627													5	52					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34631397	34631397	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34631397G>A	uc001bxn.1	-	1	47	c.18C>T	c.(16-18)ATC>ATT	p.I6I	CSMD2_uc001bxm.1_5'Flank|C1orf94_uc001bxs.3_5'Flank	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	6	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCCGGGGGCGATGCTTATGA	0.562													13	106					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34663482	34663482	+	Missense_Mutation	SNP	C	T	T	rs145927354	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:34663482C>T	uc001bxs.3	+	2	806	c.407C>T	c.(406-408)GCT>GTT	p.A136V	C1orf94_uc001bxt.2_Missense_Mutation_p.A326V	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	136							protein binding				0		Myeloproliferative disorder(586;0.0393)				AAGCCCAAGGCTGACCCTGCT	0.597													5	56					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223450	35223450	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:35223450G>A	uc001bxu.2	+	2	619	c.519G>A	c.(517-519)GTG>GTA	p.V173V	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	173	Extracellular (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				CCAATATAGTGGACTGCTTCA	0.512													6	62					0	0	1	0	0
GJA4	2701	broad.mit.edu	37	1	35260594	35260594	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:35260594G>A	uc001bya.2	+	2	868	c.780G>A	c.(778-780)ACG>ACA	p.T260T	GJA4_uc009vul.2_Silent_p.T336T|GJA4_uc009vum.1_Silent_p.T260T	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	260	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				ACCCTTACACGGACCAGGTCT	0.652													3	30					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35333169	35333169	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:35333169G>A	uc001byc.2	-	8	2545	c.2545C>T	c.(2545-2547)CAG>TAG	p.Q849*		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	849					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				AAGAACTGCTGAACCTTCTGG	0.517													39	352					0	0	1	0	0
ZMYM6	9204	broad.mit.edu	37	1	35476563	35476563	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:35476563C>T	uc001byh.2	-	9	1365	c.1137G>A	c.(1135-1137)CCG>CCA	p.P379P	ZMYM6_uc001byf.1_Silent_p.P379P|ZMYM6_uc010oht.1_Silent_p.P282P|ZMYM6_uc009vup.2_Silent_p.P185P|ZMYM6_uc009vuq.1_Silent_p.P379P|ZMYM6_uc009vur.1_Silent_p.P185P	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	379	MYM-type 5.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				TGGAGGAGGGCGGGCTTACAA	0.532													8	57					0	0	1	0	0
PSMB2	5690	broad.mit.edu	37	1	36096883	36096883	+	Missense_Mutation	SNP	G	A	A	rs150552802		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:36096883G>A	uc001bzf.1	-	3	387	c.277C>T	c.(277-279)CGG>TGG	p.R93W	PSMB2_uc001bzd.1_Missense_Mutation_p.R93W|PSMB2_uc010ohz.1_Missense_Mutation_p.R68W|PSMB2_uc001bzg.1_Missense_Mutation_p.R93W	NM_002794	NP_002785	P49721	PSB2_HUMAN	proteasome beta 2 subunit	93					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)			Bortezomib(DB00188)	ACCCGACTCCGAAGACAGTCA	0.393													12	77					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36752050	36752050	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:36752050C>T	uc001cae.3	+	4	443	c.219C>T	c.(217-219)TTC>TTT	p.F73F	THRAP3_uc001caf.3_Silent_p.F73F|THRAP3_uc001cag.1_Silent_p.F73F	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	73	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ATCGGGATTTCCGAGGTCACA	0.453			T	USP6	aneurysmal bone cysts								16	99					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37307342	37307342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:37307342C>T	uc001caz.2	-	10	1660	c.1525G>A	c.(1525-1527)GAC>AAC	p.D509N	GRIK3_uc001cba.1_Missense_Mutation_p.D509N	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	509	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CTTACGTGGTCGATGAGCTCC	0.592													18	112					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37337863	37337863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:37337863C>T	uc001caz.2	-	4	793	c.658G>A	c.(658-660)GAG>AAG	p.E220K	GRIK3_uc001cba.1_Missense_Mutation_p.E220K	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	220	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CGCTTCATCTCCTTGAGCAAG	0.597													11	81					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38027303	38027303	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:38027303G>A	uc001cbj.2	+	4	619	c.609G>A	c.(607-609)CAG>CAA	p.Q203Q	DNALI1_uc010oie.1_RNA	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	181	Potential.				cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGGCACTGCAGGCTGAGCAGG	0.577											OREG0013380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	62					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39823112	39823112	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:39823112C>T	uc010oiu.1	+	9	6941	c.6810C>T	c.(6808-6810)GCC>GCT	p.A2270A	MACF1_uc010ois.1_Silent_p.A1768A|MACF1_uc001cda.1_Silent_p.A1676A|MACF1_uc001cdc.1_Silent_p.A855A|MACF1_uc001cdb.1_Silent_p.A855A	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3835					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAGCTCAGGCCTTCTTGGATC	0.502													8	67					0	0	1	0	0
ZNF643	65243	broad.mit.edu	37	1	40928725	40928725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:40928725C>T	uc001cfn.1	+	5	1366	c.1069C>T	c.(1069-1071)CAT>TAT	p.H357Y	ZNF643_uc001cfl.1_Missense_Mutation_p.H255Y|ZNF643_uc001cfm.1_Missense_Mutation_p.H223Y	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	357	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			TGTTAGAATTCATACCGGGGA	0.438													3	43					0	0	1	0	0
ZNF684	127396	broad.mit.edu	37	1	41006293	41006293	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:41006293C>T	uc001cft.1	+	3	302	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			CTGTGGATTTCACTGCAGAGG	0.443													12	140					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046804	42046804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:42046804G>A	uc001cgz.3	-	4	4878	c.3665C>T	c.(3664-3666)TCC>TTC	p.S1222F	HIVEP3_uc001cha.3_Missense_Mutation_p.S1222F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1222					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGGAGGAAGGAAGGGGGCTG	0.592													9	98					0	0	1	0	0
WDR65	149465	broad.mit.edu	37	1	43649366	43649366	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:43649366G>A	uc001cip.1	+	4	700	c.579G>A	c.(577-579)CAG>CAA	p.Q193Q	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Silent_p.Q182Q|WDR65_uc001ciq.1_Silent_p.Q193Q	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	193										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCAGCTTTCAGAGGGGAGAAC	0.493													9	90					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43783338	43783338	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:43783338G>A	uc001ciu.2	+	16	2803	c.2724G>A	c.(2722-2724)AAG>AAA	p.K908K	TIE1_uc010oke.1_Silent_p.K863K|TIE1_uc009vwq.2_Silent_p.K864K|TIE1_uc010okg.1_Silent_p.K553K	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	908	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGGCCTGTAAGAACCGAGGTG	0.557													11	130					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43805058	43805058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:43805058C>T	uc001ciw.2	+	4	553	c.508C>T	c.(508-510)CGC>TGC	p.R170C	MPL_uc001civ.2_Missense_Mutation_p.R170C|MPL_uc009vwr.2_Missense_Mutation_p.R163C	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	170	Extracellular (Potential).|Fibronectin type-III 1.				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTACGAACTCCGCTATGGCCC	0.572			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						13	91					0	0	1	0	0
CDC20	991	broad.mit.edu	37	1	43825729	43825729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:43825729G>A	uc001cix.2	+	5	618	c.517G>A	c.(517-519)GAC>AAC	p.D173N	CDC20_uc001ciy.2_Missense_Mutation_p.D173N	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	173					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TTCCCTGCCAGACCGTATCCT	0.522													37	305					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43907790	43907790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:43907790C>T	uc001cjk.1	+	41	5627	c.5165C>T	c.(5164-5166)CCA>CTA	p.P1722L		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2621						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGAGGAGACCAACACAGCAG	0.537													5	56					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44467209	44467209	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:44467209G>A	uc001cll.2	-	9	1464	c.1272C>T	c.(1270-1272)CAC>CAT	p.H424H	SLC6A9_uc009vxe.2_Silent_p.H280H|SLC6A9_uc010okm.1_Silent_p.H351H|SLC6A9_uc001clm.2_Silent_p.H370H|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.H355H|SLC6A9_uc001cln.2_Silent_p.H351H|SLC6A9_uc010oko.1_Silent_p.H240H|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	424	Helical; Name=7; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CCACGCCCAGGTGATTGGCCA	0.607													28	173					0	0	1	0	0
RNF220	55182	broad.mit.edu	37	1	44877836	44877836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:44877836C>T	uc001clv.1	+	2	427	c.67C>T	c.(67-69)CCA>TCA	p.P23S	RNF220_uc001clw.1_Missense_Mutation_p.P23S	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	23					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCTGGCATCCCCAGCACTGAT	0.572													3	86					0	0	1	0	0
RNF220	55182	broad.mit.edu	37	1	44878025	44878025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:44878025C>T	uc001clv.1	+	2	616	c.256C>T	c.(256-258)CGT>TGT	p.R86C	RNF220_uc001clw.1_Missense_Mutation_p.R86C	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	86					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TTTTGCCAATCGTGATTTCCC	0.507													53	495					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45293975	45293975	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:45293975A>G	uc010olf.1	-	13	1714	c.1702T>C	c.(1702-1704)TTC>CTC	p.F568L	PTCH2_uc010olg.1_Missense_Mutation_p.F266L	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	568	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					TACCTGGAGAAGCAGCAGAGC	0.627									Basal_Cell_Nevus_syndrome				3	46					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47279916	47279916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:47279916G>A	uc001cqm.3	+	7	892	c.808G>A	c.(808-810)GAT>AAT	p.D270N	CYP4B1_uc009vyl.1_Missense_Mutation_p.D107N|CYP4B1_uc001cqn.3_Missense_Mutation_p.D271N|CYP4B1_uc009vym.2_Missense_Mutation_p.D256N|CYP4B1_uc010omk.1_Missense_Mutation_p.D107N|CYP4B1_uc010oml.1_Missense_Mutation_p.D108N	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	270					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					AGCCCTGCAGGATGAGAAGGT	0.577													3	55					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47280848	47280848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:47280848C>T	uc001cqm.3	+	8	1066	c.982C>T	c.(982-984)CTC>TTC	p.L328F	CYP4B1_uc009vyl.1_Missense_Mutation_p.L165F|CYP4B1_uc001cqn.3_Missense_Mutation_p.L329F|CYP4B1_uc009vym.2_Missense_Mutation_p.L314F|CYP4B1_uc010omk.1_Missense_Mutation_p.L165F	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	328					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CTCCTGGTTTCTCTACTGCAT	0.537													11	60					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47365968	47365968	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:47365968G>A	uc001cqo.1	-	1		c.180C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GGGGGTGCAGGAAACAGGTGC	0.483													7	55					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402423	47402423	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:47402423C>T	uc001cqp.3	-	4	474	c.423G>A	c.(421-423)CAG>CAA	p.Q141Q	CYP4A11_uc001cqq.2_Silent_p.Q141Q|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	141					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TCCGTCGATGCTGGAACCATG	0.453													15	62					0	0	1	0	0
TAL1	6886	broad.mit.edu	37	1	47685586	47685586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:47685586C>T	uc001cqx.2	-	4	1379	c.802G>A	c.(802-804)GGA>AGA	p.G268R	TAL1_uc009vyq.2_Silent_p.V24V|TAL1_uc001cqy.2_Missense_Mutation_p.G268R	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	268	Poly-Gly.				basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						cccccacctccacccccaccA	0.552			T	TRD@|SIL	lymphoblastic leukemia/biphasic								5	26					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50661409	50661409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:50661409C>T	uc001csb.2	+	5	953	c.685C>T	c.(685-687)CCC>TCC	p.P229S	ELAVL4_uc001cry.3_Missense_Mutation_p.P232S|ELAVL4_uc001crz.3_Missense_Mutation_p.P229S|ELAVL4_uc001csa.3_Missense_Mutation_p.P246S|ELAVL4_uc001csc.3_Missense_Mutation_p.P229S|ELAVL4_uc009vyu.2_Missense_Mutation_p.P234S|ELAVL4_uc010omz.1_Missense_Mutation_p.P234S	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	229					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						CTACCAGTCCCCCAACCGGCG	0.602													15	107					0	0	1	0	0
OSBPL9	114883	broad.mit.edu	37	1	52226376	52226376	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:52226376C>T	uc001cst.2	+	10	616	c.597C>T	c.(595-597)CCC>CCT	p.P199P	OSBPL9_uc001css.2_Silent_p.P204P|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Silent_p.P200P|OSBPL9_uc001csu.2_Silent_p.P209P|OSBPL9_uc001csv.2_Silent_p.P34P|OSBPL9_uc001csw.2_Silent_p.P186P|OSBPL9_uc001csy.2_Silent_p.P21P|OSBPL9_uc001csz.2_Silent_p.P21P|OSBPL9_uc001cta.2_Silent_p.P89P|OSBPL9_uc001ctb.2_5'UTR	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	199					lipid transport		lipid binding			central_nervous_system(1)	1						CTATTAATCCCGTAGATGCAA	0.368													8	82					0	0	1	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52704528	52704528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:52704528C>T	uc001cto.2	+	4	1611	c.1439C>T	c.(1438-1440)TCC>TTC	p.S480F	ZFYVE9_uc001ctn.2_Missense_Mutation_p.S480F|ZFYVE9_uc001ctp.2_Missense_Mutation_p.S480F	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	480					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						GGTTGTGATTCCTATGGAATG	0.363													8	73					0	0	1	0	0
ORC1L	4998	broad.mit.edu	37	1	52854944	52854944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:52854944G>A	uc001ctt.2	-	7	1351	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	ORC1L_uc010oni.1_Missense_Mutation_p.R378C|ORC1L_uc001ctu.2_Missense_Mutation_p.R378C|ORC1L_uc009vzd.2_Missense_Mutation_p.R132C	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	378					cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						CTGCGGATACGATGGGGAGTA	0.498													15	123					0	0	1	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52941065	52941065	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:52941065G>A	uc001ctx.2	-	13	2400	c.2166C>T	c.(2164-2166)TTC>TTT	p.F722F	ZCCHC11_uc001cty.2_Silent_p.F722F|ZCCHC11_uc001ctz.2_Silent_p.F722F|ZCCHC11_uc009vze.1_Silent_p.F722F|ZCCHC11_uc009vzf.1_Silent_p.F481F|ZCCHC11_uc001cub.2_Silent_p.F722F	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	722					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						CTCTTTTCTTGAAATCCACTG	0.418													21	130					0	0	1	0	0
LRP8	7804	broad.mit.edu	37	1	53728233	53728233	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:53728233G>A	uc001cvi.1	-	11	1801	c.1659C>T	c.(1657-1659)TTC>TTT	p.F553F	LRP8_uc001cvh.1_Silent_p.F106F|LRP8_uc001cvk.1_Silent_p.F383F|LRP8_uc001cvj.1_Silent_p.F553F|LRP8_uc001cvl.1_Silent_p.F424F|LRP8_uc001cvm.1_Silent_p.F138F	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	553	LDL-receptor class B 3.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						ACCAATACATGAACCTAAAAG	0.488													42	316					0	0	1	0	0
CDCP2	200008	broad.mit.edu	37	1	54606818	54606818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:54606818G>A	uc001cwv.1	-	3	1564	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	239	CUB 2.					extracellular region				ovary(1)	1						GTTGAAGTCGGACTTGAAGAC	0.532													4	52					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55080513	55080513	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:55080513C>T	uc001cxn.2	-	4	567	c.435G>A	c.(433-435)AAG>AAA	p.K145K	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	145						integral to membrane					0						CCTTGATGTTCTTGAAGTCCA	0.562													5	44					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55168407	55168407	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:55168407T>C	uc010ooe.1	+	21	3877	c.3553T>C	c.(3553-3555)TGC>CGC	p.C1185R	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.C703R|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.C386R	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1185						integral to membrane	binding				0						GGCCAAAATTTGCAAGTGCCT	0.423													17	105					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55174698	55174698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:55174698C>T	uc010ooe.1	+	23	4003	c.3679C>T	c.(3679-3681)CCC>TCC	p.P1227S	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.P745S|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.P428S	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1227						integral to membrane	binding				0						GTCCCTGGTCCCCTGCATGGA	0.527													22	175					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55174706	55174706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:55174706G>A	uc010ooe.1	+	23	4011	c.3687G>A	c.(3685-3687)ATG>ATA	p.M1229I	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.M747I|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.M430I	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1229						integral to membrane	binding				0						TCCCCTGCATGGAGAGCATAA	0.517													22	171					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	56989547	56989547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:56989547G>A	uc001cyj.1	-	5	1082	c.581C>T	c.(580-582)TCC>TTC	p.S194F		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	194	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						AGAGAAGAAGGACTTCCTGCA	0.408													9	40					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257848	57257848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:57257848G>A	uc001cym.3	-	2	1044	c.638C>T	c.(637-639)CCC>CTC	p.P213L	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.P213L	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	213										ovary(3)|skin(2)	5						TACAAAAGAGGGATCTTCAGA	0.502													6	63					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57347208	57347208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:57347208G>A	uc001cyo.2	+	5	687	c.555G>A	c.(553-555)TGG>TGA	p.W185*		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	185	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						ATGGGGAATGGAGGGAGCTTC	0.458													7	83					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57351798	57351798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:57351798G>A	uc001cyo.2	+	7	1186	c.1054G>A	c.(1054-1056)GAA>AAA	p.E352K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	352	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGCATTTATGAATATATCCT	0.413													6	77					0	0	1	0	0
FGGY	55277	broad.mit.edu	37	1	60139793	60139793	+	Silent	SNP	C	T	T	rs115951404	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:60139793C>T	uc001czi.3	+	14	1712	c.1500C>T	c.(1498-1500)TTC>TTT	p.F500F	FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Silent_p.F524F|FGGY_uc001czj.3_Silent_p.F499F|FGGY_uc001czk.3_Silent_p.F388F|FGGY_uc001czl.3_Silent_p.F412F|FGGY_uc001czm.3_Silent_p.F201F	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	500					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					CAGGGGATTTCGCTTCTGTAC	0.577													3	38					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740699	62740699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:62740699G>A	uc001dah.3	-	3	454	c.77C>T	c.(76-78)TCT>TTT	p.S26F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	26										ovary(3)|skin(2)|lung(1)	6						GGTCTCCACAGAATAAGGGTG	0.438													13	113					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	63018492	63018492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:63018492G>A	uc001daq.2	-	22	2711	c.2677C>T	c.(2677-2679)CGT>TGT	p.R893C	DOCK7_uc001dan.2_Missense_Mutation_p.R785C|DOCK7_uc001dao.2_Missense_Mutation_p.R785C|DOCK7_uc001dap.2_Missense_Mutation_p.R893C|DOCK7_uc001dam.2_Missense_Mutation_p.R73C	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	893					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						CTTCGAGAACGATTTAAATTA	0.443													9	64					0	0	1	0	0
ITGB3BP	23421	broad.mit.edu	37	1	63920636	63920636	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:63920636G>T	uc001dba.1	-	5	289	c.258C>A	c.(256-258)TTC>TTA	p.F86L	ITGB3BP_uc001dbb.1_Missense_Mutation_p.F125L|ITGB3BP_uc001dbc.1_RNA|ITGB3BP_uc001dbd.1_RNA|ITGB3BP_uc009wak.1_Missense_Mutation_p.F108L|ITGB3BP_uc001dbe.1_5'UTR	NM_014288	NP_055103	Q13352	CENPR_HUMAN	integrin beta 3 binding protein	86	Potential.				apoptosis|cell adhesion|CenH3-containing nucleosome assembly at centromere|induction of apoptosis by extracellular signals|mitotic prometaphase|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome, centromeric region|cytosol|membrane fraction|nucleoplasm	protein C-terminus binding|signal transducer activity				0						GCAACATCATGAATCTAGTAA	0.308													3	24					0.184627	0.184948	1	1	0
EFCAB7	84455	broad.mit.edu	37	1	64022859	64022859	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:64022859T>G	uc001dbf.2	+	10	1583	c.1289T>G	c.(1288-1290)TTT>TGT	p.F430C		NM_032437	NP_115813	A8K855	EFCB7_HUMAN	EF-hand calcium binding domain 7	430	EF-hand 3.						calcium ion binding				0						GAATATAATTTTTTTGAATTG	0.294													3	29					0	0	1	0	0
PDE4B	5142	broad.mit.edu	37	1	66384348	66384348	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:66384348C>T	uc001dcn.2	+	3	302	c.111C>T	c.(109-111)ATC>ATT	p.I37I	PDE4B_uc009war.2_Intron|PDE4B_uc001dco.2_Silent_p.I37I	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	37					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	CACTTGGGATCGACCTCTGGA	0.438													10	74					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67108540	67108540	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:67108540A>G	uc001dcr.2	+	6	493	c.276A>G	c.(274-276)GAA>GAG	p.E92E		NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	92					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						GACCCGAGGAACCCGGCTATA	0.333													5	33					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70502226	70502226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:70502226G>A	uc001dep.2	+	18	2123	c.2093G>A	c.(2092-2094)GGA>GAA	p.G698E	LRRC7_uc009wbg.2_Intron|LRRC7_uc001deq.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	698						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GCTTCCTCAGGATCCTCTAAT	0.453													11	80					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70573452	70573452	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:70573452G>A	uc001dep.2	+	24	4479	c.4449G>A	c.(4447-4449)AGG>AGA	p.R1483R	LRRC7_uc009wbg.2_Silent_p.R767R|LRRC7_uc001deq.2_Silent_p.R677R	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1483	PDZ.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TTGTTACTAGGGTTCAGCCTG	0.408													7	100					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492524	74492524	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:74492524A>G	uc001dfy.3	-	8	2040	c.1848T>C	c.(1846-1848)TTT>TTC	p.F616F	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	616										ovary(2)	2						TGGGAACTTTAAAGTCTAAAT	0.284													4	22					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037164	75037164	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:75037164C>T	uc001dgg.2	-	14	4449	c.4230G>A	c.(4228-4230)CGG>CGA	p.R1410R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1410	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTCCCCACTCCGTGCTAATT	0.552													17	105					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75038462	75038462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:75038462C>T	uc001dgg.2	-	14	3151	c.2932G>A	c.(2932-2934)GAG>AAG	p.E978K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	978	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GCTGGTTCCTCTCCCCCAAGA	0.527													10	55					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75039077	75039077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:75039077C>T	uc001dgg.2	-	14	2536	c.2317G>A	c.(2317-2319)GAA>AAA	p.E773K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	773	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCATTGCTTCTTTCTTCTCC	0.473													4	63					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75055570	75055570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:75055570C>T	uc001dgg.2	-	12	2140	c.1921G>A	c.(1921-1923)GAA>AAA	p.E641K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E435K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	641	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATTTCAATTTCTAAGGATTCC	0.408													8	61					0	0	1	0	0
MSH4	4438	broad.mit.edu	37	1	76313941	76313941	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:76313941C>T	uc001dhd.1	+	8	1251	c.1210C>T	c.(1210-1212)CAA>TAA	p.Q404*		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	404					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TGTTTTAGTCCAAATTCCAAA	0.274								MMR					4	61					0	0	1	0	0
DNAJB4	11080	broad.mit.edu	37	1	78479176	78479176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:78479176G>A	uc001dij.2	+	2	812	c.653G>A	c.(652-654)AGA>AAA	p.R218K	DNAJB4_uc010orn.1_Missense_Mutation_p.R103K	NM_007034	NP_008965	Q9UDY4	DNJB4_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 4	218					protein folding|response to heat|response to unfolded protein	cytoplasm|plasma membrane	heat shock protein binding|unfolded protein binding				0						ACTTTTCCAAGAGAAGGAGAT	0.338													7	44					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	79002119	79002119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:79002119G>A	uc001din.2	+	3	1093	c.827G>A	c.(826-828)GGA>GAA	p.G276E	PTGFR_uc001dim.2_3'UTR	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	276	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GGAATAAATGGAAATCATTCT	0.343													16	47					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82431795	82431795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:82431795C>T	uc001dit.3	+	11	2201	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.P674S|LPHN2_uc001div.2_Missense_Mutation_p.P674S|LPHN2_uc009wcd.2_Missense_Mutation_p.P674S|LPHN2_uc001diw.2_Missense_Mutation_p.P258S	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	687	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CTTTAAATTTCCTCTGGGCAT	0.438													13	94					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82447627	82447627	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:82447627C>T	uc001dit.3	+	18	3379	c.3198C>T	c.(3196-3198)TTC>TTT	p.F1066F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.F1066F|LPHN2_uc001div.2_Silent_p.F1066F|LPHN2_uc009wcd.2_Silent_p.F1066F|LPHN2_uc001diw.2_Silent_p.F650F|LPHN2_uc009wce.1_Silent_p.F167F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1079	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGGGAGTGTTCATTTTCATCT	0.358													4	44					0	0	1	0	0
SSX2IP	117178	broad.mit.edu	37	1	85135491	85135491	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:85135491A>G	uc001dkh.2	-	5	574	c.299T>C	c.(298-300)CTA>CCA	p.L100P	SSX2IP_uc001dkf.2_Missense_Mutation_p.L73P|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.L73P|SSX2IP_uc001dki.2_Missense_Mutation_p.L100P|SSX2IP_uc010osa.1_Missense_Mutation_p.L73P|SSX2IP_uc001dkj.2_Missense_Mutation_p.L100P|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.L96P	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	100					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CATACAATTTAGTACAGCTAC	0.378													13	56					0	0	1	0	0
MCOLN2	255231	broad.mit.edu	37	1	85403715	85403715	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:85403715G>A	uc001dkm.2	-	10	1402	c.1161C>T	c.(1159-1161)CTC>CTT	p.L387L	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	387	Helical; (Potential).					integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CCCAAACCAAGAGCGTAGAGG	0.403													14	67					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89615201	89615201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:89615201G>A	uc001dna.2	-	7	1065	c.926C>T	c.(925-927)CCT>CTT	p.P309L	GBP2_uc001dmy.1_RNA	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	309						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		CTCCAGACAAGGAGTCGCTCC	0.527													9	61					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89618020	89618020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:89618020C>T	uc001dna.2	-	5	695	c.556G>A	c.(556-558)GAG>AAG	p.E186K	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	186						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		AACTTCAGCTCCAGGGTAAAA	0.478													17	109					0	0	1	0	0
GBP6	163351	broad.mit.edu	37	1	89850978	89850978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:89850978G>A	uc001dnf.2	+	11	2126	c.1852G>A	c.(1852-1854)GGT>AGT	p.G618S	GBP6_uc010ost.1_Missense_Mutation_p.G488S	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	618							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		AATTGGTCATGGTGTCAAAGG	0.378													13	80					0	0	1	0	0
C1orf146	388649	broad.mit.edu	37	1	92707815	92707815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:92707815G>A	uc001doq.2	+	3	185	c.113G>A	c.(112-114)CGA>CAA	p.R38Q	C1orf146_uc010ote.1_Intron	NM_001012425	NP_001012425	Q5VVC0	CA146_HUMAN	hypothetical protein LOC388649	38										ovary(1)	1		all_lung(203;0.00528)|Lung NSC(277;0.0193)		all cancers(265;0.00846)|Epithelial(280;0.0952)		CACAAAGTTCGATATTCAGAT	0.299													7	47					0	0	1	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94335415	94335415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:94335415G>A	uc001dqf.2	-	7	2301	c.2263C>T	c.(2263-2265)CGC>TGC	p.R755C	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	755					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TCTTAATTGCGAAATTTCTTC	0.323													4	12					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94471002	94471002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:94471002C>T	uc001dqh.2	-	44	6246	c.6142G>A	c.(6142-6144)GAA>AAA	p.E2048K	ABCA4_uc001dqi.1_Missense_Mutation_p.E167K	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2048	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTCACCTTTTCGATTTCTTCT	0.448													11	146					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94643546	94643546	+	Silent	SNP	G	A	A	rs139806754	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:94643546G>A	uc001dqj.3	-	21	3027	c.2658C>T	c.(2656-2658)TTC>TTT	p.F886F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.F452F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	886	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GGGACCCATCGAAGATCTTCT	0.443													9	94					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97544590	97544590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:97544590C>T	uc001drv.2	-	23	3157	c.3020G>A	c.(3019-3021)AGG>AAG	p.R1007K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	1007	4Fe-4S ferredoxin-type 3.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGGTGTTGTCCTGGAAACCAT	0.463													18	174					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98164926	98164926	+	Missense_Mutation	SNP	C	T	T	rs146170505		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:98164926C>T	uc001drv.2	-	6	798	c.661G>A	c.(661-663)GAA>AAA	p.E221K	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	221					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CCAACATATTCTTGTTTTTCA	0.353													13	88					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100366238	100366238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:100366238C>T	uc001dsi.1	+	26	3809	c.3409C>T	c.(3409-3411)CCT>TCT	p.P1137S	AGL_uc001dsj.1_Missense_Mutation_p.P1137S|AGL_uc001dsk.1_Missense_Mutation_p.P1137S|AGL_uc001dsl.1_Missense_Mutation_p.P1137S|AGL_uc001dsm.1_Missense_Mutation_p.P1121S|AGL_uc001dsn.1_Missense_Mutation_p.P1120S	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1137	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TGGTCTCATTCCTAATCTACT	0.388													44	251					0	0	1	0	0
VAV3	10451	broad.mit.edu	37	1	108226151	108226151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:108226151C>T	uc001dvk.1	-	19	1790	c.1736G>A	c.(1735-1737)CGG>CAG	p.R579Q	VAV3_uc001dvj.1_Missense_Mutation_p.R19Q|VAV3_uc010ouv.1_Intron|VAV3_uc010ouw.1_Missense_Mutation_p.R579Q|VAV3_uc001dvl.1_Missense_Mutation_p.R403Q|VAV3_uc010oux.1_Missense_Mutation_p.R579Q	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	579					angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		TCCATTGGTCCGTTTCTGTGC	0.363													8	75					0	0	1	0	0
STXBP3	6814	broad.mit.edu	37	1	109321928	109321928	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:109321928C>T	uc001dvy.2	+	9	780	c.705C>T	c.(703-705)CTC>CTT	p.L235L	STXBP3_uc001dvz.2_RNA	NM_007269	NP_009200	O00186	STXB3_HUMAN	syntaxin binding protein 3	235	Mediates interaction with DOC2B (By similarity).				negative regulation of calcium ion-dependent exocytosis|neutrophil degranulation|platelet aggregation|protein transport|vesicle docking involved in exocytosis	cytosol|nucleus|platelet alpha granule|specific granule|tertiary granule	syntaxin-2 binding			ovary(3)|central_nervous_system(1)	4		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0386)|Lung(183;0.104)|COAD - Colon adenocarcinoma(174;0.137)|Epithelial(280;0.231)		ATTCACAGCTCTTAATAATTG	0.348													14	145					0	0	1	0	0
AKNAD1	254268	broad.mit.edu	37	1	109391555	109391555	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:109391555C>T	uc001dwa.2	-	4	1430	c.1161G>A	c.(1159-1161)CAG>CAA	p.Q387Q	AKNAD1_uc010ovb.1_Silent_p.Q94Q|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	387	Potential.									ovary(3)	3						GTTGATCAGTCTGTTCTTTCA	0.338													5	66					0	0	1	0	0
SARS	6301	broad.mit.edu	37	1	109772077	109772077	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:109772077T>C	uc001dwu.1	+	4	405	c.330T>C	c.(328-330)ATT>ATC	p.I110I	SARS_uc001dwt.1_Silent_p.I110I|SARS_uc001dwv.1_Silent_p.I110I|SARS_uc001dww.1_Silent_p.I43I|SARS_uc001dwx.1_Silent_p.I110I|SARS_uc009wfa.1_Silent_p.I110I|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'UTR	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	110					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	GACTCCTCATTGATGAAGCCA	0.507													29	243					0	0	1	0	0
AMPD2	271	broad.mit.edu	37	1	110163659	110163659	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:110163659C>T	uc009wfh.1	+	2	566	c.24C>T	c.(22-24)CTC>CTT	p.L8L	AMPD2_uc009wfg.1_Intron|AMPD2_uc001dyb.1_Intron|AMPD2_uc001dyc.1_Silent_p.L8L|AMPD2_uc010ovr.1_5'UTR|AMPD2_uc010ovs.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	8					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		GCCAGGGCCTCTTCCGCCTGC	0.672													10	58					0	0	1	0	0
GSTM3	2947	broad.mit.edu	37	1	110280189	110280189	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:110280189G>C	uc001dyo.2	-	8	779	c.469C>G	c.(469-471)CTC>GTC	p.L157V	GSTM3_uc001dyp.2_Missense_Mutation_p.L154V|GSTM3_uc010ovv.1_Missense_Mutation_p.L157V	NM_000849	NP_000840	P21266	GSTM3_HUMAN	glutathione S-transferase mu 3	157	GST C-terminal.				establishment of blood-nerve barrier|glutathione metabolic process|response to estrogen stimulus	cytoplasm	glutathione transferase activity|identical protein binding				0		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Colorectal(144;0.0339)|Lung(183;0.0426)|all cancers(265;0.113)|Epithelial(280;0.125)|COAD - Colon adenocarcinoma(174;0.134)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	ACAAAGGTGAGCTAGAAGAAA	0.448													8	65					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110294354	110294354	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:110294354C>T	uc001dyr.1	-	16	1630	c.1485G>A	c.(1483-1485)CGG>CGA	p.R495R	EPS8L3_uc001dys.1_Silent_p.R465R|EPS8L3_uc001dyq.1_Silent_p.R496R|EPS8L3_uc009wfm.1_Silent_p.R432R|EPS8L3_uc009wfn.1_Silent_p.R440R	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	495	SH3.					cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TGTAGCCGCTCCGTCCCGCCT	0.627													10	80					0	0	1	0	0
CD53	963	broad.mit.edu	37	1	111435035	111435035	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:111435035C>T	uc001dzw.2	+	4	303	c.132C>T	c.(130-132)TTC>TTT	p.F44F	CD53_uc001dzx.2_Silent_p.F44F|CD53_uc010owa.1_Silent_p.F44F|CD53_uc001dzy.2_Silent_p.F44F	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	44	Extracellular (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		GAGTGCTCTTCCATAACCTCC	0.507													12	85					0	0	1	0	0
DENND2D	79961	broad.mit.edu	37	1	111741286	111741286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:111741286C>T	uc001eak.1	-	3	522	c.322G>A	c.(322-324)GGG>AGG	p.G108R	DENND2D_uc001eal.1_Missense_Mutation_p.G105R	NM_024901	NP_079177	Q9H6A0	DEN2D_HUMAN	DENN/MADD domain containing 2D	108	UDENN.									ovary(1)	1		all_cancers(81;0.00198)|all_epithelial(167;0.000686)|all_lung(203;0.00318)|Lung NSC(277;0.00499)		Lung(183;0.0162)|Colorectal(144;0.069)|all cancers(265;0.0757)|LUSC - Lung squamous cell carcinoma(189;0.0845)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.14)		CACTCATTCCCATCTGGGAAG	0.542													16	146					0	0	1	0	0
LOC149620	149620	broad.mit.edu	37	1	111826748	111826748	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:111826748C>T	uc009wgb.2	+	6		c.1432C>T				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						ATGTTGGATTCCCAGCCTATG	0.542													4	26					0	0	1	0	0
KCND3	3752	broad.mit.edu	37	1	112319689	112319689	+	Silent	SNP	C	T	T	rs148478583		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:112319689C>T	uc001ebu.1	-	7	2205	c.1725G>A	c.(1723-1725)ACG>ACA	p.T575T	KCND3_uc001ebv.1_Silent_p.T556T	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	575	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGATGTGGATCGTGCTGAGCT	0.552													7	47					0	0	1	0	0
KCND3	3752	broad.mit.edu	37	1	112524916	112524916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:112524916C>T	uc001ebu.1	-	2	913	c.433G>A	c.(433-435)GAG>AAG	p.E145K	KCND3_uc001ebv.1_Missense_Mutation_p.E145K	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	145	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATGAGCCGCTCGGCGTTCTCC	0.627													4	57					0	0	1	0	0
PPM1J	333926	broad.mit.edu	37	1	113253678	113253678	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:113253678G>A	uc001ect.1	-	7	1089	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	PPM1J_uc009wgl.1_RNA|PPM1J_uc001ecs.1_Silent_p.I148I	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	354	PP2C-like.									breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTCCAGCTCGATCTTTTTGT	0.562													57	409					0	0	1	0	0
PHTF1	10745	broad.mit.edu	37	1	114280858	114280858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:114280858G>A	uc009wgp.1	-	4	657	c.205C>T	c.(205-207)CCA>TCA	p.P69S	PHTF1_uc001edn.2_Missense_Mutation_p.P69S|PHTF1_uc010own.1_Missense_Mutation_p.P69S|PHTF1_uc001edp.2_Missense_Mutation_p.P69S	NM_006608	NP_006599	Q9UMS5	PHTF1_HUMAN	putative homeodomain transcription factor 1	69						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATGTCCATGGAATTTCAGGT	0.373													12	69					0	0	1	0	0
HIPK1	204851	broad.mit.edu	37	1	114511151	114511151	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:114511151C>T	uc001eem.2	+	13	2813	c.2652C>T	c.(2650-2652)GTC>GTT	p.V884V	HIPK1_uc001eel.2_Silent_p.V884V|HIPK1_uc001een.2_Silent_p.V884V|HIPK1_uc001eeo.2_Silent_p.V510V|HIPK1_uc001eep.2_Silent_p.V490V|HIPK1_uc001eeq.2_Silent_p.V176V	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	884					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATTCCTTGGTCCCTGTCCAAG	0.498													16	141					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115229433	115229433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:115229433G>A	uc001efe.1	-	4	398	c.314C>T	c.(313-315)TCA>TTA	p.S105L	AMPD1_uc001eff.1_Missense_Mutation_p.S101L	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	105					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GGTTGGAGATGAGGAAATGTA	0.453													14	94					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115489885	115489885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:115489885C>T	uc001efr.2	+	27	2475	c.2266C>T	c.(2266-2268)CTC>TTC	p.L756F	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.L756F|SYCP1_uc009wgw.2_Intron	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	756	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACTATCCAATCTCAAAGCTGA	0.318													10	57					0	0	1	0	0
TSHB	7252	broad.mit.edu	37	1	115576090	115576090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:115576090G>A	uc001efs.1	+	2	175	c.107G>A	c.(106-108)TGT>TAT	p.C36Y		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	36					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		AGGAGAGAGTGTGCTTATTGC	0.418													24	179					0	0	1	0	0
TSHB	7252	broad.mit.edu	37	1	115576594	115576594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:115576594G>A	uc001efs.1	+	3	231	c.163G>A	c.(163-165)GAT>AAT	p.D55N		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	55					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		CTTTCCCCAGGATATCAATGG	0.368													17	165					0	0	1	0	0
CD2	914	broad.mit.edu	37	1	117303215	117303215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:117303215G>A	uc001egu.3	+	3	603	c.574G>A	c.(574-576)GTC>ATC	p.V192I	CD2_uc010owz.1_Missense_Mutation_p.V192I|CD2_uc010oxa.1_Intron	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	192	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	AGGGAACAAAGTCAGCAAGGA	0.527													11	70					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117560945	117560945	+	Nonsense_Mutation	SNP	C	T	T	rs140225271		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:117560945C>T	uc010oxb.1	+	6	1838	c.1780C>T	c.(1780-1782)CGA>TGA	p.R594*	CD101_uc009whd.2_Nonsense_Mutation_p.R594*|CD101_uc010oxc.1_Nonsense_Mutation_p.R594*|CD101_uc010oxd.1_Nonsense_Mutation_p.R532*	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	594	Extracellular (Potential).|Ig-like C2-type 5.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCAGCTTATTCGAATCACCCA	0.502													9	61					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117561111	117561111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:117561111C>T	uc010oxb.1	+	6	2004	c.1946C>T	c.(1945-1947)TCC>TTC	p.S649F	CD101_uc009whd.2_Missense_Mutation_p.S649F|CD101_uc010oxc.1_Missense_Mutation_p.S649F|CD101_uc010oxd.1_Missense_Mutation_p.S587F	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	649	Extracellular (Potential).|Ig-like C2-type 5.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GACAGAAATTCCCTATACAAC	0.468													11	78					0	0	1	0	0
TTF2	8458	broad.mit.edu	37	1	117644132	117644132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:117644132C>T	uc001egy.2	+	23	3495	c.3475C>T	c.(3475-3477)CTT>TTT	p.L1159F		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	1159					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CCTCAGAGTCCTTTTTGGCAT	0.443													14	230					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118581976	118581976	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:118581976C>T	uc001ehk.2	-	23	3326	c.3258G>A	c.(3256-3258)GAG>GAA	p.E1086E		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1086						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AATCCCCTTTCTCTTCCTTTT	0.373													5	30					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427361	119427361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:119427361C>T	uc001ehl.1	-	8	1800	c.1485G>A	c.(1483-1485)ATG>ATA	p.M495I	TBX15_uc009whj.1_Missense_Mutation_p.M319I	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	601						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GCCTTTAAACCATGTGCACGG	0.532													11	109					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427755	119427755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:119427755C>T	uc001ehl.1	-	8	1406	c.1091G>A	c.(1090-1092)GGG>GAG	p.G364E	TBX15_uc009whj.1_Missense_Mutation_p.G188E	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	470						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGGAAAGGACCCCAGCTGGCC	0.572													3	40					0	0	1	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056793	120056793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:120056793G>A	uc001ehv.1	+	4	792	c.647G>A	c.(646-648)GGA>GAA	p.G216E	HSD3B1_uc001ehw.2_Missense_Mutation_p.G218E	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	216					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	TCAAGTGTTGGAAAGTTCTCC	0.522													5	58					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120293501	120293501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:120293501C>T	uc001eid.2	-	9	1502	c.1451G>A	c.(1450-1452)AGC>AAC	p.S484N	HMGCS2_uc010oxj.1_Missense_Mutation_p.S442N|HMGCS2_uc001eie.2_Missense_Mutation_p.S392N	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	484					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TGGGAAAAGGCTGTTTGTGTC	0.488													4	40					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120438559	120438559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:120438559C>T	uc001eij.2	-	1	555	c.401G>A	c.(400-402)CGA>CAA	p.R134Q		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	134					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AAATACACCTCGGAGACCCCC	0.458													8	106					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145416641	145416641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:145416641G>A	uc001eni.2	+	4	1311	c.986G>A	c.(985-987)CGA>CAA	p.R329Q	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.R103Q|HFE2_uc001enk.2_Missense_Mutation_p.R216Q|HFE2_uc001enl.2_Missense_Mutation_p.R103Q	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	329					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGACTCTCTCGATCAGAGCGC	0.552													11	60					0	0	1	0	0
LIX1L	128077	broad.mit.edu	37	1	145498121	145498121	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:145498121C>T	uc001enr.2	+	5	786	c.712C>T	c.(712-714)CAA>TAA	p.Q238*	NBPF10_uc001emp.3_Intron|LIX1L_uc009wiu.1_5'Flank	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	238										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GACAGTTTTTCAACTGCTACA	0.468													4	96					0	0	1	0	0
ITGA10	8515	broad.mit.edu	37	1	145535820	145535820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:145535820G>A	uc001eoa.2	+	16	2084	c.2008G>A	c.(2008-2010)GGC>AGC	p.G670S	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.G539S|ITGA10_uc009wiw.2_Missense_Mutation_p.G527S|ITGA10_uc010oyw.1_Missense_Mutation_p.G615S	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	670	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TAGGCGGCGAGGCCAAGAGGC	0.577													9	83					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146673043	146673043	+	Missense_Mutation	SNP	G	A	A	rs143729816		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:146673043G>A	uc001epi.2	-	7	1263	c.874C>T	c.(874-876)CGT>TGT	p.R292C	FMO5_uc001eph.3_Missense_Mutation_p.R292C|FMO5_uc001epj.2_Intron	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	292						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					GAAATGATACGATTTGGCAGG	0.448													7	96					0	0	1	0	0
ACP6	51205	broad.mit.edu	37	1	147131150	147131150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:147131150G>A	uc001epr.2	-	4	948	c.484C>T	c.(484-486)CGT>TGT	p.R162C	ACP6_uc009wjj.1_Missense_Mutation_p.R119C	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	162					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					TTAGTGGAACGAATACTGAAA	0.398													8	77					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147380580	147380580	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:147380580C>T	uc001epu.1	+	2	561	c.498C>T	c.(496-498)ATC>ATT	p.I166I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	166	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TGGGCTTCATCGTGGGCCACT	0.607													22	189					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147381247	147381247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:147381247G>A	uc001epu.1	+	2	1228	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	389	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GCCGCAGTCGGAGAAGGTGTC	0.577													4	24					0	0	1	0	0
LOC200030	200030	broad.mit.edu	37	1	148017573	148017573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:148017573G>A	uc001eqf.2	-	12	1765	c.1730C>T	c.(1729-1731)TCG>TTG	p.S577L	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pae.1_Intron|NBPF14_uc010paf.1_Intron|NBPF14_uc009wkf.1_RNA|NBPF14_uc001eqq.2_Missense_Mutation_p.S237L|NBPF14_uc001eqs.1_Missense_Mutation_p.S116L	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	577	NBPF 3.					cytoplasm					0						AGACTTGTACGAGGCCAACAT	0.478													9	472					0	0	1	0	0
VPS45	11311	broad.mit.edu	37	1	150044289	150044289	+	Silent	SNP	C	T	T	rs140400945		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:150044289C>T	uc001etp.2	+	3	858	c.285C>T	c.(283-285)TTC>TTT	p.F95F	VPS45_uc010pbp.1_RNA|VPS45_uc010pbq.1_Silent_p.F59F|VPS45_uc010pbs.1_Silent_p.F59F|VPS45_uc009wlm.1_Silent_p.F95F|VPS45_uc010pbr.1_Silent_p.F59F	NM_007259	NP_009190	Q9NRW7	VPS45_HUMAN	vacuolar protein sorting 45A	95					blood coagulation|intracellular protein transport|vesicle docking involved in exocytosis	endosome membrane|Golgi membrane|integral to membrane of membrane fraction		p.F95F(1)		central_nervous_system(1)|skin(1)	2	Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTATATATTTCATTTGTAAGT	0.333													7	78					0	0	1	0	0
PRPF3	9129	broad.mit.edu	37	1	150318954	150318954	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:150318954C>G	uc001eum.3	+	14	1992	c.1830C>G	c.(1828-1830)AAC>AAG	p.N610K	PRPF3_uc010pca.1_Missense_Mutation_p.N569K|PRPF3_uc010pcb.1_Missense_Mutation_p.N561K	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog	610					nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		AGACATCTAACACAAAGGGAG	0.483													4	75					0	0	1	0	0
ECM1	1893	broad.mit.edu	37	1	150482158	150482158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:150482158C>T	uc001eus.2	+	3	342	c.143C>T	c.(142-144)TCC>TTC	p.S48F	ECM1_uc010pce.1_5'UTR|ECM1_uc010pcf.1_5'UTR|ECM1_uc001eut.2_Missense_Mutation_p.S48F|ECM1_uc001euu.2_Missense_Mutation_p.S48F|ECM1_uc001euv.2_Missense_Mutation_p.S48F|ECM1_uc009wlu.2_5'UTR	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	48					angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCTCCCCCCTCCCCACCCCTA	0.597													24	221					0	0	1	0	0
ARNT	405	broad.mit.edu	37	1	150795738	150795738	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:150795738G>A	uc001evr.1	-	14	1469	c.1326C>T	c.(1324-1326)AGC>AGT	p.S442S	ARNT_uc001evs.1_Silent_p.S427S|ARNT_uc009wmb.1_Silent_p.S428S|ARNT_uc009wmc.1_Silent_p.S442S|ARNT_uc009wmd.1_Silent_p.S427S|ARNT_uc009wme.1_Intron|ARNT_uc010pcl.1_Silent_p.S426S	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	442	PAC.				positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			AAGTAAAGGAGCTGGTTCTCA	0.393			T	ETV6	AML								17	93					0	0	1	0	0
LINGO4	339398	broad.mit.edu	37	1	151773519	151773519	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:151773519A>G	uc001ezf.1	-	2	1852	c.1662T>C	c.(1660-1662)ATT>ATC	p.I554I		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	554	Helical; (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCCAAAGGGCAATCAGGCCAA	0.567													24	165					0	0	1	0	0
THEM5	284486	broad.mit.edu	37	1	151824892	151824892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:151824892G>A	uc009wnd.2	-	2	299	c.167C>T	c.(166-168)GCT>GTT	p.A56V		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	56							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			ATTGGGAAGAGCATAATCCTT	0.512													5	141					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059114	152059114	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152059114C>T	uc001ezo.1	-	3	1109	c.1044G>A	c.(1042-1044)AAG>AAA	p.K348K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	348							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CACCCAAATTCTTTGTTTTAG	0.423													11	210					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152082536	152082537	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152082536_152082537CC>TA	uc001ezp.2	-	2	3156_3157	c.3156_3157GG>TA	c.(3154-3159)GAGGAA>GATAAA	p.1052_1053EE>DK	TCHH_uc009wne.1_Missense_Mutation_p.1052_1053EE>DK	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1052_1053	10 X 30 AA tandem repeats.|4-5.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			agctcctcttcctccCGATATT	0.252													8	182					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152083119	152083119	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152083119C>T	uc001ezp.2	-	2	2574	c.2574G>A	c.(2572-2574)GAG>GAA	p.E858E	TCHH_uc009wne.1_Silent_p.E858E	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	858					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCCTGATCCTCCTGGAGGC	0.627													8	109					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152084023	152084023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152084023C>T	uc001ezp.2	-	2	1670	c.1670G>A	c.(1669-1671)AGG>AAG	p.R557K	TCHH_uc009wne.1_Missense_Mutation_p.R557K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	557	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCTCGAGCCTCTTCTCCTC	0.662													8	137					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152195654	152195654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152195654C>T	uc001ezt.1	-	2	152	c.76G>A	c.(76-78)GAT>AAT	p.D26N		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	26	1 (Potential).|EF-hand 1.|S-100-like.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCAACGTATCATACTCCCCA	0.413													6	147					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276186	152276186	+	Missense_Mutation	SNP	G	A	A	rs145171931	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152276186G>A	uc001ezu.1	-	3	11212	c.11176C>T	c.(11176-11178)CGG>TGG	p.R3726W		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3726	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCCAGCCCGTCCATGGGCA	0.607									Ichthyosis				14	316					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276615	152276615	+	Missense_Mutation	SNP	C	T	T	rs144652887		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152276615C>T	uc001ezu.1	-	3	10783	c.10747G>A	c.(10747-10749)GAA>AAA	p.E3583K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3583	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTCTGTCTTCGTGATGGGAC	0.557									Ichthyosis				35	203					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276755	152276755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152276755C>T	uc001ezu.1	-	3	10643	c.10607G>A	c.(10606-10608)GGA>GAA	p.G3536E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3536	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACACTGGATCCCTGGTTCCT	0.577									Ichthyosis				20	240					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276763	152276763	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152276763C>T	uc001ezu.1	-	3	10635	c.10599G>A	c.(10597-10599)AGG>AGA	p.R3533R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3533	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCCTGGTTCCTGCTTGTCC	0.577									Ichthyosis				20	239					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276920	152276920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152276920C>T	uc001ezu.1	-	3	10478	c.10442G>A	c.(10441-10443)GGA>GAA	p.G3481E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3481	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTTCTGGATCCTGACTGCCC	0.562									Ichthyosis				40	471					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277286	152277286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152277286C>T	uc001ezu.1	-	3	10112	c.10076G>A	c.(10075-10077)GGA>GAA	p.G3359E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3359	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCAGCCTGTCCATGGCCTGA	0.582									Ichthyosis				28	677					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279836	152279836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152279836C>T	uc001ezu.1	-	3	7562	c.7526G>A	c.(7525-7527)GGA>GAA	p.G2509E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2509	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTTCTGGATCCTGAGTGCCC	0.557									Ichthyosis				49	531					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280548	152280548	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152280548G>A	uc001ezu.1	-	3	6850	c.6814C>T	c.(6814-6816)CAG>TAG	p.Q2272*		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2272	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACTGCTCCTGAGCAGATCCA	0.572									Ichthyosis				8	376					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283337	152283337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152283337G>A	uc001ezu.1	-	3	4061	c.4025C>T	c.(4024-4026)GCT>GTT	p.A1342V	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1342	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGATGACACAGCCTGTCCATG	0.527									Ichthyosis				73	607					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283540	152283541	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152283540_152283541AC>CT	uc001ezu.1	-	3	3857_3858	c.3821_3822GT>AG	c.(3820-3822)AGT>AAG	p.S1274K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1274	Ser-rich.|Filaggrin 7.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCACTGTCACTGTCCTGGCT	0.421									Ichthyosis				35	313					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152325417	152325417	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:152325417C>T	uc001ezw.3	-	3	4918	c.4845G>A	c.(4843-4845)GAG>GAA	p.E1615E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1615	Filaggrin 6.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCGTGTCTCTCATGAACTG	0.522													11	225					0	0	1	0	0
SPRR2F	6705	broad.mit.edu	37	1	153085178	153085178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:153085178G>A	uc001fbi.2	-	2	91	c.32C>T	c.(31-33)CCC>CTC	p.P11L	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001014450	NP_001014450	Q96RM1	SPR2F_HUMAN	small proline-rich protein 2F	11					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGGCTGGCAGGGCTGCTTGCA	0.567													10	198					0	0	1	0	0
LELP1	149018	broad.mit.edu	37	1	153177244	153177244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:153177244C>T	uc001fbl.2	+	2	171	c.61C>T	c.(61-63)CCC>TCC	p.P21S		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	21	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAACTGCGATCCCAAGTGTGA	0.443													11	111					0	0	1	0	0
DENND4B	9909	broad.mit.edu	37	1	153905201	153905201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:153905201G>A	uc001fdd.1	-	23	4077	c.3676C>T	c.(3676-3678)CCT>TCT	p.P1226S	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1226										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGACCACCAGGGACAGGAGCA	0.622													8	71					0	0	1	0	0
PYGO2	90780	broad.mit.edu	37	1	154931799	154931799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:154931799G>A	uc001fft.2	-	3	883	c.677C>T	c.(676-678)CCT>CTT	p.P226L		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	226	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TCTCTGGAGAGGAGAAGGGCC	0.627													4	33					0	0	1	0	0
DCST2	127579	broad.mit.edu	37	1	154996433	154996433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:154996433C>T	uc001fgm.2	-	12	1825	c.1745G>A	c.(1744-1746)TGC>TAC	p.C582Y	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	582	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TAGGCAGGGGCACCTGAGAAA	0.592													3	25					0	0	1	0	0
MUC1	4582	broad.mit.edu	37	1	155162036	155162036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:155162036C>T	uc010pft.1	-	2	163	c.97G>A	c.(97-99)GGA>AGA	p.G33R	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_5'Flank|MUC1_uc001fhz.2_5'Flank|MUC1_uc010pfb.1_5'UTR|MUC1_uc010pfc.1_RNA|MUC1_uc009wph.2_5'UTR|MUC1_uc010pfd.1_Silent_p.V7V|MUC1_uc010pfe.1_RNA|MUC1_uc010pff.1_Silent_p.V81V|MUC1_uc009wpi.2_5'UTR|MUC1_uc010pfg.1_RNA|MUC1_uc010pfh.1_Silent_p.V81V|MUC1_uc010pfi.1_Silent_p.V81V|MUC1_uc010pfj.1_Silent_p.V81V|MUC1_uc010pfk.1_RNA|MUC1_uc010pfl.1_RNA|MUC1_uc001fin.2_Missense_Mutation_p.G42R|MUC1_uc009wpk.2_5'UTR|MUC1_uc001fip.2_Silent_p.V7V|MUC1_uc009wqg.2_Silent_p.V7V|MUC1_uc009wpo.2_Missense_Mutation_p.G21R|MUC1_uc009wps.2_Missense_Mutation_p.G42R|MUC1_uc009wpt.2_Missense_Mutation_p.G42R|MUC1_uc001fic.2_Missense_Mutation_p.G33R|MUC1_uc009wpu.2_RNA|MUC1_uc009wpq.2_Missense_Mutation_p.G21R|MUC1_uc009wpv.2_Silent_p.V7V|MUC1_uc001fim.2_Missense_Mutation_p.G33R|MUC1_uc001fib.2_Silent_p.V7V|MUC1_uc009wpw.2_Missense_Mutation_p.G42R|MUC1_uc001fie.2_Missense_Mutation_p.G33R|MUC1_uc009wpr.2_Missense_Mutation_p.G21R|MUC1_uc001fig.2_Missense_Mutation_p.G42R|MUC1_uc001fif.2_Missense_Mutation_p.G33R|MUC1_uc009wpx.2_Missense_Mutation_p.G42R|MUC1_uc001fid.2_Missense_Mutation_p.G33R|MUC1_uc009wpj.2_RNA|MUC1_uc001fij.2_Missense_Mutation_p.G42R|MUC1_uc009wpy.2_RNA|MUC1_uc010pfm.1_5'UTR|MUC1_uc001fiq.2_5'UTR|MUC1_uc009wpz.2_Missense_Mutation_p.G42R|MUC1_uc010pfn.1_Missense_Mutation_p.G33R|MUC1_uc009wqa.2_Silent_p.V7V|MUC1_uc010pfo.1_Silent_p.V7V|MUC1_uc010pfp.1_Silent_p.V7V|MUC1_uc001fii.2_RNA|MUC1_uc001fih.2_RNA|MUC1_uc001fia.2_Missense_Mutation_p.G33R|MUC1_uc009wqc.2_Silent_p.V7V|MUC1_uc009wqd.2_Silent_p.V7V|MUC1_uc009wqb.2_5'UTR|MUC1_uc010pfq.1_Silent_p.V7V|MUC1_uc010pfr.1_Missense_Mutation_p.G42R|MUC1_uc001fit.2_5'UTR|MUC1_uc009wqe.2_Missense_Mutation_p.G42R|MUC1_uc001fil.2_Missense_Mutation_p.G33R|MUC1_uc009wpm.2_Missense_Mutation_p.G33R|MUC1_uc009wpp.2_Missense_Mutation_p.G33R|MUC1_uc010pfs.1_RNA|MUC1_uc001fik.2_Missense_Mutation_p.G33R|MUC1_uc001fio.2_Missense_Mutation_p.G33R|MUC1_uc009wqf.2_Silent_p.V7V|MUC1_uc009wpl.2_Missense_Mutation_p.G42R|MUC1_uc009wpn.2_Missense_Mutation_p.G42R|MUC1_uc001fis.1_Missense_Mutation_p.G33R|uc009wqh.2_5'Flank|MUC1_uc001fiv.1_Missense_Mutation_p.G42R|MUC1_uc001fiw.1_Missense_Mutation_p.G33R|MIR92B_hsa-mir-92b|MI0003560_5'Flank			P15941	MUC1_HUMAN	SubName: Full=MUC1 isoform M13;	33	Extracellular (Potential).					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCCTTTTCTCCACCTGGGGTA	0.517			T	IGH@	B-NHL								14	123					0	0	1	0	0
SCAMP3	10067	broad.mit.edu	37	1	155230417	155230417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:155230417G>A	uc001fjs.2	-	3	431	c.178C>T	c.(178-180)CCA>TCA	p.P60S	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjr.2_5'Flank|SCAMP3_uc001fju.2_Missense_Mutation_p.P60S|SCAMP3_uc001fjv.2_Missense_Mutation_p.P60S|SCAMP3_uc001fjt.2_Missense_Mutation_p.P34S	NM_005698	NP_005689	O14828	SCAM3_HUMAN	secretory carrier membrane protein 3 isoform 1	60	Cytoplasmic (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane				ovary(3)	3	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGAGGCAATGGGGCAGGGGCT	0.413													9	105					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155263259	155263259	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:155263259G>A	uc001fkb.3	-	8	1278	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Silent_p.F382F	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	413					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	CTTCCACAGGGAAGTTGCCCT	0.587													6	60					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155327536	155327536	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:155327536A>C	uc009wqq.2	-	14	7295	c.6815T>G	c.(6814-6816)CTT>CGT	p.L2272R	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.L2267R	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2272	Post-SET.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ACACTTACAAAGTTGCTTTGA	0.299													8	34					0	0	1	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920664	155920664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:155920664G>A	uc001fmt.2	-	20	2777	c.2659C>T	c.(2659-2661)CTC>TTC	p.L887F	ARHGEF2_uc001fmq.2_Missense_Mutation_p.L125F|ARHGEF2_uc001fmr.2_Missense_Mutation_p.L859F|ARHGEF2_uc001fms.2_Missense_Mutation_p.L886F|ARHGEF2_uc001fmu.2_Missense_Mutation_p.L931F	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	887					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCTGCGGGGAGGCTGCGCCGC	0.672													6	131					0	0	1	0	0
SLC25A44	9673	broad.mit.edu	37	1	156170037	156170037	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:156170037C>T	uc001fnp.2	+	2	721	c.399C>T	c.(397-399)GTC>GTT	p.V133V	SLC25A44_uc010phc.1_Intron|SLC25A44_uc009wrr.2_Silent_p.V133V|SLC25A44_uc010phd.1_Intron|SLC25A44_uc010phe.1_Intron	NM_014655	NP_055470	Q96H78	S2544_HUMAN	solute carrier family 25, member 44	133	Solcar 2.|Helical; Name=3; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	Hepatocellular(266;0.158)					TTGATGTAGTCTCCCAGCACC	0.557													5	71					0	0	1	0	0
TMEM79	84283	broad.mit.edu	37	1	156261254	156261254	+	Silent	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:156261254G>T	uc010phi.1	+	4	1246	c.1050G>T	c.(1048-1050)CTG>CTT	p.L350L	TMEM79_uc001fod.2_Silent_p.L191L|TMEM79_uc009wrw.2_Silent_p.L350L|C1orf85_uc001fof.3_Intron|C1orf85_uc001fog.1_Intron	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	350	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					TGCCACTGCTGTCGATGCTGA	0.622													24	216					3.65163e-15	3.70013e-15	1	1	0
TMEM79	84283	broad.mit.edu	37	1	156261256	156261256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:156261256C>T	uc010phi.1	+	4	1248	c.1052C>T	c.(1051-1053)TCG>TTG	p.S351L	TMEM79_uc001fod.2_Missense_Mutation_p.S192L|TMEM79_uc009wrw.2_Missense_Mutation_p.S351L|C1orf85_uc001fof.3_Intron|C1orf85_uc001fog.1_Intron	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	351	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					CCACTGCTGTCGATGCTGATG	0.627													25	218					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156642784	156642784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:156642784G>A	uc001fpq.2	-	4	1329	c.1196C>T	c.(1195-1197)CCT>CTT	p.P399L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	399	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ATCTACAGCAGGAGAGGGTGC	0.612													17	222					0	0	1	0	0
ETV3	2117	broad.mit.edu	37	1	157103991	157103991	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:157103991T>C	uc001fqr.2	-	4	602	c.313A>G	c.(313-315)AAA>GAA	p.K105E	ETV3_uc001fqt.2_Missense_Mutation_p.K105E	NM_001145312	NP_001138784	P41162	ETV3_HUMAN	ets variant gene 3 isoform 1	105	ETS.						sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(266;0.158)	Prostate(1639;0.174)				CCTTTTGTTTTATGAAGGATC	0.368													5	34					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157490932	157490932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:157490932G>A	uc001fqu.2	-	11	2548	c.2390C>T	c.(2389-2391)TCG>TTG	p.S797L	FCRL5_uc009wsm.2_Missense_Mutation_p.S797L	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	797	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				AGAGGGGGACGACCTATTTCC	0.592													14	115					0	0	1	0	0
FCRL4	83417	broad.mit.edu	37	1	157545494	157545494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:157545494C>T	uc001fqw.2	-	11	1592	c.1456G>A	c.(1456-1458)GAT>AAT	p.D486N	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	486	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CTCACCTTATCCTCTAGAAGT	0.458													6	144					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667094	157667094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:157667094G>A	uc001frb.2	-	6	972	c.680C>T	c.(679-681)TCC>TTC	p.S227F	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.S227F|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.S227F	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	227	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TCTGAAGAGGGAGAATTGCAG	0.587													6	77					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157803024	157803024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:157803024G>A	uc001frk.3	-	5	1140	c.997C>T	c.(997-999)CAC>TAC	p.H333Y		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	333	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GTGCAGTCGTGAAACCCCCAA	0.552													5	121					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158261127	158261127	+	Missense_Mutation	SNP	C	T	T	rs145638725		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158261127C>T	uc001fru.2	+	2	557	c.265C>T	c.(265-267)CGT>TGT	p.R89C	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding	p.R89C(1)		ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GTTGTTATTTCGTTTCTACCT	0.398													6	87					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158262068	158262068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158262068G>A	uc001fru.2	+	3	815	c.523G>A	c.(523-525)GAA>AAA	p.E175K	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	175	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					AGGCGTCACAGAAACAGTGTA	0.463													25	281					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158323802	158323802	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158323802C>T	uc001fse.2	+	1	263	c.24C>T	c.(22-24)TTC>TTT	p.F8F	CD1E_uc010pid.1_Intron|CD1E_uc010pie.1_Silent_p.F8F|CD1E_uc010pif.1_Silent_p.F8F|CD1E_uc001fsd.2_Silent_p.F8F|CD1E_uc001fsk.2_Silent_p.F8F|CD1E_uc001fsj.2_Silent_p.F8F|CD1E_uc001fsc.2_Silent_p.F8F|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Silent_p.F8F|CD1E_uc001fsf.2_Silent_p.F8F|CD1E_uc001fry.2_Silent_p.F8F|CD1E_uc001fsg.2_Silent_p.F8F|CD1E_uc001fsh.2_Silent_p.F8F|CD1E_uc001fsi.2_Silent_p.F8F|CD1E_uc009wsv.2_Silent_p.F8F|CD1E_uc001frz.2_Silent_p.F8F|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	8					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCCTCCTCTTCGAGGGTCTCT	0.522													9	58					0	0	1	0	0
CD1E	913	broad.mit.edu	37	1	158324309	158324309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158324309G>A	uc001fse.2	+	2	440	c.201G>A	c.(199-201)TGG>TGA	p.W67*	CD1E_uc010pid.1_Nonsense_Mutation_p.W65*|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Nonsense_Mutation_p.W67*|CD1E_uc001fsk.2_Nonsense_Mutation_p.W67*|CD1E_uc001fsj.2_Nonsense_Mutation_p.W67*|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Nonsense_Mutation_p.W67*|CD1E_uc001fry.2_Nonsense_Mutation_p.W67*|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Nonsense_Mutation_p.W67*|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Nonsense_Mutation_p.W67*|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	67					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CTCATGGCTGGGACACTGTCT	0.542													5	65					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435655	158435655	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158435655T>C	uc010pij.1	+	1	304	c.304T>C	c.(304-306)TTT>CTT	p.F102L		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CATCCAAATGTTTTCCTTCCT	0.498													9	135					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158548961	158548961	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158548961C>T	uc010pin.1	-	1	729	c.729G>A	c.(727-729)AGG>AGA	p.R243R		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	243	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CTGAAGGGATCCTGAGGACAG	0.453													10	73					0	0	1	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576414	158576414	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158576414C>T	uc010pio.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGTACCTCTTCCTTTCCTTCC	0.517													16	218					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158585181	158585181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158585181C>T	uc001fst.1	-	48	6812	c.6613G>A	c.(6613-6615)GAG>AAG	p.E2205K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2205	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCTGGATCTCCTTCTGTTTT	0.458													4	103					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158590148	158590148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158590148C>T	uc001fst.1	-	44	6428	c.6229G>A	c.(6229-6231)GAA>AAA	p.E2077K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2077	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGCCGAATTTCATTCAGGGAG	0.473													4	42					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158618311	158618311	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158618311G>A	uc001fst.1	-	26	3901	c.3702C>T	c.(3700-3702)CCC>CCT	p.P1234P		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1234	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TATCTCCCAGGGGTACGAGGT	0.493													5	53					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158624467	158624467	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:158624467G>A	uc001fst.1	-	21	3169	c.2970C>T	c.(2968-2970)GCC>GCT	p.A990A		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	990	SH3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGGGGCTGCGGGCCTGGAAGT	0.468													4	58					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159283606	159283606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:159283606G>A	uc010piu.1	-	1	844	c.844C>T	c.(844-846)CAC>TAC	p.H282Y		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GTAGGGGAGTGATGAGTGTAG	0.507													5	77					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410164	159410164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:159410164G>A	uc010piv.1	+	1	616	c.616G>A	c.(616-618)GAA>AAA	p.E206K	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	206	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CACTGTCAATGAAATCCTGAC	0.438													21	140					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160124859	160124859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:160124859G>A	uc001fve.3	+	3	711	c.232G>A	c.(232-234)GAA>AAA	p.E78K	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	78	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AAGGGCAAAGGAAATCCTGAC	0.507													16	169					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160128845	160128845	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:160128845G>A	uc001fve.3	+	5	1058	c.579G>A	c.(577-579)GTG>GTA	p.V193V	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	193	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TACAAGAGGTGGTGTTGGGAG	0.493													7	69					0	0	1	0	0
COPA	1314	broad.mit.edu	37	1	160261862	160261862	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:160261862G>A	uc009wti.2	-	29	3481	c.3087C>T	c.(3085-3087)TTC>TTT	p.F1029F	COPA_uc001fvv.3_Silent_p.F1038F	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	1029					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGATGGAACGGAATTTTTCCA	0.512											OREG0013929	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	208					0	0	1	0	0
CD84	8832	broad.mit.edu	37	1	160523210	160523210	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:160523210G>A	uc001fwh.3	-	4	742	c.718C>T	c.(718-720)CTG>TTG	p.L240L	CD84_uc001fwf.3_Silent_p.L240L|CD84_uc001fwg.3_Silent_p.L240L|CD84_uc009wtn.2_Silent_p.L240L|CD84_uc001fwi.3_Silent_p.L126L|CD84_uc001fwj.2_Silent_p.L240L	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	240	Helical; (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ACTGAAGACAGAATGAGAACA	0.468													3	47					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160793296	160793296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:160793296G>A	uc001fwu.2	+	8	1590	c.1540G>A	c.(1540-1542)GGA>AGA	p.G514R	LY9_uc001fwv.2_Splice_Site_p.G500_splice|LY9_uc001fww.2_Missense_Mutation_p.G424R|LY9_uc001fwx.2_Missense_Mutation_p.G424R|LY9_uc001fwy.1_Splice_Site_p.G312_splice|LY9_uc001fwz.2_Splice_Site_p.G152_splice	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	514	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCTCTCCCAAGGATATGAGAA	0.542													3	39					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953594	161953594	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:161953594G>A	uc001gbu.2	-	8	2548	c.2124C>T	c.(2122-2124)ATC>ATT	p.I708I	OLFML2B_uc001gbt.2_Silent_p.I191I|OLFML2B_uc010pkq.1_Silent_p.I709I	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	708	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GCCTGGGGACGATCTGTGTGT	0.547													39	348					0	0	1	0	0
C1orf110	339512	broad.mit.edu	37	1	162824896	162824896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:162824896C>T	uc001gck.2	-	4	743	c.568G>A	c.(568-570)GAA>AAA	p.E190K	C1orf110_uc009wuw.1_Intron|C1orf110_uc009wux.1_Missense_Mutation_p.E189K	NM_178550	NP_848645	Q86UF4	CA110_HUMAN	hypothetical protein LOC339512	190											0						GGACCTTGTTCTATGGTGTTG	0.478													8	141					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165182897	165182897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:165182897G>A	uc001gcy.1	-	4	871	c.650C>T	c.(649-651)TCC>TTC	p.S217F	LMX1A_uc001gcz.1_Missense_Mutation_p.S217F|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	217	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GGGCTTGGAGGATACTTCAAA	0.562													5	116					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166927045	166927045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:166927045C>T	uc001gdx.1	-	2	396	c.340G>A	c.(340-342)GGA>AGA	p.G114R		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	114	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						TAGAAATCTCCCAGGGTGACA	0.473													8	70					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167852753	167852753	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:167852753G>A	uc001ger.2	-	9	1240	c.942C>T	c.(940-942)ATC>ATT	p.I314I	ADCY10_uc009wvk.2_Silent_p.I222I|ADCY10_uc010plj.1_Silent_p.I161I|ADCY10_uc009wvl.2_Silent_p.I313I|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	314	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGGCATCCTGGATGGCTGGGC	0.448													6	105					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169487738	169487738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:169487738G>A	uc001ggg.1	-	23	6402	c.6257C>T	c.(6256-6258)TCG>TTG	p.S2086L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	2086	F5/8 type C 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TTTCTTAAACGAAGAAGCTGT	0.448													3	23					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171076846	171076846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:171076846G>A	uc001ghi.2	+	4	463	c.352G>A	c.(352-354)GAT>AAT	p.D118N	FMO3_uc001ghh.2_Missense_Mutation_p.D118N|FMO3_uc010pmb.1_Missense_Mutation_p.D98N|FMO3_uc010pmc.1_Missense_Mutation_p.D55N	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	118					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TAAACATCCTGATTTTGCAAC	0.383													3	35					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171080091	171080091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:171080091G>A	uc001ghi.2	+	6	891	c.780G>A	c.(778-780)ATG>ATA	p.M260I	FMO3_uc001ghh.2_Missense_Mutation_p.M260I|FMO3_uc010pmb.1_Missense_Mutation_p.M240I|FMO3_uc010pmc.1_Missense_Mutation_p.M197I	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	260					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGAAGCAGATGAATGCAAGAT	0.438													5	94					0	0	1	0	0
FMO2	2327	broad.mit.edu	37	1	171168519	171168519	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:171168519C>T	uc001ghk.1	+	5	636	c.519C>T	c.(517-519)AGC>AGT	p.S173S	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	173					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTTCCATAGCCGCCAATACA	0.443													12	65					0	0	1	0	0
METTL13	51603	broad.mit.edu	37	1	171761353	171761353	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:171761353C>T	uc001ghz.2	+	6	2018	c.1671C>T	c.(1669-1671)GCC>GCT	p.A557A	METTL13_uc001gia.2_Silent_p.A471A|METTL13_uc001gib.2_Silent_p.A401A|METTL13_uc010pml.1_Silent_p.A556A|METTL13_uc001gic.1_5'Flank	NM_015935	NP_057019	Q8N6R0	MTL13_HUMAN	CGI-01 protein isoform 1	557							methyltransferase activity|protein binding			kidney(1)	1						ACTATATCGCCAGCTTGGCAG	0.547													14	107					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526501	173526501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:173526501C>T	uc001giz.2	-	10	1616	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	398					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTCCACTTTTCGTTCAGCGAG	0.363													10	102					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175360500	175360500	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:175360500C>T	uc001gkp.1	-	5	1512	c.1431G>A	c.(1429-1431)GGG>GGA	p.G477G	TNR_uc009wwu.1_Silent_p.G477G	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	477	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGTATTCCTCCCCAGGCTTTA	0.572													8	44					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525476	176525476	+	Silent	SNP	C	T	T	rs148899801		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:176525476C>T	uc001gkz.2	+	2	1182	c.18C>T	c.(16-18)ATC>ATT	p.I6I	PAPPA2_uc001gky.1_Silent_p.I6I|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	6					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.I6I(1)		ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTTAAAGATCCTAAGAATAA	0.517													11	119					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176760607	176760607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:176760607G>A	uc001gkz.2	+	19	6173	c.5009G>A	c.(5008-5010)GGA>GAA	p.G1670E	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1670	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTGAACAAGGATATGGGATT	0.378													6	77					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762784	176762784	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:176762784G>A	uc001gkz.2	+	20	6273	c.5109G>A	c.(5107-5109)TGG>TGA	p.W1703*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1703	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGGAGCACTGGATGGAACCTG	0.478													14	77					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176993860	176993860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:176993860G>A	uc001glc.2	-	6	1341	c.1129C>T	c.(1129-1131)CCC>TCC	p.P377S	ASTN1_uc001glb.1_Missense_Mutation_p.P377S|ASTN1_uc001gld.1_Missense_Mutation_p.P377S|ASTN1_uc009wwx.1_Missense_Mutation_p.P377S|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	377					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGACTTCGGGGAGAACCCACT	0.498													3	43					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	177133560	177133560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:177133560C>T	uc001glc.2	-	1	465	c.253G>A	c.(253-255)GAG>AAG	p.E85K	ASTN1_uc001glb.1_Missense_Mutation_p.E85K|ASTN1_uc001gld.1_Missense_Mutation_p.E85K|ASTN1_uc009wwx.1_Missense_Mutation_p.E85K	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	85					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCCGTGTTCTCCAGGTCGTCC	0.692													4	15					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249596	177249596	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:177249596G>A	uc001glf.2	+	8	1596	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G	FAM5B_uc001glg.2_Silent_p.G323G	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	428						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TCTACTGTGGGGAAAGCACCT	0.542													8	100					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177250192	177250192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:177250192G>A	uc001glf.2	+	8	2192	c.1880G>A	c.(1879-1881)TGG>TAG	p.W627*	FAM5B_uc001glg.2_Nonsense_Mutation_p.W522*	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	627						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGCCAAAACTGGACTATCACC	0.522													6	70					0	0	1	0	0
RASAL2	9462	broad.mit.edu	37	1	178425883	178425883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:178425883C>T	uc001glr.2	+	11	1941	c.1816C>T	c.(1816-1818)CCT>TCT	p.P606S	RASAL2_uc001glq.2_Missense_Mutation_p.P747S|RASAL2_uc009wxc.2_Missense_Mutation_p.P120S	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	606					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GGGGCCTCTCCCTCGTGTTCT	0.448													28	262					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179587780	179587780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:179587780G>A	uc001gnf.1	+	5	1128	c.878G>A	c.(877-879)GGA>GAA	p.G293E	TDRD5_uc010pnp.1_Missense_Mutation_p.G293E|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	293					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGACCTGGAGGAACTATCAGT	0.308													4	48					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184764950	184764950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:184764950C>T	uc001gra.2	-	14	2142	c.1948G>A	c.(1948-1950)GAT>AAT	p.D650N	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	650					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TCAGTCCCATCTGGGGGTGGG	0.562													9	78					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185902907	185902907	+	Silent	SNP	T	A	A	rs140611904		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:185902907T>A	uc001grq.1	+	11	2008	c.1779T>A	c.(1777-1779)GTT>GTA	p.V593V		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	593	Ig-like C2-type 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATTGTATGGTTTCTAGTGAAG	0.433													6	100					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067681	190067681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:190067681C>T	uc001gse.1	-	8	2000	c.1768G>A	c.(1768-1770)GAA>AAA	p.E590K	FAM5C_uc010pot.1_Missense_Mutation_p.E488K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	590						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAGCTGTTTTCATTCACAGGC	0.458													10	275					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190250839	190250839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:190250839C>T	uc001gse.1	-	3	510	c.278G>A	c.(277-279)AGA>AAA	p.R93K	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	93						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAAATTTCTTCTCTCAACTGC	0.398													5	30					0	0	1	0	0
RGS18	64407	broad.mit.edu	37	1	192127853	192127853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:192127853G>A	uc001gsg.2	+	1	262	c.86G>A	c.(85-87)GGA>GAA	p.G29E		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	29					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CATGGTTCAGGAAAAGAAGAA	0.279													5	62					0	0	1	0	0
CDC73	79577	broad.mit.edu	37	1	193218892	193218892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:193218892C>T	uc001gtb.2	+	16	1693	c.1450C>T	c.(1450-1452)CGT>TGT	p.R484C		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	484					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						TGATGAAGTTCGTCTGGATCC	0.338									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				3	45					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196714990	196714990	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:196714990G>A	uc001gtj.3	+	21	3594	c.3354G>A	c.(3352-3354)GGG>GGA	p.G1118G		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1118	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTGACAATGGGGACATTACTT	0.393													5	124					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196964876	196964876	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:196964876C>T	uc001gts.3	+	5	765	c.637C>T	c.(637-639)CAA>TAA	p.Q213*		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	213	Sushi 4.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TCCACCTCCTCAACTCTCCAA	0.333													8	49					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197032120	197032120	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:197032120G>A	uc001gtt.1	-	2	176	c.132C>T	c.(130-132)AGC>AGT	p.S44S		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	44	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GAAAGTAAAAGCTTTTAAAAG	0.358													13	88					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197070718	197070718	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:197070718T>C	uc001gtu.2	-	18	7920	c.7663A>G	c.(7663-7665)AAA>GAA	p.K2555E	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.K403E	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2555	IQ 27.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						ATAGAAGCTTTGTGTTTTTCC	0.338													4	26					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197313606	197313606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:197313606G>A	uc001gtz.2	+	3	983	c.848G>A	c.(847-849)AGA>AAA	p.R283K	CRB1_uc010poz.1_Missense_Mutation_p.R214K|CRB1_uc001gty.1_Missense_Mutation_p.R283K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Intron|CRB1_uc010ppb.1_Missense_Mutation_p.R283K|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	283	Extracellular (Potential).|EGF-like 7; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GGAGAAAACAGGTACATTTTC	0.483													5	110					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390814	197390814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:197390814G>A	uc001gtz.2	+	6	1991	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E	CRB1_uc010poz.1_Missense_Mutation_p.G550E|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.G507E|CRB1_uc010ppb.1_Missense_Mutation_p.G619E|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.G100E|CRB1_uc001gub.1_Missense_Mutation_p.G268E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	619	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTACCAGTGGGAATGACCAGC	0.418													14	122					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200143254	200143254	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:200143254A>G	uc001gvb.2	+	8	1748	c.1542A>G	c.(1540-1542)GAA>GAG	p.E514E	NR5A2_uc001gvc.2_Silent_p.E468E|NR5A2_uc009wzh.2_Silent_p.E474E|NR5A2_uc010pph.1_Silent_p.E442E	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	514					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					TGCAGGCTGAAGAATACCTCT	0.463													5	31					0	0	1	0	0
KIF14	9928	broad.mit.edu	37	1	200534574	200534574	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:200534574G>A	uc010ppk.1	-	24	4324	c.3885C>T	c.(3883-3885)AAC>AAT	p.N1295N	KIF14_uc010ppj.1_Silent_p.N804N	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1295	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						ATTGCTTACAGTTATCTTGAC	0.338													7	21					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200880585	200880585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:200880585G>A	uc001gvo.2	+	9	1249	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	C1orf106_uc010ppm.1_Missense_Mutation_p.D322N	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	407										skin(2)|ovary(1)	3						CTTCAGGGTGGATTCCTTCCG	0.632													24	267					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200969850	200969850	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:200969850C>T	uc001gvs.1	-	10	1778	c.1461G>A	c.(1459-1461)GAG>GAA	p.E487E	KIF21B_uc001gvr.1_Silent_p.E487E|KIF21B_uc009wzl.1_Silent_p.E487E|KIF21B_uc010ppn.1_Silent_p.E487E	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	487	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCACCGTAGCTCCTCGATCT	0.637													7	92					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200977979	200977979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:200977979C>T	uc001gvs.1	-	3	682	c.365G>A	c.(364-366)GGG>GAG	p.G122E	KIF21B_uc001gvr.1_Missense_Mutation_p.G122E|KIF21B_uc009wzl.1_Missense_Mutation_p.G122E|KIF21B_uc010ppn.1_Missense_Mutation_p.G122E	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	122	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GGCAATGCCCCCAAAGAGGTG	0.642													7	180					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201046067	201046067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:201046067G>A	uc001gvv.2	-	12	2035	c.1808C>T	c.(1807-1809)GCC>GTC	p.A603V		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	603	II.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	gctgatgagggCTTGGGGAAA	0.264													8	146					0	0	1	0	0
PKP1	5317	broad.mit.edu	37	1	201263115	201263115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:201263115C>T	uc001gwd.2	+	2	499	c.248C>T	c.(247-249)ACC>ATC	p.T83I	PKP1_uc001gwe.2_Missense_Mutation_p.T83I|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	83					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						TATGGGACCACCAGCAGGAGC	0.512													3	39					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202284011	202284011	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:202284011G>A	uc001gxu.2	+	17	1648	c.1648_splice	c.e17+1	p.G550_splice	LGR6_uc001gxv.2_Splice_Site_p.G498_splice|LGR6_uc009xab.2_Splice_Site|LGR6_uc001gxw.2_Splice_Site_p.G411_splice	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled							integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CCTACTCCAGGTGAGGTGGTG	0.557													3	51					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202702772	202702772	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:202702772C>T	uc001gyf.2	-	23	3782	c.3666G>A	c.(3664-3666)CGG>CGA	p.R1222R	KDM5B_uc009xag.2_Silent_p.R1258R|KDM5B_uc001gyg.1_Silent_p.R1064R	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1222	PHD-type 2.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TCTCTGACCTCCGACAATGGG	0.517													5	35					0	0	1	0	0
FMOD	2331	broad.mit.edu	37	1	203317043	203317043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:203317043G>A	uc001gzr.2	-	2	492	c.356C>T	c.(355-357)TCC>TTC	p.S119F	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	119	LRR 1.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			TTCCTGGATGGAGGTGATCTG	0.542													5	35					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204981968	204981969	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:204981968_204981969GG>AA	uc001hbj.2	+	29	3793_3794	c.3465_3466GG>AA	c.(3463-3468)AAGGAA>AAAAAA	p.E1156K	NFASC_uc010pra.1_Missense_Mutation_p.E1090K|NFASC_uc001hbi.2_Missense_Mutation_p.E1085K|NFASC_uc010prb.1_Missense_Mutation_p.E1105K|NFASC_uc010prc.1_Missense_Mutation_p.E656K|NFASC_uc001hbl.1_Missense_Mutation_p.E232K|NFASC_uc001hbm.1_Missense_Mutation_p.E179K|NFASC_uc009xbh.1_Missense_Mutation_p.R10K|NFASC_uc001hbo.1_Missense_Mutation_p.R31K	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1263	Cytoplasmic (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AAGACCCCAAGGAAGAGGATGG	0.54													4	103					0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205138587	205138587	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:205138587A>G	uc001hbw.2	-	3	1092	c.1028T>C	c.(1027-1029)TTG>TCG	p.L343S	DSTYK_uc001hbx.2_Missense_Mutation_p.L343S|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	343						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						AAATGTGCTCAAGTGTCTCAG	0.527													6	92					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205561330	205561330	+	Silent	SNP	C	T	T	rs147933600		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:205561330C>T	uc001hcv.3	+	7	1298	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	MFSD4_uc010prk.1_Silent_p.F317F|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.F349F|MFSD4_uc009xbn.2_RNA	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	404	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TCTTCCTGTTCGTGGGGACGG	0.607											OREG0014160	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	62					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207109156	207109156	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:207109156C>T	uc001hez.2	-	5	1237	c.1053G>A	c.(1051-1053)ACG>ACA	p.T351T	PIGR_uc009xbz.2_Silent_p.T351T	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	351	Ig-like V-type 3.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TGCGGGGAATCGTGGACTCTG	0.607											OREG0014186	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	59					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207737283	207737283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:207737283G>A	uc001hfy.2	+	14	2451	c.2311G>A	c.(2311-2313)GAA>AAA	p.E771K	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Missense_Mutation_p.E1221K|CR1_uc009xck.1_Intron	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	771	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ACCCGGGCAGGAAGTGTTCTA	0.582													7	107					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207870992	207870992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:207870992G>A	uc001hga.3	+	6	1128	c.1007G>A	c.(1006-1008)GGA>GAA	p.G336E	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	336	Sushi 5.					cytoplasm|extracellular region|membrane					0						ACACCCCAGGGAGACTGGAGC	0.517													6	159					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210856645	210856645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:210856645C>T	uc001hib.2	-	11	3118	c.2948G>A	c.(2947-2949)AGA>AAA	p.R983K	KCNH1_uc001hic.2_Missense_Mutation_p.R956K	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	983	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AAAAATGTCTCTCTCTGATTC	0.468													7	154					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	211380928	211380928	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:211380928G>A	uc001hid.2	+	1	540	c.348G>A	c.(346-348)GTG>GTA	p.V116V						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		TTTACTGTGTGAACTCTGACA	0.532													4	51					0	0	1	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213415434	213415434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:213415434G>A	uc010ptr.1	+	11	2774	c.2615G>A	c.(2614-2616)AGT>AAT	p.S872N	RPS6KC1_uc001hkd.2_Missense_Mutation_p.S860N|RPS6KC1_uc010pts.1_Missense_Mutation_p.S660N|RPS6KC1_uc010ptt.1_Missense_Mutation_p.S660N|RPS6KC1_uc010ptu.1_Missense_Mutation_p.S691N|RPS6KC1_uc010ptv.1_Missense_Mutation_p.S407N|RPS6KC1_uc001hke.2_Missense_Mutation_p.S691N	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	872	Protein kinase 2.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		AAGGGTGAAAGTGGTTTAGTG	0.403													4	66					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215814029	215814029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:215814029C>T	uc001hku.1	-	68	15226	c.14839G>A	c.(14839-14841)GTG>ATG	p.V4947M		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4947	Fibronectin type-III 35.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTCACACACACCACAGACAAA	0.532										HNSCC(13;0.011)			6	92					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215955512	215955512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:215955512G>A	uc001hku.1	-	54	10999	c.10612C>T	c.(10612-10614)CGA>TGA	p.R3538*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3538	Extracellular (Potential).|Fibronectin type-III 20.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTCCATTTCGAAGAAGGATG	0.343										HNSCC(13;0.011)			4	39					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215972435	215972435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:215972435G>A	uc001hku.1	-	50	10159	c.9772C>T	c.(9772-9774)CGG>TGG	p.R3258W		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3258	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding	p.R3258R(1)		ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGAAACCCGATTGTGCTGT	0.423										HNSCC(13;0.011)			3	18					0	0	1	0	0
IARS2	55699	broad.mit.edu	37	1	220315268	220315268	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:220315268C>T	uc001hmc.2	+	20	2642	c.2538C>T	c.(2536-2538)TTC>TTT	p.F846F	IARS2_uc001hmd.2_Silent_p.F182F	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	846					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	AAGAGGTGTTCCAGCACATAC	0.388													4	97					0	0	1	0	0
MARK1	4139	broad.mit.edu	37	1	220791732	220791732	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:220791732C>G	uc001hmn.3	+	8	1230	c.633C>G	c.(631-633)AAC>AAG	p.N211K	MARK1_uc009xdw.2_Missense_Mutation_p.N211K|MARK1_uc010pun.1_Missense_Mutation_p.N211K|MARK1_uc001hmm.3_Missense_Mutation_p.N189K	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	211	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		CAGTTGGGAACAAATTGGACA	0.413													5	37					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696060	222696060	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:222696060C>T	uc001hnh.1	-	9	2116	c.2058G>A	c.(2056-2058)AAG>AAA	p.K686K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	686					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CTCTGGCTTTCTTCTTTGTAC	0.577													12	327					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717004	222717004	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:222717004G>A	uc001hnh.1	-	2	907	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	283					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GATTGTGGCGGAATTTGGGGT	0.488													15	138					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223401022	223401022	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:223401022G>A	uc001hnx.2	-	6	1609	c.975C>T	c.(973-975)TTC>TTT	p.F325F	SUSD4_uc001hny.3_Silent_p.F325F|SUSD4_uc010puw.1_Silent_p.F165F	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	325	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		TGGTTGCCGTGAACGCCACAA	0.587													3	42					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223567889	223567889	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:223567889C>T	uc001hoa.2	+	1	1175	c.1072C>T	c.(1072-1074)CAG>TAG	p.Q358*		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	358										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GAGCCCGCGCCAGGAGAAGCT	0.692													3	14					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223568504	223568504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:223568504G>A	uc001hoa.2	+	1	1790	c.1687G>A	c.(1687-1689)GAG>AAG	p.E563K		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	563	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GGGCATCAAGGAGGCCATTAA	0.532													7	58					0	0	1	0	0
LEFTY2	7044	broad.mit.edu	37	1	226128611	226128611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:226128611C>T	uc001hpt.1	-	1	310	c.230G>A	c.(229-231)AGG>AAG	p.R77K	LEFTY2_uc010pvk.1_Missense_Mutation_p.R77K|LEFTY2_uc009xek.1_Missense_Mutation_p.R77K	NM_003240	NP_003231	O00292	LFTY2_HUMAN	endometrial bleeding associated factor	77					cell growth|multicellular organismal development|platelet activation|platelet degranulation|transforming growth factor beta receptor signaling pathway	extracellular space|platelet alpha granule lumen	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CTGGCTGAACCTCTTTCCGCG	0.687													3	88					0	0	1	0	0
ITPKB	3707	broad.mit.edu	37	1	226923450	226923450	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:226923450G>A	uc010pvo.1	-	2	2050	c.1710C>T	c.(1708-1710)ATC>ATT	p.I570I	ITPKB_uc001hqh.2_Silent_p.I570I	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	570							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				TGTCTGTAATGATGACAGCAG	0.612													9	37					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227387341	227387341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:227387341G>A	uc001hqr.2	-	4	1310	c.367C>T	c.(367-369)CGT>TGT	p.R123C	CDC42BPA_uc001hqs.2_Missense_Mutation_p.R123C|CDC42BPA_uc009xes.2_Missense_Mutation_p.R123C|CDC42BPA_uc010pvs.1_Missense_Mutation_p.R123C	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	123	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				CTTTCTTCACGAAAACATGCT	0.284													6	49					0	0	1	0	0
ZNF678	339500	broad.mit.edu	37	1	227842052	227842052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:227842052C>T	uc001hqw.1	+	4	446	c.101C>T	c.(100-102)TCC>TTC	p.S34F	ZNF678_uc009xet.1_RNA|ZNF678_uc009xeu.1_RNA	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	89					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				TTATCTTATTCCATTCAAGAC	0.299													5	55					0	0	1	0	0
ZNF678	339500	broad.mit.edu	37	1	227843146	227843146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:227843146C>T	uc001hqw.1	+	4	1540	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	454					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				TAGGAGAATTCATACTGGAGT	0.383													4	36					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228524724	228524724	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:228524724G>A	uc009xez.1	+	65	16601	c.16557G>A	c.(16555-16557)AAG>AAA	p.K5519K	OBSCN_uc001hsn.2_Silent_p.K5519K|OBSCN_uc001hsr.1_Silent_p.K147K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5519					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGCTGCCAAGGAGGCCCTCG	0.507													4	17					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229773938	229773938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:229773938C>T	uc001hts.1	+	4	3714	c.3578C>T	c.(3577-3579)CCC>CTC	p.P1193L	URB2_uc009xfd.1_Missense_Mutation_p.P1193L	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1193						nucleolus				central_nervous_system(2)|ovary(1)	3						GAACTGCATCCCAAAAAGGAC	0.448													11	128					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232581470	232581470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:232581470G>A	uc001hvg.2	-	9	3316	c.3158C>T	c.(3157-3159)CCC>CTC	p.P1053L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.P127L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1053					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				ATACTCGCAGGGGGTGCCCTC	0.597													9	183					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232650684	232650684	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:232650684G>A	uc001hvg.2	-	1	560	c.402C>T	c.(400-402)TTC>TTT	p.F134F		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	134					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TGGCCTCCACGAAGTCCAGAT	0.502													7	138					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233193016	233193016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:233193016G>A	uc001hvl.2	-	24	4332	c.4097C>T	c.(4096-4098)TCC>TTC	p.S1366F	PCNXL2_uc001hvk.1_Missense_Mutation_p.S18F|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1366						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TCTTGTGTTGGAATTATCCAC	0.408													3	20					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394618	233394618	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:233394618G>A	uc001hvl.2	-	5	1225	c.990C>T	c.(988-990)TCC>TCT	p.S330S	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	330						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CTACCTGACAGGATGTGTCTG	0.557													4	74					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514958	233514958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:233514958G>A	uc001hvt.3	+	9	2467	c.2206G>A	c.(2206-2208)GGA>AGA	p.G736R	KIAA1804_uc001hvu.3_Missense_Mutation_p.G182R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	736					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GGTGGCTCTGGGACTGGACCT	0.527													7	79					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518169	233518169	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:233518169C>T	uc001hvt.3	+	10	3084	c.2823C>T	c.(2821-2823)ATC>ATT	p.I941I	KIAA1804_uc001hvu.3_Silent_p.I387I	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	941					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CTGTCCACATCGTGCCTCAGC	0.612													13	95					0	0	1	0	0
EDARADD	128178	broad.mit.edu	37	1	236645648	236645648	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:236645648T>C	uc001hxu.1	+	6	412	c.347T>C	c.(346-348)CTC>CCC	p.L116P	EDARADD_uc001hxv.1_Missense_Mutation_p.L106P	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	116					cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGTGACTTGCTCAATGATCAG	0.483													6	106					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236882221	236882221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:236882221G>A	uc001hyf.2	+	3	473	c.269G>A	c.(268-270)GGA>GAA	p.G90E	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Missense_Mutation_p.G90E	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	90	CH 1.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CCTGACCGGGGAAAAATGCGG	0.473													4	61					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237617733	237617733	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:237617733C>T	uc001hyl.1	+	15	1455	c.1335C>T	c.(1333-1335)GTC>GTT	p.V445V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	445	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTCCACAGTCGATTTGCCTA	0.423													3	33					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237620018	237620018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:237620018C>T	uc001hyl.1	+	16	1715	c.1595C>T	c.(1594-1596)TCT>TTT	p.S532F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	532	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATTCTGAATTCTCTGTATGAG	0.383													3	58					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240286504	240286504	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:240286504C>T	uc010pyd.1	+	2	1866	c.1641C>T	c.(1639-1641)TTC>TTT	p.F547F	FMN2_uc010pye.1_Silent_p.F547F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	547					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGAAGCTGTTCAGCCAGCAGG	0.547													10	70					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370123	240370123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:240370123G>A	uc010pyd.1	+	5	2236	c.2011G>A	c.(2011-2013)GGA>AGA	p.G671R	FMN2_uc010pye.1_Missense_Mutation_p.G675R	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	671	Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAAGTCTGAGGGACAGGCCAC	0.423													3	64					0	0	1	0	0
OPN3	23596	broad.mit.edu	37	1	241761094	241761094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:241761094G>A	uc001hza.2	-	3	1044	c.899C>T	c.(898-900)TCG>TTG	p.S300L	OPN3_uc001hzb.2_RNA|OPN3_uc001hzc.2_RNA	NM_014322	NP_055137	Q9H1Y3	OPN3_HUMAN	opsin 3	300	Helical; Name=7; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|visual perception	integral to plasma membrane	G-protein coupled photoreceptor activity				0	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			TACAGTGTTCGATTTAGCAAA	0.393													7	74					0	0	1	0	0
WDR64	128025	broad.mit.edu	37	1	241907714	241907714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:241907714G>A	uc001hze.1	+	12	1667	c.1460G>A	c.(1459-1461)GGG>GAG	p.G487E	WDR64_uc001hzf.1_Missense_Mutation_p.G207E			B1ANS9	WDR64_HUMAN	RecName: Full=WD repeat-containing protein 64;	487	WD 6.									skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CTCGAGACTGGGCTCCAAGTA	0.403													6	31					0	0	1	0	0
WDR64	128025	broad.mit.edu	37	1	241964495	241964495	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:241964495T>C	uc001hzf.1	+	17	2036	c.1883T>C	c.(1882-1884)TTC>TCC	p.F628S	WDR64_uc001hzg.1_Missense_Mutation_p.F541S	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	1075										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			GCTTCTTCCTTCTTCCCAGCT	0.388													8	67					0	0	1	0	0
EXO1	9156	broad.mit.edu	37	1	242042276	242042276	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:242042276T>C	uc001hzh.2	+	13	2280	c.1740T>C	c.(1738-1740)TTT>TTC	p.F580F	EXO1_uc001hzi.2_Silent_p.F580F|EXO1_uc001hzj.2_Silent_p.F580F|EXO1_uc009xgq.2_Silent_p.F579F	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	580					meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			CAACAGTGTTTACAGATGAAG	0.413								Direct_reversal_of_damage|Editing_and_processing_nucleases					7	103					0	0	1	0	0
ZNF238	10472	broad.mit.edu	37	1	244218280	244218280	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:244218280T>C	uc001iae.2	+	1	1699	c.1177T>C	c.(1177-1179)TTC>CTC	p.F393L	ZNF238_uc001iad.3_Missense_Mutation_p.F402L|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	393	Interaction with DNMT3A.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			GAGCACGCACTTCCGCGAGCA	0.622													11	68					0	0	1	0	0
C1orf100	200159	broad.mit.edu	37	1	244541927	244541927	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:244541927C>A	uc001iah.2	+	4	424	c.311C>A	c.(310-312)CCA>CAA	p.P104Q	C1orf100_uc001iai.2_Missense_Mutation_p.P72Q	NM_001012970	NP_001012988	Q5SVJ3	CA100_HUMAN	hypothetical protein LOC200159	104											0	all_cancers(71;3.94e-05)|all_epithelial(71;0.000138)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|all_lung(81;0.0736)|Ovarian(71;0.0761)|Lung NSC(105;0.103)		all cancers(7;8.19e-08)|GBM - Glioblastoma multiforme(7;2.05e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.000984)			TATTCTCTGCCATTTTATGAG	0.448													9	108					1.61879e-10	1.63742e-10	1	1	0
C1orf101	257044	broad.mit.edu	37	1	244716054	244716054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:244716054C>T	uc001iam.2	+	9	1026	c.967C>T	c.(967-969)CCT>TCT	p.P323S	C1orf101_uc001iak.1_Intron|C1orf101_uc001ial.2_Missense_Mutation_p.P323S|C1orf101_uc010pym.1_Missense_Mutation_p.P172S|C1orf101_uc010pyn.1_Missense_Mutation_p.P256S	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	323	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			TGTAAATCTTCCTGATGGTGG	0.294													11	110					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247582291	247582291	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247582291G>A	uc001icr.2	+	3	333	c.195G>A	c.(193-195)GAG>GAA	p.E65E	NLRP3_uc001ics.2_Silent_p.E65E|NLRP3_uc001icu.2_Silent_p.E65E|NLRP3_uc001icw.2_Silent_p.E65E|NLRP3_uc001icv.2_Silent_p.E65E|NLRP3_uc010pyw.1_Silent_p.E63E|NLRP3_uc001ict.1_Silent_p.E63E	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	65	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ATGGGGAGGAGAAGGCGTGGG	0.562													5	50					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587615	247587615	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247587615C>T	uc001icr.2	+	5	1008	c.870C>T	c.(868-870)ATC>ATT	p.I290I	NLRP3_uc001ics.2_Silent_p.I290I|NLRP3_uc001icu.2_Silent_p.I290I|NLRP3_uc001icw.2_Silent_p.I290I|NLRP3_uc001icv.2_Silent_p.I290I|NLRP3_uc010pyw.1_Silent_p.I288I|NLRP3_uc001ict.1_Silent_p.I288I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	290	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCACAAGATCGTGAGAAAAC	0.562													5	108					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614472	247614472	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247614472G>A	uc010pyx.1	-	1	813	c.813C>T	c.(811-813)TCC>TCT	p.S271S		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CCTGCTCTTGGGAGTAGCTGG	0.493													14	154					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614640	247614640	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247614640C>T	uc010pyx.1	-	1	645	c.645G>A	c.(643-645)CTG>CTA	p.L215L		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GGATGAGAGCCAGGGGCACCA	0.587													5	45					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247694920	247694920	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247694920C>T	uc009xgy.2	-	2	1256	c.894G>A	c.(892-894)GTG>GTA	p.V298V	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GGGCGCTCTTCACCTCCGTGT	0.532													7	75					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247751844	247751844	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247751844G>A	uc010pyy.1	+	1	183	c.183G>A	c.(181-183)CCG>CCA	p.P61P		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TTCATATGCCGATGTATTTCT	0.433													4	108					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247752387	247752387	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247752387G>A	uc010pyy.1	+	1	726	c.726G>A	c.(724-726)GGG>GGA	p.G242G		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGCATTCGGGACCTGCTTCT	0.408													4	45					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769183	247769183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247769183C>T	uc010pyz.1	+	1	296	c.296C>T	c.(295-297)GCG>GTG	p.A99V		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGTTGTGTGGCGCAACTCTAT	0.483													22	195					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769361	247769361	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247769361C>T	uc010pyz.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTTCCCTAATCCATGCAACTT	0.488													5	69					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835623	247835623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247835623G>A	uc001idi.1	-	1	721	c.721C>T	c.(721-723)CAT>TAT	p.H241Y		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ACTGTGAGATGAGATGAGCAT	0.443													6	49					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247836167	247836167	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:247836167G>A	uc001idi.1	-	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTGTCAGAAGGAAAACATACA	0.418													4	28					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004513	248004513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248004513G>A	uc001idn.1	-	1	686	c.686C>T	c.(685-687)CCT>CTT	p.P229L		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGAGGTGGAAGGGATTCTCAA	0.498													3	64					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004519	248004519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248004519C>T	uc001idn.1	-	1	680	c.680G>A	c.(679-681)AGA>AAA	p.R227K		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGAAGGGATTCTCAATATGGA	0.493													3	57					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059176	248059176	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248059176C>T	uc001idp.1	+	3	557	c.288C>T	c.(286-288)GGC>GGT	p.G96G	OR2W3_uc010pzb.1_Silent_p.G96G	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GCTACATGGGCTGTGCCATCC	0.572													6	104					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084538	248084538	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248084538C>T	uc010pzc.1	+	1	219	c.219C>T	c.(217-219)TCC>TCT	p.S73S		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGCTGGTTTCCACCACTGTGC	0.572													6	103					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112360	248112360	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248112360C>T	uc001idt.1	+	1	201	c.201C>T	c.(199-201)CTC>CTT	p.L67L	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			AGCTCTCCCTCATTGACCTAA	0.443													41	337					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248262875	248262875	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248262875C>T	uc001ids.2	+	3	535	c.198C>T	c.(196-198)TCC>TCT	p.S66S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GCCAGCTCTCCCTTATGGACC	0.537													5	172					0	0	1	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285683	248285683	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248285683C>T	uc001idy.1	+	1	246	c.246C>T	c.(244-246)ATC>ATT	p.I82I		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						TCTCCTGGATCCTGGGCTCTA	0.448													13	150					0	0	1	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285922	248285922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248285922C>T	uc001idy.1	+	1	485	c.485C>T	c.(484-486)TCT>TTT	p.S162F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						CACATGGGATCTGGAGAGGGT	0.448													7	192					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366416	248366416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248366416G>A	uc010pzg.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATCCTCCTGGGAATCTTCAAT	0.463													8	213					0	0	1	0	0
OR2T4	127074	broad.mit.edu	37	1	248524937	248524937	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248524937A>T	uc001ieh.1	+	1	55	c.55A>T	c.(55-57)ATG>TTG	p.M19L		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTCATCCTGATGGGACTCTT	0.488													3	54					0	0	1	0	0
OR2T4	127074	broad.mit.edu	37	1	248525106	248525106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248525106C>T	uc001ieh.1	+	1	224	c.224C>T	c.(223-225)GCT>GTT	p.A75V		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	75	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTGGAAATGCTGTCCTGATC	0.463													8	234					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616379	248616379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248616379C>T	uc001iek.1	+	1	281	c.281C>T	c.(280-282)TCC>TTC	p.S94F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAGACCATTTCCTTCCTGGGC	0.522													7	208					0	0	1	0	0
OR2T3	343173	broad.mit.edu	37	1	248637009	248637009	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248637009C>T	uc001iel.1	+	1	358	c.358C>T	c.(358-360)CTG>TTG	p.L120L		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGTTTTCCTCCTGGCTGCCAT	0.567													3	45					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248790184	248790184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248790184C>T	uc001ier.1	-	1	246	c.246G>A	c.(244-246)ATG>ATA	p.M82I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTTAGAAACCATGTCTGCCA	0.502													6	25					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248790365	248790365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:248790365C>T	uc001ier.1	-	1	65	c.65G>A	c.(64-66)GGG>GAG	p.G22E		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAATACAATCCCGGCAGCCTC	0.537													4	79					0	0	1	0	0
SH3BP5L	80851	broad.mit.edu	37	1	249107282	249107282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:249107282G>A	uc001iew.1	-	6	1169	c.617C>T	c.(616-618)GCT>GTT	p.A206V	SH3BP5L_uc010pzp.1_Missense_Mutation_p.A99V|SH3BP5L_uc010pzq.1_Missense_Mutation_p.A174V|SH3BP5L_uc001iev.1_Missense_Mutation_p.A87V	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	206	Potential.										0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			TTGGACCCGAGCCTCAGCCTG	0.637													14	29					0	0	1	0	0
TUBB8	347688	broad.mit.edu	37	10	94617	94617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:94617G>A	uc001ifi.2	-	3	215	c.215C>T	c.(214-216)ACC>ATC	p.T72I	TUBB8_uc009xhe.2_Intron|TUBB8_uc010pzs.1_5'UTR	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	72					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		AGAGTCCATGGTGCCCGGCTC	0.697													11	100					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	395335	395335	+	Silent	SNP	G	C	C	rs142078818	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:395335G>C	uc001ifp.2	-	25	3135	c.3045C>G	c.(3043-3045)GCC>GCG	p.A1015A	DIP2C_uc009xhi.1_Silent_p.A401A	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1015						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TCAGCATCACGGCGATCTTCT	0.617													6	77					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	409160	409160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:409160G>A	uc001ifp.2	-	21	2659	c.2569C>T	c.(2569-2571)CAG>TAG	p.Q857*	DIP2C_uc009xhi.1_Nonsense_Mutation_p.Q243*|DIP2C_uc010pzz.1_Nonsense_Mutation_p.Q178*	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	857						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTCATCCACTGGAAACTGTCC	0.597													5	83					0	0	1	0	0
ADARB2	105	broad.mit.edu	37	10	1313163	1313163	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:1313163G>A	uc009xhq.2	-	4	1553	c.1179C>T	c.(1177-1179)ATC>ATT	p.I393I		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	393					mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		TGGTCATGACGATTCCTGCCA	0.532													4	21					0	0	1	0	0
AKR1C4	1109	broad.mit.edu	37	10	5246352	5246352	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:5246352T>G	uc001ihw.2	+	3	298	c.265T>G	c.(265-267)TTC>GTC	p.F89V		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	89					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	TTGGTGCACTTTCTTTCAACC	0.363													11	91					0	0	1	0	0
CALML3	810	broad.mit.edu	37	10	5567436	5567436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:5567436G>A	uc001iie.1	+	1	513	c.388G>A	c.(388-390)GAC>AAC	p.D130N	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	130	4.|EF-hand 4.						calcium ion binding				0						CCGGGCCGCGGACACGGACGG	0.682													4	63					0	0	1	0	0
ANKRD16	54522	broad.mit.edu	37	10	5929972	5929972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:5929972C>T	uc010qat.1	-	2	916	c.373G>A	c.(373-375)GAA>AAA	p.E125K	ANKRD16_uc009xie.2_Missense_Mutation_p.E125K|ANKRD16_uc009xif.2_Missense_Mutation_p.E125K|ANKRD16_uc001iiq.2_Missense_Mutation_p.E125K|FBXO18_uc001iir.2_5'Flank|FBXO18_uc001iis.2_5'Flank|FBXO18_uc009xig.2_5'Flank	NM_019046	NP_061919	Q6P6B7	ANR16_HUMAN	ankyrin repeat domain 16 isoform a	125	ANK 3.										0						GCGCCATGTTCCACCAGCTCC	0.557													17	142					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6498690	6498690	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:6498690T>C	uc001ijj.1	-	15	1668	c.1593A>G	c.(1591-1593)TTA>TTG	p.L531L	PRKCQ_uc009xim.1_Silent_p.L531L|PRKCQ_uc001iji.1_Silent_p.L564L|PRKCQ_uc009xin.1_Silent_p.L495L|PRKCQ_uc010qax.1_Silent_p.L406L	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	531	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TGGCATCTCCTAACATGTTCT	0.493													4	63					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7679270	7679270	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:7679270G>A	uc001ijq.2	-	5	652	c.573C>T	c.(571-573)ATC>ATT	p.I191I	ITIH5_uc001ijr.1_Silent_p.I191I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	191					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CGCTCTCCAGGATATTCACGT	0.652													7	98					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7768995	7768995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:7768995G>A	uc001ijs.2	+	10	1229	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	356	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAGAACATTCGAACTTGGAGA	0.403													9	91					0	0	1	0	0
TAF3	83860	broad.mit.edu	37	10	8051084	8051084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:8051084C>T	uc010qbd.1	+	5	2359	c.2359C>T	c.(2359-2361)CCC>TCC	p.P787S		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	787	Pro-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						CAAGCCGGCGCCCTCGCAGAA	0.328													8	117					0	0	1	0	0
ACBD7	414149	broad.mit.edu	37	10	15059002	15059002	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:15059002C>T	uc010qby.1	-	7	498	c.189G>A	c.(187-189)TGG>TGA	p.W63*				Q8N6N7	ACBD7_HUMAN	SubName: Full=cDNA FLJ52263, highly similar to Artemis protein (EC 3.1.-.-);	Error:Variant_position_missing_in_Q8N6N7_after_alignment							fatty-acyl-CoA binding				0						TCTGAGTGATCCAGCTTTGAA	0.448													14	189					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15590553	15590553	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:15590553G>A	uc001ioc.1	-	27	2781	c.2781C>T	c.(2779-2781)ATC>ATT	p.I927I	ITGA8_uc010qcb.1_Silent_p.I912I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	927	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GTAAACACTCGATATTTGTAC	0.453													5	43					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15714669	15714669	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:15714669T>A	uc001ioc.1	-	7	756	c.756A>T	c.(754-756)GAA>GAT	p.E252D	ITGA8_uc010qcb.1_Missense_Mutation_p.E252D	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	252	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CCGTCTGCTTTTCTCCTGCCA	0.403													6	62					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	17083065	17083065	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:17083065T>C	uc001ioo.2	-	27	4036	c.3984A>G	c.(3982-3984)GAA>GAG	p.E1328E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1328	CUB 8.	Calcium 4.			cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTATGTGATGTTCCAAGTCAA	0.388													9	148					0	0	1	0	0
SLC39A12	221074	broad.mit.edu	37	10	18292127	18292127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:18292127G>A	uc001ipo.2	+	12	2060	c.1787G>A	c.(1786-1788)GGA>GAA	p.G596E	SLC39A12_uc001ipn.2_Missense_Mutation_p.G559E|SLC39A12_uc001ipp.2_Missense_Mutation_p.G595E|SLC39A12_uc010qck.1_Missense_Mutation_p.G462E|uc001ipq.1_RNA	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	596	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TTAAGCTCTGGACTTTCTATG	0.398													10	121					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21124509	21124509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:21124509C>T	uc001iqi.2	-	14	1779	c.1382G>A	c.(1381-1383)GGA>GAA	p.G461E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	461	Nebulin 13.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AGCTTGCATTCCTTTCCCTTT	0.448													11	191					0	0	1	0	0
C10orf113	387638	broad.mit.edu	37	10	21414812	21414812	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:21414812G>A	uc001iqm.2	-	2	398	c.378C>T	c.(376-378)TTC>TTT	p.F126F	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	136										ovary(3)|pancreas(1)	4						TTATGCCCTGGAATTTAAATC	0.433													11	126					0	0	1	0	0
C10orf140	387640	broad.mit.edu	37	10	21805172	21805172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:21805172G>A	uc009xkd.2	-	4	3833	c.1580C>T	c.(1579-1581)CCC>CTC	p.P527L	uc001iqp.1_RNA	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	hypothetical protein LOC387640	446						nucleus	nucleotide binding			ovary(1)	1						AGATGCTTTGGGGGCCCAGCT	0.562													3	60					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24873956	24873957	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:24873956_24873957GG>AA	uc001isb.2	-	26	5748_5749	c.5261_5262CC>TT	c.(5260-5262)TCC>TTT	p.S1754F	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1753	Interaction with CTNNA1.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						CCTGTTTTTCGGATTCGCCTCT	0.441													8	93					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25701206	25701206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:25701206G>A	uc001isj.2	+	4	1199	c.1139G>A	c.(1138-1140)GGA>GAA	p.G380E		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	380	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CATATTTCAGGAAGTACAAAA	0.468													13	123					0	0	1	0	0
LOC387646	387646	broad.mit.edu	37	10	27538399	27538399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:27538399C>T	uc001its.2	-	1	2837	c.994G>A	c.(994-996)GAT>AAT	p.D332N		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						AGCCCCAAATCCAAAGGTTGA	0.507													32	279					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687621	27687621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:27687621C>T	uc001itu.2	-	4	2024	c.1906G>A	c.(1906-1908)GAT>AAT	p.D636N		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	636					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ATGTAGGAATCGTCACTTGCC	0.353													6	90					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702367	27702367	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:27702367G>A	uc001itu.2	-	1	931	c.813C>T	c.(811-813)GCC>GCT	p.A271A		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	271					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TCACCTGCCAGGCGTACAGGA	0.622													8	58					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702837	27702837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:27702837G>A	uc001itu.2	-	1	461	c.343C>T	c.(343-345)CAC>TAC	p.H115Y		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	115					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAGTCGGTGTGACAGCGGTGC	0.697													5	46					0	0	1	0	0
MKX	283078	broad.mit.edu	37	10	28023626	28023626	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:28023626T>A	uc001ity.3	-	5	822	c.597A>T	c.(595-597)AAA>AAT	p.K199N	MKX_uc001itx.3_Missense_Mutation_p.K199N	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	199					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCACTCCCGCTTTGATGACCG	0.488													14	111					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28233271	28233271	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:28233271C>T	uc009xky.2	-	12	1721	c.1623G>A	c.(1621-1623)GTG>GTA	p.V541V	ARMC4_uc010qds.1_Silent_p.V66V|ARMC4_uc010qdt.1_Silent_p.V233V|ARMC4_uc001itz.2_Silent_p.V541V|ARMC4_uc010qdu.1_Silent_p.V233V	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	541	ARM 2.						binding			ovary(4)|skin(2)	6						CAAGTATATTCACCATAATTG	0.418													11	54					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28260126	28260126	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:28260126C>T	uc009xky.2	-	8	1151	c.1053G>A	c.(1051-1053)CTG>CTA	p.L351L	ARMC4_uc010qds.1_Intron|ARMC4_uc010qdt.1_Silent_p.L43L|ARMC4_uc001itz.2_Silent_p.L351L|ARMC4_uc010qdu.1_Silent_p.L43L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	351							binding			ovary(4)|skin(2)	6						GGTTCTTCTCCAGTGACCTTT	0.428													3	58					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28345429	28345429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:28345429C>T	uc001iua.1	-	18	1935	c.1531G>A	c.(1531-1533)GGT>AGT	p.G511S	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.G511S|MPP7_uc009xla.2_Missense_Mutation_p.G511S|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	511	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TTTGCAGCACCTTGGTCATCT	0.259													17	135					0	0	1	0	0
WAC	51322	broad.mit.edu	37	10	28905197	28905197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:28905197C>T	uc001iuf.2	+	12	1737	c.1652C>T	c.(1651-1653)TCC>TTC	p.S551F	WAC_uc001iud.2_Missense_Mutation_p.S506F|WAC_uc001iue.2_Missense_Mutation_p.S241F|WAC_uc001iug.2_Missense_Mutation_p.S448F|WAC_uc001iuh.2_Missense_Mutation_p.S502F	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	551					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						TCTGCCCGATCCACGTGTTCA	0.443													15	107					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318229	30318229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:30318229G>A	uc001iux.2	-	2	907	c.848C>T	c.(847-849)CCA>CTA	p.P283L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P145L|KIAA1462_uc009xle.1_Missense_Mutation_p.P283L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	283	Pro-rich.									ovary(4)	4						CCGGGGAAATGGGGCTGAGCA	0.547													4	60					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318344	30318344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:30318344C>T	uc001iux.2	-	2	792	c.733G>A	c.(733-735)GAA>AAA	p.E245K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E107K|KIAA1462_uc009xle.1_Missense_Mutation_p.E245K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	245										ovary(4)	4						ATGGGAATTTCCGTGCAACTC	0.458													9	154					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318556	30318556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:30318556C>T	uc001iux.2	-	2	580	c.521G>A	c.(520-522)CGA>CAA	p.R174Q	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.R36Q|KIAA1462_uc009xle.1_Missense_Mutation_p.R174Q	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	174										ovary(4)	4						ACCTGACATTCGCAATTCTTC	0.547													25	326					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	30987415	30987415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:30987415C>T	uc010qdx.1	+	4	687	c.145C>T	c.(145-147)CCA>TCA	p.P49S						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		GGGGAAAATTCCAAAGTGCTC	0.343													6	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	30998294	30998294	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:30998294C>T	uc010qdx.1	+	8	1382	c.840C>T	c.(838-840)GCC>GCT	p.A280A						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		ATTTCGCAGCCACGGAGTTCG	0.557													9	65					0	0	1	0	0
EPC1	80314	broad.mit.edu	37	10	32594746	32594746	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:32594746T>C	uc001iwg.1	-	2	537	c.267A>G	c.(265-267)ATA>ATG	p.I89M	EPC1_uc001iwi.3_Missense_Mutation_p.I39M|EPC1_uc009xlt.2_Missense_Mutation_p.I39M|EPC1_uc001iwh.1_Missense_Mutation_p.I89M	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	89					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				CCCCAGGATATATAGACTCAT	0.378													5	64					0	0	1	0	0
CCDC7	221016	broad.mit.edu	37	10	32740822	32740822	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:32740822C>T	uc001iwj.2	+	2	822	c.252C>T	c.(250-252)ATC>ATT	p.I84I	CCDC7_uc009xlu.1_RNA|CCDC7_uc001iwk.2_Silent_p.I84I|CCDC7_uc009xlv.2_RNA|CCDC7_uc009xlw.1_RNA|CCDC7_uc009xlx.1_Silent_p.I84I|CCDC7_uc009xly.1_RNA	NM_145023	NP_659460	Q96M83	CCDC7_HUMAN	coiled-coil domain containing 7	84											0		Breast(68;0.000207)|Prostate(175;0.0107)				ATGAAATGATCGGAAAAATTA	0.289													5	25					0	0	1	0	0
PARD3	56288	broad.mit.edu	37	10	34400132	34400132	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:34400132G>T	uc010qej.1	-	25	4036	c.4036C>A	c.(4036-4038)CAG>AAG	p.Q1346K	PARD3_uc010qek.1_Missense_Mutation_p.Q1343K|PARD3_uc010qel.1_Missense_Mutation_p.Q1309K|PARD3_uc010qem.1_Missense_Mutation_p.Q1330K|PARD3_uc010qen.1_Missense_Mutation_p.Q1300K|PARD3_uc010qeo.1_Missense_Mutation_p.Q1263K|PARD3_uc010qep.1_Missense_Mutation_p.Q1256K|PARD3_uc010qeq.1_Missense_Mutation_p.Q1234K|uc001ixe.1_5'Flank	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1346					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TCAGGAGTCTGAAGTCTGTTC	0.517													6	69					0.00198382	0.00199319	1	1	0
FZD8	8325	broad.mit.edu	37	10	35929515	35929515	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:35929515G>A	uc001iyz.1	-	1	848	c.843C>T	c.(841-843)ATC>ATT	p.I281I		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	281	Helical; Name=1; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						ACCACAGGCCGATCCAGAAGA	0.602													8	60					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430789	37430789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37430789G>A	uc001iza.1	+	7	895	c.796G>A	c.(796-798)GAA>AAA	p.E266K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	322						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGCTTGGTGGAAAAAACACC	0.478													3	36					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430875	37430875	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37430875C>T	uc001iza.1	+	7	981	c.882C>T	c.(880-882)TTC>TTT	p.F294F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	350						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CTGGAAAGTTCGAACAGTCAG	0.443													5	36					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490169	37490169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37490169C>T	uc001iza.1	+	31	2716	c.2617C>T	c.(2617-2619)CGT>TGT	p.R873C		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	929						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACAGAGTCTCCGTGAGACTGT	0.274													7	63					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37507968	37507968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37507968G>A	uc001iza.1	+	34	3259	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1110	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GTTGAAAAAGGAAATTGCCAT	0.289													3	19					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508066	37508066	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37508066G>A	uc001iza.1	+	34	3357	c.3258G>A	c.(3256-3258)AAG>AAA	p.K1086K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1142	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TAAAAGAAAAGAATGCTGAAC	0.353													5	74					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508226	37508226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:37508226G>A	uc001iza.1	+	34	3517	c.3418G>A	c.(3418-3420)GAA>AAA	p.E1140K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1196						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GGCAGAAATTGAATCACACCA	0.393													3	39					0	0	1	0	0
ZNF33B	7582	broad.mit.edu	37	10	43088544	43088544	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:43088544G>A	uc001jaf.1	-	5	1969	c.1854C>T	c.(1852-1854)TTC>TTT	p.F618F	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Silent_p.F506F|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	618	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACTTCTGGCAGAAGGTTTTTC	0.373													5	91					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052357	44052357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:44052357G>A	uc001jaw.3	-	2	1824	c.1171C>T	c.(1171-1173)CGC>TGC	p.R391C	ZNF239_uc001jax.3_Missense_Mutation_p.R391C|ZNF239_uc009xmj.2_Missense_Mutation_p.R391C|ZNF239_uc009xmk.2_Missense_Mutation_p.R391C	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	391	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						AGATGGATGCGAAGATCCGAG	0.522													3	54					0	0	1	0	0
ZNF485	220992	broad.mit.edu	37	10	44112510	44112510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:44112510C>T	uc010qfc.1	+	5	1213	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	ZNF485_uc010qfd.1_Missense_Mutation_p.S249F	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	340	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TATAGCTCATCCTTTGCTGGT	0.428													12	127					0	0	1	0	0
MARCH8	220972	broad.mit.edu	37	10	45953816	45953816	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:45953816A>C	uc001jci.1	-	7	986	c.747T>G	c.(745-747)ATT>ATG	p.I249M	MARCH8_uc001jch.2_Missense_Mutation_p.I531M|MARCH8_uc001jcj.1_Missense_Mutation_p.I249M|MARCH8_uc001jck.1_Missense_Mutation_p.I249M|uc001jcf.2_5'Flank|MARCH8_uc001jcg.1_Missense_Mutation_p.I118M	NM_001002266	NP_001002266	Q5T0T0	MARH8_HUMAN	cellular modulator of immune recognition isoform	249						cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding				0						ATTTTTCAAAAATATTCTTTT	0.368													9	118					0	0	1	0	0
PPYR1	5540	broad.mit.edu	37	10	47087904	47087904	+	Missense_Mutation	SNP	C	T	T	rs143707760		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:47087904C>T	uc001jee.2	+	3	1540	c.1121C>T	c.(1120-1122)CCC>CTC	p.P374L	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.P374L	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	374	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane		p.P374L(1)		ovary(1)|skin(1)	2						AGGTCCAATCCCATTTAACCA	0.587													6	126					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48370683	48370683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:48370683G>A	uc001jex.2	+	2	313	c.151G>A	c.(151-153)GAG>AAG	p.E51K	ZNF488_uc001jey.2_5'UTR	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	51					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTGCTGCTCGAGAAGACGAA	0.677													9	104					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416468	48416468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:48416468G>A	uc001jfa.1	-	1	389	c.226C>T	c.(226-228)CCT>TCT	p.P76S		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	76					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TCCTGCGAAGGGACCCCACTC	0.557													6	90					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48429196	48429196	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:48429196C>T	uc001jfb.2	-	2	1146	c.690G>A	c.(688-690)AGG>AGA	p.R230R	GDF10_uc009xnp.2_Silent_p.R229R|GDF10_uc009xnq.1_Silent_p.R230R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	230					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CCCCCGGGTCCCTCTCCTCAG	0.687													3	24					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49371642	49371642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:49371642C>T	uc001jgi.2	-	28	3717	c.3610G>A	c.(3610-3612)GAT>AAT	p.D1204N	FRMPD2_uc001jgh.2_Missense_Mutation_p.D1172N|FRMPD2_uc001jgj.2_Missense_Mutation_p.D1182N|FRMPD2L1_uc001jgf.2_Missense_Mutation_p.D215N|FRMPD2_uc001jgg.2_Missense_Mutation_p.D156N|FRMPD2_uc001jgk.2_Missense_Mutation_p.D156N	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1204					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TCCTCTTGATCCAGGATGGGG	0.517													6	76					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49371708	49371708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:49371708C>T	uc001jgi.2	-	28	3651	c.3544G>A	c.(3544-3546)GAA>AAA	p.E1182K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E1150K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E1160K|FRMPD2L1_uc001jgf.2_Missense_Mutation_p.E193K|FRMPD2_uc001jgg.2_Missense_Mutation_p.E134K|FRMPD2_uc001jgk.2_Missense_Mutation_p.E134K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1182					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCTGAGAGTTCAGGTGTCTAT	0.448													9	126					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49791161	49791161	+	Missense_Mutation	SNP	C	G	G	rs137922552		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:49791161C>G	uc001jgt.2	-	2	368	c.71G>C	c.(70-72)CGG>CCG	p.R24P	ARHGAP22_uc001jgu.2_Missense_Mutation_p.R24P|ARHGAP22_uc010qgl.1_Missense_Mutation_p.R24P|ARHGAP22_uc010qgm.1_Missense_Mutation_p.R30P|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	24					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						CCCAGGGCTCCGGCTCTGCTC	0.637													24	244					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50118286	50118286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50118286G>A	uc001jhd.2	-	2	862	c.782C>T	c.(781-783)TCC>TTC	p.S261F	WDFY4_uc001jha.3_Intron	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	261						cytoplasm				ovary(1)|pancreas(1)	2						GCTACTCTAGGAAGATGTCAA	0.502													4	92					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50315833	50315833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50315833C>T	uc001jhf.2	-	2	292	c.263G>A	c.(262-264)GGG>GAG	p.G88E	C10orf72_uc001jhh.2_Missense_Mutation_p.G88E	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	88	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GCTGAAATTCCCATAGTACTG	0.627													7	64					0	0	1	0	0
DRGX	644168	broad.mit.edu	37	10	50594875	50594875	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50594875C>T	uc010qgq.1	-	4	279	c.279G>A	c.(277-279)TGG>TGA	p.W93*		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	93					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGTCTTCCTCCATTTGGCCC	0.557													15	193					0	0	1	0	0
CHAT	1103	broad.mit.edu	37	10	50870692	50870692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50870692C>T	uc001jhz.2	+	14	1994	c.1841C>T	c.(1840-1842)GCC>GTC	p.A614V	CHAT_uc001jhv.1_Missense_Mutation_p.A496V|CHAT_uc001jhx.1_Missense_Mutation_p.A496V|CHAT_uc001jhy.1_Missense_Mutation_p.A496V|CHAT_uc001jia.2_Missense_Mutation_p.A496V|CHAT_uc010qgs.1_Missense_Mutation_p.A496V	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	614					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	ACTACACAGGCCATAACAGGG	0.572													13	120					0	0	1	0	0
C10orf53	282966	broad.mit.edu	37	10	50902647	50902647	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50902647G>A	uc001jib.2	+	3	341	c.281G>A	c.(280-282)TGA>TAA	p.*94*	C10orf53_uc001jic.1_3'UTR|C10orf53_uc001jid.1_Intron	NM_001042427	NP_001035892	Q8N6V4	CJ053_HUMAN	chromosome 10 open reading frame 53 isoform b	94											0		all_neural(218;0.107)				AATGCCTACTGATCTCCTCAT	0.512													8	75					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50952707	50952707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:50952707G>A	uc001jie.2	-	13	1863	c.1721C>T	c.(1720-1722)TCC>TTC	p.S574F	OGDHL_uc009xog.2_Missense_Mutation_p.S601F|OGDHL_uc010qgt.1_Missense_Mutation_p.S517F|OGDHL_uc010qgu.1_Missense_Mutation_p.S365F|OGDHL_uc009xoh.2_Missense_Mutation_p.S365F	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	574					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGGCCAGGGGGAGTCCAACCA	0.547													10	99					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52575918	52575918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:52575918G>A	uc001jjj.2	-	9	1177	c.989C>T	c.(988-990)TCT>TTT	p.S330F	A1CF_uc010qhn.1_Missense_Mutation_p.S338F|A1CF_uc001jji.2_Missense_Mutation_p.S330F|A1CF_uc001jjh.2_Missense_Mutation_p.S338F|A1CF_uc010qho.1_Missense_Mutation_p.S338F|A1CF_uc009xov.2_Missense_Mutation_p.S330F	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	330					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TTGGCCCAAAGAGTAGGTATA	0.517													4	39					0	0	1	0	0
PRKG1	5592	broad.mit.edu	37	10	52912969	52912969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:52912969G>A	uc001jjm.2	+	2	506	c.312G>A	c.(310-312)ATG>ATA	p.M104I	PRKG1_uc001jjn.2_Missense_Mutation_p.M119I|PRKG1_uc001jjo.2_Missense_Mutation_p.M119I|PRKG1_uc010qhp.1_Missense_Mutation_p.M104I	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	104	cGMP 1.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		ATGACTTTATGAAGAACTTGG	0.448													6	71					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55571371	55571371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:55571371G>A	uc010qhu.1	-	34	4777	c.4382C>T	c.(4381-4383)CCA>CTA	p.P1461L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAGACTCCATGGATAATTCCT	0.328										HNSCC(58;0.16)			3	24					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61028354	61028354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61028354G>A	uc001jkn.2	-	9	1035	c.901C>T	c.(901-903)CGG>TGG	p.R301W	FAM13C_uc001jko.2_Missense_Mutation_p.R301W|FAM13C_uc010qid.1_Missense_Mutation_p.R218W|FAM13C_uc010qie.1_Missense_Mutation_p.R218W|FAM13C_uc010qif.1_Missense_Mutation_p.R323W|FAM13C_uc001jkp.2_Missense_Mutation_p.R218W	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	301										ovary(2)	2						TCAAATTTCCGAATTTTCCGC	0.507													4	34					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61414213	61414213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61414213G>A	uc010qig.1	-	5	1020	c.571C>T	c.(571-573)CTC>TTC	p.L191F		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	191	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						GAAGATTGGAGGGGTCTCATC	0.403													12	84					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61424021	61424021	+	Missense_Mutation	SNP	C	T	T	rs145829924		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61424021C>T	uc010qig.1	-	4	849	c.400G>A	c.(400-402)GAT>AAT	p.D134N		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	134	Extracellular (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CCTCGGCGATCGTCAAAATAC	0.393													4	65					0	0	1	0	0
CCDC6	8030	broad.mit.edu	37	10	61552739	61552739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61552739G>A	uc001jks.3	-	9	1997	c.1361C>T	c.(1360-1362)CCC>CTC	p.P454L		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	454						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		GGCTGCTGAGGGGACCGTGGG	0.607													12	123					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61815657	61815657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61815657C>T	uc001jky.2	-	42	13016	c.12824G>A	c.(12823-12825)GGA>GAA	p.G4275E	ANK3_uc001jkw.2_Missense_Mutation_p.G899E|ANK3_uc009xpa.2_Missense_Mutation_p.G899E|ANK3_uc001jkx.2_Missense_Mutation_p.G943E|ANK3_uc010qih.1_Missense_Mutation_p.G1766E|ANK3_uc001jkz.3_Missense_Mutation_p.G1759E|ANK3_uc001jkv.2_Missense_Mutation_p.G298E	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4275					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACTCTGTTTTCCTACATCATT	0.388													12	139					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61828496	61828496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61828496G>A	uc001jky.2	-	37	12335	c.12143C>T	c.(12142-12144)TCG>TTG	p.S4048L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4048					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGTTGTAACCGAAGGCTGGCC	0.473													11	105					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61828647	61828647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61828647C>T	uc001jky.2	-	37	12184	c.11992G>A	c.(11992-11994)GAA>AAA	p.E3998K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3998					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTAAAATATTCAATGGAATGT	0.318													5	63					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833267	61833267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61833267C>T	uc001jky.2	-	37	7564	c.7372G>A	c.(7372-7374)GGG>AGG	p.G2458R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2458					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TAAGACTCCCCTCTTAGTTCT	0.413													8	62					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833536	61833536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61833536C>T	uc001jky.2	-	37	7295	c.7103G>A	c.(7102-7104)GGA>GAA	p.G2368E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2368					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTTAATATCTCCCCGGGATAA	0.388													4	80					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61846506	61846506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61846506G>A	uc001jky.2	-	30	3869	c.3677C>T	c.(3676-3678)TCA>TTA	p.S1226L	ANK3_uc001jkw.2_Missense_Mutation_p.S360L|ANK3_uc009xpa.2_Missense_Mutation_p.S360L|ANK3_uc001jkx.2_Missense_Mutation_p.S404L|ANK3_uc010qih.1_Missense_Mutation_p.S1227L|ANK3_uc001jkz.3_Missense_Mutation_p.S1220L|ANK3_uc001jla.1_Missense_Mutation_p.S292L|ANK3_uc001jlb.1_Missense_Mutation_p.S744L	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1226					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACCTTCTCCTGAGGGCGGGGG	0.463													4	77					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61926373	61926373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61926373C>T	uc001jky.2	-	23	2782	c.2590G>A	c.(2590-2592)GAA>AAA	p.E864K	ANK3_uc001jkx.2_Missense_Mutation_p.E42K|ANK3_uc010qih.1_Missense_Mutation_p.E847K|ANK3_uc001jkz.3_Missense_Mutation_p.E858K|ANK3_uc001jlb.1_Intron|ANK3_uc001jlc.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	864					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGATATATTCGCCATCACTG	0.303													9	43					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61994536	61994536	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:61994536G>A	uc001jky.2	-	8	999	c.807C>T	c.(805-807)ATC>ATT	p.I269I	ANK3_uc010qih.1_Silent_p.I252I|ANK3_uc001jkz.3_Silent_p.I263I|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	269	ANK 7.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTAAAGGAGTGATGTCATTCT	0.393													3	37					0	0	1	0	0
TMEM26	219623	broad.mit.edu	37	10	63188777	63188777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:63188777C>T	uc001jlo.2	-	4	881	c.512G>A	c.(511-513)CGA>CAA	p.R171Q	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	171						integral to membrane					0	Prostate(12;0.0112)					GAGTTGATCTCGAGTGATCCC	0.443													4	39					0	0	1	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585916	66585916	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:66585916G>A	uc009xpm.1	+	1		c.632G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						AGATGCCCGGGATTTCTGTGA	0.463													4	17					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	67726433	67726433	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:67726433C>T	uc009xpn.1	-	17	2460	c.2337G>A	c.(2335-2337)CTG>CTA	p.L779L	CTNNA3_uc001jmw.2_Silent_p.L779L	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	779					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGCAGATTTTCAGTTGGTGGG	0.428													4	70					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68139057	68139057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:68139057C>T	uc009xpn.1	-	12	1708	c.1585G>A	c.(1585-1587)GAT>AAT	p.D529N	CTNNA3_uc001jmw.2_Missense_Mutation_p.D529N	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	529					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TTATCAGCATCCTGGTCTCTT	0.458													7	51					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526117	68526117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:68526117G>A	uc009xpn.1	-	9	1309	c.1186C>T	c.(1186-1188)CTT>TTT	p.L396F	CTNNA3_uc001jmw.2_Missense_Mutation_p.L396F|CTNNA3_uc001jmx.3_Missense_Mutation_p.L396F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	396					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGAACCAAAAGAGGGACTGTC	0.403													4	56					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526136	68526136	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:68526136G>A	uc009xpn.1	-	9	1290	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	CTNNA3_uc001jmw.2_Silent_p.F389F|CTNNA3_uc001jmx.3_Silent_p.F389F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	389					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TCGTATCCAGGAAAGAGTCTG	0.388													9	41					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940116	68940116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:68940116G>A	uc009xpn.1	-	7	1129	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	CTNNA3_uc001jmw.2_Missense_Mutation_p.R336C|CTNNA3_uc001jmx.3_Missense_Mutation_p.R336C|CTNNA3_uc009xpo.1_Missense_Mutation_p.R196C|CTNNA3_uc001jna.2_Missense_Mutation_p.R348C	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	336	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity	p.R336C(1)		skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGAGCCTGGCGAATGGCGTTG	0.512													6	48					0	0	1	0	0
STOX1	219736	broad.mit.edu	37	10	70644563	70644563	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:70644563C>T	uc001jos.2	+	3	1098	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Silent_p.F227F	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	337						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						CTGCTCAGTTCCCACCTGAAG	0.423													10	71					0	0	1	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70954960	70954960	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:70954960T>C	uc001jpe.1	+	7	925	c.870T>C	c.(868-870)ATT>ATC	p.I290I	SUPV3L1_uc010qjd.1_Silent_p.I159I	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	290	Helicase ATP-binding.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TGGCTGTAATTGATGAAATTC	0.363													3	38					0	0	1	0	0
COL13A1	1305	broad.mit.edu	37	10	71654450	71654450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:71654450G>A	uc001jpr.1	+	10	1159	c.623G>A	c.(622-624)GGA>GAA	p.G208E	COL13A1_uc001jqj.1_Missense_Mutation_p.G208E|COL13A1_uc001jps.1_Missense_Mutation_p.G179E|COL13A1_uc001jpt.1_Missense_Mutation_p.G208E|COL13A1_uc001jpu.1_Missense_Mutation_p.G208E|COL13A1_uc001jpv.1_Missense_Mutation_p.G208E|COL13A1_uc001jpx.1_Missense_Mutation_p.G208E|COL13A1_uc001jpw.1_Missense_Mutation_p.G196E|COL13A1_uc001jpy.1_Missense_Mutation_p.G187E|COL13A1_uc001jpz.1_Missense_Mutation_p.G170E|COL13A1_uc001jqa.1_Missense_Mutation_p.G170E|COL13A1_uc001jqc.1_Missense_Mutation_p.G208E|COL13A1_uc001jqb.1_Missense_Mutation_p.G179E|COL13A1_uc001jql.2_Missense_Mutation_p.G208E|COL13A1_uc001jqd.1_Missense_Mutation_p.G196E|COL13A1_uc001jqe.1_Missense_Mutation_p.G191E|COL13A1_uc001jqf.1_Missense_Mutation_p.G208E|COL13A1_uc001jqg.1_Missense_Mutation_p.G208E|COL13A1_uc001jqh.1_Missense_Mutation_p.G208E|COL13A1_uc001jqi.1_Missense_Mutation_p.G208E|COL13A1_uc010qjf.1_Missense_Mutation_p.G17E|COL13A1_uc001jqk.1_Missense_Mutation_p.G68E	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	208	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	GGACAAAAAGGAGAAAAGGTA	0.463													7	99					0	0	1	0	0
NPFFR1	64106	broad.mit.edu	37	10	72025966	72025966	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:72025966C>T	uc010qjk.1	-	1	189	c.183G>A	c.(181-183)CTG>CTA	p.L61L		NM_022146	NP_071429	Q9GZQ6	NPFF1_HUMAN	neuropeptide FF receptor 1	63	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide receptor activity				0						TGAAACAGACCAGGGTGTTGC	0.547													3	61					0	0	1	0	0
C10orf54	64115	broad.mit.edu	37	10	73521639	73521639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:73521639G>A	uc001jsd.2	-	2	368	c.227C>T	c.(226-228)TCG>TTG	p.S76L	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_5'UTR|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Missense_Mutation_p.S76L	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	76	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CTCGCCCCTCGAGCTGCGGTA	0.642													7	68					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73537506	73537506	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:73537506T>C	uc001jrx.3	+	37	5292	c.4915T>C	c.(4915-4917)TAT>CAT	p.Y1639H		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1639	Cadherin 16.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GCAGCCCCACTATGAGGTGCT	0.582													3	23					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74695435	74695435	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:74695435G>A	uc001jtf.1	-	4	595	c.528C>T	c.(526-528)CCC>CCT	p.P176P	PLA2G12B_uc009xqt.1_Silent_p.P86P|PLA2G12B_uc010qjz.1_Silent_p.P175P	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	176					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					TATTCATAAAGGGGCGGCAGC	0.502													7	91					0	0	1	0	0
ANXA7	310	broad.mit.edu	37	10	75157026	75157026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:75157026G>A	uc001jtz.2	-	4	339	c.266C>T	c.(265-267)CCA>CTA	p.P89L	ANXA7_uc001jua.2_Missense_Mutation_p.P89L|ANXA7_uc001jub.2_Missense_Mutation_p.P49L|ANXA7_uc010qki.1_Intron|ANXA7_uc009xre.2_Intron|ANXA7_uc009xrf.1_Intron	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	89	Repeat-rich region.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TCCTTGGCCTGGAGGAACTAG	0.418													3	21					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75552346	75552346	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:75552346A>G	uc009xrl.2	+	10	2081	c.2049A>G	c.(2047-2049)ACA>ACG	p.T683T	KIAA0913_uc001jve.2_Silent_p.T683T|KIAA0913_uc001jvf.2_Silent_p.T683T|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Silent_p.T106T|KIAA0913_uc010qkr.1_Silent_p.T106T|KIAA0913_uc001jvj.2_Silent_p.T106T	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	683							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					AGCCTCCCACAGCCTCTGTTG	0.582													4	62					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78669819	78669819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:78669819C>T	uc001jxn.2	-	25	3229	c.3052G>A	c.(3052-3054)GAT>AAT	p.D1018N	KCNMA1_uc001jxj.2_Missense_Mutation_p.D964N|KCNMA1_uc001jxk.1_Missense_Mutation_p.D636N|KCNMA1_uc009xrt.1_Missense_Mutation_p.D809N|KCNMA1_uc001jxl.1_Missense_Mutation_p.D643N|KCNMA1_uc001jxo.2_Missense_Mutation_p.D1001N|KCNMA1_uc001jxm.2_Missense_Mutation_p.D960N|KCNMA1_uc001jxq.2_Missense_Mutation_p.D990N	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1018	Calcium bowl.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TCATCATCATCGTCTTGGTCC	0.478													5	44					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79628925	79628925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:79628925G>A	uc001jzk.2	-	2	405	c.335C>T	c.(334-336)CCC>CTC	p.P112L	DLG5_uc009xru.1_RNA|uc001jzm.1_3'UTR	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	112					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGAGTCTGAGGGCATGGTGGA	0.597													6	97					0	0	1	0	0
PPIF	10105	broad.mit.edu	37	10	81109470	81109470	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:81109470C>T	uc001kai.2	+	3	361	c.276C>T	c.(274-276)GGC>GGT	p.G92G	PPIF_uc001kaj.2_Silent_p.G92G	NM_005729	NP_005720	P30405	PPIF_HUMAN	peptidylprolyl isomerase F precursor	92	PPIase cyclophilin-type.				protein folding	membrane fraction|mitochondrial matrix	peptidyl-prolyl cis-trans isomerase activity			skin(1)	1	all_cancers(46;0.0893)|Breast(12;8.52e-05)|all_epithelial(25;0.00449)|Prostate(51;0.00985)		Epithelial(14;0.00242)|all cancers(16;0.0069)|Colorectal(32;0.229)		Dimethyl sulfoxide(DB01093)|L-Proline(DB00172)	GCTACAAAGGCTCCACCTTCC	0.408													4	60					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702255	81702255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:81702255G>A	uc001kbh.2	-	4	365	c.322C>T	c.(322-324)CCA>TCA	p.P108S	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	108	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GGAGGTCCTGGAGGTCCTGAG	0.572													6	55					0	0	1	0	0
NRG3	10718	broad.mit.edu	37	10	84744883	84744883	+	Missense_Mutation	SNP	G	A	A	rs117241349		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:84744883G>A	uc001kco.2	+	9	1640	c.1613G>A	c.(1612-1614)CGA>CAA	p.R538Q	NRG3_uc010qlz.1_Missense_Mutation_p.R537Q|NRG3_uc001kcp.2_Missense_Mutation_p.R341Q|NRG3_uc001kcq.2_Missense_Mutation_p.R188Q|NRG3_uc001kcr.2_Missense_Mutation_p.R212Q	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	562	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AAAACCCAACGAAATACATCA	0.363													23	155					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984787	85984787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:85984787G>A	uc001kcy.2	-	2	202	c.194C>T	c.(193-195)TCA>TTA	p.S65L	LRIT2_uc010qmc.1_Missense_Mutation_p.S65L	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	65						integral to membrane				ovary(2)	2						AAATAAGGGTGAATTTTCAAT	0.448													8	95					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984833	85984833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:85984833G>A	uc001kcy.2	-	2	156	c.148C>T	c.(148-150)CCT>TCT	p.P50S	LRIT2_uc010qmc.1_Missense_Mutation_p.P50S	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	50	LRRNT.					integral to membrane				ovary(2)	2						AGGTTCCCAGGGATCTTTCCC	0.448													9	101					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87966238	87966238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:87966238C>T	uc001kdl.1	-	3	504	c.403G>A	c.(403-405)GAT>AAT	p.D135N	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	135	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GCCTCACCATCGGGGCTGGGG	0.627										Multiple Myeloma(13;0.14)			10	92					0	0	1	0	0
WAPAL	23063	broad.mit.edu	37	10	88211797	88211797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:88211797G>A	uc001kdo.2	-	15	3483	c.3041C>T	c.(3040-3042)TCC>TTC	p.S1014F	WAPAL_uc009xsv.2_Intron|WAPAL_uc001kdn.2_Missense_Mutation_p.S1051F|WAPAL_uc009xsw.2_Missense_Mutation_p.S1008F	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	1014	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						ACTACAGATGGAAGAATCAAA	0.428													9	99					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88696643	88696643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:88696643C>T	uc001kea.2	-	7	2834	c.2707G>A	c.(2707-2709)GGG>AGG	p.G903R	MMRN2_uc010qmn.1_Missense_Mutation_p.G546R	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	903	C1q.					extracellular space				large_intestine(1)	1						CTTCCACTCCCCTGCCCAGTG	0.557													29	310					0	0	1	0	0
LIPA	3988	broad.mit.edu	37	10	90974677	90974677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:90974677G>A	uc001kga.3	-	10	1276	c.1108C>T	c.(1108-1110)CCG>TCG	p.P370S	LIPA_uc001kgb.3_Missense_Mutation_p.P314S|LIPA_uc001kgc.3_Missense_Mutation_p.P372S|LIPA_uc010qnf.1_Missense_Mutation_p.P175S|LIPA_uc009xtq.2_Missense_Mutation_p.P370S	NM_000235	NP_000226	P38571	LICH_HUMAN	lipase A precursor	370					lipid catabolic process	lysosome	lipase activity|sterol esterase activity				0		Colorectal(252;0.0162)		GBM - Glioblastoma multiforme(2;0.00406)		TCCCATTCCGGAATGCTCTCA	0.463													7	66					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95719891	95719891	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:95719891G>A	uc009xuj.2	-	1	1782	c.1263C>T	c.(1261-1263)GGC>GGT	p.G421G		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TGCCACTGGAGCCTGCTCGCT	0.507													4	48					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95720901	95720901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:95720901G>A	uc009xuj.2	-	1	772	c.253C>T	c.(253-255)CGT>TGT	p.R85C		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GTCTTGAAACGAAAGGCATTG	0.498													10	125					0	0	1	0	0
NOC3L	64318	broad.mit.edu	37	10	96110005	96110005	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96110005G>A	uc001kjq.1	-	9	1081	c.993C>T	c.(991-993)TCC>TCT	p.S331S	NOC3L_uc009xuk.1_Silent_p.S116S	NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	331						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				ATGCCTTTAAGGAAACTACAT	0.378													14	129					0	0	1	0	0
HELLS	3070	broad.mit.edu	37	10	96333775	96333775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96333775C>T	uc001kjt.2	+	8	641	c.536C>T	c.(535-537)TCG>TTG	p.S179L	HELLS_uc001kjs.2_Missense_Mutation_p.S163L|HELLS_uc009xul.2_Missense_Mutation_p.S179L|HELLS_uc009xum.2_Missense_Mutation_p.S179L|HELLS_uc009xun.2_Missense_Mutation_p.S55L|HELLS_uc009xuo.2_Missense_Mutation_p.S179L|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.S41L|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	179					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		AATAAAGATTCGAATAGTATA	0.333													13	113					0	0	1	0	0
HELLS	3070	broad.mit.edu	37	10	96354526	96354526	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96354526C>T	uc001kjt.2	+	19	2268	c.2163C>T	c.(2161-2163)CGC>CGT	p.R721R	HELLS_uc001kjs.2_Silent_p.R705R|HELLS_uc009xul.2_Silent_p.R623R|HELLS_uc009xum.2_Silent_p.R591R|HELLS_uc009xun.2_Silent_p.R597R|HELLS_uc009xuo.2_Silent_p.R767R|HELLS_uc001kju.2_Silent_p.R360R|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Silent_p.R583R|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	721	Helicase C-terminal.				cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		TTGTTTATCGCCTTGTTACAG	0.358													4	48					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540377	96540377	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96540377G>A	uc010qnz.1	+	4	603	c.603G>A	c.(601-603)TTG>TTA	p.L201L	CYP2C19_uc009xus.1_Silent_p.L66L|CYP2C19_uc010qny.1_Silent_p.L179L	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	201					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TGGAAAAATTGAATGAAAACA	0.403													11	75					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96826983	96826983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96826983C>T	uc001kkb.2	-	3	558	c.463G>A	c.(463-465)GAG>AAG	p.E155K	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.E85K|CYP2C8_uc010qob.1_Missense_Mutation_p.E69K|CYP2C8_uc010qoc.1_Missense_Mutation_p.E53K|CYP2C8_uc010qod.1_Missense_Mutation_p.E69K	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	155					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TTTCTCAACTCCTCCACAAGG	0.512													9	148					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	96997851	96997851	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:96997851A>C	uc001kkh.2	-	7	930	c.821T>G	c.(820-822)CTG>CGG	p.L274R	PDLIM1_uc001kki.2_Silent_p.A273A|PDLIM1_uc009xuv.2_3'UTR|PDLIM1_uc001kkj.1_3'UTR	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	274	LIM zinc-binding.				response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		ACGGTCCCGCAGCTTCACAAA	0.547													3	32					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	97023694	97023694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:97023694C>T	uc001kkh.2	-	4	569	c.460G>A	c.(460-462)GAA>AAA	p.E154K	PDLIM1_uc001kki.2_Missense_Mutation_p.E154K|PDLIM1_uc009xuv.2_Missense_Mutation_p.E154K|PDLIM1_uc001kkj.1_Missense_Mutation_p.E154K	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	154					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GAGATATTTTCAGAAGAGTAG	0.557													11	74					0	0	1	0	0
ALDH18A1	5832	broad.mit.edu	37	10	97371042	97371042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:97371042G>A	uc001kkz.2	-	16	2323	c.2081C>T	c.(2080-2082)TCC>TTC	p.S694F	ALDH18A1_uc001kky.2_Missense_Mutation_p.S692F|ALDH18A1_uc010qog.1_Missense_Mutation_p.S583F|ALDH18A1_uc010qoh.1_Missense_Mutation_p.S482F	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	694	Gamma-glutamyl phosphate reductase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	ATCCGTGTGGGAGCTGCCATA	0.522													19	180					0	0	1	0	0
ALDH18A1	5832	broad.mit.edu	37	10	97402889	97402889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:97402889G>A	uc001kkz.2	-	3	405	c.163C>T	c.(163-165)CGT>TGT	p.R55C	ALDH18A1_uc001kky.2_Missense_Mutation_p.R55C|ALDH18A1_uc010qog.1_Intron|ALDH18A1_uc010qoh.1_Intron	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	55	Glutamate 5-kinase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	CCATGTGTACGACTGAGGGGT	0.522													11	155					0	0	1	0	0
ENTPD1	953	broad.mit.edu	37	10	97599471	97599471	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:97599471T>C	uc001klh.3	+	3	492	c.168T>C	c.(166-168)GGT>GGC	p.G56G	ENTPD1_uc001kle.1_Silent_p.G63G|ENTPD1_uc001kli.3_Silent_p.G63G|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Silent_p.G68G|ENTPD1_uc010qok.1_5'UTR|ENTPD1_uc010qol.1_5'UTR|ENTPD1_uc010qom.1_Silent_p.G56G|ENTPD1_uc010qon.1_5'UTR|ENTPD1_uc009xva.2_Intron|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	56	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		TGGATGCGGGTTCTTCTCACA	0.423													7	140					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98188432	98188432	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:98188432C>T	uc001kml.1	-	5	820	c.594G>A	c.(592-594)AGG>AGA	p.R198R	TLL2_uc009xvf.1_Silent_p.R146R	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	198	Metalloprotease (By similarity).				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CCTCATCCGTCCTTTCTATGA	0.498													4	61					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98192651	98192651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:98192651G>A	uc001kml.1	-	4	659	c.433C>T	c.(433-435)CCC>TCC	p.P145S	TLL2_uc009xvf.1_Intron	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	145					cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CGGACCCGGGGAGAGAAGGTC	0.552													4	63					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98408569	98408569	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:98408569C>T	uc001kmq.2	-	7	1160	c.1032G>A	c.(1030-1032)GCG>GCA	p.A344A	PIK3AP1_uc001kmp.2_Silent_p.A166A	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	344						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GTCCATACTTCGCAGCAAAAT	0.512													4	53					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98763836	98763836	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:98763836A>C	uc001kmw.2	-	34	4106	c.3854T>G	c.(3853-3855)CTC>CGC	p.L1285R		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1285	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TCCCACATAGAGTGGCGCCTC	0.587													15	121					0	0	1	0	0
PI4K2A	55361	broad.mit.edu	37	10	99410789	99410789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:99410789C>T	uc001kog.1	+	2	584	c.527C>T	c.(526-528)CCT>CTT	p.P176L	PI4K2A_uc010qoy.1_Missense_Mutation_p.P146L|PI4K2A_uc009xvw.1_5'UTR	NM_018425	NP_060895	Q9BTU6	P4K2A_HUMAN	phosphatidylinositol 4-kinase type 2 alpha	176	PI3K/PI4K.				phosphatidylinositol biosynthetic process	cytoplasm|integral to plasma membrane|membrane raft	1-phosphatidylinositol 4-kinase activity|ATP binding|magnesium ion binding			lung(1)|skin(1)	2		Colorectal(252;0.162)		Epithelial(162;1.24e-10)|all cancers(201;1.2e-08)		CTGTGCTGTCCTTGCTGCTTT	0.512													7	51					0	0	1	0	0
CPN1	1369	broad.mit.edu	37	10	101829544	101829544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:101829544G>A	uc001kql.2	-	3	763	c.503C>T	c.(502-504)ACC>ATC	p.T168I		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	168	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		GTAGATATAGGTATTGAGATC	0.468													13	89					0	0	1	0	0
PAX2	5076	broad.mit.edu	37	10	102566297	102566297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:102566297C>T	uc001krk.3	+	7	1346	c.796C>T	c.(796-798)CGG>TGG	p.R266W	PAX2_uc001krl.3_Missense_Mutation_p.R243W|PAX2_uc001krm.3_Missense_Mutation_p.R266W|PAX2_uc001kro.3_Missense_Mutation_p.R243W|PAX2_uc001krn.3_Missense_Mutation_p.R243W|PAX2_uc010qps.1_Missense_Mutation_p.R242W|PAX2_uc001krp.1_Missense_Mutation_p.R239W	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	266					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		AGCTTTGGATCGGGTCTTTGA	0.542													27	385					0	0	1	0	0
C10orf2	56652	broad.mit.edu	37	10	102748367	102748367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:102748367G>A	uc001ksf.2	+	1	1075	c.400G>A	c.(400-402)GAT>AAT	p.D134N	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.D134N|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	134					cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GGGGCGAGGGGATGGGGCCAG	0.592													23	265					0	0	1	0	0
SUFU	51684	broad.mit.edu	37	10	104269022	104269022	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:104269022C>T	uc001kvy.1	+	2	425	c.279C>T	c.(277-279)TTC>TTT	p.F93F	SUFU_uc001kvw.1_Silent_p.F93F|SUFU_uc001kvx.2_Silent_p.F93F	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	93					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		acatcagcttcggcctgagtg	0.294			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation				16	184					0	0	1	0	0
ARL3	403	broad.mit.edu	37	10	104459131	104459131	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:104459131A>G	uc001kwa.2	-	3	421	c.263T>C	c.(262-264)CTT>CCT	p.L88P		NM_004311	NP_004302	P36405	ARL3_HUMAN	ADP-ribosylation factor-like 3	88					cell cycle|cytokinesis|small GTPase mediated signal transduction	centrosome|cytoplasmic microtubule|Golgi membrane|midbody|nucleus|photoreceptor connecting cilium|spindle microtubule	GDP binding|GTP binding|metal ion binding|microtubule binding				0		Colorectal(252;0.122)		Epithelial(162;4.88e-09)|all cancers(201;1.29e-07)|BRCA - Breast invasive adenocarcinoma(275;0.22)		AGTACTTACAAGAATATCGGT	0.363													3	54					0	0	1	0	0
CYP17A1	1586	broad.mit.edu	37	10	104593873	104593873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:104593873G>A	uc001kwg.2	-	4	845	c.673C>T	c.(673-675)CCC>TCC	p.P225S		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	225					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GTTTTGTTGGGGAAAATCTGG	0.383													4	28					0	0	1	0	0
PDCD11	22984	broad.mit.edu	37	10	105162876	105162876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:105162876C>T	uc001kwy.1	+	4	323	c.236C>T	c.(235-237)TCC>TTC	p.S79F		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	79					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		CTCTTCTAGTCCCTGTGTGAG	0.433													15	179					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105798220	105798220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:105798220C>T	uc001kxr.2	-	45	3183	c.3014G>A	c.(3013-3015)GGC>GAC	p.G1005D		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1005	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GCTGATAGAGCCCGGAGGCCC	0.607													29	184					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105823526	105823526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:105823526C>T	uc001kxr.2	-	11	986	c.817G>A	c.(817-819)GGA>AGA	p.G273R	COL17A1_uc010qqv.1_Missense_Mutation_p.G257R|COL17A1_uc009xxp.1_Missense_Mutation_p.G273R	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	273	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GTGCTGAGTCCAGGGTGCAAA	0.527													4	95					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074666	106074666	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:106074666G>A	uc001kye.2	-	2	1217	c.1144C>T	c.(1144-1146)CTG>TTG	p.L382L	ITPRIP_uc001kyf.2_Silent_p.L382L|ITPRIP_uc001kyg.2_Silent_p.L382L	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	382						plasma membrane					0						GCAAAGGACAGGAGCCAGTCT	0.592													5	66					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106166531	106166531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:106166531G>A	uc001kyh.2	+	15	2370	c.2236G>A	c.(2236-2238)GAA>AAA	p.E746K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	746	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		AGAGGTGGTTGAAAAAGAGCT	0.458													7	83					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106737216	106737216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:106737216G>A	uc001kyi.1	+	4	1146	c.919G>A	c.(919-921)GAG>AAG	p.E307K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	307	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TCCCAAGCAAGAGGACTGGGT	0.453													4	48					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107022096	107022096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:107022096C>T	uc001kyi.1	+	26	3678	c.3451C>T	c.(3451-3453)CCT>TCT	p.P1151S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1151	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TAGGAAAATCCCTTGGATTAA	0.488													6	66					0	0	1	0	0
PDCD4	27250	broad.mit.edu	37	10	112641098	112641098	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:112641098A>G	uc001kzh.2	+	3	394	c.151A>G	c.(151-153)AAC>GAC	p.N51D	PDCD4_uc001kzg.2_Missense_Mutation_p.N40D|PDCD4_uc010qre.1_Missense_Mutation_p.N37D	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	51					apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		ATCCTCCATTAACGAAGCTAG	0.443													12	89					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114168236	114168236	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:114168236T>A	uc001kzs.2	+	6	630	c.489T>A	c.(487-489)TAT>TAA	p.Y163*	ACSL5_uc001kzt.2_Nonsense_Mutation_p.Y163*|ACSL5_uc001kzu.2_Nonsense_Mutation_p.Y219*|ACSL5_uc009xxz.2_Nonsense_Mutation_p.Y163*|ACSL5_uc010qrj.1_5'Flank	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	163	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		TACCTCTGTATGACACCTTGG	0.418													19	134					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114172997	114172997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:114172997G>A	uc001kzs.2	+	12	1156	c.1015G>A	c.(1015-1017)GAC>AAC	p.D339N	ACSL5_uc001kzt.2_Missense_Mutation_p.D339N|ACSL5_uc001kzu.2_Missense_Mutation_p.D395N|ACSL5_uc009xxz.2_Missense_Mutation_p.D339N|ACSL5_uc010qrj.1_Missense_Mutation_p.D121N	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	339	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		GCTGGCTGACGACATGAAGAC	0.478													20	145					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114182125	114182125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:114182125G>A	uc001kzs.2	+	17	1660	c.1519G>A	c.(1519-1521)GAC>AAC	p.D507N	ACSL5_uc001kzt.2_Missense_Mutation_p.D507N|ACSL5_uc001kzu.2_Missense_Mutation_p.D563N|ACSL5_uc009xxz.2_Missense_Mutation_p.D507N|ACSL5_uc010qrj.1_Missense_Mutation_p.D289N	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	507	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		ATACCTGAAGGACCCTGAGAA	0.542													7	76					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115335667	115335667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:115335667C>T	uc001lai.3	+	4	338	c.235C>T	c.(235-237)CCC>TCC	p.P79S	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Silent_p.S67S	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	79	EGF-like 1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		TCCATGCCAGCCCAACCCCTG	0.522													13	312					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116037780	116037780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:116037780C>T	uc001lbl.1	+	7	995	c.674C>T	c.(673-675)TCG>TTG	p.S225L	VWA2_uc001lbk.1_Missense_Mutation_p.S225L|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	225						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		CTCAGCAGCTCGGCCATCTGC	0.647													8	51					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116100456	116100456	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:116100456G>A	uc001lbn.2	-	2	352	c.51C>T	c.(49-51)TTC>TTT	p.F17F	AFAP1L2_uc001lbo.2_Silent_p.F17F|AFAP1L2_uc010qse.1_Silent_p.F17F|AFAP1L2_uc001lbp.2_Silent_p.F17F|AFAP1L2_uc001lbr.1_Silent_p.F17F	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	17					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GAATCTTGAGGAAGTCATCCA	0.537													6	64					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117093864	117093864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:117093864G>A	uc001lcg.2	+	19	3496	c.3110G>A	c.(3109-3111)GGA>GAA	p.G1037E	ATRNL1_uc010qsm.1_Intron|ATRNL1_uc010qsn.1_Intron	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1037	Laminin EGF-like 1.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CTCACCACAGGAAAGCAGTGT	0.373													9	53					0	0	1	0	0
HSPA12A	259217	broad.mit.edu	37	10	118460575	118460575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:118460575G>A	uc001lct.2	-	4	425	c.320C>T	c.(319-321)CCC>CTC	p.P107L	HSPA12A_uc001lcu.2_Missense_Mutation_p.P24L	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	107							ATP binding			ovary(1)	1				all cancers(201;0.0158)		CTTCCTCTCGGGAGTCAGCAA	0.562													10	109					0	0	1	0	0
VAX1	11023	broad.mit.edu	37	10	118891771	118891771	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:118891771A>C	uc001ldb.1	-	4	755	c.510T>G	c.(508-510)AAT>AAG	p.N170K		NM_199131	NP_954582	Q5SQQ9	VAX1_HUMAN	ventral anterior homeobox 1 isoform b	Error:Variant_position_missing_in_Q5SQQ9_after_alignment						nucleus	sequence-specific DNA binding			ovary(2)	2				all cancers(201;0.0108)		GAGACTCATCATTTGCTGGCT	0.473													10	60					0	0	1	0	0
PDZD8	118987	broad.mit.edu	37	10	119044645	119044645	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:119044645G>A	uc001lde.1	-	5	1798	c.1599C>T	c.(1597-1599)CCC>CCT	p.P533P		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	533					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TAGCTCCAAGGGGTTTAATAG	0.413													15	144					0	0	1	0	0
PRLHR	2834	broad.mit.edu	37	10	120354502	120354502	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:120354502G>A	uc001ldp.1	-	2	394	c.255C>T	c.(253-255)ATC>ATT	p.I85I		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	85	Cytoplasmic (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		GCACCCGCGCGATCACCAGCA	0.662													14	134					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123263380	123263380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:123263380C>T	uc010qtk.1	-	11	2010	c.1363G>A	c.(1363-1365)GCA>ACA	p.A455T	FGFR2_uc010qtg.1_Missense_Mutation_p.A343T|FGFR2_uc010qth.1_Missense_Mutation_p.A340T|FGFR2_uc010qti.1_Missense_Mutation_p.A366T|FGFR2_uc010qtj.1_Missense_Mutation_p.A456T|FGFR2_uc010qtl.1_Missense_Mutation_p.A339T|FGFR2_uc010qtm.1_Missense_Mutation_p.A338T|FGFR2_uc001lfl.3_Missense_Mutation_p.A456T|FGFR2_uc001lfm.2_Missense_Mutation_p.A367T|FGFR2_uc001lfg.3_Missense_Mutation_p.A63T	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	455	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GGGGTGTCTGCCGTTGAAGAG	0.522		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				5	56					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123842714	123842714	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:123842714C>T	uc001lfv.2	+	4	1059	c.699C>T	c.(697-699)GGC>GGT	p.G233G	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.G233G|TACC2_uc010qtv.1_Silent_p.G233G	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	233						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTGCAGGTGGCTTTCCCCCTG	0.627													6	36					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970103	123970103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:123970103C>T	uc001lfv.2	+	9	6523	c.6163C>T	c.(6163-6165)CGT>TGT	p.R2055C	TACC2_uc001lfw.2_Missense_Mutation_p.R201C|TACC2_uc009xzx.2_Missense_Mutation_p.R2010C|TACC2_uc010qtv.1_Missense_Mutation_p.R2059C|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.R133C|TACC2_uc001lga.2_Missense_Mutation_p.R133C|TACC2_uc009xzy.2_Missense_Mutation_p.R133C|TACC2_uc001lgb.2_Missense_Mutation_p.R90C|TACC2_uc010qtw.1_Missense_Mutation_p.R150C	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2055						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTTGGAGCCTCGTGCCTCAGA	0.527													10	82					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124094432	124094432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124094432G>A	uc001lgc.1	+	14	1452	c.1201G>A	c.(1201-1203)GGA>AGA	p.G401R	BTBD16_uc001lgd.1_Missense_Mutation_p.G400R	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	401										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				TGCTCTATATGGATTCTTCTT	0.338													17	141					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124273720	124273720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124273720G>A	uc001lgj.2	+	9	1416	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	430	PDZ.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TGGTCTCAAGGAAAACGACGT	0.488													20	356					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124329689	124329689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124329689C>T	uc001lgk.1	+	3	209	c.103C>T	c.(103-105)CCC>TCC	p.P35S	DMBT1_uc001lgl.1_Missense_Mutation_p.P35S|DMBT1_uc001lgm.1_Missense_Mutation_p.P35S|DMBT1_uc009xzz.1_Missense_Mutation_p.P35S|DMBT1_uc010qtx.1_Missense_Mutation_p.P35S|DMBT1_uc009yaa.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	35					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TTCACTGATTCCCTCGGAGGT	0.547													15	148					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124339312	124339312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124339312G>A	uc001lgk.1	+	10	1004	c.898G>A	c.(898-900)GAT>AAT	p.D300N	DMBT1_uc001lgl.1_Missense_Mutation_p.D300N|DMBT1_uc001lgm.1_Missense_Mutation_p.D300N|DMBT1_uc009xzz.1_Missense_Mutation_p.D300N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.D152N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	300	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGTCCTGGATGATGTGCGCTG	0.597													20	152					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124358371	124358371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124358371C>T	uc001lgk.1	+	26	3144	c.3038C>T	c.(3037-3039)TCC>TTC	p.S1013F	DMBT1_uc001lgl.1_Missense_Mutation_p.S1003F|DMBT1_uc001lgm.1_Missense_Mutation_p.S514F|DMBT1_uc009xzz.1_Missense_Mutation_p.S1013F|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1013	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TACCAAGGCTCCTGGGGCACC	0.587													49	522					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124361486	124361486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124361486G>A	uc001lgk.1	+	29	3623	c.3517G>A	c.(3517-3519)GGA>AGA	p.G1173R	DMBT1_uc001lgl.1_Missense_Mutation_p.G1163R|DMBT1_uc001lgm.1_Missense_Mutation_p.G674R|DMBT1_uc009xzz.1_Missense_Mutation_p.G1173R|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1173	SRCR 9.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTCAGCCCCAGGAAATGCCCG	0.602													25	362					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124402648	124402648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:124402648G>A	uc001lgk.1	+	53	7082	c.6976G>A	c.(6976-6978)GAT>AAT	p.D2326N	DMBT1_uc001lgl.1_Missense_Mutation_p.D2316N|DMBT1_uc001lgm.1_Missense_Mutation_p.D1698N|DMBT1_uc009xzz.1_Missense_Mutation_p.D2325N|DMBT1_uc010qtx.1_Missense_Mutation_p.D1046N|DMBT1_uc009yab.1_Missense_Mutation_p.D1029N|DMBT1_uc009yac.1_Missense_Mutation_p.D620N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2326	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATGCGTGAGGGATGACACCTA	0.577													7	123					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125528070	125528070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:125528070G>A	uc001lhk.1	-	9	1596	c.1271C>T	c.(1270-1272)CCC>CTC	p.P424L	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	424					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GTAGCCATCGGGGTTGAGGGA	0.627													9	108					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129903788	129903788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:129903788G>A	uc001lke.2	-	13	6511	c.6316C>T	c.(6316-6318)CCA>TCA	p.P2106S	MKI67_uc001lkf.2_Missense_Mutation_p.P1746S|MKI67_uc009yav.1_Missense_Mutation_p.P1681S|MKI67_uc009yaw.1_Missense_Mutation_p.P1256S	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2106	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TCTGGTGGTGGAGATTTGCAG	0.493													33	352					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129904176	129904176	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:129904176G>A	uc001lke.2	-	13	6123	c.5928C>T	c.(5926-5928)ATC>ATT	p.I1976I	MKI67_uc001lkf.2_Silent_p.I1616I|MKI67_uc009yav.1_Silent_p.I1551I|MKI67_uc009yaw.1_Silent_p.I1126I	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1976	16 X 122 AA approximate repeats.|9.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ATACTTCTGTGATTTTGTCAT	0.473													12	204					0	0	1	0	0
MGMT	4255	broad.mit.edu	37	10	131334539	131334539	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:131334539A>G	uc001lkh.2	+	2	142	c.116A>G	c.(115-117)AAA>AGA	p.K39R		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	8										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		TGTGAAATGAAACGCACCACA	0.453								Direct_reversal_of_damage					8	115					0	0	1	0	0
MGMT	4255	broad.mit.edu	37	10	131506165	131506165	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:131506165G>A	uc001lkh.2	+	3	251	c.225G>A	c.(223-225)GTG>GTA	p.V75V		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	44										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		GCAGTGCCGTGGAGGTCCCAG	0.587								Direct_reversal_of_damage					9	62					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131640552	131640552	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:131640552G>A	uc001lki.1	-	13	1232	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	400					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GCTTCAAGATGATCTCCTGCA	0.672													9	101					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131671776	131671776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:131671776C>T	uc001lki.1	-	8	780	c.721G>A	c.(721-723)GGG>AGG	p.G241R		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	241					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GCCCGCCTCCCGTGTTTGGAA	0.507													6	69					0	0	1	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133930886	133930886	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:133930886C>T	uc001lkx.3	+	2	441	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGAAGGGGTTCGAGGTGGAGA	0.627													10	110					0	0	1	0	0
SYCE1	93426	broad.mit.edu	37	10	135368926	135368926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:135368926C>T	uc001lno.2	-	12	952	c.847G>A	c.(847-849)GAA>AAA	p.E283K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.E155K|SYCE1_uc009ybn.2_Missense_Mutation_p.E283K|SYCE1_uc001lnn.2_Missense_Mutation_p.E247K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	283	Gln-rich.|Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CCATGCTTTTCCAGCTCTTCC	0.398													5	83					0	0	1	0	0
FRG2B	441581	broad.mit.edu	37	10	135440236	135440236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:135440236C>T	uc010qvg.1	-	1	64	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	4						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GTCTTCATTTCCCTTTCCCAT	0.522													7	285					0	0	1	0	0
RIC8A	60626	broad.mit.edu	37	11	209481	209481	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:209481T>A	uc001log.2	+	3	532	c.207T>A	c.(205-207)AGT>AGA	p.S69R	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Missense_Mutation_p.S69R|RIC8A_uc001loh.2_Missense_Mutation_p.S62R	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	69						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGCTGCAGAGTGTCCGAATCC	0.642													10	154					0	0	1	0	0
IFITM5	387733	broad.mit.edu	37	11	298561	298561	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:298561C>T	uc001low.1	-	2	375	c.339G>A	c.(337-339)CGG>CGA	p.R113R		NM_001025295	NP_001020466	A6NNB3	IFM5_HUMAN	interferon induced transmembrane protein 5	113	Extracellular (Potential).				multicellular organismal development|regulation of bone mineralization|response to biotic stimulus	integral to membrane|plasma membrane					0		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		CCTTGGCCAGCCGGGCCAGGT	0.632													3	36					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1092139	1092139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1092139G>A	uc001lsx.1	+	30	3985	c.3958G>A	c.(3958-3960)GAC>AAC	p.D1320N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1320						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	TGGCAGCGACGACGGTGACCG	0.592													3	39					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1268923	1268923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1268923G>A	uc009ycr.1	+	50	12523	c.12397G>A	c.(12397-12399)GGA>AGA	p.G4133R	MUC5B_uc001ltb.2_Missense_Mutation_p.G3608R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3605	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 6.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCGTGCGGCCGGAGGGGCAGT	0.682													8	73					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1271053	1271053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1271053G>A	uc009ycr.1	+	51	14488	c.14362G>A	c.(14362-14364)GCC>ACC	p.A4788T	MUC5B_uc001ltb.2_Missense_Mutation_p.A4318T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4315	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GACAAGCACAGCCACCAAATC	0.622													35	255					0	0	1	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629518	1629518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1629518G>A	uc001ltw.1	-	1	176	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	33						keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		ACAGCAGCCGGAGCCACAGCC	0.677													33	223					0	0	1	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651402	1651402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1651402C>T	uc001lty.2	+	1	370	c.332C>T	c.(331-333)TCC>TTC	p.S111F		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	111	8 X 4 AA repeats of C-C-X-P.			Missing (in Ref. 1; BAD20201 and 2; CAF31639).		keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCTGTGGCTCCTGTGGGGGG	0.697													10	141					0	0	1	0	0
CTSD	1509	broad.mit.edu	37	11	1775299	1775299	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1775299G>A	uc001luc.1	-	7	1030	c.897C>T	c.(895-897)TCC>TCT	p.S299S	CTSD_uc009yda.1_RNA	NM_001909	NP_001900	P07339	CATD_HUMAN	cathepsin D preproprotein	299					cell death|proteolysis	extracellular space|lysosome|melanosome	aspartic-type endopeptidase activity				0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCACCATGAGGGAAGTGCCTG	0.642													3	41					0	0	1	0	0
TNNI2	7136	broad.mit.edu	37	11	1862075	1862075	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:1862075G>A	uc010qxe.1	+	4	235	c.213G>A	c.(211-213)AAG>AAA	p.K71K	TNNI2_uc010qxc.1_Silent_p.K69K|TNNI2_uc010qxd.1_Silent_p.K69K	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	71					muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGCACGCCAAGATCGATGCGG	0.562													5	65					0	0	1	0	0
IGF2	3481	broad.mit.edu	37	11	2156695	2156695	+	Missense_Mutation	SNP	G	A	A	rs142012621		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:2156695G>A	uc009yde.2	-	2	162	c.59C>T	c.(58-60)TCG>TTG	p.S20L	IGF2_uc001lvf.2_5'Flank|IGF2_uc001lvg.2_Missense_Mutation_p.S20L|IGF2_uc009ydf.2_Missense_Mutation_p.S76L|IGF2_uc001lvh.2_Missense_Mutation_p.S20L|INS-IGF2_uc001lvi.2_RNA|MIR483_hsa-mir-483|MI0002467_5'Flank|INS-IGF2_uc001lvj.1_RNA	NM_001007139	NP_001007140	P01344	IGF2_HUMAN	insulin-like growth factor 2 isoform 1	20					glucose metabolic process|ossification|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|positive regulation of activated T cell proliferation|positive regulation of cell division|positive regulation of glycogen (starch) synthase activity|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|skeletal system development	extracellular space	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|protein serine/threonine kinase activator activity|receptor activator activity			central_nervous_system(1)	1		all_epithelial(84;5.04e-06)|Breast(177;0.000777)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.0179)|COAD - Colon adenocarcinoma(6;0.029)	BRCA - Breast invasive adenocarcinoma(625;1.09e-05)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		AATGCAGCACGAGGCGAAGGC	0.632													5	73					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2432591	2432591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:2432591C>T	uc001lwm.3	-	18	2782	c.2773G>A	c.(2773-2775)GAG>AAG	p.E925K	TRPM5_uc010qxl.1_Missense_Mutation_p.E925K|TRPM5_uc009ydn.2_Missense_Mutation_p.E927K	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	925	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCATCAATCTCGTCCAGTGGG	0.642													4	18					0	0	1	0	0
ART1	417	broad.mit.edu	37	11	3681549	3681549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:3681549G>A	uc001lye.1	+	3	901	c.800G>A	c.(799-801)CGA>CAA	p.R267Q	ART1_uc009yeb.1_Missense_Mutation_p.R267Q	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	267					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	ATCTACCTCCGAGCCCTGGGC	0.607													15	124					0	0	1	0	0
OR52K1	390036	broad.mit.edu	37	11	4510548	4510548	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4510548G>T	uc001lza.1	+	1	418	c.418G>T	c.(418-420)GGG>TGG	p.G140W		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	140	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		GGTCCTGACTGGGTCCCTCAT	0.582													3	49					0.00024832	0.000249679	1	1	0
OR52K1	390036	broad.mit.edu	37	11	4510979	4510979	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4510979C>T	uc001lza.1	+	1	849	c.849C>T	c.(847-849)CTC>CTT	p.L283L		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TTTTCTATCTCCTTTTCCCAC	0.478													15	173					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566516	4566516	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4566516C>T	uc010qyf.1	+	1	96	c.96C>T	c.(94-96)CCC>CCT	p.P32P		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTCCATCCCCTTTGGCTCCA	0.542													7	56					0	0	1	0	0
OR52I2	143502	broad.mit.edu	37	11	4608904	4608904	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4608904T>A	uc010qyh.1	+	1	862	c.862T>A	c.(862-864)TCC>ACC	p.S288T		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	288	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGGATGGCATCCATCTATGC	0.512													7	117					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790321	4790321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4790321G>A	uc010qyl.1	-	1	827	c.827C>T	c.(826-828)TCA>TTA	p.S276L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	276						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGCCATCACTGAATGGACTAC	0.498													9	92					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4869526	4869526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4869526C>T	uc010qyo.1	-	1	913	c.913G>A	c.(913-915)GAG>AAG	p.E305K		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTCTAATCTCCTTCATCTTG	0.468													6	70					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967600	4967600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4967600G>A	uc010qys.1	-	1	731	c.731C>T	c.(730-732)TCA>TTA	p.S244L		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGATGTGTGAAACACAAGT	0.473													7	59					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976132	4976132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:4976132G>A	uc010qyt.1	-	1	812	c.812C>T	c.(811-813)CCC>CTC	p.P271L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATTAATGAGGGGAGAGACATG	0.443													15	99					0	0	1	0	0
OR52A4	390053	broad.mit.edu	37	11	5142041	5142041	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5142041G>A	uc001lzz.1	-	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		CAAGGAGATAGAATTGGAAGA	0.348													7	50					0	0	1	0	0
OR52A4	390053	broad.mit.edu	37	11	5142226	5142226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5142226C>T	uc001lzz.1	-	1	583	c.583G>A	c.(583-585)GAA>AAA	p.E195K		NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TAAACATCTTCAGTGGCAAGC	0.393													8	54					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5172912	5172912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5172912G>A	uc010qyy.1	-	1	688	c.688C>T	c.(688-690)CGT>TGT	p.R230C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGCAAACGAAAAACTGTG	0.423													7	99					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221123	5221124	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5221123_5221124CC>TT	uc010qyz.1	-	1	807_808	c.807_808GG>AA	c.(805-810)ATGGTG>ATAATG	p.269_270MV>IM		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	269_270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAACGGTGCACCATTGTGAGGC	0.475													6	32					0	0	1	0	0
OR51M1	390059	broad.mit.edu	37	11	5411211	5411211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5411211G>A	uc010qzc.1	+	1	583	c.583G>A	c.(583-585)GAA>AAA	p.E195K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	195						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTGCACCAGGAAGTGATACA	0.517													13	117					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443930	5443930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5443930G>A	uc010qzd.1	+	1	500	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTACTCAAGCGACTGCCTTTC	0.517													17	232					0	0	1	0	0
OR51I1	390063	broad.mit.edu	37	11	5461933	5461933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5461933G>A	uc010qze.1	-	1	812	c.812C>T	c.(811-813)CCA>CTA	p.P271L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AACAACAGGTGGAGCACTTTT	0.478													7	70					0	0	1	0	0
OR51I1	390063	broad.mit.edu	37	11	5462101	5462101	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5462101A>G	uc010qze.1	-	1	644	c.644T>C	c.(643-645)TTC>TCC	p.F215S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGCAGGATGAAAGTTGAGTC	0.458													3	11					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510223	5510223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5510223C>T	uc010qzg.1	+	1	287	c.287C>T	c.(286-288)TCC>TTC	p.S96F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGAGATTTCCTTTGGTGGA	0.498													3	38					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566459	5566459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5566459C>T	uc010qzh.1	-	1	295	c.295G>A	c.(295-297)GAA>AAA	p.E99K	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATGTGATTTCGCGAGCCCCT	0.468													9	67					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5798961	5798961	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5798961A>G	uc010qzn.1	-	1	904	c.904T>C	c.(904-906)TAT>CAT	p.Y302H	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	302	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		TTTACTCCATAAACAATAGGG	0.423													4	42					0	0	1	0	0
OR52E6	390078	broad.mit.edu	37	11	5863071	5863071	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5863071G>A	uc010qzq.1	-	1	57	c.57C>T	c.(55-57)ATC>ATT	p.I19I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTAGCCCTGGGATACCCAGCA	0.418													7	67					0	0	1	0	0
OR56A5	390084	broad.mit.edu	37	11	5989424	5989424	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5989424A>T	uc010qzu.1	-	1	301	c.301T>A	c.(301-303)TTC>ATC	p.F101I		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	101	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ACCTGAAGGAAGCAGGCAGGG	0.527													4	56					0	0	1	0	0
OR56A5	390084	broad.mit.edu	37	11	5989583	5989583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:5989583G>A	uc010qzu.1	-	1	142	c.142C>T	c.(142-144)CTT>TTT	p.L48F		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	48	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GTGATCAGAAGGGTGGCATTG	0.577													4	47					0	0	1	0	0
OR56A1	120796	broad.mit.edu	37	11	6048686	6048686	+	Silent	SNP	G	A	A	rs147711206		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6048686G>A	uc010qzw.1	-	1	249	c.249C>T	c.(247-249)ACC>ACT	p.T83T		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGATGACGGTGAGGCAGA	0.577													6	41					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6190599	6190599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6190599G>A	uc010qzy.1	-	1	958	c.958C>T	c.(958-960)CCT>TCT	p.P320S		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCCCAGAGGGGAGGTACAG	0.443													4	62					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6191299	6191299	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6191299G>A	uc010qzy.1	-	1	258	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGCCAAAAGATGGCTAGGG	0.493													11	112					0	0	1	0	0
C11orf42	160298	broad.mit.edu	37	11	6231359	6231359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6231359G>A	uc001mcj.2	+	2	400	c.352G>A	c.(352-354)GGA>AGA	p.G118R		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	118										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATGTTGGATGGACAGCCCTG	0.582													8	116					0	0	1	0	0
FAM160A2	84067	broad.mit.edu	37	11	6245703	6245703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6245703G>A	uc001mcl.3	-	2	403	c.44C>T	c.(43-45)CCT>CTT	p.P15L	FAM160A2_uc001mck.3_Missense_Mutation_p.P15L|FAM160A2_uc001mcm.2_Missense_Mutation_p.P15L	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	15					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						ACGGTGCCCAGGGCCCCGGGA	0.597													9	77					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867198	6867198	+	Silent	SNP	C	T	T	rs139785865	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6867198C>T	uc001met.1	+	1	285	c.285C>T	c.(283-285)TTC>TTT	p.F95F		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCATCTCCTTCCTTGGCTGTG	0.498													3	52					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891546	6891546	+	Silent	SNP	C	T	T	rs144699545		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6891546C>T	uc001meu.1	+	1	561	c.561C>T	c.(559-561)ATC>ATT	p.I187I		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	187	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCTACGCCATCGTCGGAACCA	0.517													12	126					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891746	6891746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6891746C>T	uc001meu.1	+	1	761	c.761C>T	c.(760-762)TCA>TTA	p.S254L		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	254	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAAATAATTCACCTGAGGGC	0.413													16	205					0	0	1	0	0
OR10A4	283297	broad.mit.edu	37	11	6898467	6898467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6898467G>A	uc010rat.1	+	1	589	c.589G>A	c.(589-591)GAA>AAA	p.E197K		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTCTGTGTTTGAACTGGAGGC	0.498													6	71					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913419	6913419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6913419G>A	uc010rau.1	-	1	313	c.313C>T	c.(313-315)CTC>TTC	p.L105F		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCAAAAATGAGGAAAAAGAGA	0.473													4	58					0	0	1	0	0
OR2D3	120775	broad.mit.edu	37	11	6942668	6942668	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6942668C>T	uc010rav.1	+	1	436	c.436C>T	c.(436-438)CTG>TTG	p.L146L		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	146	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTGCAAGCCCCTGTACTACTC	0.512													13	135					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6953791	6953791	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:6953791C>T	uc001mey.2	+	3	876	c.288C>T	c.(286-288)TTC>TTT	p.F96F	ZNF215_uc010raw.1_Silent_p.F96F|ZNF215_uc010rax.1_5'UTR|ZNF215_uc001mez.1_Silent_p.F96F	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	96	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TGGAACAATTCCTGGCAATCC	0.438													5	67					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7022237	7022237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7022237C>T	uc001mfa.2	-	3	980	c.677G>A	c.(676-678)GGA>GAA	p.G226E	ZNF214_uc010ray.1_Missense_Mutation_p.G226E|ZNF214_uc009yfh.1_Missense_Mutation_p.G226E	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		ATAATAAATTCCTTTACATTT	0.408													5	60					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7092468	7092468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7092468C>T	uc001mfb.1	+	12	3534	c.3211C>T	c.(3211-3213)CCA>TCA	p.P1071S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	1071					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AGTTAGCAATCCACACTTAAT	0.403													11	65					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7324273	7324273	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7324273T>A	uc001mfe.2	+	2	386	c.149T>A	c.(148-150)ATC>AAC	p.I50N	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	50	Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		TTTGCAGATATCTCAGTGAGC	0.542													5	105					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7324301	7324301	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7324301C>T	uc001mfe.2	+	2	414	c.177C>T	c.(175-177)GTC>GTT	p.V59V	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	59	Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CCCTTGTGGTCACTGCCTGTG	0.552													9	113					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7324390	7324390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7324390C>T	uc001mfe.2	+	2	503	c.266C>T	c.(265-267)TCT>TTT	p.S89F	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	89	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GGCCTGCCCTCTGGTAGCAAA	0.557													4	91					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7949864	7949864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7949864C>T	uc010rbh.1	-	1	346	c.346G>A	c.(346-348)GGA>AGA	p.G116R		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCCATTGCTCCCAGAAGAAAA	0.368													7	74					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7984965	7984965	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:7984965C>T	uc001mfv.1	-	1	95	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	26	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ACTTTAACTTCTTGAAATCGT	0.572													9	100					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9051441	9051441	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:9051441G>A	uc001mhh.1	-	18	2486	c.2406C>T	c.(2404-2406)ACC>ACT	p.T802T	SCUBE2_uc001mhi.1_Silent_p.T774T|SCUBE2_uc001mhj.1_Silent_p.T676T	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	802						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TTTTACACTGGGTTATGTTTG	0.483													14	191					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9090993	9090993	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:9090993C>T	uc001mhh.1	-	5	647	c.567G>A	c.(565-567)AAG>AAA	p.K189K	SCUBE2_uc001mhi.1_Silent_p.K189K|SCUBE2_uc001mhj.1_Silent_p.K189K	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	189	EGF-like 4 (Potential).					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TTGGGGCCTCCTTGCAGATGT	0.557													13	142					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11354310	11354311	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:11354310_11354311GG>AA	uc001mjo.2	-	8	1767_1768	c.1346_1347CC>TT	c.(1345-1347)ACC>ATT	p.T449I		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	449	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		ACCACCGGAAGGTCTTGCACTG	0.545													10	84					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11400800	11400800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:11400800C>T	uc001mjo.2	-	4	1028	c.607G>A	c.(607-609)GAG>AAG	p.E203K		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	203	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		GTCAGCTTCTCCTTCAGTTCC	0.542													8	64					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12231071	12231071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:12231071C>T	uc001mjz.2	+	6	905	c.617C>T	c.(616-618)CCT>CTT	p.P206L	MICAL2_uc010rch.1_Missense_Mutation_p.P206L|MICAL2_uc001mka.2_Missense_Mutation_p.P206L|MICAL2_uc010rci.1_Missense_Mutation_p.P206L|MICAL2_uc001mkb.2_Missense_Mutation_p.P206L|MICAL2_uc001mkc.2_Missense_Mutation_p.P206L|MICAL2_uc001mkd.2_Missense_Mutation_p.P35L	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	206						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GAATTTCTCCCTACAGACCAT	0.517													15	173					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12341302	12341302	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:12341302A>G	uc001mkg.1	+	4	1777	c.1486A>G	c.(1486-1488)ACC>GCC	p.T496A		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	496	Poly-Ser.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		TGCCTCTTCAACCTCCTCCTC	0.493													10	98					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16810706	16810706	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:16810706C>T	uc001mmo.2	-	23	3309	c.3294G>A	c.(3292-3294)GGG>GGA	p.G1098G	PLEKHA7_uc010rcu.1_Silent_p.G1099G|PLEKHA7_uc001mmm.2_Silent_p.G201G|PLEKHA7_uc010rcv.1_Silent_p.G673G|PLEKHA7_uc001mmn.2_Silent_p.G807G	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	1098					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						CCGTCCTCTCCCCTTGGCCCA	0.647													8	58					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17518322	17518322	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:17518322C>T	uc001mnf.2	-	20	1738	c.1629G>A	c.(1627-1629)AAG>AAA	p.K543K	USH1C_uc001mne.2_Silent_p.K843K|USH1C_uc009yhb.2_Silent_p.K524K|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Silent_p.K507K	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	543					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CGTCATACTCCTTTGGGGGGC	0.582													7	100					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17542924	17542924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:17542924C>T	uc001mnf.2	-	13	1163	c.1054G>A	c.(1054-1056)GAA>AAA	p.E352K	USH1C_uc001mne.2_Missense_Mutation_p.E352K|USH1C_uc009yhb.2_Missense_Mutation_p.E333K|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.E316K	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	352	Potential.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CTCTCATTTTCCTCTGCTGCC	0.493													14	218					0	0	1	0	0
CSRP3	8048	broad.mit.edu	37	11	19209744	19209744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:19209744C>T	uc001mpk.2	-	3	337	c.220G>A	c.(220-222)GGA>AGA	p.G74R		NM_003476	NP_003467	P50461	CSRP3_HUMAN	cysteine and glycine-rich protein 3	74	Gly-rich.				cell differentiation|skeletal muscle tissue development	cytoskeleton|nucleus	protein binding|zinc ion binding				0						GCGCCTTGTCCATACCCGATC	0.582													12	149					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20180804	20180804	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:20180804G>A	uc001mpw.1	-	2	402	c.402C>T	c.(400-402)CCC>CCT	p.P134P		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	134					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGAAGGTCTTGGGAGGGACGC	0.542													8	118					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20625867	20625867	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:20625867G>A	uc001mqd.2	+	3	849	c.576G>A	c.(574-576)GGG>GGA	p.G192G	SLC6A5_uc009yic.2_Intron	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	192	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGGCCCGAGGGAACTGGTCCA	0.597													17	197					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676352	20676352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:20676352G>A	uc001mqd.2	+	16	2605	c.2332G>A	c.(2332-2334)GGA>AGA	p.G778R	SLC6A5_uc009yic.2_Missense_Mutation_p.G543R	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	778	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CGACCCCTTGGGAACCTCTTC	0.547													7	171					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22284557	22284557	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:22284557G>A	uc001mqi.2	+	17	2183	c.1866G>A	c.(1864-1866)CAG>CAA	p.Q622Q	ANO5_uc001mqj.2_Silent_p.Q621Q	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	622	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CCGGGAAACAGATTTTTGGAA	0.358													4	58					0	0	1	0	0
SLC17A6	57084	broad.mit.edu	37	11	22382474	22382474	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:22382474G>A	uc001mqk.2	+	5	1018	c.605G>A	c.(604-606)TGG>TAG	p.W202*		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	202	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CATGGGATATGGAGCAAATGG	0.478													5	63					0	0	1	0	0
SLC17A6	57084	broad.mit.edu	37	11	22398151	22398151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:22398151C>T	uc001mqk.2	+	11	1759	c.1346C>T	c.(1345-1347)TCG>TTG	p.S449L		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	449	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						ATGGGCATTTCGAATGGTGTT	0.383													11	78					0	0	1	0	0
GAS2	2620	broad.mit.edu	37	11	22747966	22747966	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:22747966A>G	uc009yie.2	+	4	702	c.396A>G	c.(394-396)GAA>GAG	p.E132E	GAS2_uc001mqm.2_Silent_p.E132E|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Silent_p.E132E	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	132	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						GTCTATTTGAATCGGAAGGTT	0.378													5	61					0	0	1	0	0
SLC5A12	159963	broad.mit.edu	37	11	26734223	26734223	+	Missense_Mutation	SNP	G	A	A	rs145373937		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:26734223G>A	uc001mra.2	-	2	683	c.370C>T	c.(370-372)CGC>TGC	p.R124C	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.R124C	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	124	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity	p.R124C(1)		ovary(1)|skin(1)	2						GCAGCATAGCGAACTGGTTTG	0.398													24	237					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016436	27016436	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:27016436G>A	uc001mrd.2	+	1	809	c.363G>A	c.(361-363)CGG>CGA	p.R121R		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	121						extracellular region|Golgi apparatus					0						ACCTGCGGCGGGAGTCCCACC	0.617													8	96					0	0	1	0	0
MPPED2	744	broad.mit.edu	37	11	30601897	30601897	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:30601897T>G	uc001msr.2	-	1	144	c.24A>C	c.(22-24)CAA>CAC	p.Q8H	MPPED2_uc001msq.3_Missense_Mutation_p.Q8H|MPPED2_uc009yji.2_5'UTR	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	8					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						TAACTTTGCCTTGAGAAGGAA	0.493													11	100					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30926546	30926546	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:30926546G>A	uc001mss.1	-	9		c.1373C>T			uc009yjk.1_Missense_Mutation_p.R872C|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		TTCCCATTACGATACCCATCC	0.458													8	69					0	0	1	0	0
RCN1	5954	broad.mit.edu	37	11	32124957	32124957	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:32124957C>T	uc010reb.1	+	5	1085	c.819C>T	c.(817-819)ATC>ATT	p.I273I	RCN1_uc010rea.1_Silent_p.I222I|RCN1_uc001mtk.2_Silent_p.I107I	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	273	EF-hand 5.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					GCCACTGGATCCTCCCTCAAG	0.458													6	87					0	0	1	0	0
WT1	7490	broad.mit.edu	37	11	32414251	32414251	+	Missense_Mutation	SNP	G	A	A	rs121907910		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:32414251G>A	uc001mtn.1	-	8	1496	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	WT1_uc001mtl.1_Missense_Mutation_p.R222C|WT1_uc001mtm.1_Missense_Mutation_p.R205C|WT1_uc001mto.1_Missense_Mutation_p.R434C|WT1_uc001mtp.1_Missense_Mutation_p.R417C|WT1_uc001mtq.1_Missense_Mutation_p.R417C|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	366	C2H2-type 2.		R -> H (in DDS and WT1).|R -> C (in WT1, DDS and MEACHS).|R -> L (in DDS).	R->A: Strongly reduced binding of DNA and RNA.	adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding	p.R366C(1)	EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			TGGTCTGAACGAGAAAACCTT	0.443			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				5	73					0	0	1	0	0
FBXO3	26273	broad.mit.edu	37	11	33768802	33768802	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:33768802T>C	uc001muz.2	-	10	1141	c.1113A>G	c.(1111-1113)ACA>ACG	p.T371T	FBXO3_uc010rej.1_Silent_p.T58T|FBXO3_uc001muy.2_Silent_p.T258T|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Silent_p.T371T|FBXO3_uc001mvb.1_Silent_p.T366T|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	371	ApaG.				proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		ATCCTGATGTTGTAGAGAATG	0.378													3	73					0	0	1	0	0
ABTB2	25841	broad.mit.edu	37	11	34192558	34192558	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:34192558G>A	uc001mvl.1	-	5	1130	c.900C>T	c.(898-900)TTC>TTT	p.F300F		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	300							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				GGTCCTGGTTGAATTTTTCAG	0.557													6	58					0	0	1	0	0
TRAF6	7189	broad.mit.edu	37	11	36511732	36511732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:36511732G>A	uc001mwr.1	-	8	1565	c.1225C>T	c.(1225-1227)CTT>TTT	p.L409F	uc001mwq.1_5'Flank|TRAF6_uc001mws.1_Missense_Mutation_p.L409F	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	409	MATH.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				TGGACAAAAAGGGATATATAG	0.493													3	53					0	0	1	0	0
RAG2	5897	broad.mit.edu	37	11	36614248	36614248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:36614248G>A	uc001mwv.3	-	2	1659	c.1471C>T	c.(1471-1473)CCC>TCC	p.P491S	RAG1_uc001mwt.2_Intron|C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	491					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				ACTCTTTGGGGAGTGTGTAGA	0.448									Familial_Hemophagocytic_Lymphohistiocytosis				11	98					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137139	40137139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:40137139C>T	uc001mxa.1	-	2	2668	c.704G>A	c.(703-705)AGG>AAG	p.R235K	LRRC4C_uc001mxc.1_Missense_Mutation_p.R231K|LRRC4C_uc001mxd.1_Missense_Mutation_p.R231K|LRRC4C_uc001mxb.1_Missense_Mutation_p.R231K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	235	LRR 7.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AGAGCCAGGCCTGATGGCAGA	0.458													6	66					0	0	1	0	0
MTCH2	23788	broad.mit.edu	37	11	47640420	47640420	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:47640420T>C	uc010rho.1	-	13	1066	c.877A>G	c.(877-879)AAG>GAG	p.K293E	MTCH2_uc001nge.2_Missense_Mutation_p.K166E|MTCH2_uc010rhp.1_Missense_Mutation_p.K145E	NM_014342	NP_055157	Q9Y6C9	MTCH2_HUMAN	mitochondrial carrier 2	293					transport	integral to membrane|mitochondrial inner membrane					0						CAATAAGTCTTCCCAAAGGGG	0.383													14	151					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346903	48346903	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:48346903C>T	uc010rhv.1	+	1	411	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGTTGAGATCATTCTGCTCA	0.478													9	185					0	0	1	0	0
LOC646813	646813	broad.mit.edu	37	11	50378132	50378132	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:50378132G>A	uc001nhe.2	+	5		c.762G>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						AGAAGAAGAAGGATAAGGATG	0.398													7	28					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515755	51515755	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:51515755C>T	uc010ric.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCATACAGATCCTCTTCATCT	0.468													6	85					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136252	55136252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55136252C>T	uc010rif.1	+	1	893	c.893C>T	c.(892-894)TCC>TTC	p.S298F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	298	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATTGATAAATCCATGACTGTA	0.403													6	179					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55340247	55340247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55340247C>T	uc010rih.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CTAATATTCTCCTATGTCATC	0.418													3	32					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541703	55541703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55541703C>T	uc010ril.1	+	1	790	c.790C>T	c.(790-792)CCT>TCT	p.P264S		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TTACTGTGTTCCTAATCCTAA	0.463													3	37					0	0	1	0	0
OR5W2	390148	broad.mit.edu	37	11	55681863	55681863	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55681863G>A	uc010rir.1	-	1	196	c.196C>T	c.(196-198)CTG>TTG	p.L66L		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGAAAGACAGATGACTGAGG	0.398													5	70					0	0	1	0	0
OR5W2	390148	broad.mit.edu	37	11	55682056	55682056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55682056C>T	uc010rir.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTCCCAGTCCATTCTTCCTT	0.343													5	54					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735698	55735698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55735698C>T	uc010rit.1	-	1	242	c.242G>A	c.(241-243)GGA>GAA	p.G81E		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AGAAATATTTCCTTTCTGAGT	0.383													9	80					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798166	55798166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55798166G>A	uc010riw.1	+	1	272	c.272G>A	c.(271-273)AGC>AAC	p.S91N		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCCAGGAAAAGCATCTCTCCT	0.423													6	44					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873319	55873319	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55873319C>T	uc010riy.1	+	1	801	c.801C>T	c.(799-801)TCC>TCT	p.S267S		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AGTCTTATTCCTTGGGAAGAG	0.368										HNSCC(53;0.14)			6	45					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55905102	55905102	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55905102G>A	uc010riz.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AGAGCACTAGGAAGACCAGGA	0.502													14	129					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	55999633	55999633	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:55999633C>A	uc010rjc.1	-	1	1029	c.1029G>T	c.(1027-1029)ATG>ATT	p.M343I		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	343	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTTTCCCAAACATTTTTTTCA	0.318													6	53					0.0293803	0.0294605	1	1	0
OR5T2	219464	broad.mit.edu	37	11	56000423	56000423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56000423C>T	uc010rjc.1	-	1	239	c.239G>A	c.(238-240)GGA>GAA	p.G80E		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	80	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TCCTAAATTTCCCATGAGAGT	0.413													6	51					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56019765	56019765	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56019765G>A	uc010rjd.1	+	1	90	c.90G>A	c.(88-90)AGG>AGA	p.R30R		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	30	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					ATATATACAGGAATCCACTGA	0.358													7	68					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043848	56043848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56043848G>A	uc001nio.1	+	1	734	c.734G>A	c.(733-735)GGG>GAG	p.G245E		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	245	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TCTGCTGAAGGGAGGAGAAAA	0.433													8	124					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56128031	56128031	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56128031G>A	uc010rjh.1	+	1	309	c.309G>A	c.(307-309)GGG>GGA	p.G103G		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AACTGGGAGGGTTCTTGTTCT	0.423													8	65					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56128248	56128248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56128248C>T	uc010rjh.1	+	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TATAATCAATCATTTTTACTG	0.368													4	34					0	0	1	0	0
OR5M11	219487	broad.mit.edu	37	11	56310489	56310489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56310489G>A	uc010rjl.1	-	1	245	c.245C>T	c.(244-246)TCG>TTG	p.S82L		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATATTAGTCGACATCTGCGG	0.443													6	55					0	0	1	0	0
OR5M1	390168	broad.mit.edu	37	11	56380568	56380568	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56380568G>A	uc001nja.1	-	1	411	c.411C>T	c.(409-411)TCC>TCT	p.S137S		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AGATGTTCTTGGACATCCTGG	0.458													4	57					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56408980	56408980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56408980C>T	uc001njb.1	-	1	936	c.936G>A	c.(934-936)TGG>TGA	p.W312*		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						AGATGTGTTTCCATAAGATCT	0.328													4	74					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56408986	56408986	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56408986G>A	uc001njb.1	-	1	930	c.930C>T	c.(928-930)ATC>ATT	p.I310I		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GTTTCCATAAGATCTTCTTTA	0.328													3	74					0	0	1	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431749	56431749	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:56431749G>A	uc010rjm.1	+	1	588	c.588G>A	c.(586-588)GAG>GAA	p.E196E		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATCAGTGAGATCTTGCTCT	0.443													13	91					0	0	1	0	0
SMTNL1	219537	broad.mit.edu	37	11	57313818	57313818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:57313818G>A	uc009ymh.1	+	6	1240	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	396										ovary(1)	1						AAAAAAATACGAGGTGGGCAT	0.622													3	15					0	0	1	0	0
CTNND1	1500	broad.mit.edu	37	11	57575908	57575908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:57575908C>T	uc001nmc.3	+	14	2709	c.2138C>T	c.(2137-2139)TCT>TTT	p.S713F	CTNND1_uc001nlh.1_Missense_Mutation_p.S713F|CTNND1_uc001nlu.3_Missense_Mutation_p.S606F|CTNND1_uc001nlt.3_Missense_Mutation_p.S606F|CTNND1_uc001nls.3_Missense_Mutation_p.S606F|CTNND1_uc001nlw.3_Missense_Mutation_p.S606F|CTNND1_uc001nmf.3_Missense_Mutation_p.S713F|CTNND1_uc001nmd.3_Missense_Mutation_p.S659F|CTNND1_uc001nlk.3_Missense_Mutation_p.S659F|CTNND1_uc001nme.3_Missense_Mutation_p.S707F|CTNND1_uc001nll.3_Missense_Mutation_p.S653F|CTNND1_uc001nmg.3_Missense_Mutation_p.S653F|CTNND1_uc001nlj.3_Missense_Mutation_p.S653F|CTNND1_uc001nlr.3_Missense_Mutation_p.S653F|CTNND1_uc001nlp.3_Missense_Mutation_p.S653F|CTNND1_uc001nlx.3_Missense_Mutation_p.S390F|CTNND1_uc001nlz.3_Missense_Mutation_p.S390F|CTNND1_uc009ymn.2_Missense_Mutation_p.S384F|CTNND1_uc001nlm.3_Missense_Mutation_p.S707F|CTNND1_uc001nly.3_Missense_Mutation_p.S384F|CTNND1_uc001nmb.3_Missense_Mutation_p.S384F|CTNND1_uc001nma.3_Missense_Mutation_p.S384F|CTNND1_uc001nmi.3_Missense_Mutation_p.S612F|CTNND1_uc001nmh.3_Missense_Mutation_p.S707F|CTNND1_uc001nlq.3_Missense_Mutation_p.S612F|CTNND1_uc001nln.3_Missense_Mutation_p.S707F|CTNND1_uc001nli.3_Missense_Mutation_p.S707F|CTNND1_uc001nlo.3_Missense_Mutation_p.S606F|CTNND1_uc001nlv.3_Missense_Mutation_p.S606F	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	713	ARM 8.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				AAGGCTCTTTCTGCCATAGCT	0.463													4	85					0	0	1	0	0
OR1S2	219958	broad.mit.edu	37	11	57970729	57970729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:57970729C>T	uc010rkb.1	-	1	925	c.925G>A	c.(925-927)GAT>AAT	p.D309N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTTTCATATCCTTATTCCTC	0.428													13	114					0	0	1	0	0
OR1S2	219958	broad.mit.edu	37	11	57971536	57971536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:57971536G>A	uc010rkb.1	-	1	118	c.118C>T	c.(118-120)CTC>TTC	p.L40F		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AGCACAAAGAGGAGGTTTTGA	0.448													7	67					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170223	58170223	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:58170223A>T	uc010rkf.1	-	1	660	c.660T>A	c.(658-660)TTT>TTA	p.F220L		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGATGGTGATAAAAATGAATG	0.393													3	41					0	0	1	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132414	59132414	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59132414T>C	uc010rks.1	+	1	483	c.483T>C	c.(481-483)ATT>ATC	p.I161I		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TATTCCAAATTGGTGCTTTGC	0.463													7	82					0	0	1	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132584	59132584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59132584C>T	uc010rks.1	+	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCATGATATCCTATGGCTAT	0.423													7	108					0	0	1	0	0
OR5A2	219981	broad.mit.edu	37	11	59190014	59190014	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59190014G>C	uc010rkt.1	-	1	413	c.413C>G	c.(412-414)TCC>TGC	p.S138C		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	138	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGTGTATGGGATATGAGGAC	0.468													5	40					0	0	1	0	0
PATL1	219988	broad.mit.edu	37	11	59416968	59416968	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59416968T>A	uc001noe.3	-	14	1843	c.1700A>T	c.(1699-1701)GAC>GTC	p.D567V	PATL1_uc009yms.1_Missense_Mutation_p.D537V|PATL1_uc010rkw.1_Missense_Mutation_p.D272V	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	567	Region C.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						CCTTAAGTTGTCATACATGCT	0.428													3	44					0	0	1	0	0
TCN1	6947	broad.mit.edu	37	11	59623392	59623392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59623392C>T	uc001noj.2	-	6	985	c.887G>A	c.(886-888)GGA>GAA	p.G296E		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	296					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAAGGTCTTTCCCATCAGGGC	0.453													7	60					0	0	1	0	0
MS4A3	932	broad.mit.edu	37	11	59828636	59828636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:59828636G>A	uc001nom.2	+	2	131	c.3G>A	c.(1-3)ATG>ATA	p.M1I	MS4A3_uc001non.2_Missense_Mutation_p.M1I|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	1	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				CAACCCCAATGGCCTCCCACG	0.483													6	55					0	0	1	0	0
MS4A5	64232	broad.mit.edu	37	11	60201273	60201273	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:60201273C>T	uc001npo.2	+	4	461	c.375C>T	c.(373-375)GCC>GCT	p.A125A		NM_023945	NP_076434	Q9H3V2	MS4A5_HUMAN	membrane-spanning 4-domains, subfamily A, member	125	Helical; (Potential).					integral to membrane	receptor activity			large_intestine(1)|ovary(1)	2						TTCTTAGTGCCCTGGGAGCAA	0.348													11	149					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60640706	60640706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:60640706C>T	uc001nqd.2	+	7	1204	c.1184C>T	c.(1183-1185)TCG>TTG	p.S395L	ZP1_uc001nqe.2_Missense_Mutation_p.S102L	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	395	Extracellular (Potential).|ZP.				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CCACCCCCATCGCCTGCTCCT	0.602													21	240					0	0	1	0	0
TMEM109	79073	broad.mit.edu	37	11	60689406	60689406	+	Silent	SNP	C	T	T	rs143462464	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:60689406C>T	uc001nqg.2	+	4	879	c.501C>T	c.(499-501)ATC>ATT	p.I167I	TMEM109_uc001nqh.2_Silent_p.I167I|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	167	Helical; (Potential).					integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						AGCTTGTCATCTTCCTGGCCG	0.662													15	125					0	0	1	0	0
SLC15A3	51296	broad.mit.edu	37	11	60709553	60709553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:60709553G>A	uc001nqn.2	-	4	1295	c.1061C>T	c.(1060-1062)CCG>CTG	p.P354L	SLC15A3_uc001nqo.2_Missense_Mutation_p.P354L	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	354					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GATGTTGGCCGGGTTGGCTGG	0.572													23	234					0	0	1	0	0
CD5	921	broad.mit.edu	37	11	60886789	60886789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:60886789G>A	uc009ynk.2	+	5	650	c.547G>A	c.(547-549)GGT>AGT	p.G183S		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	183	Extracellular (Potential).|SRCR 2.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		CAGCCTGGGGGGTACCATCAG	0.617													10	90					0	0	1	0	0
DDB1	1642	broad.mit.edu	37	11	61070607	61070607	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:61070607G>A	uc001nrc.3	-	23	3079	c.2853C>T	c.(2851-2853)CCC>CCT	p.P951P	DDB1_uc010rle.1_Silent_p.P262P|DDB1_uc010rlf.1_Silent_p.P951P	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	951	Interaction with CDT1 and CUL4A.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						TCATCCAGTTGGGATTAAAGT	0.413								NER					25	202					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62291010	62291010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:62291010G>A	uc001ntl.2	-	5	11179	c.10879C>T	c.(10879-10881)CCT>TCT	p.P3627S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3627					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCAGCTTTAGGGAGGGTAACA	0.483													20	236					0	0	1	0	0
CHRM1	1128	broad.mit.edu	37	11	62677831	62677831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:62677831C>T	uc001nwi.2	-	2	1143	c.742G>A	c.(742-744)GCT>ACT	p.A248T		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	248	Cytoplasmic (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	GAGCCCTCAGCCCCTGGCTGA	0.667													6	30					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149694	63149694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:63149694G>A	uc001nww.2	+	6	1286	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	340	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TTCTCTGTGTGAAATGCTCCA	0.398													6	72					0	0	1	0	0
HRASLS5	117245	broad.mit.edu	37	11	63233701	63233701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:63233701C>T	uc001nwy.2	-	5	802	c.628G>A	c.(628-630)GAC>AAC	p.D210N	HRASLS5_uc001nwz.2_Missense_Mutation_p.D200N|HRASLS5_uc010rmq.1_Missense_Mutation_p.D210N|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	210										ovary(1)	1						ATGATCTTGTCCACCGGCAAG	0.512													7	65					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63276383	63276383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:63276383G>A	uc001nxa.2	+	3	699	c.358G>A	c.(358-360)GAG>AAG	p.E120K	LGALS12_uc001nxb.2_Missense_Mutation_p.E120K|LGALS12_uc001nxc.2_Missense_Mutation_p.E121K|LGALS12_uc001nxd.2_Missense_Mutation_p.E59K|LGALS12_uc001nxe.2_Missense_Mutation_p.E59K|LGALS12_uc009yot.2_Missense_Mutation_p.E80K	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	120	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CTGGCAAAGGGAGGCCCGGTG	0.602													11	69					0	0	1	0	0
HRASLS2	54979	broad.mit.edu	37	11	63327644	63327644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:63327644C>T	uc001nxg.1	-	2	90	c.31G>A	c.(31-33)GGA>AGA	p.G11R		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	11					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						ATCAGGTCTCCAAGTCTCGGT	0.542													16	146					0	0	1	0	0
SLC22A11	55867	broad.mit.edu	37	11	64326684	64326684	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64326684C>T	uc001oai.2	+	2	845	c.471C>T	c.(469-471)TCC>TCT	p.S157S	SLC22A11_uc001oah.1_Intron|SLC22A11_uc001oaj.2_Silent_p.S157S|SLC22A11_uc009ypq.2_Silent_p.S157S|SLC22A11_uc001oak.1_5'Flank	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	157	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TGGTGGGCTCCTTTATCTGGG	0.602													8	74					0	0	1	0	0
SLC22A11	55867	broad.mit.edu	37	11	64337275	64337275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64337275C>T	uc001oai.2	+	9	1908	c.1534C>T	c.(1534-1536)CTC>TTC	p.L512F	SLC22A11_uc001oaj.2_Intron|SLC22A11_uc009ypq.2_Missense_Mutation_p.L404F	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	512	Cytoplasmic (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	GCTGTTCTTCCTCCCGGAGAC	0.622													10	148					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64453331	64453331	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64453331C>T	uc001oar.2	-	7	1378	c.939G>A	c.(937-939)GAG>GAA	p.E313E	NRXN2_uc001oas.2_Silent_p.E289E|NRXN2_uc001oaq.2_5'UTR	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCAGTGTGATCTCATCAGTGC	0.572													12	138					0	0	1	0	0
RASGRP2	10235	broad.mit.edu	37	11	64494806	64494806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64494806C>T	uc009ypu.2	-	16	2025	c.1798G>A	c.(1798-1800)GTG>ATG	p.V600M	RASGRP2_uc001oat.2_Missense_Mutation_p.V503M|RASGRP2_uc001oau.2_Missense_Mutation_p.V456M|RASGRP2_uc009ypv.2_Missense_Mutation_p.V600M|RASGRP2_uc009ypw.2_Missense_Mutation_p.V600M	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	600					platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CCATCCTCCACCGTCTGTACC	0.602													11	107					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64595227	64595227	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64595227G>A	uc001obs.3	-	31	3996	c.3996C>T	c.(3994-3996)TTC>TTT	p.F1332F		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1332	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						AGTTCTCGCTGAACACTGTCA	0.627													8	94					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64665636	64665636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64665636G>A	uc001obx.2	-	34	4895	c.4780C>T	c.(4780-4782)CTC>TTC	p.L1594F	ATG2A_uc001obw.2_Missense_Mutation_p.L359F	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1594							protein binding			ovary(1)|central_nervous_system(1)	2						AGGAAGAAGAGGGCATCCTGC	0.622											OREG0004029	type=REGULATORY REGION|Gene=BC033850|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	107					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64684437	64684437	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:64684437C>T	uc001obx.2	-	1	286	c.171G>A	c.(169-171)TGG>TGA	p.W57*	ATG2A_uc010rnt.1_Nonsense_Mutation_p.W57*	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	57							protein binding			ovary(1)|central_nervous_system(1)	2						GGCTCCTCACCCAGATTTCCA	0.647													4	37					0	0	1	0	0
MALAT1	378938	broad.mit.edu	37	11	65273616	65273616	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:65273616C>T	uc010roh.1	+	1		c.8384C>T			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCCTGGTTTCCAGGACGGGGT	0.413													8	50					0	0	1	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65359559	65359559	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:65359559G>A	uc001oeo.3	+	18	4735	c.4470G>A	c.(4468-4470)CGG>CGA	p.R1490R		NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	1490	Potential.									central_nervous_system(1)	1						ACAAGGAGCGGATGTGAGTGG	0.677													8	57					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65824770	65824770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:65824770C>T	uc001ogy.1	+	7	741	c.701C>T	c.(700-702)CCT>CTT	p.P234L		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	234					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						GGCCCCACTCCTACAGTTTTG	0.537													14	203					0	0	1	0	0
RIN1	9610	broad.mit.edu	37	11	66100813	66100813	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66100813G>A	uc001ohn.1	-	9	1918	c.1791C>T	c.(1789-1791)ACC>ACT	p.T597T	RIN1_uc010roy.1_Silent_p.T228T|RIN1_uc009yrd.1_Silent_p.T290T|RIN1_uc010roz.1_Silent_p.T492T|RIN1_uc010rpa.1_Silent_p.T431T	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	597	VPS9.|Ras and 14-3-3 protein binding region.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						TCAGTGGGAGGGTGTGGGCCT	0.682													6	38					0	0	1	0	0
B3GNT1	11041	broad.mit.edu	37	11	66114102	66114102	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66114102G>A	uc001ohr.2	-	1	1060	c.915C>T	c.(913-915)GTC>GTT	p.V305V	BRMS1_uc001ohp.1_5'Flank|BRMS1_uc001oho.1_5'Flank	NM_006876	NP_006867	O43505	B3GN1_HUMAN	UDP-GlcNAc:betaGal	305	Lumenal (Potential).				poly-N-acetyllactosamine biosynthetic process	integral to Golgi membrane	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity				0						CCGGCAGGTTGACCCAGCGGG	0.627													8	86					0	0	1	0	0
BBS1	582	broad.mit.edu	37	11	66294177	66294177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66294177G>A	uc001oij.1	+	13	1250	c.1238G>A	c.(1237-1239)AGT>AAT	p.S413N	BBS1_uc001oii.1_Missense_Mutation_p.S450N|BBS1_uc010rpg.1_Missense_Mutation_p.S316N|BBS1_uc001oik.1_Missense_Mutation_p.S337N|BBS1_uc001oil.1_Missense_Mutation_p.S284N|ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron|BBS1_uc010rph.1_Missense_Mutation_p.S81N	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	413					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						GAGGGAGGAAGTGAGGTGGGT	0.572									Bardet-Biedl_syndrome				12	168					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66359357	66359357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66359357C>T	uc001oiq.3	-	1	1198	c.1130G>A	c.(1129-1131)GGC>GAC	p.G377D	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	377										ovary(1)|skin(1)	2						AGGAGGCAGGCCTGAGTCCAG	0.582													9	90					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66454513	66454514	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66454513_66454514CC>TT	uc001ojd.2	-	35	6919_6920	c.6847_6848GG>AA	c.(6847-6849)GGC>AAC	p.G2283N	SPTBN2_uc001ojc.1_Missense_Mutation_p.A144T	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	2283	PH.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGCGACGCTGCCCTGGGCCCTG	0.614													17	165					0	0	1	0	0
LRFN4	78999	broad.mit.edu	37	11	66626556	66626556	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66626556C>T	uc001ojr.2	+	1	1681	c.1341C>T	c.(1339-1341)CTC>CTT	p.L447L	PC_uc001ojo.1_Intron|PC_uc001ojp.1_Intron|PC_uc001ojn.1_Intron|LRFN4_uc001ojs.2_Intron	NM_024036	NP_076941	Q6PJG9	LRFN4_HUMAN	leucine rich repeat and fibronectin type III	447	Extracellular (Potential).|Fibronectin type-III.					integral to membrane					0						ATGAGACCCTCATCTACCGGT	0.652													28	145					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66807513	66807513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66807513G>A	uc009yrl.2	+	4	690	c.460G>A	c.(460-462)GGC>AGC	p.G154S	SYT12_uc001oju.2_Missense_Mutation_p.G154S	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	154	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						CTTCACACTGGGCCAGGTGGA	0.642													9	102					0	0	1	0	0
KDM2A	22992	broad.mit.edu	37	11	66999121	66999121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:66999121C>T	uc001ojw.2	+	12	2033	c.1169C>T	c.(1168-1170)TCT>TTT	p.S390F	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.S84F	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	390					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						AGCAGGCGTTCTGTCCTCACT	0.502													4	14					0	0	1	0	0
KDM2A	22992	broad.mit.edu	37	11	67020265	67020265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:67020265C>T	uc001ojw.2	+	18	3733	c.2869C>T	c.(2869-2871)CTT>TTT	p.L957F	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.L651F|KDM2A_uc001ojz.1_Missense_Mutation_p.L415F|KDM2A_uc001oka.2_Missense_Mutation_p.L81F	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	957					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						GCCAGTCAGCCTTGACCTCAG	0.537											OREG0021121	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	49					0	0	1	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67171795	67171795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:67171795G>A	uc001ola.2	+	2	151	c.122G>A	c.(121-123)GGA>GAA	p.G41E	PPP1CA_uc009yro.1_5'Flank|PPP1CA_uc001okt.1_5'Flank|PPP1CA_uc001oku.1_5'Flank|PPP1CA_uc001okv.1_5'Flank|PPP1CA_uc001okw.1_5'Flank|PPP1CA_uc001okx.1_Intron|PPP1CA_uc001oky.2_5'Flank|TBC1D10C_uc001okz.2_Missense_Mutation_p.G41E|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	41						intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GACCGCTATGGATTCATTGGG	0.652													4	59					0	0	1	0	0
CARNS1	57571	broad.mit.edu	37	11	67191701	67191701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:67191701G>A	uc009yrp.2	+	9	2565	c.2113G>A	c.(2113-2115)GAG>AAG	p.E705K	CARNS1_uc001olc.3_Missense_Mutation_p.E844K	NM_020811	NP_065862	A5YM72	CRNS1_HUMAN	ATP-grasp domain containing 1	705	ATP-grasp.				carnosine biosynthetic process		ATP binding|carnosine synthase activity|metal ion binding				0						TTGGATCCTGGAGCTCTATGG	0.627													5	74					0	0	1	0	0
TCIRG1	10312	broad.mit.edu	37	11	67816614	67816614	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:67816614C>T	uc001one.2	+	15	1848	c.1740C>T	c.(1738-1740)CTC>CTT	p.L580L	TCIRG1_uc001ong.2_Silent_p.L364L|TCIRG1_uc001onh.2_Silent_p.L282L|TCIRG1_uc001oni.2_Silent_p.L84L|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	580	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						TGCTGGGACTCTTCGGTTACC	0.627													13	146					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68181170	68181170	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:68181170C>T	uc001ont.2	+	12	2592	c.2517C>T	c.(2515-2517)GTC>GTT	p.V839V	LRP5_uc009ysg.2_Silent_p.V249V	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	839	LDL-receptor class B 14.|Beta-propeller 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						AGGAGCGGGTCGTGATTGCCG	0.612													8	114					0	0	1	0	0
MRPL21	219927	broad.mit.edu	37	11	68671265	68671265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:68671265G>A	uc001ooi.2	-	1	39	c.14C>T	c.(13-15)TCC>TTC	p.S5F	IGHMBP2_uc001ooj.1_5'Flank|IGHMBP2_uc001ook.1_5'Flank|MRPL21_uc001ooh.2_5'UTR|MRPL21_uc010rqe.1_Missense_Mutation_p.S5F	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	5					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GACCGTCAGGGAAGATGCTGC	0.677													17	128					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68675728	68675728	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:68675728C>T	uc001ook.1	+	3	474	c.372C>T	c.(370-372)TTC>TTT	p.F124F	IGHMBP2_uc001ooj.1_RNA	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	124					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCCACGATTTCCAGTTGAGCT	0.507													12	110					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71152365	71152365	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:71152365G>A	uc001oqk.2	-	6	784	c.534C>T	c.(532-534)ATC>ATT	p.I178I	DHCR7_uc001oql.2_Silent_p.I178I	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	178	Helical; (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	ACAGCAGTGGGATCCAGTTGT	0.577									Smith-Lemli-Opitz_syndrome				14	97					0	0	1	0	0
NUMA1	4926	broad.mit.edu	37	11	71724778	71724778	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:71724778G>A	uc001orl.1	-	15	3943	c.3771C>T	c.(3769-3771)GCC>GCT	p.A1257A	NUMA1_uc009ysw.1_Silent_p.A820A|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Silent_p.A1257A|NUMA1_uc001orn.2_Silent_p.A820A|NUMA1_uc009ysx.1_Silent_p.A1257A|NUMA1_uc001oro.1_Silent_p.A1257A	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1257	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCTCTGACTCGGCCATCACCA	0.607			T	RARA	APL								8	112					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72945257	72945257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:72945257G>A	uc001otj.2	+	3	386	c.53G>A	c.(52-54)GGG>GAG	p.G18E	P2RY2_uc001otk.2_Missense_Mutation_p.G18E|P2RY2_uc001otl.2_Missense_Mutation_p.G18E	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	18	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	ACCTGGGATGGGGATGAGCTG	0.637													7	89					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72945398	72945398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:72945398G>A	uc001otj.2	+	3	527	c.194G>A	c.(193-195)TGG>TAG	p.W65*	P2RY2_uc001otk.2_Nonsense_Mutation_p.W65*|P2RY2_uc001otl.2_Nonsense_Mutation_p.W65*	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	65	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	CTCAAGACCTGGAATGCGTCC	0.602													5	122					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73680333	73680333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:73680333C>T	uc001ouo.2	+	7	1514	c.763C>T	c.(763-765)CGT>TGT	p.R255C		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	255					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					CCTAGATGACCGTCTGCTCAA	0.572													10	104					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73680366	73680366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:73680366C>T	uc001ouo.2	+	7	1547	c.796C>T	c.(796-798)CAC>TAC	p.H266Y		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	266					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					TGACATCATCCAGTGAGTCCA	0.483													12	92					0	0	1	0	0
POLD3	10714	broad.mit.edu	37	11	74329632	74329633	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:74329632_74329633CC>TT	uc001ovf.1	+	6	518_519	c.443_444CC>TT	c.(442-444)TCC>TTT	p.S148F	POLD3_uc009yua.1_Missense_Mutation_p.S42F	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	148					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					CCTGCTGAATCCTCTTCGTCTT	0.455													10	167					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75440017	75440017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:75440017G>A	uc010rru.1	+	5	833	c.833G>A	c.(832-834)CGG>CAG	p.R278Q	MOGAT2_uc001oww.1_3'UTR|MOGAT2_uc010rrv.1_Missense_Mutation_p.R196Q	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	278					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					CCCTACCGCCGGCCCATCACC	0.458													8	108					0	0	1	0	0
WNT11	7481	broad.mit.edu	37	11	75902838	75902838	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:75902838G>A	uc001oxe.2	-	4	783	c.660C>T	c.(658-660)ATC>ATT	p.I220I	WNT11_uc001oxf.1_Silent_p.I220I	NM_004626	NP_004617	O96014	WNT11_HUMAN	wingless-type MMTV integration site family,	220					adrenal gland development|anterior/posterior pattern formation|artery morphogenesis|axis specification|bone mineralization|cellular response to retinoic acid|cloacal septation|embryonic skeletal system development|endoderm development|lung-associated mesenchyme development|mesonephric duct development|negative regulation of apoptosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell migration|negative regulation of transcription, DNA-dependent|neuroendocrine cell differentiation|neuron differentiation|osteoblast differentiation|outflow tract morphogenesis|palate development|positive regulation of cell migration|positive regulation of protein kinase C signaling cascade|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor-beta2 production|protein localization at cell surface|protein phosphorylation|tight junction assembly|ureteric bud morphogenesis|ventricular septum morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|protein kinase activator activity|Ras GTPase activator activity|transcription regulatory region DNA binding			lung(1)|skin(1)	2						AGCAGGTGCGGATGGAGCAGG	0.632													4	61					0	0	1	0	0
PRKRIR	5612	broad.mit.edu	37	11	76062722	76062722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:76062722G>A	uc001oxh.1	-	5	1472	c.1472C>T	c.(1471-1473)TCT>TTT	p.S491F	PRKRIR_uc010rrz.1_Missense_Mutation_p.S316F	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	491					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						TCTTGTAAAAGATAGGACATT	0.423													5	45					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76371305	76371305	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:76371305G>A	uc001oxq.3	-	3	1575	c.1332C>T	c.(1330-1332)TCC>TCT	p.S444S	LRRC32_uc001oxr.3_Silent_p.S444S|LRRC32_uc010rsf.1_Silent_p.S444S	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	444	LRR 16.|Extracellular (Potential).					integral to plasma membrane					0						GGCTGCGGAGGGAGGTGATGC	0.647													3	15					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76372307	76372307	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:76372307C>T	uc001oxq.3	-	3	573	c.330G>A	c.(328-330)GCG>GCA	p.A110A	LRRC32_uc001oxr.3_Silent_p.A110A|LRRC32_uc010rsf.1_Silent_p.A110A	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	110	LRR 3.|Extracellular (Potential).					integral to plasma membrane					0						CAGTGGCCATCGCCAGCCGGT	0.672													3	49					0	0	1	0	0
CAPN5	726	broad.mit.edu	37	11	76830114	76830114	+	Silent	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:76830114G>T	uc001oxx.2	+	9	1391	c.1206G>T	c.(1204-1206)CTG>CTT	p.L402L	CAPN5_uc009yup.2_Silent_p.L442L|CAPN5_uc009yuq.2_Silent_p.L438L|CAPN5_uc001oxy.2_Silent_p.L442L|CAPN5_uc001oya.2_5'Flank	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	402	Domain III.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						ATGAAGTCCTGATCTGCATCC	0.398													3	37					1	1	1	1	0
MYO7A	4647	broad.mit.edu	37	11	76900501	76900501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:76900501G>A	uc001oyb.2	+	28	3888	c.3616G>A	c.(3616-3618)GAG>AAG	p.E1206K	MYO7A_uc010rsm.1_Missense_Mutation_p.E1195K|MYO7A_uc001oyc.2_Missense_Mutation_p.E1206K|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.E417K	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1206	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CGCCCCCTCCGAGAAGTTTGT	0.622													15	126					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88323882	88323882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:88323882C>T	uc001pcq.2	-	6	1777	c.1577G>A	c.(1576-1578)GGA>GAA	p.G526E	GRM5_uc009yvm.2_Missense_Mutation_p.G526E	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	526	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GCTGACTTCTCCCTTTCGGAT	0.393													5	81					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89537428	89537428	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:89537428C>T	uc001pdb.2	-	3	539	c.210G>A	c.(208-210)TTG>TTA	p.L70L		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	70						intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CCATCTTCTTCAAATGAATGT	0.443													5	41					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087298	92087298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:92087298G>A	uc001pdj.3	+	1	2037	c.2020G>A	c.(2020-2022)GGG>AGG	p.G674R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	674	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGTCCTACATGGGAAAGTGTC	0.408										TCGA Ovarian(4;0.039)			4	29					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92532375	92532375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:92532375G>A	uc001pdj.3	+	9	6213	c.6196G>A	c.(6196-6198)GCC>ACC	p.A2066T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2066	Extracellular (Potential).|Cadherin 18.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTGCGTGTGGCCAGAGTGGT	0.512										TCGA Ovarian(4;0.039)			7	42					0	0	1	0	0
C11orf75	56935	broad.mit.edu	37	11	93212284	93212284	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:93212284C>T	uc001pds.3	-	3	330	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	C11orf75_uc001pdr.2_RNA	NM_020179	NP_064564	Q9NRQ5	CK075_HUMAN	hypothetical protein LOC56935	24						integral to membrane					0		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				GCCGGGCCTCCTGCATGGCTT	0.597													3	80					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93836151	93836151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:93836151C>T	uc001pep.2	+	15	2804	c.2647C>T	c.(2647-2649)CCA>TCA	p.P883S	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	883	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CAATTGTATTCCATGGGTTTA	0.348													5	59					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113902	94113902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:94113902G>A	uc001pet.2	-	4	857	c.685C>T	c.(685-687)CCT>TCT	p.P229S		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	229	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GCTGGCTCAGGGAAGTCTGGC	0.572													6	78					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94129654	94129654	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:94129654C>G	uc001pet.2	-	2	596	c.424G>C	c.(424-426)GGC>CGC	p.G142R		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	142	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TGGCACATGCCCTTCCCAAAT	0.552													7	85					0	0	1	0	0
MRE11A	4361	broad.mit.edu	37	11	94153332	94153332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:94153332G>A	uc001peu.2	-	20	2275	c.2086C>T	c.(2086-2088)CCT>TCT	p.P696S	MRE11A_uc001pev.2_Missense_Mutation_p.P668S|MRE11A_uc009ywj.2_Missense_Mutation_p.P699S	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	696					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				TTCATAAAAGGATCATCATCA	0.323								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				7	76					0	0	1	0	0
MAML2	84441	broad.mit.edu	37	11	95826438	95826438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:95826438G>A	uc001pfw.1	-	2	2042	c.757C>T	c.(757-759)CCT>TCT	p.P253S		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	253					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CCATTGCCAGGAGAATGTGTA	0.478			T	MECT1|CRTC3	salivary gland mucoepidermoid								5	55					0	0	1	0	0
CASP1	834	broad.mit.edu	37	11	104897586	104897586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:104897586C>T	uc010rve.1	-	8	1116	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K	CASP1_uc001pig.2_Missense_Mutation_p.E274K|CASP1_uc001pik.2_Missense_Mutation_p.E330K|CASP1_uc010rvf.1_Missense_Mutation_p.E274K|CASP1_uc010rvg.1_Missense_Mutation_p.E346K|CASP1_uc010rvh.1_Missense_Mutation_p.E226K|CASP1_uc010rvi.1_Missense_Mutation_p.E51K|CASP1_uc001pim.3_Missense_Mutation_p.E367K|CASP1_uc009yxi.2_Missense_Mutation_p.E346K|CASP1_uc010rvj.1_Missense_Mutation_p.E367K|CASP1_uc009yxj.2_Missense_Mutation_p.E212K|CASP1_uc010rvk.1_3'UTR	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	367					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	AAAATTTCCTCCACATCACAG	0.408													10	65					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113209547	113209547	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:113209547C>T	uc001pnu.2	+	9	733	c.628C>T	c.(628-630)CAG>TAG	p.Q210*	TTC12_uc001pnv.2_Nonsense_Mutation_p.Q216*|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Nonsense_Mutation_p.Q60*	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	210							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GCTGCAAACCCAGGTGAAAGG	0.483													5	93					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113673885	113673885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:113673885G>A	uc001poh.2	-	23	2890	c.2857C>T	c.(2857-2859)CTT>TTT	p.L953F	USP28_uc001pog.2_Missense_Mutation_p.L629F|USP28_uc010rwy.1_Missense_Mutation_p.L796F|USP28_uc001poi.2_Missense_Mutation_p.L276F	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	953					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		CAAACCAGAAGGCATTTTCTT	0.458													11	119					0	0	1	0	0
FAM55A	120400	broad.mit.edu	37	11	114400916	114400916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:114400916C>T	uc001ppa.2	-	3	805	c.388G>A	c.(388-390)GAA>AAA	p.E130K	FAM55A_uc010rxd.1_5'UTR|FAM55A_uc001ppb.1_Missense_Mutation_p.E272K	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	272						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		AGGCTGTTTTCCTTGTCTGTA	0.463													6	53					0	0	1	0	0
CADM1	23705	broad.mit.edu	37	11	115085432	115085432	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:115085432T>C	uc001ppi.3	-	7	1019	c.890A>G	c.(889-891)AAC>AGC	p.N297S	CADM1_uc001ppf.3_Missense_Mutation_p.N297S|CADM1_uc001ppk.3_Missense_Mutation_p.N297S|CADM1_uc001ppj.3_Missense_Mutation_p.N297S|CADM1_uc001ppl.2_Missense_Mutation_p.N297S|CADM1_uc001pph.3_Missense_Mutation_p.N49S	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	297	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		GATGAACAGGTTGGGCCCAGA	0.473													8	99					0	0	1	0	0
SIDT2	51092	broad.mit.edu	37	11	117056931	117056931	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:117056931G>A	uc001pqh.1	+	9	995	c.954G>A	c.(952-954)GAG>GAA	p.E318E	SIDT2_uc010rxe.1_Silent_p.E318E|SIDT2_uc001pqg.2_Silent_p.E318E|SIDT2_uc001pqi.1_Silent_p.E318E	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	318	Cytoplasmic (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		CCTGCTGGGAGAACTGGAGGT	0.572													8	72					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117307940	117307940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:117307940C>T	uc001prh.1	-	26	4800	c.4798G>A	c.(4798-4800)GAA>AAA	p.E1600K		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1540	Extracellular (Potential).|Fibronectin type-III 6.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TCTCGCAGTTCCGTCAGAAAC	0.652													6	156					0	0	1	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117973868	117973868	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:117973868C>T	uc010rxo.1	+	4	501	c.210C>T	c.(208-210)TTC>TTT	p.F70F	TMPRSS4_uc010rxp.1_Silent_p.F70F|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_Silent_p.F45F|TMPRSS4_uc010rxs.1_Silent_p.F30F|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_Silent_p.F45F	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	70	Extracellular (Potential).|LDL-receptor class A.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		CTCTCCACTTCATCCCGAGGA	0.592													14	196					0	0	1	0	0
IFT46	56912	broad.mit.edu	37	11	118425749	118425749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:118425749G>A	uc001ptp.1	-	6	688	c.310C>T	c.(310-312)CCT>TCT	p.P104S	IFT46_uc001pto.1_Missense_Mutation_p.P155S|IFT46_uc009zaf.1_Missense_Mutation_p.P155S	NM_020153	NP_064538	Q9NQC8	IFT46_HUMAN	IFT46	104					flagellum assembly|intraflagellar transport|protein stabilization	microtubule basal body|microtubule-based flagellum|nucleus	protein C-terminus binding				0						ATAAAATCAGGAATGAAAGGC	0.423													8	109					0	0	1	0	0
TRIM29	23650	broad.mit.edu	37	11	119986103	119986103	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:119986103C>T	uc001pwz.2	-	8	1771	c.1647G>A	c.(1645-1647)CGG>CGA	p.R549R	TRIM29_uc001pwx.2_RNA|TRIM29_uc001pwy.2_Silent_p.R82R|TRIM29_uc010rzi.1_Silent_p.R288R|TRIM29_uc010rzj.1_Silent_p.R282R|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	549					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		GGCTTTGGCTCCGCATGAGGG	0.622													5	43					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120776035	120776035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:120776035G>A	uc001pxn.2	+	13	1596	c.1309G>A	c.(1309-1311)GAG>AAG	p.E437K	GRIK4_uc009zav.1_Missense_Mutation_p.E437K|GRIK4_uc009zaw.1_Missense_Mutation_p.E437K|GRIK4_uc009zax.1_Missense_Mutation_p.E437K	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	437	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GAACCACCAGGAGATGGAAGG	0.542													17	302					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121500260	121500260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:121500260G>A	uc001pxx.2	+	48	6713	c.6633G>A	c.(6631-6633)ATG>ATA	p.M2211I	SORL1_uc010rzp.1_Missense_Mutation_p.M1057I|SORL1_uc010rzq.1_Missense_Mutation_p.M826I	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2211	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ACGTCCCCATGGTGATAGCCT	0.383													10	76					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810344	123810344	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:123810344C>T	uc001pzk.1	+	1	21	c.21C>T	c.(19-21)TCC>TCT	p.S7S		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAAATCATTCCCAGGTGGCAG	0.418													14	90					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810754	123810754	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:123810754T>C	uc001pzk.1	+	1	431	c.431T>C	c.(430-432)CTT>CCT	p.L144P		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TGTGCACTCCTTATGGCAGCC	0.517													5	75					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813930	123813930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:123813930C>T	uc010sab.1	-	1	616	c.616G>A	c.(616-618)GTG>ATG	p.V206M		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CCCAGTAACACCAACGTAGAG	0.532													5	45					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095447	124095447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:124095447G>A	uc010saf.1	+	1	50	c.50G>A	c.(49-51)GGA>GAA	p.G17E		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	17						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATGTCAGCAGGAAACCATTCC	0.478													3	40					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124096240	124096240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:124096240G>A	uc010saf.1	+	1	843	c.843G>A	c.(841-843)ATG>ATA	p.M281I		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	281						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TCAGCTCCATGGACCAGGGGA	0.473													12	75					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189925	124189925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:124189925G>A	uc010sah.1	-	1	169	c.169C>T	c.(169-171)CCT>TCT	p.P57S		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TACACTGGAGGGTAAAGTTGA	0.438													6	53					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124440137	124440137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:124440137G>A	uc010san.1	+	1	173	c.173G>A	c.(172-174)GGG>GAG	p.G58E		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	58	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		ACCATCGTGGGGAACCTGGGC	0.502													8	72					0	0	1	0	0
HEPACAM	220296	broad.mit.edu	37	11	124805822	124805822	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:124805822C>T	uc001qbk.2	-	1	487	c.81G>A	c.(79-81)CAG>CAA	p.Q27Q	HEPACAM_uc001qbl.1_Silent_p.Q27Q	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	27					cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TCCTACCTGTCTGGATCAGAA	0.582													4	21					0	0	1	0	0
PATE2	399967	broad.mit.edu	37	11	125647862	125647862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:125647862G>A	uc001qcu.2	-	3	158	c.112C>T	c.(112-114)CAT>TAT	p.H38Y	PATE2_uc010sbj.1_Intron	NM_212555	NP_997720	Q6UY27	PATE2_HUMAN	prostate and testis expressed 2 precursor	38						extracellular space					0						AACCCAAGATGATATTTTTTA	0.418													7	44					0	0	1	0	0
NFRKB	4798	broad.mit.edu	37	11	129747256	129747256	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:129747256G>A	uc001qfi.2	-	16	1737	c.1536C>T	c.(1534-1536)CCC>CCT	p.P512P	NFRKB_uc001qfg.2_Silent_p.P537P|NFRKB_uc001qfh.2_Silent_p.P535P|NFRKB_uc010sbw.1_Silent_p.P522P|NFRKB_uc009zcr.2_5'Flank	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	512					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		CCCCCGTGCTGGGACGCACCA	0.512													21	214					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130064064	130064064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr11:130064064C>T	uc001qfw.2	+	8	1089	c.896C>T	c.(895-897)CCC>CTC	p.P299L	ST14_uc010sca.1_Missense_Mutation_p.P109L	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	299	Extracellular (Potential).|CUB 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	ACCTACCCTCCCTCCTACAAC	0.587													23	235					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	208322	208322	+	Translation_Start_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:208322G>A	uc001qhu.1	+	2	348	c.-64G>A	c.(-66--62)CCGTG>CCATG		IQSEC3_uc001qht.1_Translation_Start_Site	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3						regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		GAATGAGACCGTGCTGCACCA	0.637													4	37					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	247556	247556	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:247556C>T	uc001qhw.1	+	1	124	c.118C>T	c.(118-120)CTG>TTG	p.L40L	IQSEC3_uc001qhu.1_Silent_p.L40L|IQSEC3_uc001qht.1_Silent_p.L125L|uc001qhv.1_RNA	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	343	IQ.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		CAACTCGCTTCTGGAGAGCCG	0.662													3	33					0	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	438196	438196	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:438196C>T	uc001qif.1	-	14	2137	c.1774_splice	c.e14-1	p.L592_splice	KDM5A_uc001qie.1_Splice_Site_p.L592_splice|KDM5A_uc010sdn.1_Splice_Site_p.L551_splice|KDM5A_uc010sdo.1_Splice_Site_p.L211_splice	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1						chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						CAATGGGCAACTGAAAATGAG	0.423			T 	NUP98	AML								5	35					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1965396	1965396	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:1965396C>T	uc001qjp.2	-	21	2240	c.2009_splice	c.e21-1	p.G670_splice	CACNA2D4_uc009zds.1_Splice_Site|CACNA2D4_uc009zdt.1_Splice_Site_p.G534_splice|CACNA2D4_uc009zdr.1_5'Flank	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4							integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TCATGCAGGCCTGAAACCAGA	0.507													23	268					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2716264	2716264	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:2716264C>T	uc009zdu.1	+	27	3697	c.3384C>T	c.(3382-3384)CTC>CTT	p.L1128L	CACNA1C_uc009zdv.1_Silent_p.L1105L|CACNA1C_uc001qkb.2_Silent_p.L1108L|CACNA1C_uc001qkc.2_Silent_p.L1108L|CACNA1C_uc001qke.2_Silent_p.L1108L|CACNA1C_uc001qkf.2_Silent_p.L1108L|CACNA1C_uc001qjz.2_Silent_p.L1108L|CACNA1C_uc001qkd.2_Silent_p.L1108L|CACNA1C_uc001qkg.2_Silent_p.L1108L|CACNA1C_uc009zdw.1_Silent_p.L1108L|CACNA1C_uc001qkh.2_Silent_p.L1108L|CACNA1C_uc001qkl.2_Silent_p.L1128L|CACNA1C_uc001qkn.2_Silent_p.L1108L|CACNA1C_uc001qko.2_Silent_p.L1128L|CACNA1C_uc001qkp.2_Silent_p.L1108L|CACNA1C_uc001qkr.2_Silent_p.L1108L|CACNA1C_uc001qku.2_Silent_p.L1108L|CACNA1C_uc001qkq.2_Silent_p.L1108L|CACNA1C_uc001qks.2_Silent_p.L1108L|CACNA1C_uc001qkt.2_Silent_p.L1108L|CACNA1C_uc001qka.1_Silent_p.L643L|CACNA1C_uc001qki.1_Silent_p.L844L|CACNA1C_uc001qkj.1_Silent_p.L844L|CACNA1C_uc001qkk.1_Silent_p.L844L|CACNA1C_uc001qkm.1_Silent_p.L844L	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1128	Extracellular (Potential).|III.|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGATGGCCCTCTTCACCGTCT	0.562													4	31					0	0	1	0	0
NRIP2	83714	broad.mit.edu	37	12	2944067	2944067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:2944067C>T	uc001qlc.2	-	1	155	c.83G>A	c.(82-84)GGA>GAA	p.G28E	NRIP2_uc010sed.1_Missense_Mutation_p.G28E|uc009zdz.1_5'Flank	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	28					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			TCTGCTTCTTCCTGCCTGTCT	0.607													6	57					0	0	1	0	0
FGF6	2251	broad.mit.edu	37	12	4543502	4543502	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:4543502T>A	uc001qmr.1	-	3	550	c.506A>T	c.(505-507)AAT>ATT	p.N169I		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	169					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			CTCGTAGGCATTGTAATTGTT	0.512													16	186					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4736296	4736296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:4736296C>T	uc001qnb.3	-	4	2001	c.1772G>A	c.(1771-1773)AGG>AAG	p.R591K		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	591					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GAAAACACTCCTTAGGTCCTT	0.463													10	112					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919217	4919217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:4919217G>A	uc001qng.2	+	1	876	c.10G>A	c.(10-12)GAG>AAG	p.E4K		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	4						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CATGAGATCGGAGAAATCCCT	0.736										HNSCC(72;0.22)			4	24					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920507	4920507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:4920507G>A	uc001qng.2	+	1	2166	c.1300G>A	c.(1300-1302)GGG>AGG	p.G434R		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	434						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CATGACTGTGGGGGGAAAGAT	0.577										HNSCC(72;0.22)			19	124					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021123	5021123	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:5021123G>A	uc001qnh.2	+	2	1684	c.579G>A	c.(577-579)AAG>AAA	p.K193K		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	193					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CCGAGCTGAAGGATGACAAGG	0.577													7	60					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5153930	5153930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:5153930G>A	uc001qni.2	+	1	846	c.617G>A	c.(616-618)GGG>GAG	p.G206E		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	206						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TACCAGCTGGGGGACGAGGCC	0.627													6	52					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6085342	6085342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6085342C>T	uc001qnn.1	-	43	7622	c.7372G>A	c.(7372-7374)GAT>AAT	p.D2458N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2458	VWFC 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	ATCACGGCATCCTCCATGTCG	0.627													11	108					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6125276	6125276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6125276C>T	uc001qnn.1	-	31	5684	c.5434G>A	c.(5434-5436)GCT>ACT	p.A1812T	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1812	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCGGCATCAGCTGCTGCATCC	0.527													4	55					0	0	1	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6443401	6443402	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6443401_6443402CC>TT	uc001qnu.2	-	2	329_330	c.48_49GG>AA	c.(46-51)CTGGAG>CTAAAG	p.E17K	TNFRSF1A_uc001qnt.2_5'UTR|TNFRSF1A_uc010sey.1_5'UTR|TNFRSF1A_uc010sez.1_Intron|TNFRSF1A_uc009zek.2_Missense_Mutation_p.E17K|TNFRSF1A_uc010sfa.1_Missense_Mutation_p.E17K	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	17					apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						ACCAACAGCTCCAGGAGCACCT	0.515													6	64					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6690903	6690903	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6690903G>A	uc001qpo.2	-	31	4757	c.4593C>T	c.(4591-4593)TCC>TCT	p.S1531S	CHD4_uc001qpn.2_Silent_p.S1524S|CHD4_uc001qpp.2_Silent_p.S1556S|uc001qpq.1_Intron|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1531					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ACCCTGGCTGGGACATCTTCT	0.552													7	163					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6753577	6753577	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6753577C>G	uc001qpu.1	-	5	718	c.670G>C	c.(670-672)GAG>CAG	p.E224Q	ACRBP_uc010sfg.1_Missense_Mutation_p.E191Q	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	224						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						tcctgttcctcttcttgctct	0.299													6	33					0	0	1	0	0
ING4	51147	broad.mit.edu	37	12	6760488	6760488	+	Splice_Site	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6760488A>G	uc001qpw.3	-	7	751	c.710_splice	c.e7+1	p.W237_splice	ING4_uc001qpv.3_Splice_Site_p.W236_splice|ING4_uc001qpy.3_Splice_Site_p.W233_splice|ING4_uc001qpx.3_Splice_Site_p.W234_splice|ING4_uc009zes.2_Splice_Site|ING4_uc009zet.2_Splice_Site_p.W213_splice|ING4_uc009zeu.2_Splice_Site|ING4_uc009zev.2_Splice_Site	NM_001127582	NP_001121054	Q9UNL4	ING4_HUMAN	inhibitor of growth family, member 4 isoform 9						apoptosis|cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell proliferation|negative regulation of growth|negative regulation of transcription, DNA-dependent|positive regulation of apoptosis	histone acetyltransferase complex	protein binding|transcription coactivator activity|zinc ion binding			central_nervous_system(3)|ovary(1)	4						CCTGCCACTTACCATTTCCCC	0.522													13	92					0	0	1	0	0
COPS7A	50813	broad.mit.edu	37	12	6837404	6837404	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6837404T>G	uc001qqj.2	+	4	493	c.254T>G	c.(253-255)CTT>CGT	p.L85R	COPS7A_uc009zex.2_RNA|COPS7A_uc001qqk.2_Missense_Mutation_p.L85R|COPS7A_uc001qql.2_RNA|COPS7A_uc001qqh.2_Missense_Mutation_p.L85R|COPS7A_uc001qqi.2_Missense_Mutation_p.L85R|COPS7A_uc001qqm.2_RNA|COPS7A_uc001qqn.3_Missense_Mutation_p.L85R|COPS7A_uc001qqo.2_Missense_Mutation_p.L85R	NM_001164094	NP_001157566	Q9UBW8	CSN7A_HUMAN	COP9 complex subunit 7a	85	PCI.				cullin deneddylation	cytoplasm|signalosome				ovary(1)	1						GCCCGGAATCTTCCTCCACTA	0.507													7	58					0	0	1	0	0
LAG3	3902	broad.mit.edu	37	12	6883975	6883975	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:6883975C>T	uc001qqt.3	+	4	1075	c.726C>T	c.(724-726)ATC>ATT	p.I242I	LAG3_uc001qqs.2_Silent_p.I242I|LAG3_uc001qqu.2_Silent_p.I72I	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	242	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane	antigen binding|MHC class II protein binding				0						GGGGCTGCATCCTCACCTACA	0.572													15	107					0	0	1	0	0
C1RL	51279	broad.mit.edu	37	12	7252524	7252524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7252524C>T	uc001qsn.2	-	4	606	c.589G>A	c.(589-591)GAG>AAG	p.E197K	C1RL_uc009zft.2_Missense_Mutation_p.E197K	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	197					complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						TAATAGGGCTCCTGGCAGTGG	0.612													6	32					0	0	1	0	0
RBP5	83758	broad.mit.edu	37	12	7276770	7276770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7276770C>T	uc001qsq.2	-	4	450	c.355G>A	c.(355-357)GAA>AAA	p.E119K		NM_031491	NP_113679	P82980	RET5_HUMAN	retinol binding protein 5, cellular	119						cytoplasm	retinal binding|retinol binding|transporter activity			ovary(1)	1					Vitamin A(DB00162)	GCAGTCAGTTCCTGGGGAGAG	0.577													6	67					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7522042	7522042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7522042C>T	uc001qsy.2	-	15	3976	c.3950G>A	c.(3949-3951)GGA>GAA	p.G1317E	CD163L1_uc010sge.1_Missense_Mutation_p.G1327E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1317	SRCR 12.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGACTCATTTCCTTTGCACCG	0.557													8	133					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7528303	7528303	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7528303G>A	uc001qsy.2	-	10	2705	c.2679C>T	c.(2677-2679)GTC>GTT	p.V893V	CD163L1_uc010sge.1_Silent_p.V903V	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	893	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CACGGGAACAGACAACTCCAA	0.453													9	108					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7559373	7559373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7559373C>T	uc001qsy.2	-	5	868	c.842G>A	c.(841-843)GGA>GAA	p.G281E	CD163L1_uc010sge.1_Missense_Mutation_p.G291E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	281	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CCCCCACCTTCCTTGGATTTT	0.478													5	80					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635323	7635323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7635323C>T	uc001qsz.3	-	14	3291	c.3163G>A	c.(3163-3165)GGG>AGG	p.G1055R	CD163_uc001qta.3_Missense_Mutation_p.G1055R|CD163_uc009zfw.2_Missense_Mutation_p.G1088R	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1055	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCAAGGATCCCGACTGCAATA	0.423													4	69					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635594	7635594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7635594G>A	uc001qsz.3	-	13	3223	c.3095C>T	c.(3094-3096)TCA>TTA	p.S1032L	CD163_uc001qta.3_Missense_Mutation_p.S1032L|CD163_uc009zfw.2_Missense_Mutation_p.S1065L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1032	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTTCTGCACTGAAATATCTGT	0.358													5	80					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7636081	7636081	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7636081C>T	uc001qsz.3	-	12	3098	c.2970G>A	c.(2968-2970)CCG>CCA	p.P990P	CD163_uc001qta.3_Silent_p.P990P|CD163_uc009zfw.2_Silent_p.P1023P	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	990	SRCR 9.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TGAGCCATATCGGTCCAGTCC	0.522													6	54					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7647890	7647890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7647890C>T	uc001qsz.3	-	6	1335	c.1207G>A	c.(1207-1209)GGA>AGA	p.G403R	CD163_uc001qta.3_Missense_Mutation_p.G403R|CD163_uc009zfw.2_Missense_Mutation_p.G403R	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	403	SRCR 4.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCTTTCAGTCCCCAGCCTCTG	0.502													10	91					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7649692	7649692	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7649692G>A	uc001qsz.3	-	5	944	c.816C>T	c.(814-816)GTC>GTT	p.V272V	CD163_uc001qta.3_Silent_p.V272V|CD163_uc009zfw.2_Silent_p.V272V	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	272	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AACATTCAGTGACTCCATCTA	0.473													6	129					0	0	1	0	0
DPPA3	359787	broad.mit.edu	37	12	7868018	7868018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7868018C>T	uc001qtf.2	+	2	400	c.322C>T	c.(322-324)CGT>TGT	p.R108C		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	108						cytoplasm|nucleus					0				Kidney(36;0.0887)		CGGCGGAGTTCGTACGGTATG	0.443													9	71					0	0	1	0	0
SLC2A14	144195	broad.mit.edu	37	12	7967025	7967025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7967025C>T	uc001qtk.2	-	16	2243	c.1450G>A	c.(1450-1452)GAT>AAT	p.D484N	SLC2A14_uc001qtl.2_Missense_Mutation_p.D461N|SLC2A14_uc001qtm.2_Missense_Mutation_p.D461N|SLC2A14_uc010sgg.1_Missense_Mutation_p.D375N|SLC2A14_uc001qtn.2_Missense_Mutation_p.D484N|SLC2A14_uc001qto.2_Missense_Mutation_p.D119N|SLC2A14_uc010sgh.1_Missense_Mutation_p.D499N	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	484	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		CGTGTGATATCCTCAAAAGTC	0.517													5	73					0	0	1	0	0
SLC2A14	144195	broad.mit.edu	37	12	7981301	7981301	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:7981301C>T	uc001qtk.2	-	11	1537	c.744G>A	c.(742-744)CGG>CGA	p.R248R	SLC2A14_uc001qtl.2_Silent_p.R225R|SLC2A14_uc001qtm.2_Silent_p.R225R|SLC2A14_uc010sgg.1_Silent_p.R139R|SLC2A14_uc001qtn.2_Silent_p.R248R|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Silent_p.R263R	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	248	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		GATACTCACTCCGCGTAGCAT	0.438													7	74					0	0	1	0	0
SLC2A3	6515	broad.mit.edu	37	12	8074122	8074122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:8074122C>T	uc001qtr.2	-	10	1640	c.1378G>A	c.(1378-1380)GAT>AAT	p.D460N		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	460	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		CGTGTGATATCCTCAAAAGTC	0.502													7	160					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9348939	9348939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:9348939G>A	uc001qvl.2	-	10	1108	c.1079C>T	c.(1078-1080)CCC>CTC	p.P360L	PZP_uc009zgl.2_Missense_Mutation_p.P229L	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGCAAAAAAGGGGATTCCTTG	0.418													8	73					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10464126	10464126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:10464126C>T	uc001qxw.3	+	5	424	c.227C>T	c.(226-228)TCC>TTC	p.S76F	KLRD1_uc001qxx.3_Missense_Mutation_p.S76F|KLRD1_uc001qxy.3_Missense_Mutation_p.S45F|KLRD1_uc009zhh.2_Missense_Mutation_p.S55F|KLRD1_uc009zhi.2_Missense_Mutation_p.S76F|KLRD1_uc001qxz.3_Missense_Mutation_p.S76F	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	76	Extracellular (Potential).|C-type lectin.				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						TACTTCATTTCCAGTGAACAG	0.448													11	91					0	0	1	0	0
KLRC4	8302	broad.mit.edu	37	12	10562080	10562080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:10562080G>A	uc001qye.2	-	1	277	c.95C>T	c.(94-96)TCA>TTA	p.S32L	KLRK1_uc001qyc.2_5'Flank|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_Intron	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	32	Cytoplasmic (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						TTTGGTTCCTGAAATGGAGAT	0.403													16	161					0	0	1	0	0
KLRC3	3823	broad.mit.edu	37	12	10569321	10569321	+	Missense_Mutation	SNP	G	A	A	rs138941727		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:10569321G>A	uc001qyf.2	-	5	577	c.532C>T	c.(532-534)CGT>TGT	p.R178C	KLRC3_uc001qyh.2_Missense_Mutation_p.R178C|KLRC3_uc001qyi.1_Missense_Mutation_p.R178C	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	178	C-type lectin.|Extracellular (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity	p.R178C(1)		ovary(2)|skin(1)	3						CTGCTGTTACGAAACACACCA	0.294													6	57					0	0	1	0	0
STYK1	55359	broad.mit.edu	37	12	10774548	10774548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:10774548G>A	uc001qys.2	-	10	1512	c.991C>T	c.(991-993)CCT>TCT	p.P331S		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	331	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CTGGTAGGAGGGACTTCAGGA	0.418										HNSCC(73;0.22)			8	102					0	0	1	0	0
STYK1	55359	broad.mit.edu	37	12	10777287	10777287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:10777287G>A	uc001qys.2	-	8	1410	c.889C>T	c.(889-891)CGG>TGG	p.R297W		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	297	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						AGGAGAAGCCGTTCTGGGGCA	0.493										HNSCC(73;0.22)			22	152					0	0	1	0	0
DUSP16	80824	broad.mit.edu	37	12	12630651	12630651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:12630651C>T	uc001rao.1	-	7	1746	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.E224K	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	372					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		GGGCTGTCCTCTAACAGCGAC	0.517													7	41					0	0	1	0	0
DUSP16	80824	broad.mit.edu	37	12	12633225	12633225	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:12633225G>A	uc001rao.1	-	6	1379	c.747C>T	c.(745-747)TCC>TCT	p.S249S	DUSP16_uc001ran.1_Silent_p.S101S	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	249	Tyrosine-protein phosphatase.				inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		TGGCGGAGCGGGAGATCCCAG	0.448													12	122					0	0	1	0	0
HEBP1	50865	broad.mit.edu	37	12	13128335	13128335	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:13128335G>A	uc001rbd.2	-	4	650	c.477C>T	c.(475-477)GCC>GCT	p.A159A		NM_015987	NP_057071	Q9NRV9	HEBP1_HUMAN	heme binding protein 1	159					circadian rhythm	extracellular region				breast(1)	1		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.153)		CCCGGTAGGTGGCTGTGCCCT	0.592													9	81					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717043	13717043	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:13717043G>A	uc001rbt.2	-	13	3308	c.3129C>T	c.(3127-3129)TCC>TCT	p.S1043S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1043	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGCTCTTGAAGGAGAATTTGC	0.582													4	37					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906683	13906683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:13906683C>T	uc001rbt.2	-	3	757	c.578G>A	c.(577-579)AGC>AAC	p.S193N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	193	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCCACAAAGCTATTCTCAAT	0.473													5	71					0	0	1	0	0
PLBD1	79887	broad.mit.edu	37	12	14689560	14689560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:14689560C>T	uc001rcc.1	-	5	804	c.643G>A	c.(643-645)GGC>AGC	p.G215S		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	215					lipid catabolic process	extracellular region	hydrolase activity				0						TTTAGGCTGCCGTTTTTTGTG	0.448													11	92					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14778729	14778729	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:14778729C>T	uc001rcd.2	-	21	2507	c.2370G>A	c.(2368-2370)AGG>AGA	p.R790R		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	790	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CAGCCCTGTCCCTCTCTGCCT	0.453													14	114					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15734686	15734686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:15734686C>T	uc001rcv.1	+	23	3380	c.3206C>T	c.(3205-3207)TCA>TTA	p.S1069L	PTPRO_uc001rcw.1_Missense_Mutation_p.S1041L|PTPRO_uc001rcx.1_Missense_Mutation_p.S258L|PTPRO_uc001rcy.1_Missense_Mutation_p.S258L|PTPRO_uc001rcz.1_Missense_Mutation_p.S230L|PTPRO_uc001rda.1_Missense_Mutation_p.S230L	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1069	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GAGATGATTTCAGAGGAAGAG	0.468													7	52					0	0	1	0	0
EPS8	2059	broad.mit.edu	37	12	15777212	15777212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:15777212G>A	uc009zif.2	-	19	2268	c.2174C>T	c.(2173-2175)TCC>TTC	p.S725F	EPS8_uc001rdb.2_Missense_Mutation_p.S725F|EPS8_uc009zig.2_Missense_Mutation_p.S465F|EPS8_uc010shv.1_Missense_Mutation_p.S465F	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	725					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		CTCTGGTGTGGAGTCGTAAGT	0.468													7	77					0	0	1	0	0
MGST1	4257	broad.mit.edu	37	12	16507210	16507210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:16507210G>A	uc001rdf.2	+	2	89	c.24G>A	c.(22-24)ATG>ATA	p.M8I	MGST1_uc001rdg.2_Missense_Mutation_p.M8I|MGST1_uc009zih.1_Intron|MGST1_uc001rdh.2_Missense_Mutation_p.M8I|MGST1_uc001rdi.2_Missense_Mutation_p.M8I	NM_145792	NP_665735	P10620	MGST1_HUMAN	microsomal glutathione S-transferase 1	8	Lumenal (By similarity).				protein homotrimerization|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	glutathione transferase activity				0		Hepatocellular(102;0.121)			Glutathione(DB00143)	CCCAGGTAATGGATGATGAAG	0.318													5	30					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18242180	18242180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:18242180G>A	uc001rdq.2	-	2	232	c.38C>T	c.(37-39)TCT>TTT	p.S13F	RERGL_uc001rdr.2_Intron	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	13	Small GTPase-like.|GTP (By similarity).				signal transduction	membrane	GTP binding|GTPase activity				0						AACAGAAACAGATTTCTCATT	0.333													3	21					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891299	18891299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:18891299G>A	uc001rdy.2	+	1	255	c.97G>A	c.(97-99)GAT>AAT	p.D33N	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	33					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				TGCCTTTGATGATCTCTGTCT	0.458													3	43					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891372	18891372	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:18891372A>G	uc001rdy.2	+	1	328	c.170A>G	c.(169-171)CAA>CGA	p.Q57R	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	57					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				CAACACTGCCAAAAATATTCT	0.438													10	56					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891842	18891842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:18891842G>A	uc001rdy.2	+	1	798	c.640G>A	c.(640-642)GAA>AAA	p.E214K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	214					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				AGAAAGCTTGGAAATAGTTAA	0.398													7	34					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20522961	20522961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:20522961G>A	uc001reh.1	+	1	765	c.743G>A	c.(742-744)GGG>GAG	p.G248E		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	248	Helical; (Potential).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GGCGTGCTGGGGATCCTCTTG	0.607													5	57					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20903668	20903669	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:20903668_20903669GG>AA	uc001rej.3	+	15	2213_2214	c.1858_1859GG>AA	c.(1858-1860)GGA>AAA	p.G620K	SLCO1C1_uc010sii.1_Missense_Mutation_p.G620K|SLCO1C1_uc010sij.1_Missense_Mutation_p.G571K|SLCO1C1_uc009zip.2_Missense_Mutation_p.G454K|SLCO1C1_uc001rei.2_Missense_Mutation_p.G620K|SLCO1C1_uc010sik.1_Missense_Mutation_p.G502K	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	620	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CCTCAAATGGGGATTTAAAAGA	0.376													9	80					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032384	21032384	+	Missense_Mutation	SNP	C	T	T	rs145877520		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:21032384C>T	uc001rek.2	+	10	1276	c.1150C>T	c.(1150-1152)CCT>TCT	p.P384S	SLCO1B3_uc001rel.2_Missense_Mutation_p.P384S|SLCO1B3_uc010sil.1_Missense_Mutation_p.P384S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.P209S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	384	Helical; Name=8; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CATAACCATTCCTACGGTTGC	0.269													4	27					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036450	21036450	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:21036450G>A	uc001rek.2	+	12	1722	c.1596G>A	c.(1594-1596)AGG>AGA	p.R532R	SLCO1B3_uc001rel.2_Silent_p.R532R|SLCO1B3_uc010sil.1_Silent_p.R532R|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.R357R	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	532	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTTGTACAAGGAAATTTTTCA	0.373													6	61					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21457393	21457393	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:21457393A>G	uc001rer.2	-	5	808	c.557T>C	c.(556-558)TTT>TCT	p.F186S	SLCO1A2_uc001res.2_Missense_Mutation_p.F186S|SLCO1A2_uc010siq.1_Missense_Mutation_p.F54S|SLCO1A2_uc010sio.1_Missense_Mutation_p.F54S|SLCO1A2_uc010sip.1_Missense_Mutation_p.F54S|SLCO1A2_uc001ret.2_Missense_Mutation_p.F184S|SLCO1A2_uc001reu.2_Missense_Mutation_p.F166S	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	186	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AAATTTGGCAAAATCTTCTAT	0.313													3	52					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22012526	22012526	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:22012526G>A	uc001rfi.1	-	20	2519	c.2499C>T	c.(2497-2499)GTC>GTT	p.V833V	ABCC9_uc001rfh.2_Silent_p.V833V|ABCC9_uc001rfj.1_Silent_p.V797V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	833	Cytoplasmic (Potential).|ABC transporter 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTACCAAAAAGACAATGTTGG	0.428													9	115					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25249938	25249938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:25249938G>A	uc001rgh.2	+	14	1735	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	LRMP_uc010sja.1_Missense_Mutation_p.R234Q|LRMP_uc010sjb.1_Missense_Mutation_p.R181Q|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.R234Q|LRMP_uc010sjd.1_Missense_Mutation_p.R181Q	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	290	Potential.|Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					TGTGCAGCACGAGTGGCCAGT	0.413													10	65					0	0	1	0	0
RASSF8	11228	broad.mit.edu	37	12	26217629	26217629	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:26217629T>C	uc001rgx.2	+	3	523	c.302T>C	c.(301-303)TTA>TCA	p.L101S	RASSF8_uc001rgy.2_Missense_Mutation_p.L101S|RASSF8_uc001rgz.2_Missense_Mutation_p.L101S|RASSF8_uc009zjd.1_Missense_Mutation_p.L101S|RASSF8_uc009zje.1_Missense_Mutation_p.L101S	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	101					signal transduction						0	Colorectal(261;0.0847)					GAAAGAACTTTATACAGGCAG	0.478													11	99					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26731734	26731734	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:26731734T>C	uc001rhg.2	-	34	4959	c.4542A>G	c.(4540-4542)CAA>CAG	p.Q1514Q		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1514	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TGAAGGCAGATTGCAGTAGCT	0.433													5	52					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26878656	26878656	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:26878656T>A	uc001rhg.2	-	3	623	c.206A>T	c.(205-207)CAG>CTG	p.Q69L	ITPR2_uc001rhh.1_Missense_Mutation_p.Q7L|ITPR2_uc001rhi.1_Missense_Mutation_p.Q69L	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	69	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					ATATTGCTTCTGGGCAGAATA	0.438													3	38					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33559749	33559749	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:33559749C>T	uc001rll.1	-	3	1349	c.1052G>A	c.(1051-1053)TGG>TAG	p.W351*	SYT10_uc009zju.1_Nonsense_Mutation_p.W161*	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	351	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					AATATCTTTCCATACTGTGGC	0.338													6	57					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33579230	33579230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:33579230C>T	uc001rll.1	-	2	649	c.352G>A	c.(352-354)GAA>AAA	p.E118K	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	118	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTTCATTTTCCTTAATTTCT	0.408													9	69					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41374853	41374853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:41374853G>A	uc001rmm.1	+	16	2060	c.1947G>A	c.(1945-1947)TGG>TGA	p.W649*	CNTN1_uc001rmn.1_Nonsense_Mutation_p.W638*	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	649	Fibronectin type-III 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CAGATGACTGGAAAGATGCAA	0.363													5	74					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43769304	43769304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:43769304G>A	uc010skx.1	-	36	5324	c.5324C>T	c.(5323-5325)CCA>CTA	p.P1775L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1775	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACATTGATATGGATTTTTTAG	0.348													12	117					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43833491	43833491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:43833491C>T	uc010skx.1	-	18	2527	c.2527G>A	c.(2527-2529)GAG>AAG	p.E843K	ADAMTS20_uc001rno.1_5'UTR|ADAMTS20_uc001rnp.1_5'UTR	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	843	Spacer.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TCACTCCTCTCTTCCAAAGGG	0.393													6	55					0	0	1	0	0
PUS7L	83448	broad.mit.edu	37	12	44142400	44142400	+	Missense_Mutation	SNP	C	T	T	rs145814117	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:44142400C>T	uc001rnq.3	-	3	1412	c.923G>A	c.(922-924)CGA>CAA	p.R308Q	PUS7L_uc001rnr.3_Missense_Mutation_p.R308Q|PUS7L_uc001rns.3_Missense_Mutation_p.R308Q|PUS7L_uc009zkb.2_5'UTR	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	308					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		GTTTTCCTTTCGTAGGGTAAA	0.318													3	23					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457736	45457736	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:45457736C>T	uc001rol.2	-	1		c.1459G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CAATGTGTCCCTGTTGGCCTG	0.463													6	74					0	0	1	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320976	46320976	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:46320976C>T	uc001rox.2	-	11	2795	c.2508G>A	c.(2506-2508)AAG>AAA	p.K836K	SFRS2IP_uc001row.2_Silent_p.K521K|SFRS2IP_uc001roy.1_Silent_p.K910K	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	836					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CTGACTCATTCTTAGGAGATG	0.483													9	89					0	0	1	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320978	46320978	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:46320978T>A	uc001rox.2	-	11	2793	c.2506A>T	c.(2506-2508)AAG>TAG	p.K836*	SFRS2IP_uc001row.2_Nonsense_Mutation_p.K521*|SFRS2IP_uc001roy.1_Nonsense_Mutation_p.K910*	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	836					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GACTCATTCTTAGGAGATGGT	0.478													8	90					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47172397	47172397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:47172397G>A	uc001rpi.2	-	11	1279	c.880C>T	c.(880-882)CCT>TCT	p.P294S	SLC38A4_uc001rpj.2_Missense_Mutation_p.P294S	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	294	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					AGCCCTGCAGGATTGCGGTGG	0.453													5	63					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47181798	47181798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:47181798G>A	uc001rpi.2	-	5	626	c.227C>T	c.(226-228)TCC>TTC	p.S76F	SLC38A4_uc001rpj.2_Missense_Mutation_p.S76F|SLC38A4_uc009zkl.2_Missense_Mutation_p.S76F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	76	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CATTCCAAAGGAAGTGGTTCC	0.433													3	33					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471806	47471806	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:47471806T>C	uc001rpm.2	-	3	1635	c.980A>G	c.(979-981)GAT>GGT	p.D327G	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.D327G|AMIGO2_uc001rpl.2_Missense_Mutation_p.D327G	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	327	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CAGTCTGTTATCTGGACCCAC	0.463													11	210					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629015	47629015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:47629015G>A	uc001rpn.2	+	4	900	c.169G>A	c.(169-171)GAA>AAA	p.E57K	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Missense_Mutation_p.E57K	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	57							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GCTGAACTTCGAACAAGATGA	0.607													6	46					0	0	1	0	0
ENDOU	8909	broad.mit.edu	37	12	48107073	48107073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:48107073C>T	uc001rpu.1	-	7	1004	c.850G>A	c.(850-852)GAA>AAA	p.E284K	ENDOU_uc010sll.1_Missense_Mutation_p.E50K|ENDOU_uc001rpt.1_Missense_Mutation_p.E243K|ENDOU_uc010slm.1_Missense_Mutation_p.E221K	NM_006025	NP_006016	P21128	ENDOU_HUMAN	placental protein 11 precursor	284				E->Q: Abolishes endoribonuclease activity and increases RNA-binding activity.	female pregnancy|immune response|proteolysis	cytoplasm|extracellular space|plasma membrane	endoribonuclease activity|growth factor activity|manganese ion binding|polysaccharide binding|RNA binding|scavenger receptor activity|serine-type peptidase activity			ovary(2)|pancreas(1)	3						AAGACATGTTCAAAGCCACTC	0.502													12	149					0	0	1	0	0
LALBA	3906	broad.mit.edu	37	12	48963707	48963707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:48963707C>T	uc001rrt.2	-	1	123	c.97G>A	c.(97-99)GAC>AAC	p.D33N		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	33					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						CCATCTATGTCTTTCAGCAGC	0.502													5	37					0	0	1	0	0
CCNT1	904	broad.mit.edu	37	12	49087125	49087125	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:49087125G>A	uc001rse.1	-	9	2195	c.1872C>T	c.(1870-1872)TCC>TCT	p.S624S	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Silent_p.S339S	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	624	Ser-rich.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						GCTGTGAAAAGGAAAGGCCAC	0.488													3	54					0	0	1	0	0
DDN	23109	broad.mit.edu	37	12	49390996	49390996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:49390996C>T	uc001rsv.1	-	2	1681	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	555	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						AGGTTTACTTCGGGGGCCGGG	0.617													3	54					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445206	49445206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:49445206G>A	uc001rta.3	-	10	2260	c.2260C>T	c.(2260-2262)CCC>TCC	p.P754S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	754	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCAGGCCGGGGGGACAGGTGC	0.692			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			3	39					0	0	1	0	0
BCDIN3D	144233	broad.mit.edu	37	12	50232487	50232487	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:50232487G>A	uc001rvh.2	-	2	588	c.546C>T	c.(544-546)TTC>TTT	p.F182F	LOC100286844_uc010smm.1_Intron|LOC100286844_uc001rvg.2_RNA|LOC100286844_uc010smn.1_RNA	NM_181708	NP_859059	Q7Z5W3	BN3D2_HUMAN	BCDIN3 domain containing	182	Bin3-type SAM.						methyltransferase activity			ovary(1)	1						GATGGGCCAGGAACTCCCATA	0.522											OREG0021805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	79					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344791	50344791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:50344791G>A	uc001rvn.2	+	1	268	c.178G>A	c.(178-180)GGC>AGC	p.G60S		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	60	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						ACAGGCTCTGGGCCACATAAG	0.647													8	89					0	0	1	0	0
RACGAP1	29127	broad.mit.edu	37	12	50392941	50392941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:50392941C>T	uc001rvt.2	-	11	1172	c.862G>A	c.(862-864)GAC>AAC	p.D288N	RACGAP1_uc009zlm.1_Missense_Mutation_p.D288N|RACGAP1_uc001rvs.2_Missense_Mutation_p.D288N|RACGAP1_uc001rvu.2_Missense_Mutation_p.D288N	NM_013277	NP_037409	Q9H0H5	RGAP1_HUMAN	Rac GTPase activating protein 1	288	Phorbol-ester/DAG-type.				blood coagulation|cytokinesis, actomyosin contractile ring assembly|cytokinesis, initiation of separation|embryo development|microtubule-based movement|neuroblast proliferation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|spermatogenesis|sulfate transport	acrosomal vesicle|cytosol|microtubule|midbody|nucleus|spindle	alpha-tubulin binding|beta-tubulin binding|gamma-tubulin binding|GTPase activator activity|metal ion binding			kidney(1)	1						GAAACAAAGTCATGCAGGCGC	0.413													11	59					0	0	1	0	0
CELA1	1990	broad.mit.edu	37	12	51733669	51733669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:51733669C>T	uc001ryi.1	-	6	625	c.584G>A	c.(583-585)GGA>GAA	p.G195E		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	195	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						AACTCCATCTCCACCAGCACA	0.612													8	66					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51752041	51752041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:51752041G>A	uc001ryk.2	-	8	1598	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.S458F|GALNT6_uc001ryj.1_Missense_Mutation_p.S23F	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	458	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GTCACCGAAGGATTTCTGTCA	0.358													16	116					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52200593	52200593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52200593G>A	uc001ryw.2	+	27	5501	c.5323G>A	c.(5323-5325)GAA>AAA	p.E1775K		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1775	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGCCACAGAGGAAAGTGCAGA	0.463													14	175					0	0	1	0	0
ACVRL1	94	broad.mit.edu	37	12	52312854	52312854	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52312854G>A	uc001rzj.2	+	9	1615	c.1332G>A	c.(1330-1332)GTG>GTA	p.V444V	ACVRL1_uc001rzk.2_Silent_p.V444V|ACVRL1_uc010snm.1_Silent_p.V270V	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	444	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	TGGTGTGTGTGGATCAGCAGA	0.577									Hereditary_Hemorrhagic_Telangiectasia				6	92					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52695783	52695783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52695783C>T	uc010snq.1	+	2	216	c.83C>T	c.(82-84)ACC>ATC	p.T28I	KRT86_uc009zmg.2_Missense_Mutation_p.T28I|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.T28I	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	28	Head.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGCTGCATCACCGCCGCCCCC	0.697													4	39					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699473	52699473	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52699473C>T	uc010snq.1	+	7	1060	c.927C>T	c.(925-927)ATC>ATT	p.I309I	KRT86_uc009zmg.2_Silent_p.I309I|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.I309I	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	309	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCACGGTGATCAGGCACGGGG	0.587													6	71					0	0	1	0	0
KRT83	3889	broad.mit.edu	37	12	52710730	52710730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52710730C>T	uc001saf.2	-	5	891	c.828G>A	c.(826-828)ATG>ATA	p.M276I		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	276	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CGATGCAGTCCATGTTCAGGT	0.582													6	193					0	0	1	0	0
KRT83	3889	broad.mit.edu	37	12	52713040	52713040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52713040C>T	uc001saf.2	-	2	556	c.493G>A	c.(493-495)GAG>AAG	p.E165K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	165	Rod.|Coil 1B.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCAGAGTCTCGATGTAGCCA	0.602													18	178					0	0	1	0	0
KRT84	3890	broad.mit.edu	37	12	52777579	52777579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52777579G>A	uc001sah.1	-	2	598	c.550C>T	c.(550-552)CGG>TGG	p.R184W		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	184	Rod.|Coil 1A.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTAGGAACCGAACCTAAATC	0.493													4	49					0	0	1	0	0
KRT82	3888	broad.mit.edu	37	12	52797502	52797502	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52797502C>T	uc001sai.1	-	2	718	c.603G>A	c.(601-603)CTG>CTA	p.L201L		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	201	Coil 1B.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		tgtagccctccagtgcAGCCT	0.303													15	126					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52882264	52882264	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52882264C>T	uc001sam.2	-	7	1481	c.1272G>A	c.(1270-1272)AAG>AAA	p.K424K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	424	Rod.|Coil 2.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCAGCTTGTTCTTGGCATCCT	0.587													10	168					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52883755	52883755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52883755C>T	uc001sam.2	-	6	1384	c.1175G>A	c.(1174-1176)AGA>AAA	p.R392K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	392	Rod.|Coil 2.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GATCTCAGATCTCAGCCTCTG	0.532													7	51					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52886525	52886525	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52886525G>A	uc001sam.2	-	1	657	c.448C>T	c.(448-450)CTG>TTG	p.L150L		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	150	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCGATTTGCAGGTTGAGGGGA	0.602													15	167					0	0	1	0	0
KRT5	3852	broad.mit.edu	37	12	52910459	52910459	+	Silent	SNP	G	A	A	rs60062350		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52910459G>A	uc001san.2	-	7	1564	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	KRT5_uc009zmh.2_Silent_p.I467I	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	467	Rod.|Coil 2.		I -> T (in DM-EBS).		epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGTAAGTGGCGATCTCCACGT	0.587													21	271					0	0	1	0	0
KRT72	140807	broad.mit.edu	37	12	52992707	52992707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52992707C>T	uc001sar.2	-	2	702	c.616G>A	c.(616-618)GAT>AAT	p.D206N	KRT72_uc001saq.2_Missense_Mutation_p.D206N|KRT72_uc010sns.1_Missense_Mutation_p.D206N|KRT72_uc010snt.1_Missense_Mutation_p.D18N	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	206	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TCCACCAAATCCTGCATGTTC	0.517													18	303					0	0	1	0	0
KRT72	140807	broad.mit.edu	37	12	52992771	52992771	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52992771C>T	uc001sar.2	-	2	638	c.552G>A	c.(550-552)CAG>CAA	p.Q184Q	KRT72_uc001saq.2_Silent_p.Q184Q|KRT72_uc010sns.1_Silent_p.Q184Q|KRT72_uc010snt.1_5'UTR	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	184	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CCAGCTGCTTCTGCAGGTTGC	0.542													14	235					0	0	1	0	0
KRT72	140807	broad.mit.edu	37	12	52994894	52994894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:52994894C>T	uc001sar.2	-	1	429	c.343G>A	c.(343-345)GAC>AAC	p.D115N	KRT72_uc001saq.2_Missense_Mutation_p.D115N|KRT72_uc010sns.1_Missense_Mutation_p.D115N|KRT72_uc010snt.1_5'UTR	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	115	Head.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		ATCTCGGGGTCCATCTCCACG	0.652													5	129					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53008368	53008368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53008368C>T	uc001sas.2	-	4	849	c.814G>A	c.(814-816)GAG>AAG	p.E272K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	272	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTTACCCCCTCGTACAGACAC	0.512													6	65					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53011862	53011862	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53011862C>T	uc001sas.2	-	1	482	c.447G>A	c.(445-447)AAG>AAA	p.K149K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	149	Coil 1A.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		AAAGACCCACCTTGTCAATGA	0.527													10	136					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53044219	53044219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53044219C>T	uc001sat.2	-	2	737	c.704G>A	c.(703-705)AGC>AAC	p.S235N		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	235	Coil 1B.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TCTCTTGAGGCTGTCGATATA	0.473													17	231					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53165697	53165697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53165697C>T	uc001sax.2	-	6	1275	c.1221G>A	c.(1219-1221)ATG>ATA	p.M407I		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	407	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GCCTCTGGATCATCCTGTTGA	0.557													10	158					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53185151	53185151	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53185151C>T	uc001say.2	-	7	1440	c.1374G>A	c.(1372-1374)AAG>AAA	p.K458K		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	458	Rod.|Coil 2.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CATTGGCATCCTTGAGGGCCA	0.592													10	114					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53185177	53185177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53185177C>T	uc001say.2	-	7	1414	c.1348G>A	c.(1348-1350)GAG>AAG	p.E450K		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	450	Rod.|Coil 2.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CCATGCTGCTCGGCCTCGGCA	0.612													8	99					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53186064	53186064	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53186064G>A	uc001say.2	-	5	1213	c.1147C>T	c.(1147-1149)CAG>TAG	p.Q383*		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	383	Rod.|Coil 2.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TTGCTTCTCTGAGCGATATCC	0.537													6	37					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53203218	53203218	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53203218C>A	uc001saz.2	-	4	1276	c.1005G>T	c.(1003-1005)AAG>AAT	p.K335N		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	261						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GACTGTCCACCTTGGCCTCCA	0.547													6	168					0.000157383	0.000158323	1	1	0
KRT78	196374	broad.mit.edu	37	12	53240001	53240001	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53240001A>T	uc001sbc.1	-	4	800	c.736T>A	c.(736-738)TTG>ATG	p.L246M		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	246	Coil 1B.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						AGATGCTTCAAGAAGTAGAGG	0.547													4	64					0	0	1	0	0
KRT18	3875	broad.mit.edu	37	12	53345370	53345370	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53345370C>A	uc001sbe.2	+	5	832	c.763C>A	c.(763-765)CAA>AAA	p.Q255K	KRT18_uc009zmn.1_Missense_Mutation_p.Q255K|KRT18_uc001sbf.1_Missense_Mutation_p.Q82K|KRT18_uc001sbg.2_Missense_Mutation_p.Q255K|KRT18_uc009zmo.2_Missense_Mutation_p.Q255K|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	255	Interaction with DNAJB6.|Coil 2.|Rod.|Necessary for interaction with PNN.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						CATCCGGGCCCAATATGACGA	0.587													3	52					1	1	1	1	0
EIF4B	1975	broad.mit.edu	37	12	53431199	53431199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53431199G>A	uc001sbh.3	+	11	1519	c.1313G>A	c.(1312-1314)CGA>CAA	p.R438Q	EIF4B_uc010snu.1_Missense_Mutation_p.R443Q|EIF4B_uc010snv.1_Missense_Mutation_p.R399Q|EIF4B_uc001sbi.2_Missense_Mutation_p.R190Q	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	438					insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						ACAGATGCACGAAGGAGAGAG	0.448													5	22					0	0	1	0	0
PCBP2	5094	broad.mit.edu	37	12	53865470	53865470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53865470C>T	uc001sdl.3	+	14	1290	c.940C>T	c.(940-942)CGT>TGT	p.R314C	PCBP2_uc001sdc.3_Missense_Mutation_p.R315C|PCBP2_uc001sdb.3_Missense_Mutation_p.R311C|PCBP2_uc001sde.3_Missense_Mutation_p.R310C|PCBP2_uc001sdi.3_Missense_Mutation_p.R284C|PCBP2_uc001sdd.3_Missense_Mutation_p.R280C|PCBP2_uc001sdf.3_Missense_Mutation_p.R267C|PCBP2_uc009zna.2_Missense_Mutation_p.R272C|PCBP2_uc010soi.1_Missense_Mutation_p.R52C|PCBP2_uc001sdj.3_Missense_Mutation_p.R65C|PCBP2_uc010soj.1_Missense_Mutation_p.R64C|PCBP2_uc001sdk.3_Missense_Mutation_p.R87C	NM_001128911	NP_001122383	Q15366	PCBP2_HUMAN	poly(rC) binding protein 2 isoform d	314	KH 3.				innate immune response|negative regulation of defense response to virus|negative regulation of type I interferon production|nuclear mRNA splicing, via spliceosome|proteasomal ubiquitin-dependent protein catabolic process|response to virus	cytosol|nucleoplasm|ribonucleoprotein complex	DNA binding|RNA binding|ubiquitin protein ligase binding				0						CAATGAGATCCGTCAGATGTC	0.498													4	35					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54798243	54798243	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:54798243G>A	uc001sga.2	-	14	1502	c.1434C>T	c.(1432-1434)TCC>TCT	p.S478S		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	478	Extracellular (Potential).|FG-GAP 7.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CCACACCAAAGGACCCCACAA	0.493											OREG0021554	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	445					0	0	1	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356583	55356583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55356583C>T	uc001sgn.3	-	9	1209	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	KIAA0748_uc001sgl.3_Missense_Mutation_p.E229K|KIAA0748_uc001sgm.3_Missense_Mutation_p.E114K|KIAA0748_uc010spb.1_Missense_Mutation_p.E114K|KIAA0748_uc010spc.1_Missense_Mutation_p.E229K|KIAA0748_uc010spd.1_Missense_Mutation_p.E367K|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	367										ovary(1)|central_nervous_system(1)	2						TGCTGTGTTTCCTCTTCACAG	0.517													4	37					0	0	1	0	0
OR9K2	441639	broad.mit.edu	37	12	55523681	55523681	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55523681G>A	uc010spe.1	+	1	129	c.129G>A	c.(127-129)AGG>AGA	p.R43R		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	43	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CAGGCTTCAGGGTACGCCCAG	0.448													6	74					0	0	1	0	0
OR9K2	441639	broad.mit.edu	37	12	55523969	55523969	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55523969C>T	uc010spe.1	+	1	417	c.417C>T	c.(415-417)CTC>CTT	p.L139L		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	139	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						AGGGATTTCTCCTGGCGGCCA	0.498													4	60					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55714957	55714957	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55714957T>C	uc010spi.1	+	1	574	c.574T>C	c.(574-576)TTC>CTC	p.F192L		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						AGACACAAAATTCTTAGAGGT	0.338													5	43					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55715217	55715217	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55715217A>G	uc010spi.1	+	1	834	c.834A>G	c.(832-834)TCA>TCG	p.S278S		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TAAACACCTCAGTAGCCCCCA	0.413													8	124					0	0	1	0	0
OR6C75	390323	broad.mit.edu	37	12	55759103	55759103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55759103C>T	uc010spk.1	+	1	209	c.209C>T	c.(208-210)TCA>TTA	p.S70L		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						CTGGAAATTTCATTCACGTCT	0.438													4	74					0	0	1	0	0
OR6C65	403282	broad.mit.edu	37	12	55794908	55794908	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55794908T>A	uc010spl.1	+	1	596	c.596T>A	c.(595-597)TTG>TAG	p.L199*		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGGCATTTTTGCTAGCAGTA	0.438													16	224					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846399	55846399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55846399G>A	uc001sgz.1	+	1	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGTCATCATGAACAACAGGG	0.453													8	75					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846720	55846720	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55846720C>T	uc001sgz.1	+	1	723	c.723C>T	c.(721-723)TCC>TCT	p.S241S		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CCTGTTCATCCCACATGATTG	0.418													7	56					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846840	55846840	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55846840C>T	uc001sgz.1	+	1	843	c.843C>T	c.(841-843)CCC>CCT	p.P281P		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CTGTCGCACCCTTGTTGAACC	0.413													5	44					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945401	55945401	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55945401C>T	uc010spp.1	+	1	391	c.391C>T	c.(391-393)CTG>TTG	p.L131L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTGCATTACCTGACTATTAT	0.453													6	125					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945573	55945573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:55945573C>T	uc010spp.1	+	1	563	c.563C>T	c.(562-564)TCA>TTA	p.S188L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTGCCTGCTCAGACACAAGC	0.468													5	78					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56030722	56030722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:56030722G>A	uc010spq.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CTCCTTCTGGGATTCTCTGAC	0.527													13	142					0	0	1	0	0
RDH5	5959	broad.mit.edu	37	12	56115531	56115531	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:56115531G>A	uc001shk.2	+	3	552	c.369G>A	c.(367-369)TGG>TGA	p.W123*	BLOC1S1_uc001shj.3_3'UTR|RDH5_uc010spt.1_Nonsense_Mutation_p.W123*|RDH5_uc010spu.1_Nonsense_Mutation_p.W26*|RDH5_uc001shl.2_Nonsense_Mutation_p.W123*	NM_002905	NP_002896	Q92781	RDH1_HUMAN	retinol dehydrogenase 5 (11-cis and 9-cis)	123					response to stimulus|visual perception	membrane	binding|retinol dehydrogenase activity			ovary(1)	1					NADH(DB00157)|Vitamin A(DB00162)	CCACACCATGGCTGACCCGGG	0.597													6	80					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56815553	56815553	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:56815553A>G	uc001slf.2	-	22	2851	c.2683T>C	c.(2683-2685)TTG>CTG	p.L895L		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	895					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TGCAGCTCCAACTCCTGATCC	0.507													14	155					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57423538	57423538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:57423538G>A	uc001smw.3	-	25	2953	c.2710C>T	c.(2710-2712)CGT>TGT	p.R904C	MYO1A_uc010sqz.1_Missense_Mutation_p.R742C|MYO1A_uc009zpd.2_Missense_Mutation_p.R904C	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	904					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CCATTGCCACGATTGACCTTC	0.597													12	213					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57591086	57591086	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:57591086G>A	uc001snd.2	+	57	9547	c.9081G>A	c.(9079-9081)GAG>GAA	p.E3027E		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3027	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTGCAGACGAGGAACCGTTTC	0.592													17	285					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57865355	57865355	+	Silent	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:57865355A>C	uc001snx.2	+	12	2910	c.2832A>C	c.(2830-2832)CCA>CCC	p.P944P	GLI1_uc009zpq.2_Silent_p.P816P	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	944					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CTAAAGCTCCAGTGAACACAT	0.562													15	83					0	0	1	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58021521	58021521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:58021521C>T	uc001spg.1	-	10	1696	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K	B4GALNT1_uc010sru.1_Missense_Mutation_p.E367K	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	422	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			CCGACGAGCTCGTGGTGGAAG	0.677													3	13					0	0	1	0	0
SLC16A7	9194	broad.mit.edu	37	12	60169185	60169185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:60169185G>A	uc001sqs.2	+	5	1408	c.1109G>A	c.(1108-1110)AGA>AAA	p.R370K	SLC16A7_uc001sqt.2_Missense_Mutation_p.R370K|SLC16A7_uc001squ.2_Missense_Mutation_p.R370K|SLC16A7_uc009zqi.2_Missense_Mutation_p.R271K|SLC16A7_uc010ssi.1_Missense_Mutation_p.R271K	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	370	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GGTGCACCAAGATTTTCCAGT	0.458													3	62					0	0	1	0	0
FAM19A2	338811	broad.mit.edu	37	12	62148676	62148676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:62148676C>T	uc001sqw.2	-	3	1749	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Missense_Mutation_p.R79Q|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	79						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		TGGAGCAGCTCGCGTGGTGCC	0.502													5	39					0	0	1	0	0
MSRB3	253827	broad.mit.edu	37	12	65722340	65722340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:65722340C>T	uc001ssn.2	+	3	302	c.241C>T	c.(241-243)CCT>TCT	p.P81S	MSRB3_uc001ssm.2_Missense_Mutation_p.P74S|MSRB3_uc009zqp.2_Missense_Mutation_p.P74S	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	81					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		TCACAAAGATCCTGGAATATA	0.308													10	75					0	0	1	0	0
MSRB3	253827	broad.mit.edu	37	12	65847568	65847568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:65847568C>T	uc001ssn.2	+	5	435	c.374C>T	c.(373-375)TCC>TTC	p.S125F	MSRB3_uc001ssm.2_Missense_Mutation_p.S118F|MSRB3_uc009zqp.2_Missense_Mutation_p.S118F	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	125					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		GATGACTTTTCCTATGGGATG	0.458													5	76					0	0	1	0	0
CPSF6	11052	broad.mit.edu	37	12	69656203	69656203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:69656203G>A	uc001sut.3	+	9	1630	c.1520G>A	c.(1519-1521)CGA>CAA	p.R507Q	CPSF6_uc001suu.3_Missense_Mutation_p.R544Q|CPSF6_uc010stk.1_Missense_Mutation_p.R139Q	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	507	Arg-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			GAAAAGAGTCGACGTCATAAA	0.383													11	58					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70949651	70949651	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:70949651G>A	uc001swb.3	-	17	4368	c.4338C>T	c.(4336-4338)GAC>GAT	p.D1446D	PTPRB_uc010sto.1_Silent_p.D1356D|PTPRB_uc010stp.1_Silent_p.D1356D|PTPRB_uc001swc.3_Silent_p.D1664D|PTPRB_uc001swa.3_Silent_p.D1576D	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1446	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GACACTTACGGTCTATCATTG	0.522													5	21					0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71526584	71526584	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:71526584G>A	uc009zrt.1	-	6	627	c.465C>T	c.(463-465)GTC>GTT	p.V155V	TSPAN8_uc001swk.1_Silent_p.V155V|TSPAN8_uc001swj.1_Silent_p.V155V	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	155	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			CAGCTCCATTGACCAAACCGC	0.353													6	74					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72050905	72050905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:72050905C>T	uc001swo.2	-	2	1134	c.775G>A	c.(775-777)GAA>AAA	p.E259K	ZFC3H1_uc010sts.1_Missense_Mutation_p.E259K|ZFC3H1_uc001swp.2_Missense_Mutation_p.E259K	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	259	Potential.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TTAGGATCTTCCTGCACATTC	0.348													7	56					0	0	1	0	0
TMEM19	55266	broad.mit.edu	37	12	72083432	72083432	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:72083432C>T	uc001sws.2	+	2	775	c.192C>T	c.(190-192)ATC>ATT	p.I64I	TMEM19_uc001swr.1_Silent_p.I50I|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	64	Helical; (Potential).					integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		CTGTTCTGATCGTCTCTAATG	0.383													11	146					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72771862	72771862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:72771862G>A	uc001sxa.2	+	3	1171	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	381	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AGAATTTTATGAAGACTACTT	0.343													8	86					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72955945	72955945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:72955945G>A	uc001sxa.2	+	8	1684	c.1654G>A	c.(1654-1656)GAT>AAT	p.D552N		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	552	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATTCTTGTAGGATTATTTAAC	0.264													3	32					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75444719	75444719	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:75444719G>A	uc001sxg.1	-	3	1610	c.1066C>T	c.(1066-1068)CTG>TTG	p.L356L	KCNC2_uc009zry.2_Silent_p.L356L|KCNC2_uc001sxe.2_Silent_p.L356L|KCNC2_uc001sxf.2_Silent_p.L356L|KCNC2_uc010stw.1_Silent_p.L356L	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	356	Helical; Voltage-sensor; Name=Segment S4; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						AAAATTCTCAGGATCCTCACA	0.458													4	48					0	0	1	0	0
MYF6	4618	broad.mit.edu	37	12	81102690	81102690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:81102690C>T	uc001szf.1	+	3	733	c.680C>T	c.(679-681)TCC>TTC	p.S227F		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	227					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GACAGTATTTCCTCGGAGGAA	0.527													7	65					0	0	1	0	0
MYF6	4618	broad.mit.edu	37	12	81102693	81102693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:81102693C>T	uc001szf.1	+	3	736	c.683C>T	c.(682-684)TCG>TTG	p.S228L		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	228					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AGTATTTCCTCGGAGGAACGC	0.522													8	62					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81111188	81111188	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:81111188C>T	uc001szg.2	+	1	481	c.346C>T	c.(346-348)CAG>TAG	p.Q116*		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	116	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CAACCCCAACCAGAGGCTGCC	0.592													8	118					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81112695	81112695	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:81112695G>A	uc001szg.2	+	3	768	c.633G>A	c.(631-633)GTG>GTA	p.V211V		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	211					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CCAACATAGTGGACCGGATCA	0.473													10	110					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741536	81741536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:81741536C>T	uc001szo.1	-	18	2169	c.2008G>A	c.(2008-2010)GAA>AAA	p.E670K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	596										ovary(3)|lung(2)|pancreas(1)	6						GATTCTTTTTCTTCCTGAATT	0.383													5	41					0	0	1	0	0
ALX1	8092	broad.mit.edu	37	12	85680754	85680754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:85680754C>T	uc001tae.3	+	3	659	c.655C>T	c.(655-657)CCA>TCA	p.P219S		NM_006982	NP_008913	Q15699	ALX1_HUMAN	cartilage paired-class homeoprotein 1	219					brain development|cartilage condensation|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(134;0.134)		TGACAGCTACCCACAGGTATG	0.358													7	96					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86377425	86377425	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:86377425C>T	uc001tai.3	-	7	1421	c.171G>A	c.(169-171)AGG>AGA	p.R57R	MGAT4C_uc001tal.3_Silent_p.R57R|MGAT4C_uc001taj.3_Silent_p.R57R|MGAT4C_uc001tak.3_Silent_p.R57R|MGAT4C_uc010sum.1_Silent_p.R81R|MGAT4C_uc001tah.3_Silent_p.R57R	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	57	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TGGATGTTTCCCTTATAAGTT	0.328													9	99					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86377445	86377445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:86377445C>T	uc001tai.3	-	7	1401	c.151G>A	c.(151-153)GGA>AGA	p.G51R	MGAT4C_uc001tal.3_Missense_Mutation_p.G51R|MGAT4C_uc001taj.3_Missense_Mutation_p.G51R|MGAT4C_uc001tak.3_Missense_Mutation_p.G51R|MGAT4C_uc010sum.1_Missense_Mutation_p.G75R|MGAT4C_uc001tah.3_Missense_Mutation_p.G51R	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	51	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TGTTTGTCTCCTTCCTAAATA	0.303													5	85					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88379810	88379810	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:88379810G>A	uc001tam.1	-	11	1111	c.943C>T	c.(943-945)CAA>TAA	p.Q315*	C12orf50_uc001tan.2_Nonsense_Mutation_p.Q330*	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	315										skin(2)|ovary(1)	3						ATTTTATTTTGGGGTCTTGGG	0.423													4	65					0	0	1	0	0
CEP290	80184	broad.mit.edu	37	12	88472945	88472945	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:88472945A>T	uc001tar.2	-	39	5632	c.5288T>A	c.(5287-5289)ATT>AAT	p.I1763N	CEP290_uc001taq.2_Missense_Mutation_p.I823N	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1763	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TGCAGAAATAATACGTTCTTC	0.373													5	22					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91347381	91347381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:91347381C>T	uc001tbj.2	-	1	1573	c.1139G>A	c.(1138-1140)AGC>AAC	p.S380N		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	380										central_nervous_system(1)|pancreas(1)	2						AAAAGTGCAGCTTATAAAGTT	0.433													8	106					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91348265	91348265	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:91348265C>T	uc001tbj.2	-	1	689	c.255G>A	c.(253-255)TGG>TGA	p.W85*		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	85										central_nervous_system(1)|pancreas(1)	2						CCCAGCACCCCCAGTTAGAGC	0.632													5	49					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95500733	95500733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:95500733C>T	uc001tdp.3	-	13	3638	c.3414G>A	c.(3412-3414)ATG>ATA	p.M1138I	FGD6_uc009zsx.2_Missense_Mutation_p.M271I|FGD6_uc001tdq.1_Missense_Mutation_p.M174I	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1138	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CACACACCTTCATTCCAGCCA	0.254													21	187					0	0	1	0	0
CCDC38	120935	broad.mit.edu	37	12	96272009	96272009	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:96272009C>A	uc001tek.1	-	13	1492	c.1258G>T	c.(1258-1260)GAA>TAA	p.E420*		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	420										skin(1)	1						GAATTAAATTCTCCAAAGCTA	0.348													5	30					0.000157383	0.000158323	1	1	0
C12orf63	374467	broad.mit.edu	37	12	97043781	97043781	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:97043781G>A	uc001tet.1	+	2	156	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	26										skin(6)|ovary(1)	7						CTAAAGAAAAGGACCGAGGAG	0.328													6	89					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97045402	97045402	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:97045402C>T	uc001tet.1	+	3	262	c.184C>T	c.(184-186)CAG>TAG	p.Q62*		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	62										skin(6)|ovary(1)	7						GACTCTGCTTCAGAACTGCTG	0.393													9	113					0	0	1	0	0
DEPDC4	120863	broad.mit.edu	37	12	100649877	100649877	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:100649877G>A	uc001thi.2	-	4	831	c.828C>T	c.(826-828)ATC>ATT	p.I276I	DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Silent_p.I222I|DEPDC4_uc009ztv.1_Silent_p.I276I|DEPDC4_uc001thk.1_Silent_p.I87I|DEPDC4_uc001thl.1_RNA	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	276					intracellular signal transduction						0						AAGTGTTAGTGATAACAAGAT	0.333													5	82					0	0	1	0	0
SCYL2	55681	broad.mit.edu	37	12	100711595	100711595	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:100711595C>T	uc001thn.2	+	10	1337	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	SCYL2_uc009ztw.1_Silent_p.F256F|SCYL2_uc001thm.1_Silent_p.F429F	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	429					endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						TGTTAATTTTCCTACAAAAAA	0.333													5	31					0	0	1	0	0
SCYL2	55681	broad.mit.edu	37	12	100723063	100723063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:100723063C>T	uc001thn.2	+	13	1777	c.1727C>T	c.(1726-1728)CCC>CTC	p.P576L	SCYL2_uc001thm.1_Missense_Mutation_p.P576L	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	576					endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						CATCTTATTCCCCTGAGTATT	0.328													3	99					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101477456	101477456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:101477456G>A	uc010svm.1	+	16	1968	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	ANO4_uc001thw.2_Missense_Mutation_p.E431K|ANO4_uc001thx.2_Missense_Mutation_p.E466K|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	466	Extracellular (Potential).|Poly-Glu.					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTCCTTTAGGAAGAAATACG	0.378										HNSCC(74;0.22)			13	70					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101587405	101587405	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:101587405C>T	uc001thz.3	-	5	1080	c.690G>A	c.(688-690)TGG>TGA	p.W230*		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	230	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						ACACTTACTTCCAGAAATTTA	0.338													12	134					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101603377	101603377	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:101603377T>C	uc001thz.3	-	1	640	c.250A>G	c.(250-252)ATT>GTT	p.I84V		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	84	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						ATGCTAAAAATGGCCCCAAAA	0.567													7	64					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101740241	101740241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:101740241G>A	uc001tia.1	+	38	4915	c.4759G>A	c.(4759-4761)GCA>ACA	p.A1587T		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1587					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CCACAGAAGAGCAAGAGCCTT	0.358													5	54					0	0	1	0	0
SPIC	121599	broad.mit.edu	37	12	101880426	101880426	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:101880426G>A	uc001tid.2	+	6	783	c.624G>A	c.(622-624)GGG>GGA	p.G208G	SPIC_uc009zua.2_Silent_p.G83G|SPIC_uc010svp.1_Silent_p.G207G	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	208						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						ATTTCCTGGGGAAAGAGATCT	0.388													13	153					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102054994	102054994	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:102054994C>T	uc001tii.2	+	18	2013	c.1911C>T	c.(1909-1911)ATC>ATT	p.I637I	MYBPC1_uc001tig.2_Silent_p.I662I|MYBPC1_uc010svq.1_Silent_p.I624I|MYBPC1_uc001tih.2_Silent_p.I662I|MYBPC1_uc001tij.2_Silent_p.I637I|MYBPC1_uc010svr.1_Silent_p.I637I|MYBPC1_uc010svs.1_Silent_p.I637I|MYBPC1_uc010svt.1_Silent_p.I625I|MYBPC1_uc010svu.1_Silent_p.I618I|MYBPC1_uc001tik.2_Silent_p.I611I	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	637	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ACTGGTGTATCATGAACTGGG	0.483													9	46					0	0	1	0	0
PAH	5053	broad.mit.edu	37	12	103248989	103248989	+	Missense_Mutation	SNP	G	A	A	rs62514931		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:103248989G>A	uc001tjq.1	-	7	1103	c.631C>T	c.(631-633)CCA>TCA	p.P211S	PAH_uc010swc.1_Missense_Mutation_p.P211S	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	211			P -> T (in PKU; haplotype 4).		catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	TCAAGAAGTGGAAAAATGTGA	0.433													6	64					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	103988233	103988233	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:103988233G>A	uc001tjw.2	+	3	462	c.276G>A	c.(274-276)AGG>AGA	p.R92R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	92	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ATATTTGTAGGAAGGACTATC	0.507													10	133					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104060088	104060088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:104060088C>T	uc001tjw.2	+	19	2228	c.2042C>T	c.(2041-2043)TCT>TTT	p.S681F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	681	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTGAGCTGTTCTCTGGTGTAC	0.552													6	113					0	0	1	0	0
GLT8D2	83468	broad.mit.edu	37	12	104391300	104391300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:104391300C>T	uc001tkh.1	-	7	822	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	GLT8D2_uc001tki.1_Missense_Mutation_p.R139Q	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	139	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						GAGATAAAATCGAACAAAGTT	0.438													5	91					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106477677	106477677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:106477677C>T	uc001tlj.1	-	4	1924	c.544G>A	c.(544-546)GAA>AAA	p.E182K		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	182	Protein kinase.						ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						AGTATATTTTCCAGCTTCAAG	0.498													6	80					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106704926	106704926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:106704926G>A	uc001tln.2	+	2	247	c.73G>A	c.(73-75)GAA>AAA	p.E25K	TCP11L2_uc001tll.2_Missense_Mutation_p.E25K|TCP11L2_uc001tlm.2_Missense_Mutation_p.E25K|TCP11L2_uc001tlo.1_RNA	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	25	Ser-rich.									ovary(3)	3						CCGGTTTTCCGAAAGCATGGC	0.522													8	91					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	107712800	107712800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:107712800C>T	uc001tmk.1	+	1	604	c.83C>T	c.(82-84)TCG>TTG	p.S28L	BTBD11_uc009zut.1_Missense_Mutation_p.S28L|BTBD11_uc001tmj.2_Missense_Mutation_p.S28L	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	28						integral to membrane	DNA binding			skin(2)|ovary(1)	3						GCGGCGGACTCGGTGCGCTCC	0.642													3	31					0	0	1	0	0
WSCD2	9671	broad.mit.edu	37	12	108603974	108603974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:108603974G>A	uc001tms.2	+	4	1318	c.574G>A	c.(574-576)GAG>AAG	p.E192K	WSCD2_uc001tmt.2_Missense_Mutation_p.E192K	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	192	WSC 1.					integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GAACGTGAGCGAGGCAGAGTG	0.677													8	54					0	0	1	0	0
SELPLG	6404	broad.mit.edu	37	12	109017296	109017296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:109017296G>A	uc001tni.2	-	2	948	c.788C>T	c.(787-789)TCC>TTC	p.S263F	SELPLG_uc001tnh.2_Missense_Mutation_p.S253F|SELPLG_uc010sxe.1_Missense_Mutation_p.S279F	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	263	Extracellular (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GGGTTCTGTGGACAGGGCCTC	0.572													6	78					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109509434	109509434	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:109509434C>T	uc010sxi.1	+	5	602	c.498C>T	c.(496-498)TTC>TTT	p.F166F	USP30_uc001tnu.3_Silent_p.F135F	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	166	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						ACGAATTATTCCATGTCATTA	0.478													10	105					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110240799	110240799	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:110240799G>A	uc001tpj.1	-	3	804	c.709C>T	c.(709-711)CGA>TGA	p.R237*	TRPV4_uc001tpg.1_Nonsense_Mutation_p.R203*|TRPV4_uc001tph.1_Nonsense_Mutation_p.R237*|TRPV4_uc001tpi.1_Nonsense_Mutation_p.R237*|TRPV4_uc001tpk.1_Nonsense_Mutation_p.R237*|TRPV4_uc001tpl.1_Nonsense_Mutation_p.R237*	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	237	Cytoplasmic (Potential).|ANK 1.				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GCCCCACCTCGATAGTAGATG	0.607													3	49					0	0	1	0	0
ATP2A2	488	broad.mit.edu	37	12	110778504	110778504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:110778504C>T	uc001tqk.3	+	14	2365	c.1802C>T	c.(1801-1803)CCT>CTT	p.P601L	ATP2A2_uc001tql.3_Missense_Mutation_p.P601L|ATP2A2_uc010sxy.1_Missense_Mutation_p.P574L	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	601	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						ATGCTGGATCCTCCGAGAATC	0.517													15	211					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111746259	111746259	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:111746259T>C	uc001tsa.1	+	14	1340	c.1187T>C	c.(1186-1188)CTT>CCT	p.L396P		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	396						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GACTCACTGCTTATTGCAAAG	0.617													6	30					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785798	111785798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:111785798C>T	uc001tsa.1	+	22	4283	c.4130C>T	c.(4129-4131)CCT>CTT	p.P1377L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1377	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CACCCGGACCCTTTAAGTTTT	0.622													7	139					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113382387	113382387	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113382387G>A	uc001tug.2	+	3	654	c.567G>A	c.(565-567)AGG>AGA	p.R189R	OAS3_uc001tuf.2_Silent_p.R189R	NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	189	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGCTGCGGAGGAACTTTGTGA	0.567													8	81					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113405798	113405798	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113405798C>T	uc001tug.2	+	14	3010	c.2923C>T	c.(2923-2925)CTG>TTG	p.L975L		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	975	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GCTGGAACTCCTGACTGTGTA	0.582													5	67					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113424927	113424927	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113424927C>T	uc001tuj.2	+	2	402	c.262C>T	c.(262-264)CAG>TAG	p.Q88*	OAS2_uc001tuh.2_Nonsense_Mutation_p.Q88*|OAS2_uc001tui.1_Nonsense_Mutation_p.Q88*	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	88	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AAAACAATTCCAGGATCAGAA	0.453													10	100					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113435491	113435491	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113435491G>A	uc001tuj.2	+	4	934	c.794G>A	c.(793-795)TGG>TAG	p.W265*	OAS2_uc001tui.1_Nonsense_Mutation_p.W265*	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	265	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						TGTATCTATTGGATGGTCAAC	0.502													3	20					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113448259	113448259	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113448259C>T	uc001tuj.2	+	11	2270	c.2130C>T	c.(2128-2130)ATC>ATT	p.I710I	OAS2_uc001tui.1_3'UTR	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	710					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						GCCATAGAATCCTGAATAATA	0.403													19	157					0	0	1	0	0
IQCD	115811	broad.mit.edu	37	12	113633433	113633433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113633433C>T	uc001tuu.2	-	3	1163	c.991G>A	c.(991-993)GAC>AAC	p.D331N		NM_138451	NP_612460	Q96DY2	IQCD_HUMAN	IQ motif containing D	Error:Variant_position_missing_in_Q96DY2_after_alignment										ovary(1)	1						ttctccttgtcctttgctttg	0.378													10	100					0	0	1	0	0
SDS	10993	broad.mit.edu	37	12	113831782	113831782	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:113831782C>T	uc001tvg.2	-	7	815	c.693G>A	c.(691-693)CAG>CAA	p.Q231Q		NM_006843	NP_006834	P20132	SDHL_HUMAN	serine dehydratase	231					gluconeogenesis|L-serine catabolic process|pyruvate biosynthetic process	cytoplasm	L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|protein homodimerization activity|pyridoxal phosphate binding			pancreas(1)	1					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GCTTCAGGGCCTGAGCCCCCA	0.458													8	78					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114383675	114383675	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:114383675G>A	uc009zwi.2	-	13	1728	c.1584C>T	c.(1582-1584)ATC>ATT	p.I528I	RBM19_uc001tvn.3_Silent_p.I528I|RBM19_uc001tvm.2_Silent_p.I528I	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	528					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					ACTTCTGTGCGATGGCATCGG	0.552													4	50					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114395761	114395762	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:114395761_114395762AG>TA	uc009zwi.2	-	6	809_810	c.665_666CT>TA	c.(664-666)TCT>TTA	p.S222L	RBM19_uc001tvn.3_Missense_Mutation_p.S222L|RBM19_uc001tvm.2_Missense_Mutation_p.S222L	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	222					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					CCTCCGAGGAAGAGGACGACCC	0.55													14	132					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117914303	117914303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:117914303G>A	uc001two.2	-	17	2516	c.2461C>T	c.(2461-2463)CCC>TCC	p.P821S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	850	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTGGAGAAGGGGAGCTTATCC	0.602													4	12					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117977619	117977619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:117977619G>A	uc001two.2	-	10	1560	c.1505C>T	c.(1504-1506)TCG>TTG	p.S502L		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	531	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGTGCTGGCGAGGAGGGCGT	0.632													7	88					0	0	1	0	0
VSIG10	54621	broad.mit.edu	37	12	118533403	118533403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:118533403C>T	uc001tws.2	-	2	630	c.296G>A	c.(295-297)GGA>GAA	p.G99E		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	99	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane					0						GGTGTAGATTCCCTCATCTCC	0.597													10	142					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119588924	119588924	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:119588924C>T	uc001txa.1	+	10	1471	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	393	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CCCGCAGCTCCTCCTATGCCA	0.567													4	104					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119594328	119594328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:119594328C>T	uc001txa.1	+	13	1853	c.1561C>T	c.(1561-1563)CGG>TGG	p.R521W		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	521	Ser-rich.|Arg-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CCCCTACTATCGGCCCAGCCC	0.642													9	58					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119954511	119954511	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:119954511A>G	uc001txe.2	+	8	1432	c.967A>G	c.(967-969)AGC>GGC	p.S323G	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	323										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		AAAAGCACCCAGGTATGTGCT	0.348													7	28					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582780	120582780	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:120582780A>G	uc001txo.2	-	40	5115	c.5102T>C	c.(5101-5103)ATG>ACG	p.M1701T		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1701					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAGTGTCTCCATCAGCCACGG	0.607													6	77					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121691110	121691110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:121691110G>A	uc001tzu.2	-	10	1197	c.1073C>T	c.(1072-1074)TCG>TTG	p.S358L	CAMKK2_uc001tzt.2_Missense_Mutation_p.S358L|CAMKK2_uc001tzv.2_Missense_Mutation_p.S358L|CAMKK2_uc001tzw.2_Missense_Mutation_p.S358L|CAMKK2_uc001tzx.2_Missense_Mutation_p.S358L|CAMKK2_uc001tzy.2_Missense_Mutation_p.S358L|CAMKK2_uc001tzz.1_Missense_Mutation_p.S145L|CAMKK2_uc001uaa.1_Missense_Mutation_p.S358L|CAMKK2_uc001uab.2_Missense_Mutation_p.S358L|CAMKK2_uc001uac.2_Missense_Mutation_p.S358L	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	358	Protein kinase.				calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTCAGAGAGCGACTCGGGTGC	0.498													5	78					0	0	1	0	0
ORAI1	84876	broad.mit.edu	37	12	122079087	122079087	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:122079087C>T	uc010szz.1	+	3	637	c.444C>T	c.(442-444)ATC>ATT	p.I148I		NM_032790	NP_116179	Q96D31	CRCM1_HUMAN	calcium release-activated calcium channel	148	Cytoplasmic (Potential).				platelet activation|positive regulation of calcium ion transport	integral to plasma membrane	protein binding|store-operated calcium channel activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000415)|Epithelial(86;0.00148)		TGCCCAACATCGAGGCGGTGA	0.622													5	87					0	0	1	0	0
ORAI1	84876	broad.mit.edu	37	12	122079402	122079402	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:122079402C>T	uc010szz.1	+	3	952	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_032790	NP_116179	Q96D31	CRCM1_HUMAN	calcium release-activated calcium channel	253	Helical; (Potential).				platelet activation|positive regulation of calcium ion transport	integral to plasma membrane	protein binding|store-operated calcium channel activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000415)|Epithelial(86;0.00148)		TTATCGTCTTCGCCGTCCACT	0.612													11	83					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122623075	122623075	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:122623075C>T	uc001ubq.2	+	14	2361	c.2361C>T	c.(2359-2361)ATC>ATT	p.I787I	MLXIP_uc001ubt.2_Silent_p.I394I	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	787	Leucine-zipper.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		GGGAGGAGATCGAGGAGCTCA	0.632													6	23					0	0	1	0	0
CCDC62	84660	broad.mit.edu	37	12	123276650	123276650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:123276650G>A	uc001udc.2	+	6	899	c.754G>A	c.(754-756)GAT>AAT	p.D252N	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.D252N|CCDC62_uc001ude.2_Intron	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	252	Potential.					cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		TTGCCTGCACGATGAATTGCT	0.393													5	62					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124417957	124417957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:124417957C>T	uc001uft.3	+	76	13047	c.13022C>T	c.(13021-13023)GCC>GTC	p.A4341V	DNAH10_uc001ufu.3_Missense_Mutation_p.A254V	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4341					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTGGTGCAGGCCACCTGCCGG	0.612													4	49					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834065	125834065	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:125834065G>A	uc001uhe.1	+	2	128	c.120G>A	c.(118-120)ACG>ACA	p.T40T		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	40	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		ACCTCCCCACGAACTTGCACA	0.502													21	218					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126128661	126128661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:126128661G>A	uc001uhe.1	+	6	1470	c.1462G>A	c.(1462-1464)GAA>AAA	p.E488K	TMEM132B_uc001uhf.1_5'UTR	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	488	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAATGGGAAGGAAATGAAGAG	0.483													7	85					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137058	126137058	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:126137058C>T	uc001uhe.1	+	8	1979	c.1971C>T	c.(1969-1971)ATC>ATT	p.I657I	TMEM132B_uc001uhf.1_Silent_p.I169I	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	657	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAGTCACCATCGCGGAGCTGG	0.587													6	81					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126139151	126139151	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:126139151C>T	uc001uhe.1	+	9	3140	c.3132C>T	c.(3130-3132)ATC>ATT	p.I1044I	TMEM132B_uc001uhf.1_Silent_p.I556I	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	1044	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCAACTCCATCCTGTTTGACA	0.498													8	92					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926783	130926783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:130926783C>T	uc001uil.2	-	8	1227	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	RIMBP2_uc001uim.2_Missense_Mutation_p.E263K|RIMBP2_uc001uin.1_Missense_Mutation_p.E14K	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	355	Fibronectin type-III 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTGAGCTTCTCGATGAGGGCT	0.612													8	91					0	0	1	0	0
PUS1	80324	broad.mit.edu	37	12	132426289	132426289	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:132426289C>T	uc001ujf.2	+	5	1476	c.997C>T	c.(997-999)CTG>TTG	p.L333L	PUS1_uc001ujg.2_Silent_p.L305L|PUS1_uc001ujh.2_Silent_p.L305L|PUS1_uc001uji.2_Silent_p.L280L	NM_025215	NP_079491	Q9Y606	TRUA_HUMAN	pseudouridine synthase 1 isoform 1	333						mitochondrion	pseudouridine synthase activity|pseudouridylate synthase activity|RNA binding			breast(1)|central_nervous_system(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.05e-08)|Epithelial(86;2.51e-07)|all cancers(50;2.94e-07)		CGGACTCGGCCTGGTCCTGGA	0.642													6	55					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132530313	132530313	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:132530313C>T	uc001ujn.2	+	38	7103	c.7068C>T	c.(7066-7068)ATC>ATT	p.I2356I	EP400_uc001ujl.2_Silent_p.I2355I|EP400_uc001ujm.2_Silent_p.I2275I	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2392	Myb-like.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		ACCTCACAATCGTGTCACCTG	0.478													5	44					0	0	1	0	0
CHFR	55743	broad.mit.edu	37	12	133418169	133418169	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:133418169T>A	uc001ulf.2	-	18	2050	c.1966A>T	c.(1966-1968)ATC>TTC	p.I656F	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.I644F|CHFR_uc010tbs.1_Missense_Mutation_p.I655F|CHFR_uc001uld.2_Missense_Mutation_p.I615F|CHFR_uc010tbt.1_Missense_Mutation_p.I564F	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	656					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		TGTTCACAGATATGATTGAAT	0.418													15	143					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751273	19751273	+	Missense_Mutation	SNP	C	T	T	rs146654670		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:19751273C>T	uc009zzj.2	-	4	899	c.850G>A	c.(850-852)GAG>AAG	p.E284K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	284					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity	p.E284K(1)		ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GACAGCTGCTCGTGGTAGGCC	0.607													29	279					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19752532	19752532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:19752532C>T	uc009zzj.2	-	3	278	c.229G>A	c.(229-231)GAA>AAA	p.E77K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	77					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GTGCGCACTTCATCTACAAAA	0.473													4	76					0	0	1	0	0
GJB2	2706	broad.mit.edu	37	13	20763235	20763235	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:20763235G>A	uc001umy.2	-	2	701	c.486C>T	c.(484-486)TCC>TCT	p.S162S		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	162	Extracellular (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		GCCGCTGCATGGAGAAGCCGT	0.552									Keratitis_Ichthyosis_and_Deafness_syndrome				4	61					0	0	1	0	0
SGCG	6445	broad.mit.edu	37	13	23808758	23808758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:23808758G>A	uc001uom.2	+	3	359	c.204G>A	c.(202-204)ATG>ATA	p.M68I	SGCG_uc009zzv.2_Missense_Mutation_p.M68I|SGCG_uc009zzw.2_Missense_Mutation_p.M68I	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	68	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		AGGCAGGAATGGGCCACTTGT	0.353													6	71					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23911713	23911713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:23911713G>A	uc001uon.2	-	10	6891	c.6302C>T	c.(6301-6303)TCC>TTC	p.S2101F	SACS_uc001uoo.2_Missense_Mutation_p.S1954F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2101					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CCCCTCCAAGGAACAAGGAAT	0.398													3	41					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23914626	23914626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:23914626G>A	uc001uon.2	-	10	3978	c.3389C>T	c.(3388-3390)ACC>ATC	p.T1130I	SACS_uc001uoo.2_Missense_Mutation_p.T983I|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1130					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CAGTAAGAGGGTTTTGGCTTT	0.393													18	121					0	0	1	0	0
TNFRSF19	55504	broad.mit.edu	37	13	24167504	24167504	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:24167504A>T	uc001uov.1	+	3	154	c.90A>T	c.(88-90)GAA>GAT	p.E30D	TNFRSF19_uc001uot.2_Missense_Mutation_p.E30D|TNFRSF19_uc010tcu.1_Intron|TNFRSF19_uc001uow.2_Missense_Mutation_p.E30D|TNFRSF19_uc001uou.2_Missense_Mutation_p.E30D	NM_018647	NP_061117	Q9NS68	TNR19_HUMAN	tumor necrosis factor receptor superfamily,	30	Extracellular (Potential).				apoptosis|induction of apoptosis|JNK cascade	integral to membrane|mitochondrion	tumor necrosis factor receptor activity			kidney(1)|skin(1)	2		all_cancers(29;3.4e-22)|all_epithelial(30;8.75e-19)|all_lung(29;5.09e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00193)|Epithelial(112;0.0137)|OV - Ovarian serous cystadenocarcinoma(117;0.0465)|GBM - Glioblastoma multiforme(144;0.184)|Lung(94;0.19)		TGACTTGTGAATCAGGAGACT	0.358													8	94					0	0	1	0	0
PARP4	143	broad.mit.edu	37	13	25000604	25000604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:25000604C>T	uc001upl.2	-	33	5085	c.4979G>A	c.(4978-4980)AGG>AAG	p.R1660K		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1660	Interaction with the major vault protein.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		TTAAAGCCACCTGGAAATAGA	0.333													7	57					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25338387	25338387	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:25338387C>T	uc001upr.2	+	1	87	c.46C>T	c.(46-48)CAG>TAG	p.Q16*	RNF17_uc010tdd.1_5'UTR|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Nonsense_Mutation_p.Q16*|RNF17_uc001ups.2_5'UTR|RNF17_uc001upq.1_Nonsense_Mutation_p.Q16*	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	16					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GTCTTCCTACCAGCGAATGGG	0.622													8	47					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25440337	25440337	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:25440337T>C	uc001upr.2	+	30	4198	c.4157T>C	c.(4156-4158)TTT>TCT	p.F1386S	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.F1382S|RNF17_uc001ups.2_Missense_Mutation_p.F1325S|RNF17_uc010aac.2_Missense_Mutation_p.F578S|RNF17_uc010aad.2_Missense_Mutation_p.F396S	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1386					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GAAATAAGGTTTGAGGTAAGT	0.294													5	138					0	0	1	0	0
RNF6	6049	broad.mit.edu	37	13	26789091	26789091	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:26789091G>A	uc001uqo.2	-	5	1219	c.928C>T	c.(928-930)CGA>TGA	p.R310*	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Nonsense_Mutation_p.R310*|RNF6_uc001uqp.2_Nonsense_Mutation_p.R310*|RNF6_uc001uqq.2_Nonsense_Mutation_p.R310*|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	310	Arg-rich.				negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		GAACGGCTTCGACTATTGGAA	0.413													22	184					0	0	1	0	0
CDX2	1045	broad.mit.edu	37	13	28543051	28543051	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:28543051G>A	uc001urv.2	-	1	267	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001265	NP_001256	Q99626	CDX2_HUMAN	caudal type homeobox 2	31					organ morphogenesis|transcription from RNA polymerase II promoter		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(110;0.191)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		GGGGGCTGACGAAGTTCTGCG	0.672			T	ETV6	AML								3	21					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28623828	28623828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:28623828G>A	uc001urw.2	-	7	908	c.826C>T	c.(826-828)CAT>TAT	p.H276Y	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.H276Y	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	276	Extracellular (Potential).|Ig-like C2-type.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGGTTCACATGAACAGCTTTG	0.398			Mis|O		AML|ALL								11	73					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28885851	28885851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:28885851G>A	uc001usb.3	-	27	3796	c.3511C>T	c.(3511-3513)CCA>TCA	p.P1171S	FLT1_uc010aap.2_Missense_Mutation_p.P176S|FLT1_uc010aaq.2_Missense_Mutation_p.P296S|FLT1_uc001usa.3_Missense_Mutation_p.P389S	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1171	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GCATTGATTGGGATGTAGTCT	0.388													9	128					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33628294	33628294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:33628294G>A	uc001uus.2	+	2	1218	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	KL_uc001uur.1_Missense_Mutation_p.E97K	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	404	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GATTGACCTTGAATTTAACCA	0.418													22	173					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33629411	33629411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:33629411C>T	uc001uus.2	+	3	1566	c.1558C>T	c.(1558-1560)CCC>TCC	p.P520S	KL_uc001uur.1_Missense_Mutation_p.P213S	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	520	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AGGGACATTTCCCTGTGACTT	0.438													6	72					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	36026303	36026303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:36026303G>A	uc001uvb.2	+	40	6585	c.6379G>A	c.(6379-6381)GAA>AAA	p.E2127K	NBEA_uc010abi.2_Missense_Mutation_p.E783K	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2127						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGCAGAGACAGAACTTATGCT	0.343													3	16					0	0	1	0	0
C13orf36	400120	broad.mit.edu	37	13	37269359	37269359	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:37269359C>T	uc001uvt.3	+	2	590	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	48	Helical; (Potential).					integral to membrane				skin(1)	1						TGTCCATATTCCTCAGCCTTT	0.478													5	111					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37427604	37427604	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:37427604G>A	uc001uvw.2	-	6	1555	c.1212C>T	c.(1210-1212)GTC>GTT	p.V404V	SMAD9_uc001uvx.2_Silent_p.V367V|SMAD9_uc010tep.1_Silent_p.V197V	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	404	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GTTCATACACGACTTCAAAGC	0.473													5	80					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39453094	39453094	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:39453094G>C	uc001uwv.2	+	23	9295	c.8986G>C	c.(8986-8988)GAC>CAC	p.D2996H		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2996	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATTTAAAGTCGACTCAACACC	0.308													5	90					0	0	1	0	0
DGKH	160851	broad.mit.edu	37	13	42740672	42740672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:42740672C>T	uc001uyl.1	+	9	1001	c.980C>T	c.(979-981)TCG>TTG	p.S327L	DGKH_uc010tfh.1_Missense_Mutation_p.S327L|DGKH_uc001uym.1_Missense_Mutation_p.S327L|DGKH_uc010tfi.1_Missense_Mutation_p.S82L|DGKH_uc010tfj.1_Missense_Mutation_p.S182L|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.S182L|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	327					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GCAACATTTTCGTTCTGTGTT	0.353													3	74					0	0	1	0	0
DGKH	160851	broad.mit.edu	37	13	42763274	42763274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:42763274G>A	uc001uyl.1	+	15	1762	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	DGKH_uc010tfh.1_Missense_Mutation_p.E581K|DGKH_uc001uym.1_Missense_Mutation_p.E581K|DGKH_uc010tfi.1_Missense_Mutation_p.E336K|DGKH_uc010tfj.1_Missense_Mutation_p.E436K|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.E436K|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	581					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		CATTGTGGAAGAAGATGCTGT	0.532													5	50					0	0	1	0	0
NUFIP1	26747	broad.mit.edu	37	13	45554049	45554049	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:45554049C>T	uc001uzp.2	-	4	675	c.633G>A	c.(631-633)AAG>AAA	p.K211K		NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	211					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		ACTGGACAATCTTCTCGTGTG	0.284													5	47					0	0	1	0	0
LECT1	11061	broad.mit.edu	37	13	53307360	53307360	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:53307360G>A	uc001vhf.2	-	3	459	c.348C>T	c.(346-348)TTC>TTT	p.F116F	LECT1_uc001vhg.2_Silent_p.F116F|LECT1_uc001vhh.2_Silent_p.F143F	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	116	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		TTACATTCTGGAAATCATTAA	0.408													11	142					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53419612	53419612	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:53419612G>A	uc001vhi.2	-	2	2990	c.2787C>T	c.(2785-2787)TCC>TCT	p.S929S	PCDH8_uc001vhj.2_Silent_p.S832S	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	929	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGCTGATGTCGGAATCGCTGT	0.522													11	105					0	0	1	0	0
DIAPH3	81624	broad.mit.edu	37	13	60240893	60240893	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:60240893A>G	uc001vht.2	-	28	3626	c.3407T>C	c.(3406-3408)CTT>CCT	p.L1136P	DIAPH3_uc001vhs.2_RNA	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	1136					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		ATTATAATTAAGCTCCTTGGC	0.418													16	102					0	0	1	0	0
DIAPH3	81624	broad.mit.edu	37	13	60407285	60407285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:60407285C>T	uc001vht.2	-	24	3202	c.2983G>A	c.(2983-2985)GAA>AAA	p.E995K	DIAPH3_uc001vhu.2_Missense_Mutation_p.E732K	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	995	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		AGAAAGTCTTCCACAGACACC	0.294													3	41					0	0	1	0	0
TDRD3	81550	broad.mit.edu	37	13	61102815	61102815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:61102815C>T	uc001via.2	+	11	1965	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S	TDRD3_uc010aef.2_Missense_Mutation_p.P218S|TDRD3_uc001vhz.3_Missense_Mutation_p.P393S|TDRD3_uc010aeg.2_Missense_Mutation_p.P486S|TDRD3_uc001vib.3_Missense_Mutation_p.P392S	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	393					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		TACTTCATATCCTTTAGGTTC	0.373													4	61					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61985637	61985637	+	Silent	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:61985637T>G	uc001vid.3	-	2	2959	c.2595A>C	c.(2593-2595)ATA>ATC	p.I865I	PCDH20_uc010thj.1_Silent_p.I865I	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	838	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CTTTCTCCTCTATATTAATCT	0.398													4	44					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	67800233	67800233	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:67800233A>C	uc001vik.2	-	2	3032	c.2340T>G	c.(2338-2340)AAT>AAG	p.N780K	PCDH9_uc001vil.2_Missense_Mutation_p.N780K|PCDH9_uc010thl.1_Missense_Mutation_p.N780K|PCDH9_uc001vin.3_Missense_Mutation_p.N780K	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	780	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TATAGGAGGCATTTCCAGCAG	0.458													5	99					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76417031	76417031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:76417031C>T	uc001vjv.2	+	22	4137	c.3377C>T	c.(3376-3378)TCA>TTA	p.S1126L	LMO7_uc010thv.1_Missense_Mutation_p.S1077L|LMO7_uc001vjt.1_Missense_Mutation_p.S1025L|LMO7_uc010thw.1_Missense_Mutation_p.S1003L|LMO7_uc001vjw.1_Missense_Mutation_p.S1032L	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1411						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GAAGCATCTTCAGGTTTTCTT	0.353													6	70					0	0	1	0	0
BTF3L1	690	broad.mit.edu	37	13	77502732	77502732	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:77502732C>T	uc001vkb.3	+	1		c.148C>T				NR_026983				Homo sapiens basic transcription factor 3, like 1, mRNA (cDNA clone IMAGE:40013884).												0						GTTCAGGCATCGCTGGCAGCA	0.443													7	39					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77636804	77636804	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:77636804A>G	uc001vkf.2	-	75	12678	c.12587T>C	c.(12586-12588)GTT>GCT	p.V4196A	MYCBP2_uc010aev.2_Missense_Mutation_p.V3600A|MYCBP2_uc001vke.2_Missense_Mutation_p.V813A	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CTGATCAAGAACACATAGGGA	0.428													6	90					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77862314	77862314	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:77862314G>A	uc001vkf.2	-	4	553	c.462C>T	c.(460-462)CCC>CCT	p.P154P	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCTTGATAGGGGGCTCTTTGG	0.333													13	156					0	0	1	0	0
RBM26	64062	broad.mit.edu	37	13	79911419	79911419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:79911419G>A	uc001vkz.2	-	19	2571	c.2557C>T	c.(2557-2559)CTT>TTT	p.L853F	RBM26_uc001vky.2_Missense_Mutation_p.L824F|RBM26_uc001vla.2_Missense_Mutation_p.L827F|RBM26_uc010tia.1_Missense_Mutation_p.L208F|RBM26_uc001vkx.2_Missense_Mutation_p.L563F	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	851					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		CCAGATGAAAGAATCCCTCGT	0.517													11	128					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454500	84454500	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:84454500G>A	uc001vlk.2	-	1	2029	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	381	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TATCTCGTAGGAAAAGCTCCT	0.468													13	112					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369306	86369306	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:86369306G>A	uc001vll.1	-	2	1797	c.1338C>T	c.(1336-1338)GCC>GCT	p.A446A	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	446	Extracellular (Potential).|LRR 9.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TTTCCTTAATGGCATTGTATT	0.333													4	42					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92408619	92408619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:92408619G>A	uc010tif.1	+	5	1591	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	409						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TTGTGCTAATGAATTAGCTGC	0.373													6	64					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96237103	96237103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:96237103C>T	uc001vmk.2	-	22	3263	c.2411G>A	c.(2410-2412)GGA>GAA	p.G804E	DZIP1_uc001vmi.2_Missense_Mutation_p.G52E|DZIP1_uc001vmj.2_Missense_Mutation_p.G280E|DZIP1_uc001vml.2_Missense_Mutation_p.G785E|DZIP1_uc001vmm.2_5'Flank	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	804					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AGATTTTTTTCCCAAAGATAT	0.428													6	55					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96264374	96264374	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:96264374T>C	uc001vmk.2	-	11	2083	c.1231A>G	c.(1231-1233)AAT>GAT	p.N411D	DZIP1_uc001vml.2_Missense_Mutation_p.N411D	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	411	Potential.				germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			tagaaaacattgcttgcattt	0.323													4	62					0	0	1	0	0
OXGR1	27199	broad.mit.edu	37	13	97639498	97639498	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:97639498G>A	uc001vmx.1	-	4	760	c.516C>T	c.(514-516)ATC>ATT	p.I172I	OXGR1_uc010afr.1_Silent_p.I172I	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	172	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			TGGTTGATGTGATCAAGAAGG	0.453													10	101					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99364754	99364754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:99364754C>T	uc001vno.2	-	10	885	c.808G>A	c.(808-810)GAT>AAT	p.D270N		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	270	Cytoplasmic (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TTACTTACATCGTATTTCTCT	0.428													4	101					0	0	1	0	0
DOCK9	23348	broad.mit.edu	37	13	99505667	99505667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:99505667G>A	uc001vnt.2	-	35	3999	c.3944C>T	c.(3943-3945)TCT>TTT	p.S1315F	DOCK9_uc001vnw.2_Missense_Mutation_p.S1314F|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.S1315F|DOCK9_uc010tip.1_Missense_Mutation_p.S2F|DOCK9_uc010tiq.1_Missense_Mutation_p.S293F	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1315					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCTACCATCAGACATGCTCTT	0.368													14	153					0	0	1	0	0
ZIC5	85416	broad.mit.edu	37	13	100617672	100617672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:100617672C>T	uc001vom.1	-	2	2200	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K		NM_033132	NP_149123	Q96T25	ZIC5_HUMAN	zinc finger protein of the cerebellum 5	651					cell differentiation	nucleus	DNA binding|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCGTAAATTTCCTCATCTTCA	0.473													12	157					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101759870	101759870	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:101759870A>G	uc001vox.1	-	22	2736	c.2547T>C	c.(2545-2547)TTT>TTC	p.F849F		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	849	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCACCCGGCAAAAGTTTCTGA	0.507													9	72					0	0	1	0	0
C13orf27	93081	broad.mit.edu	37	13	103421788	103421788	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:103421788C>G	uc001vpo.2	-	3	297	c.119G>C	c.(118-120)GGA>GCA	p.G40A	C13orf27_uc001vpn.2_5'UTR|C13orf27_uc001vpp.2_5'UTR	NM_138779	NP_620134	Q5JUR7	CM027_HUMAN	hypothetical protein LOC93081	40											0	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATTCATATCTCCTGATGCTCC	0.348													4	66					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718593	103718593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:103718593C>T	uc001vpy.3	-	1	604	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	3	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTGTTCGGATCATTCATTGCT	0.507													9	97					0	0	1	0	0
FAM155A	728215	broad.mit.edu	37	13	108518262	108518262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:108518262G>A	uc001vql.2	-	1	1199	c.683C>T	c.(682-684)TCC>TTC	p.S228F		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	228						integral to membrane	binding			skin(1)	1						AAGTGTGTAGGAATTACAAAA	0.567													12	172					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110828825	110828825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:110828825C>T	uc001vqw.3	-	36	3126	c.3004G>A	c.(3004-3006)GGT>AGT	p.G1002S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1002	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTGGAGCACCTGGGGTTCCA	0.488													4	95					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111082947	111082947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:111082947G>A	uc001vqx.2	+	10	930	c.641G>A	c.(640-642)GGG>GAG	p.G214E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	214	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGAGCTCCAGGGAGACCAGTA	0.567													17	125					0	0	1	0	0
CARKD	55739	broad.mit.edu	37	13	111274599	111274599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:111274599C>T	uc001vrb.2	+	2	151	c.137C>T	c.(136-138)TCG>TTG	p.S46L	CARKD_uc010tji.1_Missense_Mutation_p.S28L|CARKD_uc010tjj.1_Missense_Mutation_p.S28L|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_RNA|CARKD_uc010tjk.1_Intron|CARKD_uc010tjl.1_Intron|CARKD_uc001vrc.2_Missense_Mutation_p.S46L			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	46										skin(1)	1						AAAGCACATTCGATAAAGGAT	0.363													6	29					0	0	1	0	0
F10	2159	broad.mit.edu	37	13	113803313	113803313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:113803313G>A	uc001vsx.2	+	8	1006	c.949G>A	c.(949-951)GAG>AAG	p.E317K	F10_uc001vsy.2_Silent_p.R313R|F10_uc001vsz.2_Silent_p.R315R	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	317	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTCACAAAGGAGACCTATGA	0.647													26	269					0	0	1	0	0
CUL4A	8451	broad.mit.edu	37	13	113909298	113909298	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:113909298C>T	uc010tjy.1	+	19	1901	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S	CUL4A_uc010tjx.1_Silent_p.S530S|CUL4A_uc010agu.2_Silent_p.S491S|CUL4A_uc010tjz.1_Silent_p.S309S	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	630					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CGCTGCAGTCCCTGGCCTGTG	0.458													3	36					0	0	1	0	0
GRK1	6011	broad.mit.edu	37	13	114321934	114321934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr13:114321934C>T	uc010tkf.1	+	1	341	c.233C>T	c.(232-234)TCG>TTG	p.S78L		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	78	RGS.|N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			TTCCTACAATCGGCAGAGAAG	0.577													10	69					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19378008	19378008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:19378008C>T	uc010tkp.1	+	1	415	c.415C>T	c.(415-417)CTT>TTT	p.L139F		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGATCAGTACCTTGCTATCTG	0.438													8	115					0	0	1	0	0
P704P	641455	broad.mit.edu	37	14	20019936	20019936	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20019936C>T	uc001vwc.3	-	1	337	c.285G>A	c.(283-285)AGG>AGA	p.R95R	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	95											0						CCATCTTGCTCCTGAGTGTCT	0.627													7	371					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216060	20216060	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20216060C>T	uc010tkt.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCACTCTATCATGCAGGTCA	0.507													4	35					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216405	20216405	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20216405C>T	uc010tkt.1	+	1	819	c.819C>T	c.(817-819)TCC>TCT	p.S273S		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGATATTCTCCTTGTTTTACA	0.433													6	64					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20248730	20248730	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20248730A>T	uc010tku.1	+	1	249	c.249A>T	c.(247-249)ATA>ATT	p.I83I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAATGCTCATAGACTTCTTTG	0.448													23	211					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20248759	20248759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20248759C>T	uc010tku.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAGATAATTTCCTTTGGTGGA	0.448													20	213					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345316	20345316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20345316C>T	uc001vwh.1	+	1	890	c.890C>T	c.(889-891)GCC>GTC	p.A297V		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTAAAGATAGCCATGAGGAAA	0.348													6	39					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20388965	20388965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20388965C>T	uc010tkw.1	+	1	200	c.200C>T	c.(199-201)TCC>TTC	p.S67F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGAAACCTTTCCTTTGTTGAC	0.433													10	132					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404131	20404131	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20404131C>T	uc001vwj.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CCCAGATATTCGTTCTTCACA	0.413													6	56					0	0	1	0	0
OR4K14	122740	broad.mit.edu	37	14	20482780	20482780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20482780C>T	uc010tky.1	-	1	573	c.573G>A	c.(571-573)ATG>ATA	p.M191I		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CATAGGTGTCCATGCAGGCAA	0.483													4	82					0	0	1	0	0
OR4N5	390437	broad.mit.edu	37	14	20612411	20612411	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20612411C>T	uc010tla.1	+	1	517	c.517C>T	c.(517-519)CAG>TAG	p.Q173*		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TGGCCCAAACCAGCTCGATAA	0.502													9	71					0	0	1	0	0
TTC5	91875	broad.mit.edu	37	14	20763873	20763873	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20763873C>T	uc001vwt.2	-	7	894	c.837G>A	c.(835-837)GAG>GAA	p.E279E	TTC5_uc001vwu.2_Silent_p.E136E	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	279					DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		TTACCTTACTCTCAAGGAGGC	0.453													5	87					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20846559	20846559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:20846559C>T	uc001vxe.2	-	38	5528	c.5488G>A	c.(5488-5490)GAT>AAT	p.D1830N	TEP1_uc010ahk.2_Missense_Mutation_p.D1173N|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.D1722N|TEP1_uc010tlh.1_Missense_Mutation_p.D168N	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1830	WD 5.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TTGAGCCCATCCACCTGGAAG	0.582													4	73					0	0	1	0	0
ANG	283	broad.mit.edu	37	14	21162055	21162055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:21162055C>T	uc001vxw.3	+	2	932	c.332C>T	c.(331-333)TCC>TTC	p.S111F	RNASE4_uc001vxx.3_Intron|RNASE4_uc001vxy.3_Intron|ANG_uc001vxz.2_Missense_Mutation_p.S111F|RNASE4_uc001vya.2_Intron	NM_001145	NP_001136	P03950	ANGI_HUMAN	angiogenin, ribonuclease, RNase A family, 5	111					actin filament polymerization|activation of phospholipase A2 activity|activation of phospholipase C activity|activation of protein kinase B activity|angiogenesis|cell communication|cell death|cell migration|diacylglycerol biosynthetic process|homeostatic process|negative regulation of smooth muscle cell proliferation|negative regulation of translation|oocyte maturation|ovarian follicle development|placenta development|positive regulation of endothelial cell proliferation|positive regulation of phosphorylation|positive regulation of protein secretion|response to hormone stimulus|response to hypoxia|rRNA transcription	angiogenin-PRI complex|basal lamina|extracellular space|growth cone|neuronal cell body|nucleolus	actin binding|copper ion binding|heparin binding|pancreatic ribonuclease activity|peptide binding|receptor binding|rRNA binding			ovary(1)	1	all_cancers(95;0.00387)	all_cancers(140;0.196)|all_epithelial(140;0.156)	Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	OV - Ovarian serous cystadenocarcinoma(311;3.25e-17)|GBM - Glioblastoma multiforme(265;5.56e-07)		CATGGAGGTTCCCCCTGGCCT	0.478													10	97					0	0	1	0	0
NDRG2	57447	broad.mit.edu	37	14	21490309	21490309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:21490309C>T	uc001vyy.2	-	6	406	c.256G>A	c.(256-258)GAG>AAG	p.E86K	NDRG2_uc010tll.1_Missense_Mutation_p.E82K|NDRG2_uc001vyt.2_5'UTR|NDRG2_uc001vyu.2_Missense_Mutation_p.E72K|NDRG2_uc001vyv.2_Missense_Mutation_p.E72K|NDRG2_uc001vyw.2_Missense_Mutation_p.E72K|NDRG2_uc001vzb.2_Missense_Mutation_p.E26K|NDRG2_uc001vyx.2_Missense_Mutation_p.E86K|NDRG2_uc001vza.2_Missense_Mutation_p.E72K|NDRG2_uc001vyz.2_Missense_Mutation_p.E72K|NDRG2_uc001vzc.2_Missense_Mutation_p.E72K|NDRG2_uc001vze.2_Missense_Mutation_p.E86K|NDRG2_uc001vzd.2_Missense_Mutation_p.E86K|NDRG2_uc001vzg.2_Missense_Mutation_p.E72K|NDRG2_uc001vzf.2_Missense_Mutation_p.E72K|NDRG2_uc010aig.2_Missense_Mutation_p.E86K	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	86					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TGCATGTCCTCGAACTGAAAC	0.493													9	85					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793142	21793142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:21793142G>A	uc001wag.2	+	14	2128	c.2128G>A	c.(2128-2130)GAA>AAA	p.E710K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E352K|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.E175K|RPGRIP1_uc001wak.2_Missense_Mutation_p.E185K|RPGRIP1_uc010aim.2_Missense_Mutation_p.E93K|RPGRIP1_uc001wal.2_Missense_Mutation_p.E69K|RPGRIP1_uc001wam.2_Missense_Mutation_p.E27K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	710					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CATGGCCAGTGAACACAGCAC	0.512													11	146					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21993042	21993042	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:21993042A>G	uc001wbe.2	-	2	1102	c.820T>C	c.(820-822)TTC>CTC	p.F274L	SALL2_uc010tly.1_Missense_Mutation_p.F272L|SALL2_uc010tlz.1_Missense_Mutation_p.F137L|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.F139L|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	274							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		AGGTGGAAGAAGGCCTGCTTG	0.522													3	43					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21993543	21993543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:21993543G>A	uc001wbe.2	-	2	601	c.319C>T	c.(319-321)CCC>TCC	p.P107S	SALL2_uc010tly.1_Missense_Mutation_p.P105S|SALL2_uc010tlz.1_Missense_Mutation_p.P105S|SALL2_uc001wbf.3_Missense_Mutation_p.P105S|SALL2_uc010tma.1_Missense_Mutation_p.P107S|SALL2_uc001wbg.1_Missense_Mutation_p.P107S	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	107							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GGATCCGTGGGCACGGAGGAC	0.637													13	82					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133558	22133558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:22133558G>A	uc010tmd.1	+	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTTGCTTTTAGAAAGAAAGAC	0.443													16	201					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22180973	22180973	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:22180973G>A	uc010tme.1	+	3		c.292G>A			uc001wbm.2_Missense_Mutation_p.R82Q					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		CAGCAGGGACGATACAACATG	0.512													13	166					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22192421	22192421	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:22192421C>T	uc001wbn.2	+	2		c.324C>T								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		CCTCCAGTTCCTTCTGAAATA	0.448													10	70					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235881	23235881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23235881G>A	uc001wgn.2	+	1	151	c.151G>A	c.(151-153)GGC>AGC	p.G51S	OXA1L_uc010tnc.1_Missense_Mutation_p.G51S|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.G51S|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		TTACTGCGCAGGCGCAAAAGC	0.577													15	150					0	0	1	0	0
SLC7A7	9056	broad.mit.edu	37	14	23282371	23282371	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23282371C>T	uc001wgr.3	-	2	375	c.237G>A	c.(235-237)GGG>GGA	p.G79G	SLC7A7_uc001wgs.3_Silent_p.G79G|SLC7A7_uc001wgt.3_Silent_p.G79G|SLC7A7_uc001wgu.3_Silent_p.G79G|SLC7A7_uc001wgv.3_Silent_p.G79G	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	79	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		AGAAGAGGCCCCCGACAGCCC	0.552													12	120					0	0	1	0	0
RBM23	55147	broad.mit.edu	37	14	23371420	23371420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23371420G>A	uc001whg.2	-	11	1301	c.1102C>T	c.(1102-1104)CAG>TAG	p.Q368*	RBM23_uc001whh.2_Nonsense_Mutation_p.Q352*|RBM23_uc001whi.2_Nonsense_Mutation_p.Q334*|RBM23_uc010tne.1_Nonsense_Mutation_p.Q198*|RBM23_uc001whj.2_Nonsense_Mutation_p.Q118*	NM_001077351	NP_001070819	Q86U06	RBM23_HUMAN	RNA binding motif protein 23 isoform 1	368					mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.0128)		GCCATGAGCTGAAAACGTCCA	0.498													6	104					0	0	1	0	0
CDH24	64403	broad.mit.edu	37	14	23519086	23519086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23519086G>A	uc001wil.2	-	10	1804	c.1544C>T	c.(1543-1545)CCC>CTC	p.P515L	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Missense_Mutation_p.P477L	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	515	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		AGCCAGCTGGGGAGCATTGTC	0.582													6	71					0	0	1	0	0
HOMEZ	57594	broad.mit.edu	37	14	23746302	23746302	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23746302A>T	uc001wja.2	-	2	283	c.135T>A	c.(133-135)CCT>CCA	p.P45P	HOMEZ_uc001wjb.2_Silent_p.P47P	NM_020834	NP_065885	Q8IX15	HOMEZ_HUMAN	homeodomain leucine zipper protein	45						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CAGAGATTGGAGGGAGGCAGA	0.532													3	40					0	0	1	0	0
BCL2L2	599	broad.mit.edu	37	14	23778167	23778167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23778167G>A	uc001wjg.3	+	4	763	c.575G>A	c.(574-576)AGC>AAC	p.S192N	PABPN1_uc001wjh.3_Intron|BCL2L2_uc001wji.3_Missense_Mutation_p.S192N	NM_004050	NP_004041	Q92843	B2CL2_HUMAN	BCL2-like 2 protein	192					anti-apoptosis|apoptosis|spermatogenesis	mitochondrial membrane	protein binding			central_nervous_system(1)	1	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00654)		TTTTTTGCTAGCAAGTGAAAG	0.622													3	40					0	0	1	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817754	23817754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23817754C>T	uc001wjl.2	-	4	709	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	SLC22A17_uc010akk.2_5'UTR|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.R218Q	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	218					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		GGTGATCATTCGCTGTAGGAA	0.572													26	151					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23857013	23857013	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23857013G>A	uc001wjv.2	-	31	4546	c.4479C>T	c.(4477-4479)TCC>TCT	p.S1493S		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1493	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GGTGCTCCAGGGACTCCTCGT	0.582													12	180					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23862722	23862722	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23862722C>T	uc001wjv.2	-	23	3001	c.2934G>A	c.(2932-2934)AAG>AAA	p.K978K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	978	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTGTTAGGTTCTTCACCTGCC	0.532													23	274					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23863396	23863396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23863396C>T	uc001wjv.2	-	21	2633	c.2566G>A	c.(2566-2568)GAA>AAA	p.E856K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	856	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCGAACTCTTCCTTCATGGTG	0.562													9	152					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23868229	23868229	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23868229G>A	uc001wjv.2	-	15	1666	c.1599C>T	c.(1597-1599)TCC>TCT	p.S533S		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	533	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCTCCAGGATGGACATGATGC	0.552													4	101					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23872633	23872633	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23872633C>T	uc001wjv.2	-	10	889	c.822G>A	c.(820-822)GTG>GTA	p.V274V	MYH6_uc010akp.1_Silent_p.V274V	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	274	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCTGGAAGATCACCCGGGACT	0.567													14	201					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23893122	23893122	+	Silent	SNP	C	T	T	rs141191984		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:23893122C>T	uc001wjx.2	-	23	3022	c.2916G>A	c.(2914-2916)GAG>GAA	p.E972E		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	972	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTACCTTGTTCTCTGTTGCGT	0.547													13	85					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24524794	24524794	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:24524794G>A	uc001wlj.2	+	9	805	c.648G>A	c.(646-648)TGG>TGA	p.W216*		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	216										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		ACAACCAGTGGTTCACCAAAC	0.577													27	209					0	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24789026	24789026	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:24789026G>A	uc001wov.2	-	21	2661	c.2655C>T	c.(2653-2655)TTC>TTT	p.F885F	ADCY4_uc001wow.2_Silent_p.F885F|ADCY4_uc010toh.1_Silent_p.F571F|ADCY4_uc001wox.2_Silent_p.F885F|ADCY4_uc001woy.2_Silent_p.F885F	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	885	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		ATTCAGAGTAGAACTCCTTGA	0.488													5	88					0	0	1	0	0
KHNYN	23351	broad.mit.edu	37	14	24905653	24905653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:24905653G>A	uc001wph.3	+	7	1947	c.1745G>A	c.(1744-1746)CGA>CAA	p.R582Q	KHNYN_uc010tpc.1_Missense_Mutation_p.R623Q|KHNYN_uc010alw.2_Missense_Mutation_p.R582Q	NM_015299	NP_056114	O15037	KHNYN_HUMAN	hypothetical protein LOC23351	582										ovary(2)|liver(1)	3						CCACTGGGGCGAAACGGCCCC	0.567											OREG0022628	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	69					0	0	1	0	0
NOVA1	4857	broad.mit.edu	37	14	26917712	26917712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:26917712C>T	uc001wpy.2	-	5	1295	c.977G>A	c.(976-978)GGA>GAA	p.G326E	NOVA1_uc001wpz.2_Missense_Mutation_p.G302E|NOVA1_uc001wqa.2_Missense_Mutation_p.G204E	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	329	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GAGATTATATCCATAGCTGGC	0.318													4	33					0	0	1	0	0
SLC25A21	89874	broad.mit.edu	37	14	37153956	37153956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:37153956C>T	uc001wtz.1	-	8	1088	c.778G>A	c.(778-780)GAA>AAA	p.E260K		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	260	Solcar 3.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		TACCCTTCTTCCTGATAGACT	0.393													7	154					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39716429	39716429	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:39716429T>C	uc001wux.2	+	4	845	c.651T>C	c.(649-651)TCT>TCC	p.S217S	MIA2_uc010amy.1_Silent_p.S148S	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	217						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TCCCACCATCTTCAGCTGTGT	0.423													7	71					0	0	1	0	0
FANCM	57697	broad.mit.edu	37	14	45618069	45618069	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:45618069A>G	uc001wwd.3	+	4	888	c.789A>G	c.(787-789)CTA>CTG	p.L263L	FANCM_uc001wwc.2_Silent_p.L263L|FANCM_uc010anf.2_Silent_p.L237L	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	263	Helicase ATP-binding.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						CTAACCTGCTAATTGGGCAGA	0.313								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				5	57					0	0	1	0	0
SOS2	6655	broad.mit.edu	37	14	50606768	50606768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:50606768C>T	uc001wxs.3	-	17	2775	c.2677G>A	c.(2677-2679)GAA>AAA	p.E893K	SOS2_uc010tql.1_Missense_Mutation_p.E860K|SOS2_uc010tqm.1_RNA	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	893	Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					CTTTTCCTTTCCTGCAGTGCC	0.274													4	32					0	0	1	0	0
FERMT2	10979	broad.mit.edu	37	14	53360117	53360117	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:53360117G>A	uc001xad.2	-	4	475	c.420C>T	c.(418-420)CTC>CTT	p.L140L	FERMT2_uc001xac.2_Silent_p.L140L|FERMT2_uc001xae.2_Silent_p.L140L|FERMT2_uc001xaf.2_Silent_p.L140L	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	140					actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					GTTTCTTTAAGAGAGAAAGTT	0.343													5	62					0	0	1	0	0
TBPL2	387332	broad.mit.edu	37	14	55895620	55895620	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:55895620G>A	uc001xby.2	-	5	861	c.861C>T	c.(859-861)TTC>TTT	p.F287F		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	287					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						TAAAATCGAGGAATCTGGCAG	0.463													5	127					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59112896	59112896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:59112896C>T	uc001xdw.2	+	4	1719	c.1555C>T	c.(1555-1557)CCC>TCC	p.P519S	DACT1_uc010trv.1_Missense_Mutation_p.P238S|DACT1_uc001xdx.2_Missense_Mutation_p.P482S|DACT1_uc010trw.1_Missense_Mutation_p.P238S	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	519					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						GCAGGGCGTCCCCCCGGCCAC	0.587													10	135					0	0	1	0	0
C14orf39	317761	broad.mit.edu	37	14	60903661	60903661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:60903661G>A	uc001xez.3	-	18	1776	c.1666C>T	c.(1666-1668)CCA>TCA	p.P556S	C14orf39_uc010apo.2_Missense_Mutation_p.P267S	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	556										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		AATGAAAATGGAAAACTAAAA	0.338													17	145					0	0	1	0	0
C14orf39	317761	broad.mit.edu	37	14	60923639	60923639	+	Missense_Mutation	SNP	C	T	T	rs147627198		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:60923639C>T	uc001xez.3	-	15	1464	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	C14orf39_uc010apo.2_Missense_Mutation_p.E163K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	452								p.E452K(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCCTACATTTCGAACGGGGGG	0.318													9	103					0	0	1	0	0
PRKCH	5583	broad.mit.edu	37	14	61919967	61919967	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:61919967C>T	uc001xfn.2	+	7	1161	c.856C>T	c.(856-858)CGA>TGA	p.R286*	PRKCH_uc010tsa.1_Nonsense_Mutation_p.R125*	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	286	Phorbol-ester/DAG-type 2.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		TGTGCATATTCGATGTCAAGC	0.448													4	90					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174967	63174967	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:63174967C>T	uc001xfx.2	-	11	2277	c.2226G>A	c.(2224-2226)CAG>CAA	p.Q742Q	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	742	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AGGCTCCATTCTGTAAGGAGC	0.532													9	62					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63175041	63175041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:63175041C>T	uc001xfx.2	-	11	2203	c.2152G>A	c.(2152-2154)GAG>AAG	p.E718K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	718	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTCCGCAGCTCCTTCTGCTGC	0.577													6	118					0	0	1	0	0
WDR89	112840	broad.mit.edu	37	14	64066643	64066643	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:64066643T>A	uc001xgh.2	-	3	264	c.18A>T	c.(16-18)GAA>GAT	p.E6D	WDR89_uc001xgi.2_Missense_Mutation_p.E6D	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	6											0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		TAGCAAATTGTTCCTCAATCT	0.353													3	65					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64675564	64675564	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:64675564G>C	uc001xgm.2	+	101	18520	c.18290G>C	c.(18289-18291)TGT>TCT	p.C6097S	SYNE2_uc001xgl.2_Missense_Mutation_p.C6097S|SYNE2_uc010apy.2_Missense_Mutation_p.C2482S|SYNE2_uc001xgn.2_Missense_Mutation_p.C1059S|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.C67S|SYNE2_uc001xgq.2_Missense_Mutation_p.C462S|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6097	Cytoplasmic (Potential).|Spectrin 6.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TCCGATGCCTGTGCAAATGAG	0.537													3	49					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64692100	64692100	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:64692100C>T	uc001xgm.2	+	115	20744	c.20514C>T	c.(20512-20514)CCC>CCT	p.P6838P	SYNE2_uc001xgl.2_Silent_p.P6860P|SYNE2_uc010apy.2_Silent_p.P3223P|SYNE2_uc001xgn.2_Silent_p.P1799P|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Silent_p.P808P|SYNE2_uc001xgq.2_Silent_p.P1217P|SYNE2_uc001xgr.2_Silent_p.P621P|SYNE2_uc010tsi.1_Silent_p.P495P|SYNE2_uc001xgs.2_Silent_p.P509P|SYNE2_uc001xgt.2_Silent_p.P382P	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6838	Helical; Anchor for type IV membrane protein; (Potential).|KASH.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CAGCCCTACCCctgcagctgc	0.488													8	43					0	0	1	0	0
ESR2	2100	broad.mit.edu	37	14	64749412	64749412	+	Silent	SNP	G	A	A	rs139503857		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:64749412G>A	uc001xha.1	-	2	760	c.292C>T	c.(292-294)CTG>TTG	p.L98L	ESR2_uc001xgu.2_Silent_p.L98L|ESR2_uc001xgv.2_Silent_p.L98L|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Silent_p.L98L|ESR2_uc001xgy.1_Silent_p.L98L|ESR2_uc001xgz.1_Silent_p.L98L|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Silent_p.L98L	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	98	Modulating.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	TCCGCATACAGATGTGATAAC	0.493													6	79					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65252542	65252542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:65252542G>A	uc001xht.2	-	16	3743	c.3689C>T	c.(3688-3690)TCT>TTT	p.S1230F	SPTB_uc001xhr.2_Missense_Mutation_p.S1230F|SPTB_uc001xhs.2_Missense_Mutation_p.S1230F|SPTB_uc001xhu.2_Missense_Mutation_p.S1230F	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1230	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTTGTTTCCAGAGTCCACAGG	0.547													26	214					0	0	1	0	0
RDH11	51109	broad.mit.edu	37	14	68157131	68157131	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:68157131G>A	uc001xjv.3	-	5	552	c.462C>T	c.(460-462)TTC>TTT	p.F154F	RDH11_uc001xjw.3_Silent_p.F141F|RDH11_uc001xjx.3_Intron	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	154	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	GGGTTAGGAGGAAGTGACCTG	0.478													7	111					0	0	1	0	0
ZFP36L1	677	broad.mit.edu	37	14	69256856	69256856	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:69256856G>A	uc001xkh.1	-	2	541	c.411C>T	c.(409-411)TTC>TTT	p.F137F	ZFP36L1_uc001xki.1_Silent_p.F137F	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	137	C3H1-type 1.				regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGCCGTGTGCGAACTGGCACT	0.647											OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	217					0	0	1	0	0
DCAF5	8816	broad.mit.edu	37	14	69520803	69520804	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:69520803_69520804GT>AC	uc001xkp.2	-	9	2818_2819	c.2599_2600AC>GT	c.(2599-2601)ACT>GTT	p.T867V	DCAF5_uc001xkq.2_Missense_Mutation_p.T866V	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	867						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						ATCACGGTCAGTGTCTGAGTGT	0.564													9	63					0	0	1	0	0
GALNTL1	57452	broad.mit.edu	37	14	69805411	69805411	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:69805411C>T	uc010aqu.1	+	10	1104	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	GALNTL1_uc001xla.1_Silent_p.I337I|GALNTL1_uc001xlb.1_Silent_p.I337I	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	337	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		GTCTGGAGATCGTCCCCTGCA	0.572													5	146					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633754	70633754	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:70633754C>T	uc001xly.2	-	2	2140	c.1386G>A	c.(1384-1386)AAG>AAA	p.K462K	SLC8A3_uc001xlw.2_Silent_p.K462K|SLC8A3_uc001xlx.2_Silent_p.K462K|SLC8A3_uc001xlz.2_Silent_p.K462K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	462	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CGGAGAACTCCTTCTGGGTCT	0.502													19	183					0	0	1	0	0
COX16	51241	broad.mit.edu	37	14	70795947	70795947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:70795947G>A	uc001xmb.2	-	3	288	c.148C>T	c.(148-150)CCT>TCT	p.P50S		NM_016468	NP_057552	Q9P0S2	COX16_HUMAN	COX16 cytochrome c oxidase assembly homolog	50						integral to membrane|mitochondrial membrane					0						TCAAGCTCAGGATCCATCTGT	0.294													6	31					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055841	72055841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:72055841C>T	uc001xms.2	+	2	1600	c.1252C>T	c.(1252-1254)CGG>TGG	p.R418W	SIPA1L1_uc001xmt.2_Missense_Mutation_p.R418W|SIPA1L1_uc001xmu.2_Missense_Mutation_p.R418W|SIPA1L1_uc001xmv.2_Missense_Mutation_p.R418W	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	418					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TCCATATTTTCGGAATGAGAT	0.463													5	44					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72921268	72921268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:72921268C>T	uc001xna.3	+	4	740	c.217C>T	c.(217-219)CTT>TTT	p.L73F	RGS6_uc010ttn.1_Missense_Mutation_p.L73F|RGS6_uc001xmx.3_Missense_Mutation_p.L73F|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.L73F|RGS6_uc010ttp.1_Missense_Mutation_p.L4F|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	73	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		TATGAAGAACCTTTCCATTGA	0.463													16	141					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73719404	73719404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:73719404C>T	uc010ttx.1	+	10	1178	c.1015C>T	c.(1015-1017)CCC>TCC	p.P339S	PAPLN_uc001xnw.3_Missense_Mutation_p.P312S|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.P339S	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	339	TSP type-1 2.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		TGAGGCCTACCCCGACCACAT	0.612													9	168					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73720567	73720567	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:73720567C>T	uc010ttx.1	+	11	1363	c.1200C>T	c.(1198-1200)GCC>GCT	p.A400A	PAPLN_uc001xnw.3_Silent_p.A373A|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Silent_p.A400A	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	400	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		TCCAGGAGGCCGTGGAGGAGG	0.697													5	67					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824907	74824907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:74824907C>T	uc001xpw.3	+	2	1612	c.1421C>T	c.(1420-1422)CCT>CTT	p.P474L		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	474					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GCTGTAATTCCTTGGAAGAGT	0.652													10	86					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824910	74824910	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:74824910G>A	uc001xpw.3	+	2	1615	c.1424G>A	c.(1423-1425)TGG>TAG	p.W475*		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	475					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GTAATTCCTTGGAAGAGTGAG	0.652													8	90					0	0	1	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874367	74874367	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:74874367G>A	uc001xpx.2	-	4	836	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	196					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		TGGCCAGGCGGAAGTCCCCTT	0.662													14	161					0	0	1	0	0
TGFB3	7043	broad.mit.edu	37	14	76429781	76429781	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:76429781C>T	uc001xsc.2	-	5	1660	c.804G>A	c.(802-804)AAG>AAA	p.K268K	TGFB3_uc001xsd.2_Silent_p.K266K	NM_003239	NP_003230	P10600	TGFB3_HUMAN	transforming growth factor, beta 3 precursor	268					cell growth|cell-cell junction organization|detection of hypoxia|face morphogenesis|in utero embryonic development|induction of apoptosis|lung alveolus development|mammary gland development|menstrual cycle phase|negative regulation of cell proliferation|negative regulation of DNA replication|negative regulation of macrophage cytokine production|negative regulation of neuron apoptosis|odontogenesis|ossification involved in bone remodeling|palate development|platelet activation|platelet degranulation|positive regulation of bone mineralization|positive regulation of cell division|positive regulation of collagen biosynthetic process|positive regulation of DNA replication|positive regulation of epithelial to mesenchymal transition|positive regulation of filopodium assembly|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of protein secretion|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|response to progesterone stimulus|salivary gland morphogenesis|transforming growth factor beta receptor signaling pathway	extracellular matrix|platelet alpha granule lumen	growth factor activity|identical protein binding|transforming growth factor beta binding|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0169)		CCTTCTGCTTCTTGAGGCGCC	0.572													15	136					0	0	1	0	0
ESRRB	2103	broad.mit.edu	37	14	76906017	76906017	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:76906017G>A	uc001xsq.1	+	2	388	c.321G>A	c.(319-321)GGG>GGA	p.G107G	ESRRB_uc001xsr.2_Silent_p.G107G|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	107						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		TCGTGTGCGGGGACATTGCCT	0.617													9	46					0	0	1	0	0
ANGEL1	23357	broad.mit.edu	37	14	77272821	77272821	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:77272821A>T	uc001xsv.2	-	5	1431	c.1318T>A	c.(1318-1320)TCA>ACA	p.S440T	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	440										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TAGAGAGGTGAATCAGGGACA	0.567													9	66					0	0	1	0	0
C14orf166B	145497	broad.mit.edu	37	14	77294741	77294741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:77294741G>A	uc001xsx.2	+	2	310	c.196G>A	c.(196-198)GAA>AAA	p.E66K	C14orf166B_uc010asn.1_5'UTR|C14orf166B_uc001xsw.2_RNA|C14orf166B_uc010aso.1_RNA|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_5'Flank	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	66											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		GGAGAATTCGGAAACAGACCT	0.522													14	113					0	0	1	0	0
C14orf166B	145497	broad.mit.edu	37	14	77327087	77327087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:77327087G>A	uc001xsx.2	+	11	1270	c.1156G>A	c.(1156-1158)GTT>ATT	p.V386I	C14orf166B_uc010asn.1_Missense_Mutation_p.V146I|C14orf166B_uc001xsw.2_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	386											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		AGTGTATGCCGTTCACCCGCA	0.532													9	100					0	0	1	0	0
C14orf166B	145497	broad.mit.edu	37	14	77333740	77333740	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:77333740G>A	uc001xsx.2	+	13	1515	c.1401G>A	c.(1399-1401)GTG>GTA	p.V467V	C14orf166B_uc010asn.1_Silent_p.V227V|C14orf166B_uc001xsw.2_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	467											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		TCAGGGAGGTGATAAAGAAGC	0.567													9	50					0	0	1	0	0
NGB	58157	broad.mit.edu	37	14	77732921	77732921	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:77732921C>T	uc001xtg.1	-	4	789	c.414G>A	c.(412-414)GGG>GGA	p.G138G		NM_021257	NP_067080	Q9NPG2	NGB_HUMAN	neuroglobin	138	Globin.					hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0273)		GCACTACGGCCCCGTAGAGTT	0.627													6	82					0	0	1	0	0
ALKBH1	8846	broad.mit.edu	37	14	78140264	78140264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:78140264G>A	uc001xuc.1	-	6	1070	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	354					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GGGTTCTAGAGGGAAATTCTG	0.498													7	73					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81745046	81745046	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:81745046C>T	uc010tvu.1	-	4	810	c.609G>A	c.(607-609)GAG>GAA	p.E203E	STON2_uc001xvk.1_Silent_p.E203E|STON2_uc010tvt.1_5'UTR	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	203					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGGCCTCCATCTCTACTTCTT	0.512													4	70					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81837505	81837505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:81837505C>T	uc010tvu.1	-	3	599	c.398G>A	c.(397-399)TGG>TAG	p.W133*	STON2_uc001xvk.1_Nonsense_Mutation_p.W133*	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	133					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGGCATGTCCAGCAGGGCAT	0.468													12	85					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86087876	86087876	+	Silent	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:86087876A>C	uc001xvr.2	+	2	785	c.18A>C	c.(16-18)ACA>ACC	p.T6T	FLRT2_uc010atd.2_Silent_p.T6T	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	6					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TACAGACCACAAAGTGGCCCA	0.433													12	51					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088099	86088099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:86088099C>T	uc001xvr.2	+	2	1008	c.241C>T	c.(241-243)CCT>TCT	p.P81S	FLRT2_uc010atd.2_Missense_Mutation_p.P81S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	81	Extracellular (Potential).|LRR 1.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGCTGGATTTCCTGCAGAACT	0.488													11	170					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88477392	88477392	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:88477392C>T	uc001xvv.2	+	2	731	c.201C>T	c.(199-201)CTC>CTT	p.L67L		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	67	Helical; Name=2; (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						CATTAACTCTCCCTTTATGGA	0.388													11	92					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90650488	90650488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:90650488G>A	uc001xye.1	+	2	810	c.368G>A	c.(367-369)GGA>GAA	p.G123E		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	123						integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				ACAGTAGGAGGAAAAATCTTT	0.483													6	124					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92076824	92076824	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:92076824C>T	uc001xzs.1	-	21	2738	c.2598G>A	c.(2596-2598)CCG>CCA	p.P866P	CATSPERB_uc010aub.1_Silent_p.P388P	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	866					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TTTTTTTTACCGGCAAAGTTT	0.358													3	53					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136247	92136247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:92136247G>A	uc001xzs.1	-	14	1338	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	400					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CGAAAAATTGGAAATTTTGAT	0.408													10	90					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92191504	92191504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:92191504C>T	uc001xzs.1	-	3	228	c.88G>A	c.(88-90)GAG>AAG	p.E30K		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	30					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AAGCGTTTCTCTGTATCATCT	0.289													3	32					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94079155	94079155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94079155C>T	uc001ybv.1	+	25	3385	c.3302C>T	c.(3301-3303)CCT>CTT	p.P1101L	KIAA1409_uc001ybs.1_Missense_Mutation_p.P1079L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1256						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CAACAATCTCCTGAGAATGAC	0.483													10	125					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94120311	94120311	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94120311C>T	uc001ybv.1	+	36	5957	c.5874C>T	c.(5872-5874)GCC>GCT	p.A1958A	KIAA1409_uc001ybs.1_Silent_p.A1936A	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2113						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGACCTTAGCCTCGTCTCTGA	0.507													12	193					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94394920	94394920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94394920G>A	uc001ybz.1	+	3	782	c.475G>A	c.(475-477)GAG>AAG	p.E159K	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.E97K|FAM181A_uc001yca.1_Missense_Mutation_p.E97K	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	159											0						GGGCTGCAAGGAGAAGGTGCT	0.642													8	43					0	0	1	0	0
ASB2	51676	broad.mit.edu	37	14	94420665	94420665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94420665C>T	uc001ycc.1	-	2	821	c.332G>A	c.(331-333)CGA>CAA	p.R111Q	ASB2_uc001ycd.2_Missense_Mutation_p.R159Q|ASB2_uc001yce.1_Missense_Mutation_p.R57Q	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	111	ANK 2.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		GCCCTCACCTCGCTGCAGGAC	0.612													7	132					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94731788	94731788	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94731788C>T	uc001ycs.1	+	21	2416	c.2262C>T	c.(2260-2262)CCC>CCT	p.P754P		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	754						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TTCCTGGACCCTCTTCTGTCA	0.358													9	79					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756345	94756345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94756345G>A	uc001yct.2	-	2	1052	c.586C>T	c.(586-588)CGC>TGC	p.R196C	SERPINA10_uc001ycu.3_Missense_Mutation_p.R196C	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	196					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GAGGCATTGCGAAAATTCATA	0.398													12	107					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94776174	94776174	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94776174C>T	uc001ycv.2	-	3	887	c.783G>A	c.(781-783)GGG>GGA	p.G261G	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	261					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	AGAAGACAGTCCCATTGCCCA	0.562													8	125					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912697	94912697	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94912697C>T	uc001ydd.1	-	3	948	c.888G>A	c.(886-888)CTG>CTA	p.L296L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	296					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CCCATTTTCTCAGGGTCTGTG	0.562													5	102					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912840	94912840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94912840C>T	uc001ydd.1	-	3	805	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	249					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CTGTGCATTTCCTTTTGGTGC	0.527													9	91					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933591	94933591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94933591C>T	uc001ydf.2	-	3	972	c.811G>A	c.(811-813)GAG>AAG	p.E271K	SERPINA9_uc001yde.2_Missense_Mutation_p.E171K|SERPINA9_uc010avc.2_Missense_Mutation_p.E122K|SERPINA9_uc001ydg.2_Missense_Mutation_p.E235K|SERPINA9_uc001ydh.1_Missense_Mutation_p.E271K|SERPINA9_uc001ydi.1_Missense_Mutation_p.E235K	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	253					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CAGTTCAGCTCTGTATCCACC	0.517													5	50					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935574	94935574	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94935574G>A	uc001ydf.2	-	2	819	c.658C>T	c.(658-660)CTG>TTG	p.L220L	SERPINA9_uc001yde.2_Silent_p.L120L|SERPINA9_uc010avc.2_Silent_p.L71L|SERPINA9_uc001ydg.2_Silent_p.L184L|SERPINA9_uc001ydh.1_Silent_p.L220L|SERPINA9_uc001ydi.1_Silent_p.L184L	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	202					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TGGTTCACCAGAACCATGGCC	0.388													17	100					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935675	94935675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94935675G>A	uc001ydf.2	-	2	718	c.557C>T	c.(556-558)CCC>CTC	p.P186L	SERPINA9_uc001yde.2_Intron|SERPINA9_uc010avc.2_Missense_Mutation_p.P37L|SERPINA9_uc001ydg.2_Missense_Mutation_p.P150L|SERPINA9_uc001ydh.1_Missense_Mutation_p.P186L|SERPINA9_uc001ydi.1_Missense_Mutation_p.P150L	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	168					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		GGCAATGGAGGGGTTGGAGAA	0.498													29	182					0	0	1	0	0
SERPINA12	145264	broad.mit.edu	37	14	94953647	94953647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94953647C>T	uc001ydj.2	-	6	2034	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	413					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		CCTTTATTTTCCAATAGGGTT	0.458													16	122					0	0	1	0	0
SERPINA12	145264	broad.mit.edu	37	14	94964509	94964509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:94964509G>A	uc001ydj.2	-	3	1022	c.226C>T	c.(226-228)CCC>TCC	p.P76S		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	76					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		ATGCTCAAGGGGGATAGGAAG	0.532													18	84					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95035923	95035923	+	Silent	SNP	G	A	A	rs139990252		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:95035923G>A	uc001ydk.2	+	5	1341	c.1275G>A	c.(1273-1275)ACG>ACA	p.T425T	SERPINA4_uc010avd.2_Silent_p.T462T|SERPINA4_uc001ydl.2_Silent_p.T425T	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	425					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity	p.T425T(1)		ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		TCGACCCCACGAAACCATAGC	0.577													8	62					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95057221	95057221	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:95057221C>T	uc001ydm.2	+	5	1236	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	SERPINA3_uc001ydo.3_5'Flank	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	342					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	ACTCAAATATCCAGGTGTCTG	0.403													15	89					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95088736	95088736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:95088736G>A	uc001ydp.2	+	4	1055	c.976G>A	c.(976-978)GAC>AAC	p.D326N	SERPINA3_uc001ydo.3_Missense_Mutation_p.D351N|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.D326N|SERPINA3_uc001yds.2_Missense_Mutation_p.D326N|SERPINA3_uc010avg.2_Missense_Mutation_p.D326N	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	326					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		TAACCTGAACGACATACTTCT	0.498													8	107					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95670765	95670765	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:95670765G>A	uc001yef.2	-	9	1037	c.921C>T	c.(919-921)ATC>ATT	p.I307I		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	307						integral to membrane	actin binding				0				Epithelial(152;0.193)		AAGTGGATTCGATAGGAACTT	0.303													7	52					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707656	96707656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:96707656G>A	uc010avm.1	+	3	1187	c.991G>A	c.(991-993)GTG>ATG	p.V331M	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Missense_Mutation_p.V304M|BDKRB2_uc001yfg.2_Missense_Mutation_p.V331M	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	331	Helical; Name=7; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		CAACCCACTGGTGTACGTGAT	0.572													14	59					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99641494	99641494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:99641494G>A	uc001yga.2	-	4	1946	c.1679C>T	c.(1678-1680)TCG>TTG	p.S560L	BCL11B_uc001ygb.2_Missense_Mutation_p.S489L	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	560						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GCTCAGCTCCGAGTCCATGCT	0.428			T	TLX3	T-ALL								3	8					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723871	99723871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:99723871C>T	uc001yga.2	-	2	631	c.364G>A	c.(364-366)GAC>AAC	p.D122N	BCL11B_uc001ygb.2_Missense_Mutation_p.D122N	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	122						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TCATCTTCGTCGGGGGTGACT	0.602			T	TLX3	T-ALL								13	130					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101350809	101350809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:101350809G>A	uc010txj.1	-	1	376	c.317C>T	c.(316-318)TCA>TTA	p.S106L	MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	106										pancreas(1)	1						TGCCTGGTGTGAACCGTTGCA	0.537													12	64					0	0	1	0	0
SNORD114-22	767600	broad.mit.edu	37	14	101449280	101449280	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:101449280C>T	uc001yjm.2	+	1		c.18C>T				NR_003215				Homo sapiens small nucleolar RNA, C/D box 114-22 (SNORD114-22), non-coding RNA.												0						ATGATGACTACCGGTGGCGTA	0.368													11	111					0	0	1	0	0
SNORD114-31	767612	broad.mit.edu	37	14	101459645	101459645	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:101459645C>T	uc001yjv.2	+	1		c.73C>T				NR_003224				Homo sapiens small nucleolar RNA, C/D box 114-31 (SNORD114-31), non-coding RNA.												0						CTCTGAGGTTCAATATAATAG	0.393													12	49					0	0	1	0	0
MIR299	407023	broad.mit.edu	37	14	101490179	101490179	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:101490179G>A	hsa-mir-299|MI0000744	+			c.49G>A			uc001yjx.1_RNA|uc010awb.1_5'Flank|MIR380_hsa-mir-380|MI0000788_5'Flank|MIR1197_hsa-mir-1197|MI0006656_5'Flank|uc001yjy.1_5'Flank|MIR323_hsa-mir-323|MI0000807_5'Flank|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank																	0						TATGTGGGATGGTAAACCGCT	0.537													20	68					0	0	1	0	0
MIR369	442914	broad.mit.edu	37	14	101531976	101531976	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:101531976C>T	hsa-mir-369|MI0000777	+			c.42C>T			uc010txp.1_RNA|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						TTATTGACTTCGAATAATACA	0.527													8	75					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103440373	103440374	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:103440373_103440374CC>TT	uc001ymi.1	-	12	1852_1853	c.1620_1621GG>AA	c.(1618-1623)CAGGAG>CAAAAG	p.E541K		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	541	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TCCTCCTTCTCCTGCCGGACCA	0.599													6	102					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104641648	104641648	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:104641648C>T	uc001yos.3	+	12	2523	c.2523C>T	c.(2521-2523)TTC>TTT	p.F841F		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	841					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GCAGCACCTTCGCGGAGCTGC	0.697													7	44					0	0	1	0	0
AKT1	207	broad.mit.edu	37	14	105241278	105241278	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:105241278G>A	uc001ypk.2	-	7	1184	c.630C>T	c.(628-630)CTC>CTT	p.L210L	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.L210L|AKT1_uc010axa.2_Silent_p.L210L|AKT1_uc001ypm.2_Silent_p.L210L|AKT1_uc001ypn.2_Silent_p.L210L|AKT1_uc010tyk.1_Silent_p.L148L	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	210	Protein kinase.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	CACTCACTGTGAGGAAGGGGT	0.647		1	Mis		breast|colorectal|ovarian|NSCLC								5	70					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410406	105410406	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:105410406C>T	uc010axc.1	-	7	11502	c.11382G>A	c.(11380-11382)AAG>AAA	p.K3794K	AHNAK2_uc001ypx.2_Silent_p.K3694K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3794						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGTCACATCCTTGTCGGCCA	0.582													87	511					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420374	105420374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:105420374C>T	uc010axc.1	-	7	1534	c.1414G>A	c.(1414-1416)GAA>AAA	p.E472K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E372K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	472						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GTGCCTCCTTCGGTTGTGTCT	0.527													13	66					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420634	105420634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:105420634C>T	uc010axc.1	-	7	1274	c.1154G>A	c.(1153-1155)CGA>CAA	p.R385Q	AHNAK2_uc001ypx.2_Missense_Mutation_p.R285Q	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	385						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CATCACTTCTCGATCCTGTTC	0.632													22	160					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106208432	106208432	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:106208432G>A	uc010tyt.1	-	3627		c.58782C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Silent_p.V22V|uc001ysf.2_Silent_p.V22V					Parts of antibodies, mostly variable regions.												0						AGTTGAACTTGACCTCAGGGT	0.587													31	216					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106236651	106236651	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:106236651G>A	uc010tyt.1	-	3614		c.57554C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGCATGGGGGAGGTGTGTCA	0.647													55	333					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106405705	106405705	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:106405705C>T	uc010tyt.1	-	2358		c.42359G>A								Parts of antibodies, mostly variable regions.												0						GATGGTTATTCGACTTTTCAC	0.493													39	191					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106518648	106518648	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:106518648C>T	uc010tyt.1	-	1630		c.32789G>A								Parts of antibodies, mostly variable regions.												0						CTCAGGGACCCCCCAGGCTGG	0.592													34	161					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106667749	106667749	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:106667749C>T	uc010tyt.1	-	877		c.22116G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCTT	0.562													23	219					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107049075	107049075	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:107049075C>T	uc010tyt.1	-	142		c.6612G>A								Parts of antibodies, mostly variable regions.												0						CATGAATCACCTTTTAAAATA	0.443													27	193					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107199217	107199217	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr14:107199217C>T	uc010tyt.1	-	21		c.1481G>A								Parts of antibodies, mostly variable regions.												0						CCCCAGACTCCACCAGCTGCA	0.572													20	247					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382562	22382562	+	Silent	SNP	G	A	A	rs139049224		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:22382562G>A	uc001yuc.1	+	7	1071	c.90G>A	c.(88-90)CTG>CTA	p.L30L	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.L30L	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L30L(1)		ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTTTGTGCTGATCTTAATTT	0.413													19	130					0	0	1	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23261109	23261109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:23261109G>A	uc001yvh.1	+	9	1083	c.541G>A	c.(541-543)GAG>AAG	p.E181K	uc001yvl.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						AATGTCGCAGGAGGTGAGATC	0.383													19	134					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26793217	26793217	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:26793217G>C	uc001zaz.2	-	9	1287	c.1145C>G	c.(1144-1146)TCA>TGA	p.S382*	GABRB3_uc010uae.1_Nonsense_Mutation_p.S297*|GABRB3_uc001zba.2_Nonsense_Mutation_p.S382*|GABRB3_uc001zbb.2_Nonsense_Mutation_p.S438*	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	382	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AATGCCGCCTGAGACCTCATT	0.468													11	200					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26806257	26806257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:26806257G>A	uc001zaz.2	-	8	1044	c.902C>T	c.(901-903)CCC>CTC	p.P301L	GABRB3_uc010uae.1_Missense_Mutation_p.P216L|GABRB3_uc001zba.2_Missense_Mutation_p.P301L|GABRB3_uc001zbb.2_Missense_Mutation_p.P357L	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	301					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTTGACATAGGGGATTTTGGG	0.463													6	73					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28326952	28326952	+	Silent	SNP	G	A	A	rs138611712	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:28326952G>A	uc001zbh.3	-	2	179	c.69C>T	c.(67-69)TCC>TCT	p.S23S	OCA2_uc010ayv.2_Silent_p.S23S	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	23	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		CGCTGGGCACGGACGTCTGCA	0.711									Oculocutaneous_Albinism				3	30					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28377941	28377941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:28377941C>T	uc001zbj.2	-	80	12372	c.12266G>A	c.(12265-12267)AGA>AAA	p.R4089K		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4089	RCC1 15.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTCAATTCCTCTCAGAGACTC	0.507													15	164					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28377943	28377943	+	Silent	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:28377943C>A	uc001zbj.2	-	80	12370	c.12264G>T	c.(12262-12264)CTG>CTT	p.L4088L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4088	RCC1 15.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAATTCCTCTCAGAGACTCGA	0.498													14	162					1.00905e-13	1.02194e-13	1	1	0
HERC2	8924	broad.mit.edu	37	15	28412933	28412933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:28412933G>A	uc001zbj.2	-	68	10560	c.10454C>T	c.(10453-10455)ACT>ATT	p.T3485I		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3485					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GGCCGACGGAGTCACTGCAGA	0.527													14	74					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28465727	28465727	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:28465727C>A	uc001zbj.2	-	37	5822	c.5716G>T	c.(5716-5718)GTC>TTC	p.V1906F		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1906	MIB/HERC2.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TCCCACTGGACTCTTATCCAT	0.582													16	150					3.99206e-14	4.04407e-14	1	1	0
RYR3	6263	broad.mit.edu	37	15	33954658	33954658	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:33954658T>A	uc001zhi.2	+	35	4997	c.4927T>A	c.(4927-4929)TTC>ATC	p.F1643I	RYR3_uc010bar.2_Missense_Mutation_p.F1643I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1643	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TATCCGCCTCTTCCCGGACGA	0.572													4	38					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34102739	34102739	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:34102739C>T	uc001zhi.2	+	71	10156	c.10086C>T	c.(10084-10086)ATC>ATT	p.I3362I	RYR3_uc010bar.2_Silent_p.I3357I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3362					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGTATTCCATCCAGACCTCCC	0.512													4	44					0	0	1	0	0
PGBD4	161779	broad.mit.edu	37	15	34396264	34396264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:34396264C>T	uc001zho.2	+	1	1991	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	511											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		CGTCCTTGCTCCGATGATGTC	0.488													6	32					0	0	1	0	0
SLC12A6	9990	broad.mit.edu	37	15	34542851	34542851	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:34542851G>A	uc001zhw.2	-	11	1736	c.1572C>T	c.(1570-1572)ATC>ATT	p.I524I	SLC12A6_uc001zhv.2_Silent_p.I473I|SLC12A6_uc001zhx.2_Silent_p.I509I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Silent_p.I465I|SLC12A6_uc001zib.2_Silent_p.I515I|SLC12A6_uc001zic.2_Silent_p.I524I|SLC12A6_uc010bau.2_Silent_p.I524I|SLC12A6_uc001zid.2_Silent_p.I465I|SLC12A6_uc001zht.2_5'Flank|SLC12A6_uc001zhu.2_Silent_p.I336I	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	524	Helical; (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	AGGTGGTCAGGATGGCAAGGA	0.413													6	75					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39885209	39885209	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:39885209C>T	uc001zkh.2	+	18	2955	c.2776C>T	c.(2776-2778)CGA>TGA	p.R926*	THBS1_uc010bbi.2_Nonsense_Mutation_p.R398*	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	926	TSP type-3 8.|Cell attachment site (Probable).				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AGGCGATGGTCGAGGTGATGC	0.433													5	41					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42280266	42280266	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:42280266C>T	uc001zow.1	-	15	1725	c.1725G>A	c.(1723-1725)AGG>AGA	p.R575R	PLA2G4E_uc010udc.1_Silent_p.R47R|PLA2G4E_uc001zov.1_Silent_p.R228R	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	592	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		GCACTTTCTCCCTTGTCCACC	0.622													6	25					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42299962	42299962	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:42299962C>A	uc001zow.1	-	2	271	c.271G>T	c.(271-273)GAA>TAA	p.E91*		NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	102	C2.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		TTGAAGCTTTCATTCCACTCT	0.537													4	25					0.184627	0.184948	1	1	0
PLA2G4F	255189	broad.mit.edu	37	15	42436648	42436648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:42436648C>T	uc001zoz.2	-	17	2038	c.1975G>A	c.(1975-1977)GAC>AAC	p.D659N	PLA2G4F_uc010bcq.2_Silent_p.K11K|PLA2G4F_uc001zoy.2_Missense_Mutation_p.D291N|PLA2G4F_uc010bcr.2_Missense_Mutation_p.D410N|PLA2G4F_uc001zpa.2_Missense_Mutation_p.D410N|PLA2G4F_uc010bcs.2_Missense_Mutation_p.D446N	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	659	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		CAGCACCCACCTTTCCAGGCC	0.617													5	57					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43067835	43067835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:43067835G>A	uc001zqo.2	-	13	1935	c.1496C>T	c.(1495-1497)TCC>TTC	p.S499F	TTBK2_uc010bcy.2_Missense_Mutation_p.S430F	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	499					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GTCAGTACGGGACACAGCAGG	0.507													5	119					0	0	1	0	0
UBR1	197131	broad.mit.edu	37	15	43269030	43269030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:43269030C>T	uc001zqq.2	-	39	4320	c.4254G>A	c.(4252-4254)TGG>TGA	p.W1418*		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1418					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CAGGGTCATCCCAATACAAGG	0.388													7	26					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43552443	43552443	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:43552443G>A	uc001zrd.1	-	3	251	c.243C>T	c.(241-243)CGC>CGT	p.R81R	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	81					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	GGCTGTGATGGCGTGCCAGGC	0.672													7	31					0	0	1	0	0
PDIA3	2923	broad.mit.edu	37	15	44055282	44055282	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:44055282C>T	uc001zsu.2	+	5	628	c.480C>T	c.(478-480)TTC>TTT	p.F160F	PDIA3_uc010bdp.2_Silent_p.F140F|PDIA3_uc010ued.1_5'UTR	NM_005313	NP_005304	P30101	PDIA3_HUMAN	protein disulfide-isomerase A3 precursor	160					cell redox homeostasis|glycerol ether metabolic process|post-translational protein modification|protein folding|protein import into nucleus|protein N-linked glycosylation via asparagine|protein retention in ER lumen|signal transduction	endoplasmic reticulum lumen|melanosome	cysteine-type endopeptidase activity|electron carrier activity|phospholipase C activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)|skin(1)	2		all_cancers(109;2.61e-15)|all_epithelial(112;1.12e-12)|Lung NSC(122;2.17e-08)|all_lung(180;2.45e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.48e-07)		TAGGTTTTTTCGATGATTCAT	0.393													5	87					0	0	1	0	0
CTDSPL2	51496	broad.mit.edu	37	15	44811453	44811453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:44811453C>T	uc001ztr.2	+	11	1615	c.1199C>T	c.(1198-1200)ACT>ATT	p.T400I	CTDSPL2_uc001zts.2_Missense_Mutation_p.T400I|CTDSPL2_uc001ztt.2_Missense_Mutation_p.T400I|CTDSPL2_uc010bdv.2_Missense_Mutation_p.T328I	NM_016396	NP_057480	Q05D32	CTSL2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	400	FCP1 homology.						phosphoprotein phosphatase activity				0		all_cancers(109;4.36e-14)|all_epithelial(112;9.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;1.02e-20)|GBM - Glioblastoma multiforme(94;1.49e-06)|COAD - Colon adenocarcinoma(120;0.0857)|Colorectal(105;0.0905)		CTTTCAAAAACTATAATAATT	0.333													11	67					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45402102	45402102	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:45402102A>G	uc010bea.2	-	10	1320	c.1117T>C	c.(1117-1119)TAC>CAC	p.Y373H	DUOX2_uc001zun.2_Missense_Mutation_p.Y373H	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	373	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGAATCCAGTAGTTGTTGCAG	0.502													11	103					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45433149	45433149	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:45433149C>T	uc001zus.1	+	14	1792	c.1446C>T	c.(1444-1446)CTC>CTT	p.L482L	DUOX1_uc001zut.1_Silent_p.L482L|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	482	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TAGAGCTGCTCCCTGGGGGAC	0.587													8	107					0	0	1	0	0
GATM	2628	broad.mit.edu	37	15	45658282	45658282	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:45658282C>G	uc001zvc.2	-	6	1269	c.940G>C	c.(940-942)GGT>CGT	p.G314R	GATM_uc001zvb.2_Missense_Mutation_p.G185R|GATM_uc010uev.1_Missense_Mutation_p.G367R	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	314					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	AGCACAATACCAGGTCCAATG	0.433													11	90					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49030999	49030999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:49030999G>A	uc001zwy.2	-	26	4446	c.4412C>T	c.(4411-4413)TCT>TTT	p.S1471F	CEP152_uc001zwz.2_Missense_Mutation_p.S1527F	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1471					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TCTTTCATTAGAATCGCGAAA	0.403													6	43					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212466	50212466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:50212466C>T	uc001zxu.2	-	18	2042	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	ATP8B4_uc010ber.2_Missense_Mutation_p.E507K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E444K|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	634	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCAATTTCTTCATATAGCCCA	0.393													15	194					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50279599	50279599	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:50279599A>C	uc001zxu.2	-	10	879	c.737T>G	c.(736-738)GTT>GGT	p.V246G	ATP8B4_uc010ber.2_Missense_Mutation_p.V119G|ATP8B4_uc010ufd.1_Missense_Mutation_p.V119G|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	246	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGCAAAAATAACCATTCCAAA	0.468													7	82					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50555448	50555448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:50555448C>T	uc001zxz.2	-	2	294	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	HDC_uc010uff.1_Missense_Mutation_p.R63Q|HDC_uc010bet.1_Missense_Mutation_p.R63Q|HDC_uc010beu.1_Missense_Mutation_p.R63Q	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	63					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CATGATGATTCGTTCAATGTC	0.597													23	316					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51741366	51741366	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:51741366G>A	uc002abf.2	-	43	9151	c.8926C>T	c.(8926-8928)CTA>TTA	p.L2976L	DMXL2_uc002abd.2_Silent_p.L1068L|DMXL2_uc010ufy.1_Silent_p.L2977L|DMXL2_uc010bfa.2_Silent_p.L2340L|DMXL2_uc002abc.2_RNA	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2976	WD 15.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GAATGAATTAGGCCATGGCCT	0.413													11	92					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51984484	51984484	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:51984484A>G	uc002abh.2	+	7	1227	c.819A>G	c.(817-819)GAA>GAG	p.E273E	SCG3_uc010ufz.1_Silent_p.E41E	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	273				EEL -> RDF (in Ref. 1; AAD44483).	platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		ACTTTGAGGAACTCCAATATT	0.383													4	79					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52521359	52521359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:52521359C>T	uc010bff.2	-	25	3315	c.3178G>A	c.(3178-3180)GAA>AAA	p.E1060K	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1060	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CGGGCCACTTCCGCCTTCAAG	0.522													12	156					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	54025313	54025313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:54025313C>T	uc002acj.2	-	2	76	c.34G>A	c.(34-36)GGA>AGA	p.G12R	WDR72_uc010bfi.1_Missense_Mutation_p.G12R	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	12										lung(1)|skin(1)	2				all cancers(107;0.0511)		GCCTTCTGTCCCCAGAGTGCC	0.502													11	69					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54786858	54786858	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:54786858C>T	uc002ack.2	+	18	4986	c.4986C>T	c.(4984-4986)TTC>TTT	p.F1662F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1662	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATTTGCATTTCAAAGTTAAAT	0.328													5	70					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54847642	54847642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:54847642C>T	uc002ack.2	+	27	5890	c.5890C>T	c.(5890-5892)CGA>TGA	p.R1964*		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1964	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCACATGATTCGAGAGGATGC	0.403													4	35					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54914588	54914588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:54914588G>A	uc002ack.2	+	29	6170	c.6170G>A	c.(6169-6171)GGA>GAA	p.G2057E	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2057	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCCACCCCAGGAACGGGAGAT	0.443													5	65					0	0	1	0	0
DYX1C1	161582	broad.mit.edu	37	15	55742462	55742462	+	Silent	SNP	G	A	A	rs145991721		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:55742462G>A	uc002adc.2	-	6	1109	c.741C>T	c.(739-741)TTC>TTT	p.F247F	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Silent_p.F247F|DYX1C1_uc002add.2_Silent_p.F247F	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	247					neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		GAGCTGTTGGGAATACTCGAG	0.348													9	95					0	0	1	0	0
PRTG	283659	broad.mit.edu	37	15	55931947	55931947	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:55931947G>A	uc002adg.2	-	13	2265	c.2217C>T	c.(2215-2217)TTC>TTT	p.F739F		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	739	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TCCAGTGCAGGAAGATGGAAG	0.498													14	160					0	0	1	0	0
TCF12	6938	broad.mit.edu	37	15	57543590	57543590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:57543590C>T	uc002aec.2	+	14	1441	c.1157C>T	c.(1156-1158)TCC>TTC	p.S386F	TCF12_uc010ugm.1_Missense_Mutation_p.S438F|TCF12_uc010ugn.1_Missense_Mutation_p.S382F|TCF12_uc002aea.2_Missense_Mutation_p.S386F|TCF12_uc010bfs.2_Intron|TCF12_uc002aeb.2_Missense_Mutation_p.S386F|TCF12_uc002aed.2_Missense_Mutation_p.S386F|TCF12_uc002aee.2_Missense_Mutation_p.S216F|TCF12_uc010bft.2_Missense_Mutation_p.S216F|TCF12_uc010ugo.1_Missense_Mutation_p.S150F|TCF12_uc010ugp.1_Missense_Mutation_p.S20F|TCF12_uc010ugq.1_Missense_Mutation_p.S20F|TCF12_uc010ugr.1_5'Flank	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	386					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity	p.S386S(1)		central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		GCACCTTCATCCCCAAGCTAT	0.438			T	TEC	extraskeletal myxoid chondrosarcoma								3	40					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57731226	57731226	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:57731226G>A	uc002aeg.2	+	2	1105	c.1029G>A	c.(1027-1029)CGG>CGA	p.R343R	CGNL1_uc010bfw.2_Silent_p.R343R	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	343	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GAACTGGACGGGATATTGATA	0.438													9	56					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57731246	57731246	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:57731246T>C	uc002aeg.2	+	2	1125	c.1049T>C	c.(1048-1050)ATT>ACT	p.I350T	CGNL1_uc010bfw.2_Missense_Mutation_p.I350T	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	350	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ACAGGATCAATTCCTGGTGTG	0.438													8	43					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58287303	58287303	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:58287303G>A	uc002aex.2	-	5	586	c.528C>T	c.(526-528)CCC>CCT	p.P176P	ALDH1A2_uc002aey.2_Silent_p.P176P|ALDH1A2_uc010ugv.1_Silent_p.P155P|ALDH1A2_uc010ugw.1_Silent_p.P147P|ALDH1A2_uc002aew.2_Silent_p.P80P	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	176					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ACACTCCAATGGGTTCATGTC	0.383													6	124					0	0	1	0	0
AQP9	366	broad.mit.edu	37	15	58465363	58465363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:58465363G>A	uc002aez.2	+	3	692	c.335G>A	c.(334-336)GGA>GAA	p.G112E	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Missense_Mutation_p.G47E	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	112	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		CAGTTCTTGGGAGCCTTTGTG	0.473													7	137					0	0	1	0	0
AQP9	366	broad.mit.edu	37	15	58471452	58471452	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:58471452G>A	uc002aez.2	+	5	978	c.621G>A	c.(619-621)CTG>CTA	p.L207L	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Silent_p.L142L	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	207	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		CTTCCTCCCTGGGACTGAACA	0.532													5	27					0	0	1	0	0
GCNT3	9245	broad.mit.edu	37	15	59910707	59910707	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:59910707G>A	uc002age.2	+	3	719	c.270G>A	c.(268-270)GAG>GAA	p.E90E	GCNT3_uc002agd.2_Silent_p.E90E	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	90	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						ATAACCTGGAGGTCAAGAAGA	0.498													7	94					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63908028	63908028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:63908028G>A	uc002amp.2	-	76	14181	c.14033C>T	c.(14032-14034)TCC>TTC	p.S4678F		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4678	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CTTCCTGTTGGAAAATGTGAG	0.438													3	24					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63918323	63918323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:63918323G>A	uc002amp.2	-	71	13284	c.13136C>T	c.(13135-13137)CCT>CTT	p.P4379L		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4379					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CACTGTGTCAGGCAGGCCCAG	0.512													5	30					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63953993	63953993	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:63953993G>A	uc002amp.2	-	45	9277	c.9129C>T	c.(9127-9129)TAC>TAT	p.Y3043Y		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3043					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TCATGGCTAAGTACTTCTCCC	0.453													7	95					0	0	1	0	0
RASL12	51285	broad.mit.edu	37	15	65351727	65351728	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65351727_65351728CC>TT	uc002aoi.1	-	3	404_405	c.189_190GG>AA	c.(187-192)GTGGAC>GTAAAC	p.D64N	RASL12_uc002aoj.1_Missense_Mutation_p.D45N|RASL12_uc010uir.1_Missense_Mutation_p.D53N	NM_016563	NP_057647	Q9NYN1	RASLC_HUMAN	RAS-like, family 12 protein	64					small GTPase mediated signal transduction	membrane	GTP binding|GTPase activity			skin(1)	1						GGCTGGTGGTCCACAGTCTCCT	0.525													5	66					0	0	1	0	0
PDCD7	10081	broad.mit.edu	37	15	65421405	65421405	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65421405A>G	uc002aol.2	-	2	1029	c.974T>C	c.(973-975)TTG>TCG	p.L325S		NM_005707	NP_005698	Q8N8D1	PDCD7_HUMAN	programmed cell death 7	325	Potential.				apoptosis|induction of apoptosis|response to glucocorticoid stimulus	U12-type spliceosomal complex					0						CAGTTTCCTCAATTTCTCCAA	0.478													38	449					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65494255	65494255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65494255C>T	uc002aon.2	-	8	1322	c.1141G>A	c.(1141-1143)GAT>AAT	p.D381N		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	381	Ig-like C2-type.				negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GCCCCAGCATCACTCTGGGCC	0.577													9	64					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65496858	65496858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65496858C>T	uc002aon.2	-	6	848	c.667G>A	c.(667-669)GAC>AAC	p.D223N		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	223					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						AGCATGAAGTCCTGGCACATG	0.597													10	88					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65682496	65682496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65682496G>A	uc002aou.1	-	13	2615	c.2405C>T	c.(2404-2406)ACC>ATC	p.T802I	IGDCC4_uc002aot.1_Missense_Mutation_p.T390I	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	802	Fibronectin type-III 4.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TCCCCACCTGGTGTAATAGGT	0.547													13	110					0	0	1	0	0
SLC24A1	9187	broad.mit.edu	37	15	65918088	65918088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:65918088C>T	uc010ujf.1	+	2	1957	c.1670C>T	c.(1669-1671)CCC>CTC	p.P557L	SLC24A1_uc010ujd.1_Missense_Mutation_p.P557L|SLC24A1_uc010uje.1_Missense_Mutation_p.P557L|SLC24A1_uc010ujg.1_Missense_Mutation_p.P557L|SLC24A1_uc010ujh.1_Missense_Mutation_p.P557L	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	557	Cytoplasmic (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						ACCTGGTGGCCCTTATTCCGT	0.522													14	95					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67681173	67681173	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:67681173C>T	uc002aqo.1	+	12	1508	c.1461C>T	c.(1459-1461)GCC>GCT	p.A487A	IQCH_uc002aqq.1_Silent_p.A235A|IQCH_uc002aqp.1_Silent_p.A239A	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	487										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TTTTAGATGCCAATGTGAATG	0.378													6	58					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67782384	67782384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:67782384G>A	uc002aqo.1	+	19	2890	c.2843G>A	c.(2842-2844)AGA>AAA	p.R948K	IQCH_uc002aqq.1_Missense_Mutation_p.R605K|IQCH_uc002aqp.1_Intron|uc002aqr.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	948										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CACCTGAAGAGACACAAGTTG	0.343													16	174					0	0	1	0	0
SPESP1	246777	broad.mit.edu	37	15	69238007	69238007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:69238007G>A	uc002arn.1	+	2	262	c.134G>A	c.(133-135)CGA>CAA	p.R45Q	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	45					multicellular organismal development	acrosomal vesicle					0						AACCTAGTACGAAGTGTTCCC	0.343													5	90					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69329397	69329397	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:69329397C>T	uc002ars.1	+	8	1238	c.1218C>T	c.(1216-1218)CTC>CTT	p.L406L	NOX5_uc002arp.1_Silent_p.L388L|NOX5_uc002arq.1_Silent_p.L360L|NOX5_uc010bid.1_Silent_p.L371L|NOX5_uc002arr.1_Silent_p.L378L|NOX5_uc010bie.1_Silent_p.L206L|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	406	Helical; (Potential).|Ferric oxidoreductase.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TGTCCTACCTCCTCGTGTGGC	0.572													22	247					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69329472	69329472	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:69329472C>T	uc002ars.1	+	8	1313	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	NOX5_uc002arp.1_Silent_p.F413F|NOX5_uc002arq.1_Silent_p.F385F|NOX5_uc010bid.1_Silent_p.F396F|NOX5_uc002arr.1_Silent_p.F403F|NOX5_uc010bie.1_Silent_p.F231F|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	431	Ferric oxidoreductase.|Extracellular (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TCTTGTTTTTCCTGGAGAAGG	0.562													13	99					0	0	1	0	0
LARP6	55323	broad.mit.edu	37	15	71125132	71125132	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:71125132C>T	uc002ass.2	-	3	806	c.735G>A	c.(733-735)AGG>AGA	p.R245R		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	245					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						GGCTGCTGATCCTCCGGATGT	0.562													3	29					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	71953006	71953006	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:71953006C>T	uc002atb.1	+	7	1369	c.1290C>T	c.(1288-1290)GTC>GTT	p.V430V	THSD4_uc002atd.1_Silent_p.V104V|THSD4_uc010ukg.1_Silent_p.V70V|THSD4_uc002ate.2_Silent_p.V70V	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	430						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						ACCACCGCGTCGTGGAGATTC	0.532													8	103					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72324876	72324876	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:72324876C>T	uc002atl.3	-	3	1367	c.894G>A	c.(892-894)AAG>AAA	p.K298K	MYO9A_uc010biq.2_5'UTR|MYO9A_uc002ato.2_Silent_p.K298K|MYO9A_uc002atn.1_Silent_p.K298K	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	298	Myosin head-like 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CTTGAATAAACTTCCCAAAAC	0.333													3	41					0	0	1	0	0
ARIH1	25820	broad.mit.edu	37	15	72873292	72873292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:72873292C>T	uc002aut.3	+	12	1750	c.1436C>T	c.(1435-1437)GCT>GTT	p.A479V		NM_005744	NP_005735	Q9Y4X5	ARI1_HUMAN	ariadne ubiquitin-conjugating enzyme E2 binding	479					ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding				0						TATGTCTTCGCTTTCTACCTC	0.458													11	107					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73594990	73594990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:73594990C>T	uc002avm.3	+	29	4481	c.4339C>T	c.(4339-4341)CAC>TAC	p.H1447Y	NEO1_uc010ukx.1_Missense_Mutation_p.H1436Y|NEO1_uc010uky.1_Missense_Mutation_p.H1394Y|NEO1_uc010ukz.1_Missense_Mutation_p.H860Y|NEO1_uc002avn.3_Missense_Mutation_p.H1085Y	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1447	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AGAGATGGCCCACCTGGAAGG	0.493													4	41					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74468048	74468048	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:74468048C>T	uc002axg.1	+	2	1131	c.849C>T	c.(847-849)CCC>CCT	p.P283P	ISLR_uc002axh.1_Silent_p.P283P	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	283	Ig-like.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TCACCAGCCCCAACGTGGGCA	0.637													14	188					0	0	1	0	0
STRA6	64220	broad.mit.edu	37	15	74473679	74473679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:74473679C>T	uc002axk.2	-	17	1823	c.1641G>A	c.(1639-1641)ATG>ATA	p.M547I	STRA6_uc002axi.2_Missense_Mutation_p.M356I|STRA6_uc010ulh.1_Missense_Mutation_p.M585I|STRA6_uc002axj.2_Missense_Mutation_p.M586I|STRA6_uc010bji.2_Missense_Mutation_p.M547I|STRA6_uc002axl.2_Missense_Mutation_p.M479I|STRA6_uc002axm.2_Missense_Mutation_p.M547I|STRA6_uc002axn.2_Missense_Mutation_p.M538I|STRA6_uc010uli.1_Missense_Mutation_p.M584I	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	547	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						GGCTGAGGTCCATCTGGCCAA	0.632													5	53					0	0	1	0	0
AGPHD1	123688	broad.mit.edu	37	15	78819766	78819766	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:78819766C>T	uc010unc.1	+	4	635	c.522C>T	c.(520-522)TTC>TTT	p.F174F	AGPHD1_uc002bdt.2_Silent_p.F174F|AGPHD1_uc010ble.2_Silent_p.F174F	NM_001013619	NP_001013641	A2RU49	AGPD1_HUMAN	aminoglycoside phosphotransferase domain	174						cytoplasm	kinase activity				0						GGGAGAACTTCATCTGGAATC	0.423													9	107					0	0	1	0	0
MORF4L1	10933	broad.mit.edu	37	15	79186450	79186450	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:79186450T>C	uc002bel.2	+	11	985	c.797T>C	c.(796-798)GTA>GCA	p.V266A	MORF4L1_uc002bem.2_Missense_Mutation_p.V227A|MORF4L1_uc010une.1_Missense_Mutation_p.V139A	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	266	Sufficient for interaction with SIN3A.|Sufficient for interaction with PHF12.				double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						TACTTCAACGTAATGTTGGGT	0.403													15	139					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81181834	81181834	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:81181834C>T	uc002bfw.1	+	9	1247	c.987C>T	c.(985-987)TTC>TTT	p.F329F	KIAA1199_uc010unn.1_Silent_p.F329F	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	329										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CGGAGTGGTTCGATCATGATA	0.473													5	71					0	0	1	0	0
IL16	3603	broad.mit.edu	37	15	81565429	81565429	+	Splice_Site	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:81565429A>G	uc002bgh.3	+	6	1052	c.676_splice	c.e6-2	p.G226_splice	IL16_uc002bgc.2_Splice_Site|IL16_uc010blq.1_Splice_Site_p.G226_splice|IL16_uc002bge.3_Splice_Site|IL16_uc010unp.1_Splice_Site_p.G268_splice|IL16_uc002bgg.2_Splice_Site_p.G226_splice	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2						immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TTTTTTCCCCAGGGTCTGGGC	0.512													4	50					0	0	1	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													3	22					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83330664	83330664	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:83330664G>A	uc010uoh.1	-	24	3049	c.2872C>T	c.(2872-2874)CGA>TGA	p.R958*	AP3B2_uc010uoi.1_Nonsense_Mutation_p.R977*|AP3B2_uc010uoj.1_Nonsense_Mutation_p.R926*|AP3B2_uc010bmp.2_Nonsense_Mutation_p.R21*|AP3B2_uc010uog.1_Nonsense_Mutation_p.R594*	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	958					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TAGAACTGTCGGGTCTGGGTG	0.552													3	44					0	0	1	0	0
TM6SF1	53346	broad.mit.edu	37	15	83781589	83781589	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:83781589C>T	uc002bjp.2	+	2	242	c.133C>T	c.(133-135)CTG>TTG	p.L45L	TM6SF1_uc010bmq.2_Silent_p.L45L|TM6SF1_uc002bjq.2_Silent_p.L45L|TM6SF1_uc010bmr.2_RNA	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	45	Helical; (Potential).					integral to membrane				ovary(1)	1						CATCCTGTTCCTGGTAGCACT	0.493													17	141					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83926503	83926503	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:83926503C>T	uc002bjt.1	-	5	2764	c.2676G>A	c.(2674-2676)GGG>GGA	p.G892G	BNC1_uc010uos.1_Silent_p.G880G	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	892					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTTCACAGTTCCCATCACTGT	0.562													6	113					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84558914	84558914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:84558914C>T	uc002bjz.3	+	11	1350	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P376S|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P376S	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	376						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAGGGTAGTTCCTGACCATTA	0.408													16	113					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84611435	84611435	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:84611435G>A	uc002bjz.3	+	18	2429	c.2205G>A	c.(2203-2205)GAG>GAA	p.E735E	ADAMTSL3_uc010bmt.1_Silent_p.E735E|ADAMTSL3_uc010bmu.1_Silent_p.E735E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	735	TSP type-1 5.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACCCAGGGGAGACCCCTGCCC	0.557													10	70					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651513	84651513	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:84651513C>T	uc002bjz.3	+	21	3357	c.3133C>T	c.(3133-3135)CTG>TTG	p.L1045L	ADAMTSL3_uc010bmt.1_Silent_p.L1045L|ADAMTSL3_uc010bmu.1_Silent_p.L1045L	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1045						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGACCTTTATCTGGATGATGA	0.448													5	73					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84694117	84694117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:84694117C>T	uc002bjz.3	+	27	4809	c.4585C>T	c.(4585-4587)CCT>TCT	p.P1529S	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P1529S|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P1529S	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1529	TSP type-1 9.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGCATGTGCCCCTAAAGACCG	0.522													4	49					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85400581	85400581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:85400581C>T	uc002ble.2	+	6	3385	c.3218C>T	c.(3217-3219)CCT>CTT	p.P1073L		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1073					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CCTTCTCTTCCTGGAACTGGG	0.642													3	60					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86124594	86124594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:86124594G>A	uc002blv.1	+	7	3465	c.3295G>A	c.(3295-3297)GGT>AGT	p.G1099S	AKAP13_uc002blt.1_Missense_Mutation_p.G1099S|AKAP13_uc002blu.1_Missense_Mutation_p.G1099S|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1099					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TGCTCTACAAGGTATGGCTGA	0.468													8	68					0	0	1	0	0
ISG20	3669	broad.mit.edu	37	15	89198721	89198721	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:89198721C>T	uc002bmv.1	+	4	798	c.505C>T	c.(505-507)CGA>TGA	p.R169*	ISG20_uc002bmu.1_RNA|ISG20_uc002bmw.1_RNA|ISG20_uc010upn.1_RNA	NM_002201	NP_002192	Q96AZ6	ISG20_HUMAN	interferon stimulated exonuclease	169					cell proliferation|DNA catabolic process, exonucleolytic|response to virus|RNA catabolic process|type I interferon-mediated signaling pathway	PML body	3'-5'-exoribonuclease activity|exoribonuclease II activity|metal ion binding|RNA binding|single-stranded DNA specific 3'-5' exodeoxyribonuclease activity				0	Lung NSC(78;0.0554)|all_lung(78;0.103)		BRCA - Breast invasive adenocarcinoma(143;0.12)			CCAGAGAATCCGAGCCCGCCG	0.592													5	88					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90152080	90152080	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:90152080C>T	uc002boe.2	+	15	2769	c.2769C>T	c.(2767-2769)TCC>TCT	p.S923S		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	923					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AATTGCTTTCCCCTTCAAAGA	0.378													5	46					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90164656	90164656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:90164656C>T	uc002boe.2	+	19	3187	c.3187C>T	c.(3187-3189)CGG>TGG	p.R1063W	C15orf42_uc010upv.1_5'Flank	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1063					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCAAAGTATTCGGTCTCCCAA	0.388													5	76					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90167455	90167455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:90167455C>T	uc002boe.2	+	20	3914	c.3914C>T	c.(3913-3915)CCT>CTT	p.P1305L	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1305	Pro-rich.				cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TCTTCCCCACCTGTTACGCCA	0.448													15	196					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90280818	90280818	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:90280818C>T	uc002boj.2	+	15	1724	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	WDR93_uc010bnr.2_Silent_p.S513S|WDR93_uc010upz.1_Silent_p.S258S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	541					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TCATCTTTTCCAAGAATGGCT	0.557													16	170					0	0	1	0	0
IQGAP1	8826	broad.mit.edu	37	15	91034584	91034584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:91034584C>T	uc002bpl.1	+	34	4369	c.4268C>T	c.(4267-4269)GCC>GTC	p.A1423V	IQGAP1_uc010uqg.1_Missense_Mutation_p.A44V	NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1423	C2.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			CATCAGAGAGCCATGCAGAGA	0.403													5	31					0	0	1	0	0
CRTC3	64784	broad.mit.edu	37	15	91083328	91083329	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:91083328_91083329CC>TT	uc002bpp.2	+	2	296_297	c.190_191CC>TT	c.(190-192)CCA>TTA	p.P64L	CRTC3_uc002bpn.2_Missense_Mutation_p.P64L|CRTC3_uc002bpo.2_Missense_Mutation_p.P64L	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	64	Required for interaction with HTLV-1 TAX.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			AGGATCCTTACCAAATGTGAGC	0.431			T	MAML2	salivary gland mucoepidermoid								6	65					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93515639	93515639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:93515639C>T	uc002bsp.2	+	19	3072	c.2497C>T	c.(2497-2499)CCT>TCT	p.P833S	CHD2_uc002bso.1_Missense_Mutation_p.P833S|CHD2_uc010bog.1_Missense_Mutation_p.P78S|CHD2_uc010boh.1_Intron	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	833	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TAAACACTATCCTTTCCAGGT	0.463													9	134					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94913385	94913385	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:94913385G>T	uc002btj.2	+	11	1623	c.1558G>T	c.(1558-1560)GAT>TAT	p.D520Y	MCTP2_uc002bti.2_Missense_Mutation_p.D520Y|MCTP2_uc010boj.2_Missense_Mutation_p.D249Y|MCTP2_uc010bok.2_Missense_Mutation_p.D520Y|MCTP2_uc002btk.3_Missense_Mutation_p.D108Y|MCTP2_uc002btl.2_Missense_Mutation_p.D108Y	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	520	C2 3.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AAAGGCAGCAGATCTCTTAGC	0.383													3	31					0.014758	0.0148129	1	1	0
SYNM	23336	broad.mit.edu	37	15	99669977	99669977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:99669977C>T	uc002bup.2	+	6	1532	c.1412C>T	c.(1411-1413)TCG>TTG	p.S471L	SYNM_uc002buo.2_Missense_Mutation_p.S471L|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	471	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						GCCCGCGAGTCGTACCGGGAT	0.522													5	31					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99670258	99670258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:99670258G>A	uc002bup.2	+	6	1813	c.1693G>A	c.(1693-1695)GAC>AAC	p.D565N	SYNM_uc002buo.2_Missense_Mutation_p.D565N|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	565	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						TAAGGAGAAGGACTCACCGAA	0.498													4	35					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100340198	100340198	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:100340198C>T	uc010urx.1	-	4		c.729G>A			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|C15orf51_uc010bow.2_Intron|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						CGAGTCTCGTCGCGCCGCTGT	0.627													4	48					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	101098935	101098935	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:101098935G>A	uc002bwc.1	+	1		c.51G>A								Homo sapiens cDNA clone IMAGE:4822975.																		ACTTGAGGGCGAAGAAATGCT	0.617													5	72					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101569171	101569171	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:101569171C>T	uc002bwr.2	+	20	3016	c.2697C>T	c.(2695-2697)TTC>TTT	p.F899F	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	899					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCATCAGCTTCCTCATAGAAA	0.582													13	208					0	0	1	0	0
C1QTNF8	390664	broad.mit.edu	37	16	1144761	1144761	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:1144761C>T	uc010uuw.1	-	3	436	c.162G>A	c.(160-162)AGG>AGA	p.R54R		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	54						collagen				skin(1)	1		Hepatocellular(780;0.00369)				GAGGCAGCCCCCTCCACAGGT	0.677													9	60					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2817437	2817437	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:2817437C>A	uc002crk.2	+	11	7457	c.6908C>A	c.(6907-6909)CCA>CAA	p.P2303Q	SRRM2_uc002crj.1_Missense_Mutation_p.P2207Q|SRRM2_uc002crl.1_Missense_Mutation_p.P2303Q|SRRM2_uc010bsu.1_Missense_Mutation_p.P2207Q	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2303	Ala-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCAGAACCCCAGCTGCCTTG	0.627													34	308					6.45866e-13	6.53953e-13	1	1	0
MEFV	4210	broad.mit.edu	37	16	3304166	3304166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3304166G>A	uc002cun.1	-	2	942	c.902C>T	c.(901-903)TCG>TTG	p.S301L		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	301					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	accggtgacCGAATGTTCTGG	0.313													3	47					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3304435	3304435	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3304435C>T	uc002cun.1	-	2	673	c.633G>A	c.(631-633)GGG>GGA	p.G211G		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	211					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCTGCAGCCTCCCCGCGGAGC	0.741													5	22					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3306472	3306472	+	Missense_Mutation	SNP	C	G	G	rs141288548		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3306472C>G	uc002cun.1	-	1	156	c.116G>C	c.(115-117)AGG>ACG	p.R39T		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	39	DAPIN.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCGGGGGATCCTGGAGTGCTC	0.587													8	132					0	0	1	0	0
NAT15	79903	broad.mit.edu	37	16	3529541	3529541	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3529541G>T	uc002cvh.3	+	4	427	c.181G>T	c.(181-183)GGT>TGT	p.G61C	NAT15_uc010uxb.1_Missense_Mutation_p.G68C|NAT15_uc010btk.1_Translation_Start_Site|NAT15_uc010btl.2_Translation_Start_Site|NAT15_uc010btm.2_Missense_Mutation_p.G61C|NAT15_uc010uxc.1_Missense_Mutation_p.G61C|NAT15_uc010uxd.1_RNA|NAT15_uc010uxe.1_RNA|NAT15_uc002cvg.1_Missense_Mutation_p.G61C	NM_001083601	NP_001077070	Q9H7X0	NAT15_HUMAN	N-acetyltransferase 15	61	N-acetyltransferase.						N-acetyltransferase activity				0						AACCTACAGAGGTGCCATTGT	0.443													8	56					1.33987e-11	1.35631e-11	1	1	0
NLRC3	197358	broad.mit.edu	37	16	3604312	3604312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3604312G>A	uc010btn.2	-	9	2609	c.2198C>T	c.(2197-2199)ACC>ATC	p.T733I	NLRC3_uc010bto.1_5'UTR	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	733	LRR 5.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATCCCTAACGGTGTTGCCCTG	0.592													4	37					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3640462	3640463	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3640462_3640463GG>AA	uc002cvp.2	-	12	3803_3804	c.3176_3177CC>TT	c.(3175-3177)CCC>CTT	p.P1059L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1059	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CACGGGACCGGGGTGTTGACAG	0.639								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				6	151					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3658452	3658452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3658452G>A	uc002cvp.2	-	2	1141	c.514C>T	c.(514-516)CTT>TTT	p.L172F	BTBD12_uc002cvq.1_Missense_Mutation_p.L172F	NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	172	Interaction with C20orf94, ERCC4 and MSH2.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TCTCTGGAAAGGTTTGGCGAT	0.368								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				11	146					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3900298	3900298	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:3900298C>T	uc002cvv.2	-	2	1002	c.798G>A	c.(796-798)AAG>AAA	p.K266K	CREBBP_uc002cvw.2_Silent_p.K266K	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	266	Interaction with SRCAP.	Breakpoint for translocation to form MYST3-CREBBP.			cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GTTCACTTACCTTGGCCATGC	0.572			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				20	147					0	0	1	0	0
CORO7	79585	broad.mit.edu	37	16	4407228	4407228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:4407228G>A	uc002cwh.3	-	26	2746	c.2626C>T	c.(2626-2628)CGG>TGG	p.R876W	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Missense_Mutation_p.R876W|CORO7_uc002cwg.3_Missense_Mutation_p.R656W|CORO7_uc010uxh.1_Missense_Mutation_p.R858W|CORO7_uc010uxi.1_Missense_Mutation_p.R791W	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	876						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						GATGGGGCCCGACGAGCAGGG	0.612													6	55					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4833743	4833743	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:4833743G>A	uc002cxq.2	-	6	678	c.537C>T	c.(535-537)TTC>TTT	p.F179F	SEPT12_uc002cxr.2_Silent_p.F133F|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	179					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						GCCGCTGCAGGAACTCAATGT	0.657													10	54					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7680636	7680636	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:7680636G>A	uc002cys.2	+	11	1696	c.708G>A	c.(706-708)GAG>GAA	p.E236E	A2BP1_uc010buf.1_Silent_p.E236E|A2BP1_uc002cyr.1_Silent_p.E235E|A2BP1_uc002cyt.2_Intron|A2BP1_uc010uxz.1_Silent_p.E279E|A2BP1_uc010uya.1_Silent_p.E193E|A2BP1_uc002cyv.1_Silent_p.E236E|A2BP1_uc010uyb.1_Silent_p.E236E|A2BP1_uc002cyw.2_Silent_p.E256E|A2BP1_uc002cyy.2_Silent_p.E256E|A2BP1_uc002cyx.2_Silent_p.E256E|A2BP1_uc010uyc.1_Intron	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	236					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCAACCAGGAGGGATCTTCCA	0.488													4	69					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7759080	7759080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:7759080G>A	uc002cys.2	+	15	2006	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N	A2BP1_uc002cyt.2_Missense_Mutation_p.D313N|A2BP1_uc010uxz.1_Missense_Mutation_p.D383N|A2BP1_uc010uya.1_Silent_p.P314P|A2BP1_uc010uyb.1_Missense_Mutation_p.D340N|A2BP1_uc002cyw.2_Silent_p.P378P|A2BP1_uc002cyy.2_Missense_Mutation_p.D361N|A2BP1_uc002cyx.2_Missense_Mutation_p.D361N|A2BP1_uc010uyc.1_Missense_Mutation_p.D334N	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	340					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		TTATGCTGCCGACCCCTACCA	0.473													8	122					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857300	9857300	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:9857300G>A	uc002czo.3	-	13	4649	c.4101C>T	c.(4099-4101)TTC>TTT	p.F1367F	GRIN2A_uc010uym.1_Silent_p.F1367F|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1367	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGGAGTGGAGGAAAGGGTTAT	0.547													4	47					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857458	9857458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:9857458C>T	uc002czo.3	-	13	4491	c.3943G>A	c.(3943-3945)GAC>AAC	p.D1315N	GRIN2A_uc010uym.1_Missense_Mutation_p.D1315N|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1315	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGTTCCCTGTCCTTGAGGCTT	0.512													8	108					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857960	9857960	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:9857960G>A	uc002czo.3	-	13	3989	c.3441C>T	c.(3439-3441)TTC>TTT	p.F1147F	GRIN2A_uc010uym.1_Silent_p.F1147F|GRIN2A_uc010uyn.1_Silent_p.F990F|GRIN2A_uc002czr.3_Silent_p.F1147F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1147	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGGGTCCGGGAAGTCCACGT	0.527													6	93					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9943663	9943663	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:9943663G>A	uc002czo.3	-	5	1826	c.1278C>T	c.(1276-1278)ACC>ACT	p.T426T	GRIN2A_uc010uym.1_Silent_p.T426T|GRIN2A_uc010uyn.1_Silent_p.T269T|GRIN2A_uc002czr.3_Silent_p.T426T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	426	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CACACGTCTCGGTCAGGGGGT	0.542													6	87					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032214	10032214	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:10032214C>T	uc002czo.3	-	3	1157	c.609G>A	c.(607-609)GTG>GTA	p.V203V	GRIN2A_uc010uym.1_Silent_p.V203V|GRIN2A_uc010uyn.1_Silent_p.V46V|GRIN2A_uc002czr.3_Silent_p.V203V	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	203	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCAGTGTGATCACATTCTGCA	0.498													6	84					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788311	10788311	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:10788311G>A	uc002czz.1	-	1	492	c.420C>T	c.(418-420)AAC>AAT	p.N140N		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	140	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TCTGGCCCAGGTTCCGGCAGG	0.607													19	203					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	11001473	11001473	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:11001473C>T	uc002dai.3	+	11	2257	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	CIITA_uc002daj.3_Silent_p.F709F|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Silent_p.F708F|CIITA_uc002dah.2_Silent_p.F660F|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	708	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						AGCTGGCCTTCCCCAGCTTCC	0.622			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								11	91					0	0	1	0	0
TNP2	7142	broad.mit.edu	37	16	11361866	11361866	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:11361866C>T	uc002das.2	-	2	445	c.404G>A	c.(403-405)TGG>TAG	p.W135*	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	135					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						GTTGGATTTCCATCCTAAGGG	0.443													3	29					0	0	1	0	0
PRM2	5620	broad.mit.edu	37	16	11370014	11370014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:11370014G>A	uc002dau.1	-	1	324	c.214C>T	c.(214-216)CGC>TGC	p.R72C	C16orf75_uc002daq.1_Intron|PRM3_uc002dat.1_5'Flank|PRM2_uc010bus.1_Missense_Mutation_p.R72C	NM_002762	NP_002753	P04554	PRM2_HUMAN	protamine 2	72					chromosome condensation|multicellular organismal development	nucleoplasm|nucleosome	DNA binding				0						CTGCAGGAGCGATGCTGCCGC	0.652													9	72					0	0	1	0	0
TXNDC11	51061	broad.mit.edu	37	16	11782265	11782265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:11782265G>A	uc010buu.1	-	10	2080	c.2018C>T	c.(2017-2019)CCC>CTC	p.P673L	TXNDC11_uc002dbg.1_Missense_Mutation_p.P646L	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	673	Thioredoxin 2.				cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						CCTTTTCAAGGGACTATAGAG	0.398													5	63					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16126992	16126992	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:16126992C>T	uc010bvi.2	+	6	817	c.642C>T	c.(640-642)TCC>TCT	p.S214S	ABCC1_uc010bvj.2_Silent_p.S214S|ABCC1_uc010bvk.2_Silent_p.S214S|ABCC1_uc010bvl.2_Silent_p.S214S|ABCC1_uc010bvm.2_Silent_p.S214S|ABCC1_uc002del.3_Silent_p.S98S|ABCC1_uc010bvn.2_Silent_p.S77S	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	214	Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CCAGCGCTTCCTTCCTGTCGA	0.478													7	89					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16248637	16248637	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:16248637G>A	uc002den.3	-	29	4093	c.4056C>T	c.(4054-4056)TTC>TTT	p.F1352F	ABCC6_uc010bvo.2_RNA|ABCC6_uc002dem.2_Silent_p.F104F	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1352	Cytoplasmic (By similarity).|ABC transporter 2.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GAGAGCCAGGGAACAGGATGG	0.672													3	20					0	0	1	0	0
NOMO2	283820	broad.mit.edu	37	16	18532154	18532154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:18532154G>A	uc002dfe.2	-	19	2278	c.2206C>T	c.(2206-2208)CCT>TCT	p.P736S	NOMO2_uc002dff.2_Missense_Mutation_p.P736S|NOMO2_uc010bvx.2_Missense_Mutation_p.P569S	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	736	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						TGCACGGGAGGCTTGGTCATT	0.562													22	244					0	0	1	0	0
NOMO2	283820	broad.mit.edu	37	16	18540843	18540843	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:18540843G>A	uc002dfe.2	-	15	1858	c.1786C>T	c.(1786-1788)CTG>TTG	p.L596L	NOMO2_uc002dff.2_Silent_p.L596L|NOMO2_uc010bvx.2_Silent_p.L429L	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	596	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						GCGTGAGACAGGGAACATCTC	0.507													6	63					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19051629	19051629	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:19051629T>C	uc002dfq.2	+	9	1328	c.1198T>C	c.(1198-1200)TTT>CTT	p.F400L	TMC7_uc010vao.1_Missense_Mutation_p.F394S|TMC7_uc002dfp.2_Missense_Mutation_p.F400L|TMC7_uc010vap.1_Missense_Mutation_p.F290L	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	400	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						CAAGATGGTTTTTGGAGAGAA	0.383													13	86					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19451764	19451764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:19451764C>T	uc002dgc.3	+	3	1153	c.404C>T	c.(403-405)CCT>CTT	p.P135L	TMC5_uc010vaq.1_Missense_Mutation_p.P135L|TMC5_uc002dgb.3_Missense_Mutation_p.P135L|TMC5_uc010var.1_Missense_Mutation_p.P135L	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	135	Extracellular (Potential).					integral to membrane				skin(1)	1						CAACGAAATCCTGATTTTGCA	0.502													21	231					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19475128	19475128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:19475128G>A	uc002dgc.3	+	8	2016	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	TMC5_uc010vaq.1_Missense_Mutation_p.E423K|TMC5_uc002dgb.3_Missense_Mutation_p.E423K|TMC5_uc010var.1_Missense_Mutation_p.E423K|TMC5_uc002dgd.1_Missense_Mutation_p.E177K|TMC5_uc002dge.3_Missense_Mutation_p.E177K|TMC5_uc002dgf.3_Missense_Mutation_p.E106K|TMC5_uc002dgg.3_Missense_Mutation_p.E64K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	423	Extracellular (Potential).					integral to membrane				skin(1)	1						CAGCCTGTCGGAAATTCTGAA	0.478													5	71					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19490830	19490830	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:19490830C>T	uc002dgc.3	+	14	2996	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	TMC5_uc010vaq.1_Silent_p.F697F|TMC5_uc002dgb.3_Silent_p.F749F|TMC5_uc010var.1_Silent_p.F749F|TMC5_uc002dgd.1_Silent_p.F503F|TMC5_uc002dge.3_Silent_p.F503F|TMC5_uc002dgf.3_Silent_p.F432F|TMC5_uc002dgg.3_Silent_p.F390F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	749	Helical; (Potential).					integral to membrane				skin(1)	1						TCAATTCCTTCCTGGGGGAGT	0.468													14	133					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20330972	20330972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20330972C>T	uc002dgv.2	-	7	1069	c.986G>A	c.(985-987)AGC>AAC	p.S329N	GP2_uc002dgw.2_Missense_Mutation_p.S326N|GP2_uc002dgx.2_Missense_Mutation_p.S182N|GP2_uc002dgy.2_Missense_Mutation_p.S179N	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	329	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AGCTTGGAGGCTGACTTTCAT	0.468													6	111					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20476888	20476888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20476888G>A	uc010bwe.2	+	4	466	c.227G>A	c.(226-228)GGG>GAG	p.G76E	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_5'UTR|ACSM2A_uc002dhf.3_Missense_Mutation_p.G76E|ACSM2A_uc002dhg.3_Missense_Mutation_p.G76E|ACSM2A_uc010vay.1_5'UTR	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	76					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AATGGGAAGGGGAAGGAATTA	0.572													3	73					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20482531	20482531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20482531G>A	uc010bwe.2	+	6	972	c.733G>A	c.(733-735)GAT>AAT	p.D245N	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.D166N|ACSM2A_uc002dhf.3_Missense_Mutation_p.D245N|ACSM2A_uc002dhg.3_Missense_Mutation_p.D245N|ACSM2A_uc010vay.1_Missense_Mutation_p.D166N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	245					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGCCAAGATGGATGCTGGGTA	0.473													9	54					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20486981	20486981	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20486981C>T	uc010bwe.2	+	9	1223	c.984C>T	c.(982-984)TTC>TTT	p.F328F	ACSM2A_uc010vax.1_Silent_p.F249F|ACSM2A_uc002dhf.3_Silent_p.F328F|ACSM2A_uc002dhg.3_Silent_p.F328F|ACSM2A_uc010vay.1_Silent_p.F249F|ACSM2A_uc002dhh.3_5'UTR	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	328					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GTTACAAGTTCCCCCATCTAC	0.512													9	112					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20551999	20551999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20551999C>T	uc002dhj.3	-	14	1816	c.1606G>A	c.(1606-1608)GCC>ACC	p.A536T	ACSM2B_uc002dhk.3_Missense_Mutation_p.A536T	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	536					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTGTATGGGGCTGTCACTGAC	0.478													10	79					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20648148	20648148	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20648148C>T	uc002dhm.1	-	9	1280	c.1212G>A	c.(1210-1212)AAG>AAA	p.K404K	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Silent_p.K404K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	404					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GGATGCTGCCCTTGTCATCAA	0.532													4	67					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20702343	20702343	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20702343C>T	uc002dhm.1	-	1	236	c.168G>A	c.(166-168)CTG>CTA	p.L56L	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.L56L	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	56					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CCCAGTAGTCCAGTACATAAC	0.473													7	64					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20959876	20959876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20959876C>T	uc010vbe.1	-	57	11272	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1193K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3758					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCCTCAATTTCCTTACAGTAG	0.532													4	29					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975996	20975996	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20975996G>A	uc010vbe.1	-	53	9210	c.9210C>T	c.(9208-9210)ATC>ATT	p.I3070I	DNAH3_uc010vbd.1_Silent_p.I505I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3070	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGATACAATGATGCCATTGT	0.498													7	59					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20981309	20981309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:20981309C>T	uc010vbe.1	-	52	8263	c.8263G>A	c.(8263-8265)GAA>AAA	p.E2755K	DNAH3_uc010vbd.1_Missense_Mutation_p.E190K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2755	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCCTCACATTCGTTCTGTGGG	0.597													13	90					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21221024	21221024	+	Silent	SNP	C	T	T	rs150656642		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:21221024C>T	uc002dii.2	-	4	258	c.258G>A	c.(256-258)CCG>CCA	p.P86P	ZP2_uc010bwn.1_Silent_p.P125P|ZP2_uc010bwo.2_Silent_p.P125P	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	86	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		AAGTGCAGTTCGGCATGTCGA	0.498													11	82					0	0	1	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926337	22926337	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:22926337G>A	uc002dli.2	+	2	630	c.558G>A	c.(556-558)GAG>GAA	p.E186E	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	186	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		TCACTCAAGAGGCTCCTCGAC	0.557													11	108					0	0	1	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926712	22926712	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:22926712C>T	uc002dli.2	+	2	1005	c.933C>T	c.(931-933)TTC>TTT	p.F311F	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	311	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		CCAAAGGATTCCCTTGCTTGA	0.493													25	198					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23079959	23079959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23079959C>T	uc002dll.2	-	16	3467	c.3467G>A	c.(3466-3468)AGA>AAA	p.R1156K	USP31_uc002dlk.2_Missense_Mutation_p.R428K|USP31_uc010vca.1_Missense_Mutation_p.R459K|USP31_uc010bxm.2_Missense_Mutation_p.R444K	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1156	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GGAGCCCTCTCTACTCAAGCT	0.612													4	56					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23203735	23203735	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23203735G>A	uc002dlm.1	+	4	820	c.681G>A	c.(679-681)CAG>CAA	p.Q227Q		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	227	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	ATGCCATTCAGGAGTGGTATA	0.502													11	140					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208632	23208632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23208632C>T	uc002dlm.1	+	6	1100	c.961C>T	c.(961-963)CTC>TTC	p.L321F		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	321	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CAACCCATTCCTCGTGTCCTC	0.488													4	68					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23221108	23221108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23221108G>A	uc002dlm.1	+	7	1254	c.1115G>A	c.(1114-1116)TGC>TAC	p.C372Y		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	372	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TACAGTCAGTGCACGGAGGAC	0.602													9	114					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23224170	23224170	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23224170G>A	uc002dlm.1	+	10	1525	c.1386G>A	c.(1384-1386)TGG>TGA	p.W462*		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	462	Extracellular (By similarity).			EWT -> DGH (in Ref. 5; AAC50758).	excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TTAAAGAGTGGACACTAACCA	0.597													8	102					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23364134	23364134	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23364134C>T	uc002dln.2	+	3	500	c.324C>T	c.(322-324)ATC>ATT	p.I108I		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	108	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	ATTCCAAAATCAAGCATTTGC	0.488													11	114					0	0	1	0	0
ERN2	10595	broad.mit.edu	37	16	23702165	23702165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23702165G>A	uc002dma.3	-	22	3081	c.2912C>T	c.(2911-2913)GCC>GTC	p.A971V	ERN2_uc010bxp.2_Missense_Mutation_p.A919V	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	923	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		CCTCCCTGTGGCCCCAGGGCA	0.607													3	27					0	0	1	0	0
ERN2	10595	broad.mit.edu	37	16	23716367	23716367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:23716367C>T	uc002dma.3	-	8	1004	c.835G>A	c.(835-837)GGC>AGC	p.G279S	ERN2_uc010bxp.2_Missense_Mutation_p.G279S|ERN2_uc010bxq.1_Missense_Mutation_p.G87S	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	231	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		GTGTAGACGCCCATCACAGGC	0.677													4	48					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	24135197	24135197	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24135197G>A	uc002dmd.2	+	9	1157	c.960G>A	c.(958-960)AAG>AAA	p.K320K	PRKCB_uc002dme.2_Silent_p.K320K	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	320					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CGGAAGAAAAGACGACCAACA	0.478													6	55					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	24196455	24196456	+	Nonsense_Mutation	DNP	GA	AT	AT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24196455_24196456GA>AT	uc002dmd.2	+	14	1754_1755	c.1557_1558GA>AT	c.(1555-1560)GGGAAG>GGATAG	p.K520*	PRKCB_uc002dme.2_Nonsense_Mutation_p.K520*	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	520	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	AGCCCTATGGGAAGTCCGTGGA	0.441													4	113					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24358083	24358083	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24358083C>T	uc002dmf.2	+	2	1440	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	80					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GCAAGAAAATCGATCACTTCC	0.582													13	71					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372919	24372919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24372919G>A	uc002dmf.2	+	4	1883	c.683G>A	c.(682-684)AGG>AAG	p.R228K		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	228					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CCACCCTACAGGTATCGATTC	0.542													4	51					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24373066	24373066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24373066G>A	uc002dmf.2	+	4	2030	c.830G>A	c.(829-831)GGG>GAG	p.G277E		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	277					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ATCACCATGGGGACCCTCCTC	0.547													9	128					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24578672	24578672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24578672C>T	uc002dmh.2	+	15	2838	c.1798C>T	c.(1798-1800)CCT>TCT	p.P600S	RBBP6_uc010vcb.1_Missense_Mutation_p.P467S|RBBP6_uc002dmi.2_Missense_Mutation_p.P600S|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P467S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	600					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GTATAGTGTCCCTCCTCCAGG	0.348													29	348					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24580302	24580302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24580302G>A	uc002dmh.2	+	17	3331	c.2291G>A	c.(2290-2292)AGA>AAA	p.R764K	RBBP6_uc010vcb.1_Missense_Mutation_p.R631K|RBBP6_uc002dmi.2_Missense_Mutation_p.R730K|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.R597K	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	764					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CCCCCTTACAGACGCTATCAT	0.463													4	38					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24918042	24918042	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:24918042G>A	uc002dmu.2	+	11	1303	c.1071G>A	c.(1069-1071)TCG>TCA	p.S357S	SLC5A11_uc002dms.2_Silent_p.S293S|SLC5A11_uc010vcd.1_Silent_p.S322S|SLC5A11_uc002dmt.2_Missense_Mutation_p.G225R|SLC5A11_uc010vce.1_Silent_p.S287S|SLC5A11_uc010bxt.2_Silent_p.S293S|SLC5A11_uc002dmv.2_5'Flank	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	357	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CAGGCTGTTCGGACATCGCGT	0.552											OREG0023688	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	75					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25264346	25264346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:25264346G>A	uc002dod.3	-	3	1006	c.599C>T	c.(598-600)CCC>CTC	p.P200L	ZKSCAN2_uc010vcl.1_5'UTR|ZKSCAN2_uc002doe.2_Missense_Mutation_p.P200L	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	200					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		AGGAACCCAGGGAGAAGGCCG	0.438													12	146					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27448906	27448906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:27448906G>A	uc002doq.1	+	4	483	c.250G>A	c.(250-252)GAT>AAT	p.D84N	IL21R_uc002dor.1_Missense_Mutation_p.D84N|IL21R_uc002dos.1_Missense_Mutation_p.D84N	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	84	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CTGCCACATGGATGTATTCCA	0.557			T	BCL6	NHL								8	110					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30021292	30021292	+	Silent	SNP	C	T	T	rs148944042		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:30021292C>T	uc002dvm.2	-	2	352	c.252G>A	c.(250-252)TCG>TCA	p.S84S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Silent_p.S84S|DOC2A_uc002dvn.2_Silent_p.S84S|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Silent_p.S84S|DOC2A_uc002dvp.2_Silent_p.S84S|DOC2A_uc002dvq.2_Silent_p.S84S	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	84	Interaction with UNC13D and DYNLT1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						TGGCATCATCCGAGTCATAGC	0.647													8	92					0	0	1	0	0
ALDOA	226	broad.mit.edu	37	16	30080660	30080660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:30080660C>T	uc002dvw.2	+	9	1702	c.574C>T	c.(574-576)CTC>TTC	p.L192F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|ALDOA_uc002dvx.2_Missense_Mutation_p.L192F|ALDOA_uc002dvy.2_Missense_Mutation_p.L192F|ALDOA_uc002dvz.2_Missense_Mutation_p.L192F|ALDOA_uc002dwa.3_Missense_Mutation_p.L192F|ALDOA_uc002dwb.1_Missense_Mutation_p.L192F|ALDOA_uc002dwc.2_Missense_Mutation_p.L192F|ALDOA_uc010veg.1_Missense_Mutation_p.L246F|ALDOA_uc002dwd.2_Missense_Mutation_p.L196F	NM_184043	NP_908932	P04075	ALDOA_HUMAN	fructose-bisphosphate aldolase A	192					actin filament organization|ATP biosynthetic process|fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|muscle cell homeostasis|platelet activation|platelet degranulation|protein homotetramerization|regulation of cell shape|striated muscle contraction	actin cytoskeleton|cytosol|extracellular vesicular exosome|I band|platelet alpha granule lumen	actin binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding|tubulin binding			lung(1)	1						GCCTGAGATCCTCCCTGATGG	0.597											OREG0023729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	126					0	0	1	0	0
PPP4C	5531	broad.mit.edu	37	16	30095004	30095004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:30095004C>T	uc002dwe.2	+	7	650	c.506C>T	c.(505-507)CCC>CTC	p.P169L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|PPP4C_uc002dwf.2_Missense_Mutation_p.P169L|PPP4C_uc002dwg.2_RNA|PPP4C_uc002dwh.2_Missense_Mutation_p.P90L	NM_002720	NP_002711	P60510	PP4C_HUMAN	protein phosphatase 4, catalytic subunit	169					microtubule cytoskeleton organization|regulation of double-strand break repair via homologous recombination	centrosome|nucleus	metal ion binding|NF-kappaB-inducing kinase activity|protein binding|protein serine/threonine phosphatase activity	p.P169S(1)		skin(1)	1						GGCCTCTCCCCCTCCATCCAG	0.617													4	109					0	0	1	0	0
ZNF646	9726	broad.mit.edu	37	16	31092307	31092307	+	Silent	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31092307A>C	uc002eap.2	+	2	4951	c.4662A>C	c.(4660-4662)ACA>ACC	p.T1554T		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1554					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CCAACAAGACAGACCGACACT	0.552													9	96					0	0	1	0	0
PRSS36	146547	broad.mit.edu	37	16	31151930	31151930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31151930C>T	uc002ebd.2	-	13	2109	c.2050G>A	c.(2050-2052)GAG>AAG	p.E684K	PRSS36_uc010vff.1_Missense_Mutation_p.E459K|PRSS36_uc010vfg.1_Missense_Mutation_p.E679K|PRSS36_uc010vfh.1_Intron	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	684	Peptidase S1 3.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GAGCTCAGCTCCAGGAGGGCC	0.711													4	22					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31336347	31336347	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31336347C>T	uc002ebq.2	+	19	2456	c.2358C>T	c.(2356-2358)TTC>TTT	p.F786F	ITGAM_uc002ebr.2_Silent_p.F787F|ITGAM_uc010can.2_Silent_p.F192F|ITGAM_uc002ebs.1_Silent_p.F192F|ITGAM_uc010vfj.1_5'Flank	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	786	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CCTTCAGTTTCATGAGGTGAG	0.453													5	33					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31336837	31336837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31336837G>A	uc002ebq.2	+	21	2620	c.2522G>A	c.(2521-2523)CGA>CAA	p.R841Q	ITGAM_uc002ebr.2_Missense_Mutation_p.R842Q|ITGAM_uc010can.2_Missense_Mutation_p.R247Q|ITGAM_uc002ebs.1_Missense_Mutation_p.R247Q	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	841	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CGCTCACAGCGATCCTGGCGC	0.602													5	62					0	0	1	0	0
ARMC5	79798	broad.mit.edu	37	16	31471313	31471313	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31471313C>T	uc002ecc.2	+	1	997	c.468C>T	c.(466-468)CTC>CTT	p.L156L	ARMC5_uc010vfn.1_Silent_p.L251L|ARMC5_uc010vfo.1_Silent_p.L188L|ARMC5_uc002eca.3_Silent_p.L156L|ARMC5_uc010vfp.1_Silent_p.L156L|ARMC5_uc002ecb.2_Silent_p.L156L	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	156	ARM 1.						binding			pancreas(1)	1						GAGGCATACTCCCTTTGGGTA	0.587													9	116					0	0	1	0	0
AHSP	51327	broad.mit.edu	37	16	31539992	31539992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31539992C>T	uc002ecj.2	+	3	374	c.289C>T	c.(289-291)CAC>TAC	p.H97Y		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	97					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						GCTCCCGAGTCACCCACCGCC	0.582													4	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	31973434	31973434	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:31973434G>A	uc002ect.2	+	1		c.26G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H186.																		GAGTCTGGGGGAGGCTTGGTC	0.562													11	116					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32077592	32077592	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:32077592C>T	uc010vfu.1	+	1		c.34C>T								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		GCCGATTCACCATCTCCAGGG	0.522													19	738					0	0	1	0	0
GPT2	84706	broad.mit.edu	37	16	46956287	46956287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:46956287C>T	uc002eel.2	+	9	1265	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S	GPT2_uc002eem.2_Missense_Mutation_p.P291S|GPT2_uc002een.2_5'Flank	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	391					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding	p.P391L(1)		ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGTCGTGAACCCCCCGGTGGC	0.637													7	147					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48162624	48162624	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:48162624G>C	uc002efc.1	-	9	1607	c.1261C>G	c.(1261-1263)CCA>GCA	p.P421A	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.P421A	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	421						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ATGTAAGATGGGGGGCTTTTA	0.403													7	106					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48177869	48177869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:48177869G>A	uc002efc.1	-	2	573	c.227C>T	c.(226-228)ACC>ATC	p.T76I	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.T76I|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	76						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TGGGGGCAGGGTGTCTACGGT	0.483													8	97					0	0	1	0	0
C16orf78	123970	broad.mit.edu	37	16	49407898	49407898	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:49407898G>A	uc002efr.2	+	1	91	c.48G>A	c.(46-48)AGG>AGA	p.R16R		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	16										central_nervous_system(1)	1						CCACAAAGAGGAAATACATGT	0.532													4	116					0	0	1	0	0
HEATR3	55027	broad.mit.edu	37	16	50106595	50106595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:50106595C>T	uc002efw.2	+	5	754	c.592C>T	c.(592-594)CCT>TCT	p.P198S	HEATR3_uc002efx.2_Missense_Mutation_p.P112S	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	198							binding			ovary(1)|skin(1)	2						AAGTAGGTTTCCTACCAATGT	0.348													11	96					0	0	1	0	0
SNX20	124460	broad.mit.edu	37	16	50707795	50707795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:50707795C>T	uc002egk.2	-	4	646	c.473G>A	c.(472-474)CGG>CAG	p.R158Q	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	158	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						CAGGGCGCGCCGACGCTCACA	0.642													6	44					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50763788	50763788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:50763788G>A	uc002egm.1	+	11	3131	c.3026G>A	c.(3025-3027)AGG>AAG	p.R1009K	NOD2_uc010vgq.1_Missense_Mutation_p.R54K	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	1009					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GCCCTTGAAAGGAATGACACC	0.328													6	58					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51172972	51172972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51172972C>T	uc010vgs.1	-	2	3192	c.3161G>A	c.(3160-3162)CGA>CAA	p.R1054Q	SALL1_uc010vgr.1_Missense_Mutation_p.R957Q|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1054					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGCAGATCTCGCATCTGATG	0.473													3	48					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174368	51174368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51174368C>T	uc010vgs.1	-	2	1796	c.1765G>A	c.(1765-1767)GGC>AGC	p.G589S	SALL1_uc010vgr.1_Missense_Mutation_p.G492S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	589					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTGACTGAGCCTGGGGGGCTG	0.637													7	63					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174417	51174417	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51174417C>T	uc010vgs.1	-	2	1747	c.1716G>A	c.(1714-1716)ACG>ACA	p.T572T	SALL1_uc010vgr.1_Silent_p.T475T|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	572					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTGGCTCTTCCGTCTTGATGA	0.607													7	83					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174567	51174567	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51174567C>T	uc010vgs.1	-	2	1597	c.1566G>A	c.(1564-1566)ACG>ACA	p.T522T	SALL1_uc010vgr.1_Silent_p.T425T|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	522					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCCAGTACTCGTGGGGATAT	0.517													16	141					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174734	51174734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51174734G>A	uc010vgs.1	-	2	1430	c.1399C>T	c.(1399-1401)CAC>TAC	p.H467Y	SALL1_uc010vgr.1_Missense_Mutation_p.H370Y|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	467	C2H2-type 1.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GAACGCAAGTGGATCTGCAAG	0.517													19	128					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174860	51174860	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:51174860G>C	uc010vgs.1	-	2	1304	c.1273C>G	c.(1273-1275)CAA>GAA	p.Q425E	SALL1_uc010vgr.1_Missense_Mutation_p.Q328E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	425					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTTTTTCTTTGCTGGGCCAAG	0.498													18	160					0	0	1	0	0
MMP2	4313	broad.mit.edu	37	16	55530938	55530938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:55530938G>A	uc002ehz.3	+	10	1884	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	MMP2_uc010vhd.1_Missense_Mutation_p.E449K|MMP2_uc010ccc.2_Missense_Mutation_p.E475K|MMP2_uc002eia.3_Missense_Mutation_p.E22K	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	525	Required for inhibitor TIMP2 binding.|Hemopexin-like 2.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TGCGGTATACGAGGCCCCACA	0.612													11	120					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55734085	55734085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:55734085C>T	uc002eif.2	+	13	1736	c.1625C>T	c.(1624-1626)CCA>CTA	p.P542L	SLC6A2_uc010ccd.2_Intron|SLC6A2_uc002eig.2_Missense_Mutation_p.P542L|SLC6A2_uc002eih.2_Missense_Mutation_p.P542L|SLC6A2_uc002eii.2_Missense_Mutation_p.P437L|SLC6A2_uc002eij.2_Missense_Mutation_p.P256L	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	542					synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	AACTTCAAGCCACTCACCTAC	0.393													10	113					0	0	1	0	0
CES1	1066	broad.mit.edu	37	16	55855409	55855409	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:55855409C>T	uc002eim.2	-	5	669	c.561G>A	c.(559-561)GGG>GGA	p.G187G	CES1_uc002eil.2_Silent_p.G188G|CES1_uc002ein.2_Silent_p.G187G	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	187					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	GACCCCAGTTCCCCCGGCTGT	0.597													6	67					0	0	1	0	0
NUP93	9688	broad.mit.edu	37	16	56867157	56867157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:56867157C>T	uc002eka.2	+	13	1497	c.1376C>T	c.(1375-1377)CCC>CTC	p.P459L	NUP93_uc002ekb.2_Missense_Mutation_p.P336L|NUP93_uc010vhi.1_Missense_Mutation_p.P336L	NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	459					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						AACCAGCAACCCTTCCTCTAC	0.552													19	172					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56904115	56904115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:56904115G>A	uc010ccm.2	+	5	738	c.709G>A	c.(709-711)GGC>AGC	p.G237S	SLC12A3_uc002ekd.3_Missense_Mutation_p.G237S|SLC12A3_uc010ccn.2_Missense_Mutation_p.G236S	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	237	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GCACACGGTGGGCTTTGCAGA	0.657													4	55					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56936405	56936405	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:56936405G>A	uc010ccm.2	+	24	2870	c.2841G>A	c.(2839-2841)ACG>ACA	p.T947T	SLC12A3_uc002ekd.3_Silent_p.T956T|SLC12A3_uc010ccn.2_Silent_p.T955T	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	947	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	AGGAGATTACGAAGAACAGAG	0.582													7	93					0	0	1	0	0
TEPP	374739	broad.mit.edu	37	16	58011902	58011902	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:58011902T>G	uc002emw.3	+	2	384	c.347T>G	c.(346-348)CTT>CGT	p.L116R	TEPP_uc002emv.3_Missense_Mutation_p.L116R	NM_199456	NP_955535	Q6URK8	TEPP_HUMAN	testis/prostate/placenta-expressed protein	116						extracellular region				kidney(1)|central_nervous_system(1)|skin(1)	3						AAGGCCTGCCTTCCTGATGAG	0.627													4	55					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314173	58314173	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:58314173G>A	uc002enf.2	-	7	1538	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	PRSS54_uc002eng.2_Silent_p.I381I|PRSS54_uc010vie.1_Silent_p.I282I|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	381					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AAACCAAGATGATTTCTTCGG	0.478													5	82					0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58589330	58589330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:58589330G>A	uc002env.2	-	21	3009	c.2716C>T	c.(2716-2718)CCT>TCT	p.P906S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.P901S|CNOT1_uc002enx.2_Missense_Mutation_p.P906S|CNOT1_uc002enz.1_Missense_Mutation_p.P335S	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	906					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TCTTTATCAGGATACTGGGGA	0.383													6	113					0	0	1	0	0
KCTD19	146212	broad.mit.edu	37	16	67323518	67323518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:67323518C>T	uc002esu.2	-	16	2786	c.2735G>A	c.(2734-2736)AGG>AAG	p.R912K	KCTD19_uc002est.2_Missense_Mutation_p.R684K|KCTD19_uc010vjj.1_Missense_Mutation_p.R655K	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	912						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		AGAGACAGACCTAGACAGGCC	0.537													11	121					0	0	1	0	0
ACD	65057	broad.mit.edu	37	16	67694180	67694180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:67694180C>T	uc002etq.3	-	1	539	c.202G>A	c.(202-204)GCC>ACC	p.A68T	ACD_uc002etp.3_Missense_Mutation_p.A68T|ACD_uc002etr.3_Missense_Mutation_p.A68T|ACD_uc010vjt.1_Missense_Mutation_p.A58T|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	68					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGCGCCCAGGCCCCGCCTTTC	0.731													4	48					0	0	1	0	0
PARD6A	50855	broad.mit.edu	37	16	67696356	67696356	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:67696356A>C	uc002ett.2	+	3	938	c.847A>C	c.(847-849)AGT>CGT	p.S283R	ACD_uc002etp.3_5'Flank|ACD_uc002etq.3_5'Flank|ACD_uc002etr.3_5'Flank|ACD_uc010vjt.1_5'Flank|PARD6A_uc002ets.2_Missense_Mutation_p.S282R|PARD6A_uc002etu.2_Missense_Mutation_p.S107R	NM_016948	NP_058644	Q9NPB6	PAR6A_HUMAN	par-6 partitioning defective 6 homolog alpha	283					cell cycle|cell division|cell-cell junction maintenance|tight junction assembly|viral reproduction	cytosol|nucleus|ruffle|tight junction	GTP-dependent protein binding|Rho GTPase binding|transcription factor binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CGATGACAGCAGTGACCTGGT	0.632													4	54					0	0	1	0	0
EDC4	23644	broad.mit.edu	37	16	67913806	67913806	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:67913806T>C	uc002eur.2	+	16	2041	c.1875T>C	c.(1873-1875)AGT>AGC	p.S625S	EDC4_uc010cer.2_Silent_p.S244S|EDC4_uc010vkg.1_Silent_p.S557S|EDC4_uc002eus.2_Silent_p.S355S|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	625	Ser-rich.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		gcagcagcagtagcagcagcT	0.438													3	43					0	0	1	0	0
ESRP2	80004	broad.mit.edu	37	16	68268011	68268011	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:68268011C>T	uc010cfa.1	-	3	516	c.328_splice	c.e3-1	p.F110_splice	ESRP2_uc002evp.1_5'Flank|ESRP2_uc002evq.1_Splice_Site_p.F110_splice	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B						mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						GCTGTGAGAACTGGGGATAGG	0.602													3	14					0	0	1	0	0
CDH1	999	broad.mit.edu	37	16	68856025	68856025	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:68856025C>T	uc002ewg.1	+	12	1957	c.1833C>T	c.(1831-1833)GTC>GTT	p.V611V	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Silent_p.V550V	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	611	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding			breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		AGCCTCAGGTCATAAACATCA	0.493			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				7	111					0	0	1	0	0
TMCO7	79613	broad.mit.edu	37	16	68961601	68961601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:68961601C>T	uc002ewi.3	+	13	2270	c.2258C>T	c.(2257-2259)GCC>GTC	p.A753V		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	753						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		ACCCATGGAGCCTTTGCCACT	0.493													17	187					0	0	1	0	0
NFAT5	10725	broad.mit.edu	37	16	69693672	69693672	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:69693672C>T	uc002exm.1	+	6	2393	c.1185C>T	c.(1183-1185)GTC>GTT	p.V395V	NFAT5_uc002exh.1_Silent_p.V189V|NFAT5_uc002exi.2_Silent_p.V319V|NFAT5_uc002exj.1_Silent_p.V319V|NFAT5_uc002exk.1_Silent_p.V319V|NFAT5_uc002exl.1_Silent_p.V413V|NFAT5_uc002exn.1_Silent_p.V413V	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	395	RHD.				excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						ATGCTGATGTCGAAGCCAGAA	0.373													14	100					0	0	1	0	0
WWP2	11060	broad.mit.edu	37	16	69969857	69969857	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:69969857C>T	uc002exu.1	+	19	2033	c.1944C>T	c.(1942-1944)GAC>GAT	p.D648D	WWP2_uc002exv.1_Silent_p.D648D|WWP2_uc010vlm.1_Silent_p.D532D|WWP2_uc010vln.1_Silent_p.D266D|WWP2_uc002exw.1_Silent_p.D209D	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	648	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						AGTCCATTGACCCTGAGTTCT	0.547													11	141					0	0	1	0	0
SF3B3	23450	broad.mit.edu	37	16	70599145	70599145	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:70599145C>T	uc002ezf.2	+	19	2852	c.2641C>T	c.(2641-2643)CAG>TAG	p.Q881*		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	881					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GGACCTTGTCCAGCTGGAACA	0.537													9	55					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70841627	70841627	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:70841627G>A	uc002ezr.2	-	86	15347	c.15219C>T	c.(15217-15219)ATC>ATT	p.I5073I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5074										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGATGTTGTTGATCTTCTTGG	0.522													14	115					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70841757	70841757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:70841757G>A	uc002ezr.2	-	86	15217	c.15089C>T	c.(15088-15090)TCG>TTG	p.S5030L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5031										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGCTCGGATCGAGAAGGGACC	0.532													5	95					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70889118	70889118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:70889118G>A	uc002ezr.2	-	73	12481	c.12353C>T	c.(12352-12354)TCC>TTC	p.S4118F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4119										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTCCTGGAAGGAAAAATCGAA	0.527													5	65					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70995872	70995872	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:70995872G>A	uc002ezr.2	-	38	6083	c.5955C>T	c.(5953-5955)ATC>ATT	p.I1985I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1986										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTGGAAAATGATTTTTTCCA	0.433													4	37					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71008183	71008183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:71008183G>A	uc002ezr.2	-	33	5055	c.4927C>T	c.(4927-4929)CGT>TGT	p.R1643C		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1644										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTCTTTACACGATCTAGCTCA	0.428													3	11					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71127806	71127806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:71127806C>T	uc002ezr.2	-	11	1488	c.1360G>A	c.(1360-1362)GGG>AGG	p.G454R	HYDIN_uc010cfz.1_Missense_Mutation_p.G199R|HYDIN_uc002ezv.2_Missense_Mutation_p.G454R|HYDIN_uc010vmc.1_Missense_Mutation_p.G471R|HYDIN_uc010vmd.1_Missense_Mutation_p.G481R|HYDIN_uc002ezw.3_Missense_Mutation_p.G471R	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	454										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATGCCTTCCCCTTTGATTCGG	0.428													8	48					0	0	1	0	0
ZNF23	7571	broad.mit.edu	37	16	71482644	71482644	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:71482644G>A	uc002faf.2	-	6	2098	c.1284C>T	c.(1282-1284)GCC>GCT	p.A428A	ZNF23_uc002fad.2_Silent_p.A370A|ZNF23_uc002fae.2_Silent_p.A370A|ZNF23_uc010vmf.1_Silent_p.A370A|ZNF23_uc002fag.2_Silent_p.A370A|ZNF23_uc002fah.2_Silent_p.A428A|ZNF23_uc002fai.2_Silent_p.A467A	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	428	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		TACATCTGAAGGCTTTCCCGC	0.463													4	75					0	0	1	0	0
DHODH	1723	broad.mit.edu	37	16	72057474	72057474	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:72057474A>T	uc002fbp.2	+	8	1096	c.1075A>T	c.(1075-1077)ACC>TCC	p.T359S	DHODH_uc010cgk.2_RNA	NM_001361	NP_001352	Q02127	PYRD_HUMAN	dihydroorotate dehydrogenase precursor	359	Mitochondrial intermembrane (By similarity).				'de novo' pyrimidine base biosynthetic process|pyrimidine nucleoside biosynthetic process|UMP biosynthetic process	integral to membrane|mitochondrial inner membrane	dihydroorotate oxidase activity				0		Ovarian(137;0.125)			Atovaquone(DB01117)|Leflunomide(DB01097)	CACGGCCCTCACCTTCTGGGG	0.607													8	67					0	0	1	0	0
DHODH	1723	broad.mit.edu	37	16	72057476	72057476	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:72057476C>T	uc002fbp.2	+	8	1098	c.1077C>T	c.(1075-1077)ACC>ACT	p.T359T	DHODH_uc010cgk.2_RNA	NM_001361	NP_001352	Q02127	PYRD_HUMAN	dihydroorotate dehydrogenase precursor	359	Mitochondrial intermembrane (By similarity).				'de novo' pyrimidine base biosynthetic process|pyrimidine nucleoside biosynthetic process|UMP biosynthetic process	integral to membrane|mitochondrial inner membrane	dihydroorotate oxidase activity				0		Ovarian(137;0.125)			Atovaquone(DB01117)|Leflunomide(DB01097)	CGGCCCTCACCTTCTGGGGGC	0.607													8	66					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72164190	72164190	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:72164190C>T	uc002fcc.3	-	12	1891	c.1719G>A	c.(1717-1719)AAG>AAA	p.K573K	PMFBP1_uc002fcd.2_Silent_p.K568K|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Silent_p.K423K|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	573	Potential.									ovary(2)	2		Ovarian(137;0.179)				GCCTCTTTTCCTTGTCTGAAT	0.473													6	68					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72829798	72829798	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:72829798G>A	uc002fck.2	-	9	7456	c.6783C>T	c.(6781-6783)TTC>TTT	p.F2261F	ZFHX3_uc002fcl.2_Silent_p.F1347F	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2261	Homeobox 2.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CATTGGCATCGAAGAAGTCCT	0.493													24	257					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72830293	72830293	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:72830293G>A	uc002fck.2	-	9	6961	c.6288C>T	c.(6286-6288)ATC>ATT	p.I2096I	ZFHX3_uc002fcl.2_Silent_p.I1182I	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2096					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCGGCGAGAAGATGGGCAGCT	0.662													11	106					0	0	1	0	0
ZFP1	162239	broad.mit.edu	37	16	75203589	75203589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:75203589C>T	uc002fdo.2	+	4	745	c.581C>T	c.(580-582)TCC>TTC	p.S194F	ZFP1_uc002fdp.2_Missense_Mutation_p.S139F|ZFP1_uc010cgt.2_Missense_Mutation_p.S161F|ZFP1_uc010cgs.2_Missense_Mutation_p.S139F|ZFP1_uc002fdq.2_Missense_Mutation_p.S194F	NM_153688	NP_710155	Q6P2D0	ZFP1_HUMAN	zinc finger protein 1 homolog	194	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AAGGCTTTCTCCTTTAAGTCA	0.373													7	41					0	0	1	0	0
CHST5	23563	broad.mit.edu	37	16	75563245	75563245	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:75563245C>T	uc002fei.2	-	3	2433	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R	CHST5_uc002fej.1_Silent_p.R352R	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	346	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						TGCGCGCATTCCTAGACGAAG	0.662													13	117					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77317854	77317854	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:77317854C>T	uc002ffc.3	-	23	4084	c.3665G>A	c.(3664-3666)TGA>TAA	p.*1222*		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1222					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ACACCAAGATCAGATCTTCCT	0.507													4	47					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389842	77389842	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:77389842G>A	uc002ffc.3	-	9	1874	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	ADAMTS18_uc010chc.1_Silent_p.F73F|ADAMTS18_uc002ffe.1_Silent_p.F181F|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	485	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CATACCTGAGGAATTTCTTGA	0.473													6	72					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78056613	78056613	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:78056613G>A	uc002ffh.3	+	1	171	c.90G>A	c.(88-90)AGG>AGA	p.R30R		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	30					skeletal system development	extracellular region	sugar binding				0						TAAAAGCCAGGAAGCACAGCA	0.483													5	60					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80718715	80718715	+	Silent	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:80718715G>C	uc002ffs.2	-	2	441	c.336C>G	c.(334-336)CCC>CCG	p.P112P		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	112						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GCTTGGCCAGGGGAGGGTTAA	0.547													7	50					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81211533	81211533	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81211533G>A	uc002fgh.1	-	14	2316	c.2316C>T	c.(2314-2316)CCC>CCT	p.P772P	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_Silent_p.P87P|PKD1L2_uc002fgj.2_Silent_p.P772P|PKD1L2_uc002fgk.1_5'UTR|PKD1L2_uc002fgl.1_Intron	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	772	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCACCTCACGGGGAGGCACAG	0.587													5	83					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81213265	81213265	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81213265G>A	uc002fgh.1	-	13	2245	c.2245C>T	c.(2245-2247)CGA>TGA	p.R749*	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_Nonsense_Mutation_p.R64*|PKD1L2_uc002fgj.2_Nonsense_Mutation_p.R749*|PKD1L2_uc002fgk.1_5'Flank|PKD1L2_uc002fgl.1_Nonsense_Mutation_p.R64*	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	749	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCTCTGATTCGGATGACCTCT	0.493													7	102					0	0	1	0	0
GAN	8139	broad.mit.edu	37	16	81399011	81399011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81399011G>A	uc002fgo.2	+	9	1578	c.1430G>A	c.(1429-1431)CGA>CAA	p.R477Q		NM_022041	NP_071324	Q9H2C0	GAN_HUMAN	gigaxonin	477	Kelch 5.				cell death	cytoplasm|neurofilament	protein binding			ovary(2)	2		Colorectal(91;0.153)				GGGGGAGTCCGAAGTCGTGAG	0.498													21	203					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81888083	81888083	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81888083G>A	uc002fgt.2	+	3	380	c.228G>A	c.(226-228)GGG>GGA	p.G76G	PLCG2_uc010chg.1_Silent_p.G76G	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	76	PH.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TCCGCCCAGGGAAGAACTCCA	0.468													8	99					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81941314	81941314	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81941314A>G	uc002fgt.2	+	16	1644	c.1492A>G	c.(1492-1494)ATT>GTT	p.I498V	PLCG2_uc010chg.1_Missense_Mutation_p.I498V	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	498					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CTACTGCGCCATTGCCGATGC	0.557													6	85					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81954867	81954867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:81954867C>T	uc002fgt.2	+	21	2452	c.2300C>T	c.(2299-2301)CCG>CTG	p.P767L	PLCG2_uc010chg.1_Missense_Mutation_p.P767L	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	767					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GAAATCAATCCGTCCATGGTA	0.438													6	58					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82034440	82034440	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:82034440C>T	uc002fgu.2	-	2	152	c.24G>A	c.(22-24)AAG>AAA	p.K8K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	8					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GGACACTTTCCTTTTGAGATC	0.378													10	68					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83711990	83711990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:83711990G>A	uc002fgx.2	+	10	1582	c.1462G>A	c.(1462-1464)GAG>AAG	p.E488K	CDH13_uc010vns.1_Missense_Mutation_p.E535K|CDH13_uc010vnt.1_Missense_Mutation_p.E234K|CDH13_uc010vnu.1_Missense_Mutation_p.E449K	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	488	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GACCAGGCAGGAGGACCTCTC	0.622													6	82					0	0	1	0	0
TAF1C	9013	broad.mit.edu	37	16	84213270	84213270	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:84213270G>A	uc002fhn.2	-	14	2115	c.1887C>T	c.(1885-1887)ACC>ACT	p.T629T	TAF1C_uc002fhm.2_Silent_p.T535T|TAF1C_uc010vnx.1_Silent_p.T603T|TAF1C_uc010vny.1_Silent_p.T220T|TAF1C_uc010vnz.1_Silent_p.T297T|TAF1C_uc002fho.2_Silent_p.T152T|TAF1C_uc010voa.1_Silent_p.T297T|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	629					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						TGTCCTGGGAGGTCCAGGAAG	0.667													4	18					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89254618	89254618	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:89254618G>A	uc002fmt.2	+	7	980	c.903G>A	c.(901-903)CTG>CTA	p.L301L		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	301	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		TCACCATCCTGGAAGGCGACC	0.642													3	29					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89351792	89351792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:89351792C>T	uc002fmx.1	-	9	1619	c.1158G>A	c.(1156-1158)ATG>ATA	p.M386I	ANKRD11_uc002fmy.1_Missense_Mutation_p.M386I|ANKRD11_uc002fnc.1_Missense_Mutation_p.M386I|ANKRD11_uc002fnb.1_Missense_Mutation_p.M343I	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	386						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TTTTAACCTCCATTTTGGGTA	0.458													5	88					0	0	1	0	0
FANCA	2175	broad.mit.edu	37	16	89831331	89831331	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr16:89831331G>A	uc002fou.1	-	28	2787	c.2745C>T	c.(2743-2745)ACC>ACT	p.T915T	FANCA_uc010vpn.1_Silent_p.T915T|FANCA_uc010vpo.1_Silent_p.T44T	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	915					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		CCTCTCGGAAGGTTCTGTGTG	0.552			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				9	86					0	0	1	0	0
ABR	29	broad.mit.edu	37	17	915214	915214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:915214G>A	uc002fsd.2	-	19	2083	c.1973C>T	c.(1972-1974)TCC>TTC	p.S658F	ABR_uc002fse.2_Missense_Mutation_p.S612F|ABR_uc010vqf.1_Missense_Mutation_p.S109F|ABR_uc010vqg.1_Missense_Mutation_p.S440F|ABR_uc002fsg.2_Missense_Mutation_p.S621F|ABR_uc002fsh.1_Intron|ABR_uc002fsf.2_Missense_Mutation_p.S195F	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	658	Rho-GAP.			RSKV -> VQGA (in Ref. 2; AAC37519).	apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GGGCACCTTGGAGCGCTCCCG	0.647													12	142					0	0	1	0	0
SLC43A2	124935	broad.mit.edu	37	17	1519997	1519997	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:1519997T>C	uc002fsv.2	-	3	316	c.227A>G	c.(226-228)AAC>AGC	p.N76S	SLC43A2_uc002fsu.2_Missense_Mutation_p.N76S|SLC43A2_uc002fsw.2_Missense_Mutation_p.N76S|SLC43A2_uc002fsx.2_Missense_Mutation_p.N76S	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	76					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		GAGCCAGCCGTTCATCCAGCT	0.602													7	57					0	0	1	0	0
SCARF1	8578	broad.mit.edu	37	17	1538384	1538384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:1538384C>T	uc002fsz.1	-	11	2211	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.E635K	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	721	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		ACCTTGGCTTCCGCCTGGCCT	0.632													8	48					0	0	1	0	0
RILP	83547	broad.mit.edu	37	17	1549852	1549852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:1549852G>A	uc002ftd.2	-	8	1384	c.1090C>T	c.(1090-1092)CCC>TCC	p.P364S	SCARF1_uc002fsy.1_5'Flank|SCARF1_uc002fsz.1_5'Flank|SCARF1_uc002fta.1_5'Flank|SCARF1_uc010cjv.1_5'Flank	NM_031430	NP_113618	Q96NA2	RILP_HUMAN	Rab interacting lysosomal protein	364					endosome to lysosome transport|protein transport	late endosome membrane|lysosomal membrane|phagocytic vesicle membrane	Rab GTPase binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AGCTTGCTGGGTGCAGGGCTG	0.597													27	253					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1559773	1559773	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:1559773G>A	uc002fte.2	-	36	5820	c.5706C>T	c.(5704-5706)TTC>TTT	p.F1902F		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1902	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TGAGATCCCCGAATTTTTCCA	0.478													10	110					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1562737	1562737	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:1562737G>A	uc002fte.2	-	32	5166	c.5052C>T	c.(5050-5052)TTC>TTT	p.F1684F		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1684	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TGTAGTCCAGGAACTTGGCCC	0.547													25	246					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2203842	2203843	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:2203842_2203843GG>AA	uc002fub.1	-	2	259_260	c.204_205CC>TT	c.(202-207)CCCCCT>CCTTCT	p.P69S	SMG6_uc002fud.1_Missense_Mutation_p.P38S	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	69					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						TCACTCCCAGGGGGTTCCTTGA	0.47													9	122					0	0	1	0	0
SGSM2	9905	broad.mit.edu	37	17	2279163	2279163	+	Silent	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:2279163C>G	uc002fun.3	+	17	2518	c.2343C>G	c.(2341-2343)GCC>GCG	p.A781A	SGSM2_uc002fum.3_Silent_p.A826A|SGSM2_uc010vqw.1_Silent_p.A781A|SGSM2_uc002fup.1_5'UTR|SGSM2_uc002fuq.2_5'Flank	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	781	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		GTGCGGCTGCCTACACTGTGC	0.672													10	72					0	0	1	0	0
METT10D	79066	broad.mit.edu	37	17	2381128	2381128	+	Silent	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:2381128T>A	uc002fut.2	-	3	328	c.180A>T	c.(178-180)CTA>CTT	p.L60L	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Silent_p.L60L|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_5'UTR	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	60							methyltransferase activity				0						AATCTTCCCTTAGGAGAGTAC	0.393													17	117					0	0	1	0	0
OR3A1	4994	broad.mit.edu	37	17	3195499	3195499	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3195499G>A	uc002fvh.1	-	1	378	c.378C>T	c.(376-378)TTC>TTT	p.F126F		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						AGATGGCCAGGAATCGGTCAT	0.597													11	110					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3214566	3214566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3214566C>T	uc002fvi.2	+	1	1028	c.962C>T	c.(961-963)TCC>TTC	p.S321F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						GTGCAGAGTTCCCTATGCTGC	0.572													6	86					0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3447899	3447899	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3447899C>T	uc002fvt.1	-	4	607	c.285G>A	c.(283-285)GAG>GAA	p.E95E	TRPV3_uc010vrh.1_Silent_p.E79E|TRPV3_uc010vri.1_Intron|TRPV3_uc010vrj.1_Silent_p.E79E|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Silent_p.E79E|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Silent_p.E95E|TRPV3_uc002fvu.2_Silent_p.E95E	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	95	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	TGGATGGGGTCTCTGTCACAT	0.602													9	37					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3665244	3665244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3665244C>T	uc002fwo.3	-	4	379	c.280G>A	c.(280-282)GGA>AGA	p.G94R		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	94	FG-GAP 2.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ACGGTCACTCCCCGGTGCCTC	0.632													4	42					0	0	1	0	0
P2RX1	5023	broad.mit.edu	37	17	3801117	3801117	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3801117C>T	uc002fww.2	-	12	1632	c.1191G>A	c.(1189-1191)AGG>AGA	p.R397R		NM_002558	NP_002549	P51575	P2RX1_HUMAN	purinergic receptor P2X1	397	Cytoplasmic (Potential).				platelet activation	integral to plasma membrane	calcium channel activity|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity			ovary(1)|skin(1)	2				LUAD - Lung adenocarcinoma(2;1.9e-05)|Lung(3;0.0173)		ATCAGGATGTCCTCATGTTCT	0.652													6	63					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3846815	3846815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3846815G>A	uc002fxb.1	-	11	1440	c.1289C>T	c.(1288-1290)GCC>GTC	p.A430V	ATP2A3_uc002fwx.1_Missense_Mutation_p.A430V|ATP2A3_uc002fwy.1_Missense_Mutation_p.A430V|ATP2A3_uc002fwz.1_Missense_Mutation_p.A430V|ATP2A3_uc002fxa.1_Missense_Mutation_p.A430V|ATP2A3_uc002fxc.1_Missense_Mutation_p.A430V|ATP2A3_uc002fxd.1_Missense_Mutation_p.A430V	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	430	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CACACCCTTGGCCTGGCAAGG	0.627													22	195					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	3937374	3937374	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:3937374G>A	uc002fxe.2	-	40	6583	c.6519C>T	c.(6517-6519)TCC>TCT	p.S2173S	ZZEF1_uc002fxh.2_Silent_p.S487S|ZZEF1_uc002fxi.2_Silent_p.S408S|ZZEF1_uc002fxj.1_Silent_p.S786S	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2173							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGGCACAATGGAACTGTCCC	0.552													29	230					0	0	1	0	0
ANKFY1	51479	broad.mit.edu	37	17	4088262	4088262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:4088262G>A	uc002fxq.1	-	12	1588	c.1550C>T	c.(1549-1551)CCA>CTA	p.P517L	ANKFY1_uc002fxn.2_Missense_Mutation_p.P559L|ANKFY1_uc002fxo.2_Missense_Mutation_p.P517L|ANKFY1_uc002fxp.2_Missense_Mutation_p.P516L|ANKFY1_uc010ckp.2_Missense_Mutation_p.P458L	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	517	ANK 6.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						CTGCAGGTTTGGGTTGGCGCC	0.627													8	87					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4536740	4536740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:4536740C>T	uc002fyh.2	-	9	1231	c.1217G>A	c.(1216-1218)GGG>GAG	p.G406E	ALOX15_uc010vsd.1_Missense_Mutation_p.G367E|ALOX15_uc010vse.1_Missense_Mutation_p.G428E	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	406	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	AGAGACCAGCCCAGTCCTGGC	0.527													15	177					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4539212	4539212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:4539212C>T	uc002fyh.2	-	8	1017	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	ALOX15_uc010vsd.1_Missense_Mutation_p.D296N|ALOX15_uc010vse.1_Missense_Mutation_p.D357N	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	335	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	ATTGGGGGATCCGTAGGCAAG	0.607													12	107					0	0	1	0	0
ARRB2	409	broad.mit.edu	37	17	4623881	4623881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:4623881C>T	uc002fyj.2	+	14	1310	c.1082C>T	c.(1081-1083)GCC>GTC	p.A361V	ARRB2_uc002fyk.2_Missense_Mutation_p.A346V|ARRB2_uc002fyl.2_Missense_Mutation_p.A373V|ARRB2_uc010vsg.1_Missense_Mutation_p.A382V|ARRB2_uc002fym.2_Missense_Mutation_p.A358V|ARRB2_uc002fyn.2_Missense_Mutation_p.A169V|ARRB2_uc010ckq.2_Missense_Mutation_p.A169V|ARRB2_uc002fyo.2_Missense_Mutation_p.A169V	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	361	Interaction with TRAF6.				cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						GTCCCCCCAGCCGCTCCGGAG	0.587													3	48					0	0	1	0	0
MINK1	50488	broad.mit.edu	37	17	4788845	4788845	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:4788845C>T	uc010vsl.1	+	7	772	c.576C>T	c.(574-576)CCC>CCT	p.P192P	MINK1_uc010vsk.1_Silent_p.P192P|MINK1_uc010vsm.1_Silent_p.P192P|MINK1_uc010vsn.1_Silent_p.P192P|MINK1_uc010vso.1_Silent_p.P137P|MINK1_uc010vsp.1_5'UTR	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	192	Protein kinase.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						TTGGGACTCCCTACTGGATGG	0.567													17	146					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5045710	5045710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:5045710G>A	uc002gau.1	+	25	3961	c.1731G>A	c.(1729-1731)ATG>ATA	p.M577I	USP6_uc002gav.1_Missense_Mutation_p.M577I|USP6_uc010ckz.1_Missense_Mutation_p.M260I	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	577					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CCATTGGTATGAAGGGGCATA	0.423			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								9	75					0	0	1	0	0
ZNF594	84622	broad.mit.edu	37	17	5087336	5087336	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:5087336G>A	uc010cla.1	-	2	372	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						CTTTCTGGGGGATAATATGCA	0.448													15	117					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5456813	5456813	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:5456813G>A	uc002gci.2	-	5	2976	c.2421C>T	c.(2419-2421)ACC>ACT	p.T807T	NLRP1_uc002gcg.1_Silent_p.T807T|NLRP1_uc002gck.2_Silent_p.T807T|NLRP1_uc002gcj.2_Silent_p.T807T|NLRP1_uc002gcl.2_Silent_p.T807T|NLRP1_uc002gch.3_Silent_p.T807T|NLRP1_uc010clh.2_Silent_p.T807T	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	807					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TCAGGTTTCTGGTGACCTTGA	0.547													4	54					0	0	1	0	0
AIPL1	23746	broad.mit.edu	37	17	6330369	6330369	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:6330369G>A	uc002gcp.2	-	4	569	c.474C>T	c.(472-474)GCC>GCT	p.A158A	AIPL1_uc002gcq.2_Silent_p.A98A|AIPL1_uc002gcr.2_Silent_p.A95A|AIPL1_uc010clk.2_Silent_p.A136A|AIPL1_uc010cll.2_Silent_p.A158A|AIPL1_uc002gcs.2_Silent_p.A158A	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	158					protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		AATCACTCGGGGCATCAACCT	0.607													13	117					0	0	1	0	0
FBXO39	162517	broad.mit.edu	37	17	6683756	6683756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:6683756G>A	uc010vtg.1	+	2	689	c.569G>A	c.(568-570)AGG>AAG	p.R190K		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	190										ovary(1)|skin(1)	2						AGCTACATGAGGAATGAGAAT	0.488													5	55					0	0	1	0	0
FBXO39	162517	broad.mit.edu	37	17	6684051	6684051	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:6684051C>T	uc010vtg.1	+	2	984	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	288										ovary(1)|skin(1)	2						TGAACTTCTTCTTTGAACGGA	0.537													3	44					0	0	1	0	0
BCL6B	255877	broad.mit.edu	37	17	6927791	6927791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:6927791C>T	uc002geg.2	+	4	530	c.473C>T	c.(472-474)CCA>CTA	p.P158L	BCL6B_uc010clt.1_Missense_Mutation_p.P158L	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	158	Pro-rich.					nucleus	zinc ion binding			skin(1)	1						GCCCCTCCACCAGGTAGTCCC	0.637													16	155					0	0	1	0	0
SLC16A13	201232	broad.mit.edu	37	17	6942021	6942021	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:6942021C>T	uc002geh.2	+	3	1202	c.894C>T	c.(892-894)TTC>TTT	p.F298F		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	298	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						TAGCCCTGTTCCCTGTAGCTC	0.642													9	64					0	0	1	0	0
PHF23	79142	broad.mit.edu	37	17	7139346	7139346	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7139346G>A	uc002gfa.2	-	4	1127	c.900C>T	c.(898-900)AGC>AGT	p.S300S	DVL2_uc002gez.1_5'Flank|DVL2_uc010vtr.1_5'Flank|DVL2_uc010clz.1_5'Flank|PHF23_uc010vtt.1_Silent_p.S233S|PHF23_uc010cma.2_Silent_p.S170S	NM_024297	NP_077273	Q9BUL5	PHF23_HUMAN	PHD finger protein 23	300							zinc ion binding				0						CCACCTCCTTGCTTTCACTGT	0.602													34	293					0	0	1	0	0
SLC2A4	6517	broad.mit.edu	37	17	7189140	7189140	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7189140G>A	uc002gfp.2	+	10	1439	c.1239G>A	c.(1237-1239)CAG>CAA	p.Q413Q	SLC2A4_uc002gfo.2_Silent_p.Q413Q|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	413	Cytoplasmic (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						TCTTCAGCCAGGGACCCCGCC	0.577													7	73					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7222444	7222444	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7222444G>A	uc002gga.1	-	22	3616	c.3609C>T	c.(3607-3609)TTC>TTT	p.F1203F	NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Silent_p.F1201F	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1203	NHR 6.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						CAGAAGCAGGGAAGTTGAGCC	0.582													8	54					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7225034	7225034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7225034C>T	uc002gga.1	-	18	2951	c.2944G>A	c.(2944-2946)GAG>AAG	p.E982K	NEURL4_uc002gfy.1_5'Flank|GPS2_uc002gfz.1_5'Flank|NEURL4_uc002ggb.1_Missense_Mutation_p.E980K|NEURL4_uc002ggc.1_Missense_Mutation_p.E328K	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	982	NHR 5.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGTCCCATCTCCCCCGGTGCT	0.612													4	63					0	0	1	0	0
CHRNB1	1140	broad.mit.edu	37	17	7350371	7350371	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7350371G>A	uc002ghb.2	+	5	404	c.363G>A	c.(361-363)GGG>GGA	p.G121G	CHRNB1_uc010vty.1_Silent_p.G49G|CHRNB1_uc010vtz.1_5'UTR	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	121	Extracellular (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				GCAATGATGGGAATTTTGACG	0.463													12	103					0	0	1	0	0
CHRNB1	1140	broad.mit.edu	37	17	7350470	7350470	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7350470G>A	uc002ghb.2	+	5	503	c.462G>A	c.(460-462)CAG>CAA	p.Q154Q	CHRNB1_uc010vty.1_Silent_p.Q82Q|CHRNB1_uc010vtz.1_5'UTR	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	154	Extracellular (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				GCAGCATCCAGGTTTCCGGCC	0.582													3	49					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7576897	7576897	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7576897G>A	uc002gim.2	-	9	1143	c.949C>T	c.(949-951)CAG>TAG	p.Q317*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.Q317*|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Nonsense_Mutation_p.Q185*|TP53_uc010cng.1_Nonsense_Mutation_p.Q185*|TP53_uc002gii.1_Nonsense_Mutation_p.Q185*|TP53_uc010cnh.1_Nonsense_Mutation_p.Q317*|TP53_uc010cni.1_Nonsense_Mutation_p.Q317*|TP53_uc002gij.2_Nonsense_Mutation_p.Q317*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	317	Bipartite nuclear localization signal.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.		Q -> H (in a kidney cancer with no family history; germline mutation and in a sporadic cancer; somatic mutation).|Q -> P (in a sporadic cancer; somatic mutation).|Q -> K (in sporadic cancers; somatic mutation).|Q -> L (in a sporadic cancer; somatic mutation).|Q -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Q317*(19)|p.0?(7)|p.Q317K(3)|p.Q317R(2)|p.S315fs*22(1)|p.?(1)|p.S314fs*25(1)|p.L308fs*15(1)|p.Q317P(1)|p.Q317fs*28(1)|p.Q317fs*45(1)|p.Q317fs*19(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTCTTTGGCTGGGGAGAGGAG	0.473		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			7	78					0	0	1	0	0
WRAP53	55135	broad.mit.edu	37	17	7604846	7604846	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7604846C>T	uc010vuh.1	+	6	956	c.801C>T	c.(799-801)TCC>TCT	p.S267S	WRAP53_uc010vui.1_Silent_p.S267S|WRAP53_uc002gip.2_Silent_p.S267S|WRAP53_uc002gir.2_Silent_p.S267S|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Silent_p.S234S|WRAP53_uc010vuj.1_Silent_p.S48S	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	267	WD 2.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						TCCGGGCTTCCTTTCGCGCCT	0.607													13	151					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7691234	7691234	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7691234C>T	uc002giu.1	+	42	6674	c.6660C>T	c.(6658-6660)TCC>TCT	p.S2220S		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2220	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCACTGTATCCCGCTGCGGGA	0.532													6	49					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7707604	7707604	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7707604G>A	uc002giu.1	+	58	9017	c.9003G>A	c.(9001-9003)CTG>CTA	p.L3001L	DNAH2_uc010cnm.1_5'UTR	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3001	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGGAGCTGCTGGCCCAAGCCA	0.522													4	55					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7720015	7720015	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7720015T>C	uc002giu.1	+	63	9870	c.9856T>C	c.(9856-9858)TTG>CTG	p.L3286L	DNAH2_uc010cnm.1_Silent_p.L224L	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3286	Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CGTGTCGGGGTTGGCTGGCGA	0.562													9	98					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7984278	7984278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:7984278G>A	uc002gjy.1	-	4	712	c.451C>T	c.(451-453)CCT>TCT	p.P151S	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	151	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGCAGGCCAGGAAGAAAGACT	0.642										Multiple Myeloma(8;0.094)			7	80					0	0	1	0	0
ALOXE3	59344	broad.mit.edu	37	17	8015439	8015439	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:8015439G>A	uc010cnr.2	-	7	1126	c.756C>T	c.(754-756)ATC>ATT	p.I252I	ALOXE3_uc002gka.2_Silent_p.I408I|ALOXE3_uc010vuo.1_Silent_p.I384I|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	252	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						GGCACCAGAAGATGTTCTGCA	0.537													7	161					0	0	1	0	0
MYH10	4628	broad.mit.edu	37	17	8416954	8416954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:8416954C>T	uc002gll.2	-	21	2650	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	MYH10_uc002glm.2_Missense_Mutation_p.E883K|MYH10_uc010cnx.2_Missense_Mutation_p.E861K	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	852	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TGAAGTTCTTCCTCCTGGCGA	0.463													17	182					0	0	1	0	0
WDR16	146845	broad.mit.edu	37	17	9538775	9538775	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:9538775G>A	uc002gly.2	+	11	1443	c.1374G>A	c.(1372-1374)AAG>AAA	p.K458K	WDR16_uc002glz.2_Silent_p.K390K|WDR16_uc010coc.2_Silent_p.K468K	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	458						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGCCCTGAAGGAACACAAGT	0.532													8	82					0	0	1	0	0
DHRS7C	201140	broad.mit.edu	37	17	9680528	9680528	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:9680528T>C	uc010vvb.1	-	4	556	c.556A>G	c.(556-558)ATC>GTC	p.I186V	DHRS7C_uc010cof.2_Missense_Mutation_p.I185V	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	186						extracellular region	binding|oxidoreductase activity				0						CGGAACGGGATTCCAAACTTC	0.418													3	48					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10355638	10355638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10355638C>T	uc002gmn.2	-	27	3469	c.3358G>A	c.(3358-3360)GAG>AAG	p.E1120K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1120	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCCAGCTCCTCAATGCGGGCC	0.512													6	60					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10356177	10356177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10356177C>T	uc002gmn.2	-	25	3295	c.3184G>A	c.(3184-3186)GAC>AAC	p.D1062N	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1062	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AATTTTAGGTCACCCTCCAGT	0.338													12	98					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10356242	10356242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10356242C>T	uc002gmn.2	-	25	3230	c.3119G>A	c.(3118-3120)GGA>GAA	p.G1040E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1040	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTCCAGAGATCCTTCAAGCTA	0.353													7	75					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10366878	10366878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10366878G>A	uc002gmn.2	-	8	842	c.731C>T	c.(730-732)TCC>TTC	p.S244F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	244	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AAAGCGAGAGGAGTTGTCATT	0.438													10	92					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10398343	10398343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10398343C>T	uc002gmo.2	-	37	5465	c.5371G>A	c.(5371-5373)GAA>AAA	p.E1791K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1791	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ACCGTCTGTTCCAGGTTCTTC	0.562													20	145					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404775	10404775	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10404775C>T	uc002gmo.2	-	27	3484	c.3390G>A	c.(3388-3390)CGG>CGA	p.R1130R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1130	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCCGGGAGGCCCGCTCTGCCT	0.572													4	71					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10429115	10429115	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:10429115C>T	uc010coi.2	-	31	4394	c.4266G>A	c.(4264-4266)AAG>AAA	p.K1422K	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.K1422K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1422	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTGCTTCGTCTTTTCGAGGG	0.517													13	58					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11520840	11520840	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:11520840C>T	uc002gne.2	+	5	1085	c.1017C>T	c.(1015-1017)CTC>CTT	p.L339L		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	339	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGCCCCTGCTCCACGTGGTCT	0.597													12	88					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11522871	11522871	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:11522871A>G	uc002gne.2	+	6	1191	c.1123A>G	c.(1123-1125)AAT>GAT	p.N375D		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	375	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCAGGCCTCTAATTATCTCAG	0.433													7	104					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11572837	11572837	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:11572837C>T	uc002gne.2	+	17	3147	c.3079C>T	c.(3079-3081)CAG>TAG	p.Q1027*	DNAH9_uc010coo.2_Nonsense_Mutation_p.Q321*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1027	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGTTCTGGGTCAGTTTCTGCT	0.522													8	81					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11597723	11597723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:11597723G>A	uc002gne.2	+	22	4899	c.4831G>A	c.(4831-4833)GAT>AAT	p.D1611N	DNAH9_uc010coo.2_Missense_Mutation_p.D905N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1611	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTCCTCCTCCGATCTGTTAGA	0.567													5	55					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12656186	12656186	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:12656186G>A	uc002gnn.2	+	10	1880	c.1581G>A	c.(1579-1581)GTG>GTA	p.V527V	MYOCD_uc002gno.2_Silent_p.V527V|MYOCD_uc002gnp.1_Silent_p.V431V|MYOCD_uc002gnq.2_Silent_p.V246V	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	527	Potential.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGCAGAAGGTGATCAATGAAC	0.517													7	23					0	0	1	0	0
FAM18B2	201158	broad.mit.edu	37	17	15458665	15458665	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:15458665T>A	uc002goq.2	-	2	209	c.26A>T	c.(25-27)GAC>GTC	p.D9V	CDRT4_uc010vvw.1_5'UTR|FAM18B2_uc010vvx.1_Missense_Mutation_p.D9V|FAM18B2_uc010cor.2_Missense_Mutation_p.D9V	NM_145301	NP_660344	Q96ET8	F18B2_HUMAN	hypothetical protein LOC201158 isoform 1	9						integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0872)|BRCA - Breast invasive adenocarcinoma(8;0.0581)|READ - Rectum adenocarcinoma(1115;0.0967)		ATCTTCAGTGTCATCATTACT	0.398													13	84					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17698376	17698376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:17698376C>T	uc002grm.2	+	3	2583	c.2114C>T	c.(2113-2115)CCT>CTT	p.P705L	RAI1_uc002grn.1_Missense_Mutation_p.P705L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	705						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		ACAACTGGTCCTCTCTCCTTT	0.592													8	91					0	0	1	0	0
SREBF1	6720	broad.mit.edu	37	17	17723577	17723577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:17723577G>A	uc002gru.1	-	2	544	c.350C>T	c.(349-351)TCC>TTC	p.S117F	SREBF1_uc002grp.1_5'Flank|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_5'UTR|SREBF1_uc002grs.1_Missense_Mutation_p.S93F|SREBF1_uc002grt.1_Missense_Mutation_p.S147F|SREBF1_uc010cpp.1_Missense_Mutation_p.S93F|SREBF1_uc010cpq.1_Missense_Mutation_p.S117F	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	117	Pro/Ser-rich.|Cytoplasmic (Potential).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						AGGCCCAGGGGAGAAAGCGGG	0.662													8	106					0	0	1	0	0
LLGL1	3996	broad.mit.edu	37	17	18138547	18138547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:18138547C>T	uc002gsp.2	+	10	1266	c.1205C>T	c.(1204-1206)GCC>GTC	p.A402V		NM_004140	NP_004131	Q15334	L2GL1_HUMAN	lethal giant larvae homolog 1	402	WD 8.				cortical actin cytoskeleton organization|exocytosis|protein complex assembly	cortical actin cytoskeleton	protein kinase binding|structural molecule activity			breast(2)|skin(2)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)	6	all_neural(463;0.228)					GCCCACGTGGCCAGTGTCCCC	0.682													4	35					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19480770	19480770	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:19480770G>A	uc002gvy.1	+	17	1703	c.1617G>A	c.(1615-1617)AGG>AGA	p.R539R	SLC47A1_uc002gvx.2_Silent_p.R539R|SLC47A1_uc010vyz.1_3'UTR|SLC47A1_uc010cqp.1_Silent_p.R237R|SLC47A1_uc010cqq.1_Silent_p.R285R|SLC47A1_uc010vza.1_Silent_p.R251R|SLC47A1_uc010vzb.1_Silent_p.R214R|SLC47A1_uc010vzc.1_Silent_p.R211R	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	539	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					AATTGTCCAGGAAACAGCTGG	0.527													11	182					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20805531	20805531	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:20805531G>A	uc002gyg.1	+	4		c.715G>A			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		TGCCACCCAGGAAGTCTAATG	0.493													6	207					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319695	21319695	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:21319695G>A	uc002gyv.1	+	3	1746	c.1041G>A	c.(1039-1041)AAG>AAA	p.K347K		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	347	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	ACTTCCACAAGACCTATGAGG	0.567										Prostate(3;0.18)			9	206					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319775	21319775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:21319775C>T	uc002gyv.1	+	3	1826	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	374	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	AGCGCCAACTCCTTCTGCTAC	0.632										Prostate(3;0.18)			6	85					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542													5	89					0	0	1	0	0
ATAD5	79915	broad.mit.edu	37	17	29162098	29162098	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:29162098C>T	uc002hfs.1	+	2	1345	c.999C>T	c.(997-999)CCC>CCT	p.P333P	ATAD5_uc002hft.1_Silent_p.P230P	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	333					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				CTATTCCGCCCAAAAAGACAG	0.373													6	75					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29562747	29562747	+	Missense_Mutation	SNP	G	A	A	rs137854556		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:29562747G>A	uc002hgg.2	+	28	4160	c.3827G>A	c.(3826-3828)CGA>CAA	p.R1276Q	NF1_uc002hgh.2_Missense_Mutation_p.R1276Q|NF1_uc010csn.1_Missense_Mutation_p.R1136Q|NF1_uc002hgi.1_Missense_Mutation_p.R309Q	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1276	Ras-GAP.		R -> Q (in NF1 and mismatch repair deficient cancer cells).|R -> P (in NF1; complete loss of GAP activity).|R -> G (in NF1).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.R1276*(2)|p.?(2)|p.R1276Q(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ACTCTCTTCCGAGGCAACAGC	0.398			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			14	174					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29654799	29654799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:29654799C>T	uc002hgg.2	+	38	5884	c.5551C>T	c.(5551-5553)CCT>TCT	p.P1851S	NF1_uc002hgh.2_Missense_Mutation_p.P1830S|NF1_uc002hgi.1_Missense_Mutation_p.P863S|NF1_uc010cso.2_Missense_Mutation_p.P39S	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1851					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AAAAGATGTCCCTGGGACACT	0.458			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			15	103					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	31351016	31351016	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:31351016C>T	uc002hhu.2	-	6	1333	c.1059G>A	c.(1057-1059)AAG>AAA	p.K353K	ACCN1_uc002hht.2_Silent_p.K404K	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	353	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	AATTGCTGTCCTTTTCCGCCA	0.542													12	181					0	0	1	0	0
CCL1	6346	broad.mit.edu	37	17	32687585	32687586	+	Nonsense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:32687585_32687586CT>TA	uc002hid.1	-	3	355_356	c.283_284AG>TA	c.(283-285)AGA>TAA	p.R95*		NM_002981	NP_002972	P22362	CCL1_HUMAN	small inducible cytokine A1 precursor	95					cellular calcium ion homeostasis|chemotaxis|immune response|signal transduction|viral reproduction	extracellular space	chemokine activity				0		Ovarian(249;0.0443)|Breast(31;0.133)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)|BRCA - Breast invasive adenocarcinoma(366;0.155)		TGCTCATTTTCTTTTTGACGGG	0.505													5	70					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520640	33520640	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:33520640C>T	uc002hjd.2	-	1	773	c.687G>A	c.(685-687)GTG>GTA	p.V229V		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	229	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGCAGCCCCACCAAGCCAG	0.632													8	101					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520680	33520680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:33520680G>A	uc002hjd.2	-	1	733	c.647C>T	c.(646-648)CCC>CTC	p.P216L		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	216						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GAGGCAGGGGGGAAAGTGCAG	0.642													9	100					0	0	1	0	0
SLFN11	91607	broad.mit.edu	37	17	33690040	33690040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:33690040C>T	uc010ctp.2	-	4	1229	c.787G>A	c.(787-789)GAA>AAA	p.E263K	SLFN11_uc010ctq.2_Missense_Mutation_p.E263K|SLFN11_uc002hjh.3_Missense_Mutation_p.E263K|SLFN11_uc002hjg.3_Missense_Mutation_p.E263K|SLFN11_uc010ctr.2_Missense_Mutation_p.E263K	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	263						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TCAACATTTTCTTTTGCACAT	0.428													15	134					0	0	1	0	0
SLFN13	146857	broad.mit.edu	37	17	33767741	33767741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:33767741C>T	uc002hjk.1	-	4	2897	c.2567G>A	c.(2566-2568)CGA>CAA	p.R856Q	SLFN13_uc010wch.1_Missense_Mutation_p.R856Q|SLFN13_uc002hjl.2_Missense_Mutation_p.R856Q|SLFN13_uc010ctt.2_Missense_Mutation_p.R538Q|SLFN13_uc002hjm.2_Missense_Mutation_p.R525Q	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	856						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GCCTGAGAATCGCCGGACACT	0.493													19	206					0	0	1	0	0
AP2B1	163	broad.mit.edu	37	17	33984729	33984729	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:33984729C>T	uc002hjr.2	+	14	2097	c.1908C>T	c.(1906-1908)CTC>CTT	p.L636L	AP2B1_uc002hjq.2_Silent_p.L636L|AP2B1_uc010wci.1_Silent_p.L598L|AP2B1_uc002hjs.2_Silent_p.L579L|AP2B1_uc002hjt.2_Silent_p.L636L|AP2B1_uc010ctv.2_Silent_p.L636L|AP2B1_uc010wcj.1_Silent_p.L373L	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	636	Pro-rich (stalk region).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		ACCTTGACCTCGGTCCCCCAG	0.527													9	108					0	0	1	0	0
GGNBP2	79893	broad.mit.edu	37	17	34934591	34934591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:34934591C>T	uc002hnb.2	+	7	1069	c.820C>T	c.(820-822)CGT>TGT	p.R274C	GGNBP2_uc002hna.2_Missense_Mutation_p.R274C|GGNBP2_uc002hnc.1_Missense_Mutation_p.R103C	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	274					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		TCTTTTGGGTCGTGCTGAGCC	0.438													17	223					0	0	1	0	0
LHX1	3975	broad.mit.edu	37	17	35295497	35295497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:35295497G>A	uc002hnh.1	+	1	999	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc002hng.1_5'Flank|LHX1_uc010cux.1_5'Flank	NM_005568	NP_005559	P48742	LHX1_HUMAN	LIM homeobox protein 1	1					cerebellar Purkinje cell differentiation|cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation|cervix development|comma-shaped body morphogenesis|dorsal/ventral pattern formation|ectoderm formation|embryonic pattern specification|embryonic retina morphogenesis in camera-type eye|embryonic viscerocranium morphogenesis|endoderm formation|forebrain regionalization|head development|motor axon guidance|negative regulation of transcription, DNA-dependent|nephric duct morphogenesis|nephron tubule epithelial cell differentiation|neuron migration|oviduct epithelium development|paramesonephric duct development|positive regulation of anterior head development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of transcription, DNA-dependent|post-embryonic development|primitive streak formation|renal vesicle morphogenesis|retina layer formation|S-shaped body morphogenesis|spinal cord association neuron differentiation|transcription from RNA polymerase II promoter|ureteric bud development|uterine epithelium development|vagina development	nucleus|protein complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(25;0.00607)				CAAAGACCATGGTTCACTGTG	0.572													8	85					0	0	1	0	0
HNF1B	6928	broad.mit.edu	37	17	36099564	36099564	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:36099564C>T	uc002hok.3	-	2	632	c.411G>A	c.(409-411)AGG>AGA	p.R137R	HNF1B_uc010wdi.1_Silent_p.R137R	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	137					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			CGACCACCTCCCTCTGGGGGA	0.552									Hereditary_Prostate_Cancer				6	53					0	0	1	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288215	36288215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:36288215G>A	uc002hoo.2	+	6	458	c.301G>A	c.(301-303)GGA>AGA	p.G101R	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.G21R|TBC1D3_uc010cvf.1_Missense_Mutation_p.G101R|TBC1D3_uc002hoq.2_Missense_Mutation_p.G101R|TBC1D3_uc010wdk.1_Missense_Mutation_p.G162R|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	101	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGCGTACAAGGGAATGCCCAT	0.557													33	406					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36491997	36491997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:36491997C>T	uc002hpz.2	-	5	1279	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	420	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				AGGACAGTTTCCAGCAGGACC	0.552													12	127					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37188446	37188446	+	RNA	SNP	G	A	A	rs148983654		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37188446G>A	uc002hrd.1	+	1		c.2288G>A								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		AAACCTGACTGAAGTCACAGG	0.478													7	147					0	0	1	0	0
CACNB1	782	broad.mit.edu	37	17	37331556	37331557	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37331556_37331557GG>AA	uc002hrm.1	-	14	1839_1840	c.1686_1687CC>TT	c.(1684-1689)AACCGG>AATTGG	p.R563W	CACNB1_uc002hrl.1_Missense_Mutation_p.R335W	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	563					axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	CCCCGGTTCCGGTTGTCGGTCA	0.658											OREG0024371	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	271					0	0	1	0	0
STAC2	342667	broad.mit.edu	37	17	37371248	37371248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37371248C>T	uc002hrs.2	-	6	947	c.728G>A	c.(727-729)GGG>GAG	p.G243E	STAC2_uc010cvt.2_Missense_Mutation_p.G101E	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	SH3 and cysteine rich domain 2	243					intracellular signal transduction		metal ion binding			pancreas(1)	1						GCTGCCTTCCCCATCCTCGGT	0.627													42	379					0	0	1	0	0
STAC2	342667	broad.mit.edu	37	17	37373332	37373332	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37373332C>G	uc002hrs.2	-	3	711	c.492G>C	c.(490-492)AAG>AAC	p.K164N	STAC2_uc010cvt.2_Missense_Mutation_p.K22N	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	SH3 and cysteine rich domain 2	164					intracellular signal transduction		metal ion binding			pancreas(1)	1						CGCTCACCGTCTTGCCTGGGC	0.577													7	70					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37681010	37681010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37681010C>T	uc010cvv.2	+	12	3765	c.3179C>T	c.(3178-3180)CCA>CTA	p.P1060L	CDK12_uc010wef.1_Missense_Mutation_p.P1059L|CDK12_uc002hrw.3_Missense_Mutation_p.P1060L	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1060					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GTCGAAGAGCCACCTCCATCC	0.532										TCGA Ovarian(9;0.13)			11	116					0	0	1	0	0
PGAP3	93210	broad.mit.edu	37	17	37842191	37842191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37842191G>A	uc002hsj.2	-	2	306	c.263C>T	c.(262-264)CCT>CTT	p.P88L	ERBB2_uc002hsm.2_5'Flank|ERBB2_uc010cwa.2_5'Flank|PGAP3_uc010cvy.2_5'Flank|PGAP3_uc010wej.1_Missense_Mutation_p.P88L|PGAP3_uc002hsk.2_Missense_Mutation_p.P88L|PGAP3_uc010cvz.2_Missense_Mutation_p.P88L|ERBB2_uc002hsl.2_5'Flank	NM_033419	NP_219487	Q96FM1	PGAP3_HUMAN	per1-like domain containing 1 precursor	88	Lumenal (Potential).				GPI anchor biosynthetic process	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	hydrolase activity, acting on ester bonds			upper_aerodigestive_tract(1)	1						ATGGAACTGAGGCACTTTGTG	0.532													7	98					0	0	1	0	0
ERBB2	2064	broad.mit.edu	37	17	37866434	37866434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37866434C>T	uc002hso.2	+	6	977	c.739C>T	c.(739-741)CCC>TCC	p.P247S	ERBB2_uc002hsm.2_Missense_Mutation_p.P217S|ERBB2_uc010cwa.2_Missense_Mutation_p.P232S|ERBB2_uc002hsp.2_Missense_Mutation_p.P50S|ERBB2_uc010cwb.2_Missense_Mutation_p.P247S|ERBB2_uc010wek.1_Intron|ERBB2_uc002hsl.2_Missense_Mutation_p.P217S|ERBB2_uc002hsn.1_Missense_Mutation_p.P247S	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	247	Extracellular (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	CTGCACGGGCCCCAAGCACTC	0.642		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			6	94					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922608	37922608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:37922608G>A	uc002hsu.2	-	8	1027	c.965C>T	c.(964-966)CCC>CTC	p.P322L	IKZF3_uc002htd.2_Missense_Mutation_p.P288L|IKZF3_uc010cwd.2_Missense_Mutation_p.P179L|IKZF3_uc002hsv.2_Missense_Mutation_p.P249L|IKZF3_uc010cwe.2_Missense_Mutation_p.P188L|IKZF3_uc010cwf.2_Missense_Mutation_p.P140L|IKZF3_uc010cwg.2_Missense_Mutation_p.P101L|IKZF3_uc002hsw.2_Missense_Mutation_p.P283L|IKZF3_uc002hsx.2_Missense_Mutation_p.P266L|IKZF3_uc002hsy.2_Missense_Mutation_p.P283L|IKZF3_uc002hsz.2_Missense_Mutation_p.P227L|IKZF3_uc002hta.2_Missense_Mutation_p.P244L|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.P235L|IKZF3_uc002htc.2_Missense_Mutation_p.P75L|IKZF3_uc010wel.1_Missense_Mutation_p.P75L	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	322					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CTGGACCAAGGGGCGCAGGGC	0.557													5	57					0	0	1	0	0
GSDMA	284110	broad.mit.edu	37	17	38128426	38128426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:38128426G>A	uc002htl.1	+	6	818	c.700G>A	c.(700-702)GGA>AGA	p.G234R	GSDMA_uc002htm.1_Missense_Mutation_p.G234R	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	234					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						CTTCCCTCCTGGAGGTAAGTG	0.502													3	39					0	0	1	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38349236	38349236	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:38349236G>A	uc010cwu.1	+	13	1675	c.1185G>A	c.(1183-1185)GAG>GAA	p.E395E	RAPGEFL1_uc010wfd.1_Silent_p.E331E	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	601	Ras-GEF.				G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity	p.E395E(1)		ovary(1)|central_nervous_system(1)|skin(1)	3						TGAACATCGAGAAGCTGGTGA	0.517													16	165					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38644975	38644975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:38644975G>A	uc010cxb.2	-	3	850	c.686C>T	c.(685-687)CCC>CTC	p.P229L		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	229	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			TGAGATGCTGGGGGAATTTGG	0.652													4	23					0	0	1	0	0
KRT27	342574	broad.mit.edu	37	17	38933310	38933310	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:38933310T>A	uc002hvg.2	-	8	1362	c.1321A>T	c.(1321-1323)ACT>TCT	p.T441S		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	441	Tail.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				TCTTCCACAGTGTGAACTCTG	0.413													7	68					0	0	1	0	0
KRT27	342574	broad.mit.edu	37	17	38936698	38936698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:38936698C>T	uc002hvg.2	-	3	579	c.538G>A	c.(538-540)GAG>AAG	p.E180K		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	180	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				AGCGCTAGCTCGTTTTCAAAC	0.453													3	34					0	0	1	0	0
KRT12	3859	broad.mit.edu	37	17	39018824	39018824	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39018824G>A	uc002hvk.2	-	7	1404	c.1380C>T	c.(1378-1380)TCC>TCT	p.S460S		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	460	Tail.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TACCTTTAGAGGAATCAGTTG	0.358													14	159					0	0	1	0	0
KRT23	25984	broad.mit.edu	37	17	39084769	39084769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39084769C>T	uc002hvm.1	-	5	1316	c.727G>A	c.(727-729)GAT>AAT	p.D243N	KRT23_uc010wfl.1_Missense_Mutation_p.D106N|KRT23_uc010cxf.1_Missense_Mutation_p.D30N|KRT23_uc010cxg.2_Missense_Mutation_p.D243N|KRT23_uc002hvn.1_Missense_Mutation_p.D243N	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	243	Rod.|Coil 2.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				TGTCTCATATCCTCCAGGACC	0.388													15	158					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39122943	39122943	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39122943C>G	uc002hvo.1	-	1	202	c.166G>C	c.(166-168)GAC>CAC	p.D56H	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	56	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				CAGCCCTGGTCCCAGGGAATT	0.507													21	145					0	0	1	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316469	39316469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39316469G>A	uc002hwc.2	-	1	515	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	159						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			TGGCCACAATGGGGCCTGTAG	0.617													12	117					0	0	1	0	0
KRTAP17-1	83902	broad.mit.edu	37	17	39471596	39471596	+	Missense_Mutation	SNP	C	T	T	rs76002044		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39471596C>T	uc002hwj.2	-	1	352	c.307G>A	c.(307-309)GAC>AAC	p.D103N		NM_031964	NP_114170	Q9BYP8	KR171_HUMAN	keratin associated protein 17-1	103						intermediate filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CATTTTGTGTCGCATATAGGT	0.443													5	47					0	0	1	0	0
KRT34	3885	broad.mit.edu	37	17	39537338	39537338	+	Silent	SNP	C	T	T	rs145004450		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39537338C>T	uc002hwm.2	-	3	696	c.684G>A	c.(682-684)GAG>GAA	p.E228E		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	228	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				AGCAGATCAGCTCCTCCCTCA	0.512													10	199					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39553645	39553645	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39553645C>T	uc002hwn.2	-	1	200	c.147G>A	c.(145-147)GAG>GAA	p.E49E	KRT31_uc010cxn.2_Silent_p.E49E	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	49	Head.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				TGAAGGAGCCCTCGCAGAACC	0.647													7	171					0	0	1	0	0
KRT35	3886	broad.mit.edu	37	17	39637282	39637282	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39637282C>A	uc002hws.2	-	1	111	c.68G>T	c.(67-69)GGG>GTG	p.G23V		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	23	Head.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				AGTGGAGCCCCCACTGGCCCC	0.577													10	110					2.32078e-09	2.34632e-09	1	1	0
KRT36	8689	broad.mit.edu	37	17	39643906	39643906	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39643906G>A	uc002hwt.2	-	4	783	c.783C>T	c.(781-783)ATC>ATT	p.I261I		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	261	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				TATCCTCCAGGATCTTGTTGA	0.582													14	166					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39672454	39672454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39672454C>T	uc002hwy.2	-	4	993	c.802G>A	c.(802-804)GGT>AGT	p.G268S	KRT15_uc002hwz.2_Missense_Mutation_p.G170S|KRT15_uc002hxa.2_Missense_Mutation_p.G103S|KRT15_uc002hxb.1_Missense_Mutation_p.G103S	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	268	Rod.|Linker 12.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				AGGTCCACACCCGGTGCTGCG	0.622													40	502					0	0	1	0	0
KRT9	3857	broad.mit.edu	37	17	39727707	39727707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39727707C>T	uc002hxe.3	-	1	604	c.538G>A	c.(538-540)GAC>AAC	p.D180N	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	180	Rod.|Coil 1A.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TTCTCCAGGTCGTTGTTGGCC	0.458													10	107					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39913700	39913700	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39913700G>A	uc002hxq.2	-	12	2290	c.2013C>T	c.(2011-2013)TCC>TCT	p.S671S	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.S671S|JUP_uc002hxs.2_Silent_p.S671S	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	671					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GCTTGAAGAGGGAGTTGGTGA	0.493													8	151					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39914696	39914696	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39914696G>A	uc002hxq.2	-	10	2005	c.1728C>T	c.(1726-1728)AAC>AAT	p.N576N	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.N576N|JUP_uc002hxs.2_Silent_p.N576N	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	576	ARM 9.				adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		TCTCCATGCGGTTCATGGGGT	0.617													15	121					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39923647	39923647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39923647C>T	uc002hxq.2	-	5	1170	c.893G>A	c.(892-894)GGC>GAC	p.G298D	JUP_uc010wfs.1_Missense_Mutation_p.G298D|JUP_uc002hxr.2_Missense_Mutation_p.G298D|JUP_uc002hxs.2_Missense_Mutation_p.G298D	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	298					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CTCCTGGTTGCCGTAGGCCAG	0.647													5	74					0	0	1	0	0
NT5C3L	115024	broad.mit.edu	37	17	39985089	39985089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:39985089G>A	uc002hyc.3	-	7	631	c.622C>T	c.(622-624)CAC>TAC	p.H208Y	NT5C3L_uc002hxx.3_Missense_Mutation_p.H73Y|NT5C3L_uc010wfu.1_Missense_Mutation_p.H73Y|NT5C3L_uc002hyb.3_Missense_Mutation_p.H131Y|NT5C3L_uc002hyd.3_Missense_Mutation_p.H131Y|NT5C3L_uc002hxy.3_Missense_Mutation_p.H166Y|NT5C3L_uc002hxz.3_Missense_Mutation_p.H131Y|NT5C3L_uc002hya.3_Intron	NM_052935	NP_443167	C9JKC4	C9JKC4_HUMAN	5'-nucleotidase, cytosolic III-like	174						cytoplasm	5'-nucleotidase activity|magnesium ion binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.15)		ATGTTGGGGTGGAACACTTTC	0.463													8	192					0	0	1	0	0
TTC25	83538	broad.mit.edu	37	17	40094894	40094894	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40094894A>G	uc002hyj.3	+	6	799	c.710A>G	c.(709-711)AAC>AGC	p.N237S	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Intron	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	237						cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				ACTCACAGCAACTTCTGGAGG	0.587													10	185					0	0	1	0	0
TTC25	83538	broad.mit.edu	37	17	40107251	40107251	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40107251C>T	uc002hyj.3	+	9	1448	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	TTC25_uc010cxt.2_Intron	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	453	TPR 8.					cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				TGAGAGACTTCGAGTCAGCCG	0.542													4	25					0	0	1	0	0
DNAJC7	7266	broad.mit.edu	37	17	40133998	40133998	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40133998A>G	uc002hyo.2	-	12	1496	c.1259T>C	c.(1258-1260)GTT>GCT	p.V420A	DNAJC7_uc010cxu.2_Missense_Mutation_p.V367A|DNAJC7_uc010cxv.2_Intron|DNAJC7_uc010wgb.1_Missense_Mutation_p.V364A|DNAJC7_uc010wgc.1_Missense_Mutation_p.V278A|DNAJC7_uc002hyp.2_Missense_Mutation_p.V364A	NM_003315	NP_003306	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	420	J.				chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			ovary(1)	1		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				CTCCTTCTGAACCTCAGCACT	0.428													8	63					0	0	1	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40652922	40652922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40652922C>T	uc002hzr.2	+	16	2044	c.1877C>T	c.(1876-1878)TCA>TTA	p.S626L	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.S626L|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.S633L|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.S583L|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.S583L|ATP6V0A1_uc010cyg.2_Missense_Mutation_p.S272L|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.S485L	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	626	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		TCTGGTTATTCAATGTTGTAT	0.433													14	148					0	0	1	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40673057	40673057	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40673057G>C	uc002hzr.2	+	22	2600	c.2433G>C	c.(2431-2433)CAG>CAC	p.Q811H	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.Q805H|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.Q812H|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.Q768H|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.Q762H|ATP6V0A1_uc010cyg.2_Missense_Mutation_p.Q457H|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.Q670H|ATP6V0A1_uc002hzt.2_Missense_Mutation_p.Q95H|ATP6V0A1_uc002hzu.2_Missense_Mutation_p.R96T	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	811	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		TTGAGTTCCAGAATAAATTCT	0.468													24	294					0	0	1	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40844653	40844653	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:40844653C>T	uc002iay.2	+	17	2883	c.2667C>T	c.(2665-2667)CTC>CTT	p.L889L	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	889	Laminin G-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		AGGCCCGGCTCCGAGTGGATC	0.567													10	111					0	0	1	0	0
AOC2	314	broad.mit.edu	37	17	41002212	41002212	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:41002212C>T	uc002ibu.2	+	4	2153	c.2118C>T	c.(2116-2118)TTC>TTT	p.F706F	AOC2_uc002ibt.2_Silent_p.F679F|AOC3_uc002ibv.2_5'Flank	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	706					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CCTATAACTTCTTTGATGAGG	0.572													28	266					0	0	1	0	0
AOC3	8639	broad.mit.edu	37	17	41006556	41006556	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:41006556G>A	uc002ibv.2	+	2	1852	c.1692G>A	c.(1690-1692)GTG>GTA	p.V564V		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	564	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	GGCTGCAGGTGACCCGGAAGC	0.642													6	62					0	0	1	0	0
BRCA1	672	broad.mit.edu	37	17	41223222	41223222	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:41223222A>G	uc002icq.2	-	15	4941	c.4709T>C	c.(4708-4710)CTC>CCC	p.L1570P	BRCA1_uc010whp.1_Missense_Mutation_p.L419P|BRCA1_uc010whl.1_Missense_Mutation_p.L466P|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.L1499P|BRCA1_uc002icu.2_Missense_Mutation_p.L466P|BRCA1_uc010cyx.2_Missense_Mutation_p.L1523P|BRCA1_uc002ict.2_Missense_Mutation_p.L1591P|BRCA1_uc010whn.1_Missense_Mutation_p.L61P|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Missense_Mutation_p.L299P|BRCA1_uc002idc.1_Missense_Mutation_p.L466P|BRCA1_uc010whr.1_Missense_Mutation_p.L420P	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1570					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		ATCAGAGAAGAGGCTGATTCC	0.453			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			5	131					0	0	1	0	0
CD300LG	146894	broad.mit.edu	37	17	41931180	41931180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:41931180C>T	uc002iem.2	+	4	528	c.487C>T	c.(487-489)CCT>TCT	p.P163S	CD300LG_uc002iel.1_Intron|CD300LG_uc010czk.2_Missense_Mutation_p.P163S|CD300LG_uc010wil.1_Missense_Mutation_p.P129S|CD300LG_uc010czl.2_Intron	NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	163	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TGTAGCTTCTCCTGGGCTCTA	0.607													5	43					0	0	1	0	0
GRN	2896	broad.mit.edu	37	17	42429828	42429828	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:42429828C>T	uc002igp.1	+	12	1752	c.1533C>T	c.(1531-1533)AGC>AGT	p.S511S	GRN_uc002igr.1_Silent_p.S305S	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	511					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TGGCCCGTAGCCCTCACGTGG	0.632													10	121					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476012	42476012	+	Missense_Mutation	SNP	G	A	A	rs145593760	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:42476012G>A	uc002igw.1	-	8	3497	c.3433C>T	c.(3433-3435)CTT>TTT	p.L1145F	GPATCH8_uc002igv.1_Missense_Mutation_p.L1067F|GPATCH8_uc010wiz.1_Missense_Mutation_p.L1067F	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1145						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ATCAGTGGAAGGACAGGCTTA	0.552													22	281					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476578	42476578	+	Missense_Mutation	SNP	G	A	A	rs142791383		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:42476578G>A	uc002igw.1	-	8	2931	c.2867C>T	c.(2866-2868)TCC>TTC	p.S956F	GPATCH8_uc002igv.1_Missense_Mutation_p.S878F|GPATCH8_uc010wiz.1_Missense_Mutation_p.S878F	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	956	Ser-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GCGGCCCCGGGATCTTGAGCG	0.567													11	95					0	0	1	0	0
GJC1	10052	broad.mit.edu	37	17	42882774	42882774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:42882774G>A	uc002ihj.2	-	2	923	c.412C>T	c.(412-414)CCT>TCT	p.P138S	GJC1_uc002ihk.2_Missense_Mutation_p.P138S|GJC1_uc002ihl.2_Missense_Mutation_p.P138S|GJC1_uc010czx.2_Missense_Mutation_p.P138S|GJC1_uc010czy.1_5'UTR	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	138	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				TACATCATAGGATCCTCTTCG	0.507													13	126					0	0	1	0	0
NMT1	4836	broad.mit.edu	37	17	43181233	43181233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:43181233C>T	uc002ihz.2	+	10	1339	c.1321C>T	c.(1321-1323)CTC>TTC	p.L441F	NMT1_uc002iia.2_RNA|NMT1_uc010dad.1_Missense_Mutation_p.L101F	NM_021079	NP_066565	P30419	NMT1_HUMAN	N-myristoyltransferase 1	441					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|N-terminal protein myristoylation|protein lipoylation	actin cytoskeleton|cell junction|cytosol	glycylpeptide N-tetradecanoyltransferase activity				0		Prostate(33;0.155)				CGCCCTTGTCCTCGCCAAAAT	0.572													17	199					0	0	1	0	0
CRHR1	1394	broad.mit.edu	37	17	43898795	43898795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:43898795C>T	uc010dap.2	+	4	581	c.316C>T	c.(316-318)CTC>TTC	p.L106F	CRHR1_uc010wjx.1_5'UTR|CRHR1_uc002ijp.2_Intron|CRHR1_uc002ijm.2_Missense_Mutation_p.L106F|CRHR1_uc002ijn.2_Missense_Mutation_p.L66F|CRHR1_uc010dar.2_Missense_Mutation_p.L106F|CRHR1_uc010dao.2_Intron|CRHR1_uc010daq.2_5'UTR|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_Intron	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	106	Extracellular (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CCAGGAGATCCTCAATGAGGA	0.597													11	99					0	0	1	0	0
CRHR1	1394	broad.mit.edu	37	17	43911182	43911182	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:43911182C>T	uc010dap.2	+	12	1384	c.1119C>T	c.(1117-1119)TTC>TTT	p.F373F	CRHR1_uc010wjx.1_Silent_p.F169F|CRHR1_uc002ijp.2_Intron|CRHR1_uc002ijm.2_Silent_p.F344F|CRHR1_uc002ijn.2_Silent_p.F304F|CRHR1_uc010dar.2_Silent_p.F344F|CRHR1_uc010dao.2_Silent_p.F243F|CRHR1_uc010daq.2_Silent_p.F169F	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	373	Extracellular (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		GGGTCGTCTTCATCTACTTCA	0.587													14	146					0	0	1	0	0
IMP5	162540	broad.mit.edu	37	17	43922587	43922587	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:43922587G>A	uc010wka.1	+	1	315	c.315G>A	c.(313-315)ACG>ACA	p.T105T	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	105	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCTTCCACACGAAAGGCTGGC	0.667													7	88					0	0	1	0	0
OSBPL7	114881	broad.mit.edu	37	17	45888202	45888202	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:45888202C>T	uc002ilx.1	-	17	1941	c.1738_splice	c.e17-1	p.V580_splice	OSBPL7_uc002ilw.1_Splice_Site_p.V142_splice	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7						lipid transport		lipid binding				0						GGTGGGAGACCTTGGTGAGCA	0.587													3	34					0	0	1	0	0
NFE2L1	4779	broad.mit.edu	37	17	46136124	46136124	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:46136124C>T	uc002imz.3	+	6	2091	c.1440C>T	c.(1438-1440)TCC>TCT	p.S480S	NFE2L1_uc002ina.3_Silent_p.S450S|NFE2L1_uc002inb.3_Silent_p.S450S|NFE2L1_uc010wle.1_Silent_p.S292S|NFE2L1_uc010wlf.1_Silent_p.S324S	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	480					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						CAGGCCTTTCCTTAGACTCGA	0.393													10	128					0	0	1	0	0
SNX11	29916	broad.mit.edu	37	17	46196496	46196496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:46196496C>T	uc002inf.1	+	7	841	c.487C>T	c.(487-489)CAG>TAG	p.Q163*	SNX11_uc010wlg.1_Nonsense_Mutation_p.Q155*|SNX11_uc010wlh.1_Nonsense_Mutation_p.Q155*|SNX11_uc010wli.1_Nonsense_Mutation_p.Q102*|SNX11_uc010wlj.1_Nonsense_Mutation_p.Q19*|SNX11_uc002ing.1_Nonsense_Mutation_p.Q163*|SNX11_uc002inh.1_Nonsense_Mutation_p.Q163*	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	163					cell communication|protein transport	membrane	phosphatidylinositol binding				0						TGGCTGGGCCCAGGAAGAGAG	0.522													8	109					0	0	1	0	0
HOXB1	3211	broad.mit.edu	37	17	46607085	46607085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:46607085C>T	uc002ink.1	-	2	736	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	244	Homeobox.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACCTGTGTTTCATTGAGCTCC	0.582													27	300					0	0	1	0	0
GNGT2	2793	broad.mit.edu	37	17	47284190	47284190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:47284190C>T	uc002ioo.1	-	4	446	c.139G>A	c.(139-141)GAT>AAT	p.D47N		NM_031498	NP_113686	O14610	GBGT2_HUMAN	guanine nucleotide binding protein-gamma	47					G-protein coupled receptor protein signaling pathway|phototransduction|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			AGAAAAGGATCGTTTCCTGCT	0.488													13	96					0	0	1	0	0
GNGT2	2793	broad.mit.edu	37	17	47284743	47284743	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:47284743C>T	uc002ioo.1	-	3	349	c.42G>A	c.(40-42)GAG>GAA	p.E14E	ABI3_uc002ioq.1_5'Flank|ABI3_uc002iop.1_5'Flank	NM_031498	NP_113686	O14610	GBGT2_HUMAN	guanine nucleotide binding protein-gamma	14					G-protein coupled receptor protein signaling pathway|phototransduction|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			GCTGCTCCACCTCCATCTTCA	0.537													21	260					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48266134	48266134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48266134G>A	uc002iqm.2	-	42	3194	c.3068C>T	c.(3067-3069)TCC>TTC	p.S1023F		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1023	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	TCGTCCAGGGGAACCTTCGGC	0.617			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						9	106					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48680486	48680486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48680486G>A	uc002irk.1	+	21	4467	c.4095G>A	c.(4093-4095)ATG>ATA	p.M1365I	CACNA1G_uc002iri.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irj.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irl.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irm.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irn.1_Missense_Mutation_p.M1342I|CACNA1G_uc002iro.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irp.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irq.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irr.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irs.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irt.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irv.1_Missense_Mutation_p.M1365I|CACNA1G_uc002irw.1_Missense_Mutation_p.M1342I|CACNA1G_uc002iru.1_Missense_Mutation_p.M1342I|CACNA1G_uc002irx.1_Missense_Mutation_p.M1278I|CACNA1G_uc002iry.1_Missense_Mutation_p.M1278I|CACNA1G_uc002irz.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isa.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isb.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isc.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isd.1_Missense_Mutation_p.M1278I|CACNA1G_uc002ise.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isf.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isg.1_Missense_Mutation_p.M1278I|CACNA1G_uc002ish.1_Missense_Mutation_p.M1278I|CACNA1G_uc002isi.1_Missense_Mutation_p.M1255I|CACNA1G_uc002isj.2_Missense_Mutation_p.M89I	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1365	Extracellular (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TGGTGTCCATGGTCTCTGACA	0.642													7	79					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48694934	48694934	+	Splice_Site	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48694934T>C	uc002irk.1	+	29	5527	c.5155_splice	c.e29+2	p.V1719_splice	CACNA1G_uc002irj.1_Splice_Site_p.V1685_splice|CACNA1G_uc002irl.1_Splice_Site_p.V1696_splice|CACNA1G_uc002irm.1_Splice_Site_p.V1685_splice|CACNA1G_uc002irn.1_Splice_Site_p.V1678_splice|CACNA1G_uc002iro.1_Splice_Site_p.V1685_splice|CACNA1G_uc002irp.1_Splice_Site_p.V1719_splice|CACNA1G_uc002irq.1_Splice_Site_p.V1696_splice|CACNA1G_uc002irr.1_Splice_Site_p.V1719_splice|CACNA1G_uc002irs.1_Splice_Site_p.V1708_splice|CACNA1G_uc002irt.1_Splice_Site_p.V1701_splice|CACNA1G_uc002irv.1_Splice_Site_p.V1708_splice|CACNA1G_uc002irw.1_Splice_Site_p.V1696_splice|CACNA1G_uc002iru.1_Splice_Site_p.V1685_splice|CACNA1G_uc002irx.1_Splice_Site_p.V1632_splice|CACNA1G_uc002iry.1_Splice_Site_p.V1621_splice|CACNA1G_uc002irz.1_Splice_Site_p.V1632_splice|CACNA1G_uc002isa.1_Splice_Site_p.V1598_splice|CACNA1G_uc002isb.1_Splice_Site_p.V1639_splice|CACNA1G_uc002isc.1_Splice_Site_p.V1621_splice|CACNA1G_uc002isd.1_Splice_Site_p.V1614_splice|CACNA1G_uc002ise.1_Splice_Site_p.V1587_splice|CACNA1G_uc002isf.1_Splice_Site_p.V1614_splice|CACNA1G_uc002isg.1_Splice_Site_p.V1580_splice|CACNA1G_uc002ish.1_Splice_Site_p.V1587_splice|CACNA1G_uc002isi.1_Splice_Site_p.V1575_splice	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G						axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TTGCCCGAGGTTGGTGCCCAG	0.642													7	59					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48701833	48701833	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48701833C>T	uc002irk.1	+	37	6714	c.6342C>T	c.(6340-6342)ATC>ATT	p.I2114I	CACNA1G_uc002irj.1_Silent_p.I1987I|CACNA1G_uc002irl.1_Silent_p.I1998I|CACNA1G_uc002irm.1_Silent_p.I2035I|CACNA1G_uc002irn.1_Silent_p.I1980I|CACNA1G_uc002iro.1_Silent_p.I1987I|CACNA1G_uc002irp.1_Silent_p.I2069I|CACNA1G_uc002irq.1_Silent_p.I2091I|CACNA1G_uc002irr.1_Silent_p.I2021I|CACNA1G_uc002irs.1_Silent_p.I2058I|CACNA1G_uc002irt.1_Silent_p.I2003I|CACNA1G_uc002irv.1_Silent_p.I2010I|CACNA1G_uc002irw.1_Silent_p.I2043I|CACNA1G_uc002iru.1_Silent_p.I2080I|CACNA1G_uc002irx.1_Silent_p.I1934I|CACNA1G_uc002iry.1_Silent_p.I1923I|CACNA1G_uc002irz.1_Silent_p.I1927I|CACNA1G_uc002isa.1_Silent_p.I1900I|CACNA1G_uc002isb.1_Silent_p.I1941I|CACNA1G_uc002isc.1_Silent_p.I2016I|CACNA1G_uc002isd.1_Silent_p.I1909I|CACNA1G_uc002ise.1_Silent_p.I1937I|CACNA1G_uc002isf.1_Silent_p.I1964I|CACNA1G_uc002isg.1_Silent_p.I1882I|CACNA1G_uc002ish.1_Silent_p.I1889I|CACNA1G_uc002isi.1_Silent_p.I1877I	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2114	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGGGCACCATCCCCAAACTGC	0.642													5	17					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48733226	48733226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48733226G>A	uc002isl.2	+	2	159	c.79G>A	c.(79-81)GAC>AAC	p.D27N	ABCC3_uc002isk.3_Missense_Mutation_p.D27N	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	27	Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	AGAAAACCCGGACCTCACTCC	0.592													9	86					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48750426	48750426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48750426C>T	uc002isl.2	+	18	2416	c.2336C>T	c.(2335-2337)TCC>TTC	p.S779F		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	779	ABC transporter 1.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GACCCACTGTCCGCGGTGGAC	0.607													16	116					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48764954	48764954	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:48764954C>T	uc002isl.2	+	30	4418	c.4338C>T	c.(4336-4338)ATC>ATT	p.I1446I	ABCC3_uc002isn.2_Silent_p.I200I	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1446	Cytoplasmic (By similarity).|ABC transporter 2.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	AGAGCCGCATCCTGGTTTTAG	0.627													15	84					0	0	1	0	0
UTP18	51096	broad.mit.edu	37	17	49353297	49353297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:49353297C>T	uc002its.2	+	6	831	c.782C>T	c.(781-783)CCC>CTC	p.P261L		NM_016001	NP_057085	Q9Y5J1	UTP18_HUMAN	UTP18, small subunit processome component	261	WD 1.				rRNA processing	nucleolus					0			BRCA - Breast invasive adenocarcinoma(22;2.09e-07)			CAGTTCCATCCCGGTGCACAG	0.383													5	55					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900709	51900709	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:51900709C>T	uc002iua.2	+	1	471	c.315C>T	c.(313-315)GCC>GCT	p.A105A	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	105					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCTCTTCGGCCATCAGGGACC	0.612													19	234					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901439	51901439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:51901439G>A	uc002iua.2	+	1	1201	c.1045G>A	c.(1045-1047)GAC>AAC	p.D349N	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	349	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TGAGAAGCTGGACCTCAAAGT	0.448													8	110					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901477	51901477	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:51901477G>A	uc002iua.2	+	1	1239	c.1083G>A	c.(1081-1083)GGG>GGA	p.G361G	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	361	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGATTTATGGGGGCAAGGTGT	0.463													8	89					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54403597	54403597	+	Silent	SNP	C	T	T	rs146308617		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:54403597C>T	uc002iun.1	+	3	113	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	26										large_intestine(1)|ovary(1)	2						GAAGGAGATTCGCTTGCTTTG	0.413													4	68					0	0	1	0	0
AKAP1	8165	broad.mit.edu	37	17	55182888	55182888	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:55182888C>T	uc002iux.2	+	2	294	c.63C>T	c.(61-63)GGC>GGT	p.G21G	AKAP1_uc010wnl.1_Silent_p.G21G|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Silent_p.G21G	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	21					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CGCTCCTCGGCTGGTGGTGGT	0.577													4	48					0	0	1	0	0
MTMR4	9110	broad.mit.edu	37	17	56572419	56572419	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:56572419G>A	uc002iwj.2	-	16	3194	c.3084C>T	c.(3082-3084)ATC>ATT	p.I1028I		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	1028	Potential.					cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACCCTGCTTCGATTTGCCGTA	0.557													13	143					0	0	1	0	0
TRIM37	4591	broad.mit.edu	37	17	57094720	57094720	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:57094720G>A	uc002iwy.3	-	20	2767	c.2323C>T	c.(2323-2325)CGA>TGA	p.R775*	TRIM37_uc002iwz.3_Nonsense_Mutation_p.R775*|TRIM37_uc002ixa.3_Nonsense_Mutation_p.R653*|TRIM37_uc010woc.1_Nonsense_Mutation_p.R741*	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	775						perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					ACTGCTCTTCGAAGTGATAGA	0.448									Mulibrey_Nanism				11	122					0	0	1	0	0
TRIM37	4591	broad.mit.edu	37	17	57168659	57168660	+	Splice_Site	DNP	AC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:57168659_57168660AC>TT	uc002iwy.3	-	3	608	c.164_splice	c.e3+1	p.R55_splice	TRIM37_uc002iwz.3_Splice_Site_p.R55_splice|TRIM37_uc002ixa.3_Splice_Site|TRIM37_uc010woc.1_Splice_Site_p.R21_splice	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein							perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					GGAAACACTTACCGGCAATGAG	0.381									Mulibrey_Nanism				7	72					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58511257	58511257	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:58511257G>A	uc002iyr.1	-	1		c.2101C>T								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		CAAGGTTGACGATCTCATCAA	0.473													3	57					0	0	1	0	0
BCAS3	54828	broad.mit.edu	37	17	58980029	58980029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:58980029C>T	uc002iyv.3	+	11	896	c.787C>T	c.(787-789)CAG>TAG	p.Q263*	BCAS3_uc010wow.1_Nonsense_Mutation_p.Q50*|BCAS3_uc002iyu.3_Nonsense_Mutation_p.Q263*|BCAS3_uc002iyw.3_Nonsense_Mutation_p.Q259*|BCAS3_uc002iyx.1_Nonsense_Mutation_p.Q78*|BCAS3_uc002iyy.3_Nonsense_Mutation_p.Q34*	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	263						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			AGACAACATTCAGTCTTATAC	0.418													17	126					0	0	1	0	0
INTS2	57508	broad.mit.edu	37	17	59968924	59968924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:59968924G>A	uc002izn.2	-	14	1925	c.1849C>T	c.(1849-1851)CAG>TAG	p.Q617*	INTS2_uc002izm.2_Nonsense_Mutation_p.Q609*	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	617					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						GTGACTGGCTGATTTGTGGCT	0.348													12	165					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60345090	60345090	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:60345090G>A	uc010woz.1	-	11		c.853C>T			uc010wpb.1_5'Flank	NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						GCAGCCTAAGGACGAACACTG	0.577													11	166					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60744152	60744152	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:60744152C>T	uc002jad.2	+	5	1296	c.894C>T	c.(892-894)ATC>ATT	p.I298I	MRC2_uc002jac.2_Silent_p.I298I	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	298	Extracellular (Potential).|C-type lectin 1.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CCCTGTGGATCGGCTTGAATG	0.642													9	50					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61611571	61611571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:61611571C>T	uc002jay.2	+	5	1080	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	KCNH6_uc002jax.1_Missense_Mutation_p.P334S|KCNH6_uc010wpl.1_Missense_Mutation_p.P211S|KCNH6_uc010wpm.1_Missense_Mutation_p.P334S|KCNH6_uc002jaz.1_Missense_Mutation_p.P334S	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	334	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GGTCAGCCACCCCCGCCGCAT	0.567													5	127					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61623070	61623070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:61623070C>T	uc002jay.2	+	14	2872	c.2792C>T	c.(2791-2793)CCA>CTA	p.P931L	KCNH6_uc010wpl.1_Missense_Mutation_p.P772L|KCNH6_uc010wpm.1_Missense_Mutation_p.P895L|KCNH6_uc002jaz.1_Missense_Mutation_p.P842L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	931	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ACTCTGGCACCATCCTCAGAA	0.572													15	135					0	0	1	0	0
TACO1	51204	broad.mit.edu	37	17	61685284	61685285	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:61685284_61685285CC>TT	uc002jbd.2	+	5	1016_1017	c.816_817CC>TT	c.(814-819)GACCTG>GATTTG	p.272_273DL>DL		NM_016360	NP_057444	Q9BSH4	TACO1_HUMAN	translational activator of mitochondrially	272_273					regulation of translation	mitochondrion					0						CTGAGCCCGACCTGGAACAGGC	0.545													7	99					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62043468	62043468	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:62043468G>A	uc002jds.1	-	8	1313	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	412	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GTACCAGCTGGAAGAGGTTCT	0.612													4	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	62399248	62399248	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:62399248C>T	uc002jef.1	-	1	192	c.183G>A	c.(181-183)AGG>AGA	p.R61R						Homo sapiens cDNA FLJ34100 fis, clone FCBBF3007597.																		TAAGGAACTCCCTGGACACAG	0.537													6	50					0	0	1	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62856628	62856628	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:62856628C>T	uc002jey.2	-	11	4167	c.3636G>A	c.(3634-3636)AGG>AGA	p.R1212R	LRRC37A3_uc010wqg.1_Silent_p.R330R|LRRC37A3_uc002jex.1_Silent_p.R189R|LRRC37A3_uc010wqf.1_Silent_p.R250R|LRRC37A3_uc010dek.1_Silent_p.R218R	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1212	Extracellular (Potential).					integral to membrane					0						GTTTCAGCTCCCTTGGGGCTG	0.562													15	91					0	0	1	0	0
RGS9	8787	broad.mit.edu	37	17	63206669	63206669	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:63206669G>A	uc002jfe.2	+	17	1463	c.1353G>A	c.(1351-1353)CAG>CAA	p.Q451Q	RGS9_uc010dem.2_Silent_p.Q448Q|RGS9_uc002jfd.2_Silent_p.Q448Q|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Silent_p.Q222Q	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	451					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						TCCTGAGACAGCTGGAAGAGG	0.577													10	99					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65822412	65822412	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:65822412A>T	uc002jgf.2	+	1	633	c.572A>T	c.(571-573)GAA>GTA	p.E191V	BPTF_uc002jge.2_Missense_Mutation_p.E191V|BPTF_uc010wqm.1_Missense_Mutation_p.E191V	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	191					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TACTGCACGGAAAGCAGCTTC	0.587													5	97					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66883216	66883216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:66883216G>A	uc002jhp.2	-	24	3430	c.3251C>T	c.(3250-3252)TCC>TTC	p.S1084F	ABCA8_uc002jhq.2_Missense_Mutation_p.S1124F|ABCA8_uc010wqq.1_Missense_Mutation_p.S1124F|ABCA8_uc010wqr.1_Missense_Mutation_p.S1063F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1084	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AAAGATGAAGGAAATCACGTA	0.333													5	75					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67188749	67188749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:67188749G>A	uc010dfa.1	-	17	2705	c.1826C>T	c.(1825-1827)TCA>TTA	p.S609L	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Missense_Mutation_p.S210L	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	609	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					AAACAAAGATGATCCTGCACA	0.323													18	167					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67189323	67189323	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:67189323G>A	uc010dfa.1	-	16	2587	c.1708C>T	c.(1708-1710)CTG>TTG	p.L570L	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Silent_p.L171L	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	570	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TGCTCCTTCAGGAGGCTCCAC	0.458													4	82					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71166024	71166025	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:71166024_71166025GG>AA	uc002jje.2	+	2	926_927	c.566_567GG>AA	c.(565-567)GGG>GAA	p.G189E		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	189	Extracellular (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			AACCAGTGGGGGAGAAGCAGCT	0.564													4	62					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71433891	71433891	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:71433891G>A	uc010dfm.2	-	8	987	c.987C>T	c.(985-987)CCC>CCT	p.P329P	SDK2_uc010dfn.2_Silent_p.P8P	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	329	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						TGGCCTGACAGGGGATGTCCA	0.562													10	168					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72301464	72301464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:72301464G>A	uc002jkf.2	+	9	1193	c.1094G>A	c.(1093-1095)GGC>GAC	p.G365D	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA|uc002jkh.1_3'UTR|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	365	WD 4.				cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GGCCATCATGGCCCCATCTAC	0.582									Kartagener_syndrome				7	83					0	0	1	0	0
GPR142	350383	broad.mit.edu	37	17	72368006	72368006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:72368006G>A	uc010wqy.1	+	4	656	c.656G>A	c.(655-657)GGA>GAA	p.G219E	GPR142_uc010wqx.1_Missense_Mutation_p.G131E	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	219	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTCCTGCAGGGAGCAGTGCTG	0.632													6	48					0	0	1	0	0
C17orf77	146723	broad.mit.edu	37	17	72588716	72588716	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:72588716G>A	uc002jla.1	+	3	893	c.531G>A	c.(529-531)AAG>AAA	p.K177K	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	177						extracellular region					0						GGACGGACAAGGCCAGCCATG	0.617													4	23					0	0	1	0	0
RAB37	326624	broad.mit.edu	37	17	72739297	72739297	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:72739297C>T	uc002jlk.2	+	4	332	c.276C>T	c.(274-276)TTC>TTT	p.F92F	RAB37_uc002jlc.2_Silent_p.F85F|RAB37_uc010dfu.2_Silent_p.F85F|RAB37_uc002jld.2_Silent_p.F85F|RAB37_uc010wrb.1_Silent_p.F60F|RAB37_uc010wrc.1_Silent_p.F97F|RAB37_uc010wrd.1_Silent_p.F60F|RAB37_uc010wre.1_Silent_p.F55F|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	92					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						AGGAACGGTTCCGAAGCGTCA	0.602													19	216					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72926996	72926996	+	Silent	SNP	C	T	T	rs142921758		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:72926996C>T	uc010wrp.1	+	7	1355	c.1266C>T	c.(1264-1266)ATC>ATT	p.I422I		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	422						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					TGTTTATCATCGAGAGCCTTC	0.622													8	87					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73753508	73753508	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:73753508C>G	uc002jpg.2	+	40	5528	c.5341C>G	c.(5341-5343)CTG>GTG	p.L1781V	ITGB4_uc002jph.2_Missense_Mutation_p.L1711V|ITGB4_uc002jpi.3_Missense_Mutation_p.L1711V|ITGB4_uc002jpj.2_Missense_Mutation_p.L1764V|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1781	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGGGCTGACCCTGGGGGCCCA	0.652													3	18					0	0	1	0	0
ACOX1	51	broad.mit.edu	37	17	73951939	73951939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:73951939G>A	uc002jqf.2	-	5	918	c.628C>T	c.(628-630)CGT>TGT	p.R210C	ACOX1_uc010wsq.1_Missense_Mutation_p.R172C|ACOX1_uc002jqe.2_Missense_Mutation_p.R210C|ACOX1_uc010wsr.1_Missense_Mutation_p.R142C	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	210					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						CCGATTTCACGAATAGGTACG	0.403													25	250					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74005881	74005881	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:74005881G>A	uc002jqi.2	-	22	3633	c.3405C>T	c.(3403-3405)ATC>ATT	p.I1135I	EVPL_uc010wss.1_Silent_p.I1157I|EVPL_uc010wst.1_Silent_p.I605I	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1135	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCTCCTTCACGATGACCTTGG	0.642													6	44					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74006260	74006260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:74006260G>A	uc002jqi.2	-	22	3254	c.3026C>T	c.(3025-3027)ACC>ATC	p.T1009I	EVPL_uc010wss.1_Missense_Mutation_p.T1031I|EVPL_uc010wst.1_Missense_Mutation_p.T479I	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1009	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGGCTGCATGGTCTTCCTCTT	0.657													10	88					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74007750	74007750	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:74007750C>T	uc002jqi.2	-	21	2797	c.2569_splice	c.e21-1	p.E857_splice	EVPL_uc010wss.1_Splice_Site_p.E879_splice|EVPL_uc010wst.1_Splice_Site_p.E327_splice	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin						keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGTTCTTCTCCTGGAGAAGGC	0.567													4	32					0	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74623609	74623609	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:74623609G>A	uc002jsh.2	-	3	1062	c.888C>T	c.(886-888)CTC>CTT	p.L296L	ST6GALNAC1_uc002jsi.2_Silent_p.L164L|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	296	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGGGCAGAAAGAGTTTCTGGA	0.532													10	132					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76437259	76437259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:76437259C>T	uc010dhp.1	-	17	2773	c.2551G>A	c.(2551-2553)GGC>AGC	p.G851S	DNAH17_uc002jvq.2_Missense_Mutation_p.G136S|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AACTTGCTGCCCATCTTTTCC	0.617													4	49					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78337001	78337001	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:78337001C>T	uc002jyh.1	+	15	5897	c.5674C>T	c.(5674-5676)CAG>TAG	p.Q1892*	uc002jyi.1_Intron|RNF213_uc010dhw.1_Nonsense_Mutation_p.Q274*	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CCTTGCCTACCAGCGTTTCAG	0.557													9	122					0	0	1	0	0
RPTOR	57521	broad.mit.edu	37	17	78931467	78931467	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:78931467C>T	uc002jyt.1	+	29	4219	c.3414C>T	c.(3412-3414)CTC>CTT	p.L1138L	RPTOR_uc010wug.1_Silent_p.L980L|RPTOR_uc002jyu.1_Silent_p.L31L	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1138	WD 3.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CCGGCCTCCTCATGAGCTCAG	0.627													20	154					0	0	1	0	0
NPLOC4	55666	broad.mit.edu	37	17	79536121	79536121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:79536121G>A	uc002kat.3	-	14	1552	c.1370C>T	c.(1369-1371)CCC>CTC	p.P457L	NPLOC4_uc002kau.3_Missense_Mutation_p.P457L|NPLOC4_uc010wur.1_Missense_Mutation_p.P296L|NPLOC4_uc010dic.2_5'Flank|NPLOC4_uc002kas.2_5'UTR	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	457					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TGGATCCTTGGGGAAAGTTGT	0.433													6	50					0	0	1	0	0
ARL16	339231	broad.mit.edu	37	17	79650840	79650840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:79650840C>T	uc002kbf.2	-	1	115	c.16G>A	c.(16-18)GGG>AGG	p.G6R	ARL16_uc002kbe.2_5'Flank|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	6							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AAGGCCCGCCCACCGGCCACT	0.637													3	19					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80049263	80049263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:80049263G>A	uc002kdu.2	-	9	1444	c.1327C>T	c.(1327-1329)CGG>TGG	p.R443W	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	443	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TGGCTGTGCCGGAGGCCCTGC	0.716													9	15					0	0	1	0	0
CSNK1D	1453	broad.mit.edu	37	17	80213452	80213452	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:80213452C>T	uc002kej.2	-	3	505	c.189G>A	c.(187-189)GTG>GTA	p.V63V	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Silent_p.V63V|CSNK1D_uc002kei.2_Silent_p.V63V|CSNK1D_uc010wvj.1_5'UTR|CSNK1D_uc002keh.2_5'Flank|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	63	Protein kinase.				circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			TGGGGATGCCCACTAGGCAAG	0.572													17	229					0	0	1	0	0
FOXK2	3607	broad.mit.edu	37	17	80543889	80543889	+	Silent	SNP	C	T	T	rs148172805	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr17:80543889C>T	uc002kfn.2	+	7	1560	c.1389C>T	c.(1387-1389)TCC>TCT	p.S463S	FOXK2_uc002kfm.1_Silent_p.S463S|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	463					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			CCTCGACCTCCCAGCCACCCG	0.627													9	69					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891505	2891505	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:2891505G>A	uc002kln.2	+	4	1539	c.1380G>A	c.(1378-1380)ACG>ACA	p.T460T		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	460					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TCAATGTGACGGAGAAGAACG	0.448													23	150					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6961660	6961660	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:6961660C>T	uc002knm.2	-	53	7645	c.7551G>A	c.(7549-7551)ACG>ACA	p.T2517T	LAMA1_uc002knl.2_5'UTR|LAMA1_uc010wzj.1_Silent_p.T1993T	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2517	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CACTGCTGTTCGTGGTGGCAA	0.562													6	42					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231187	7231187	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:7231187G>A	uc010wzk.1	+	1	51	c.51G>A	c.(49-51)AGG>AGA	p.R17R		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	17										ovary(1)|liver(1)	2						GCCCCAAGAGGATGCTGTTCA	0.632													7	63					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231409	7231409	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:7231409G>A	uc010wzk.1	+	1	273	c.273G>A	c.(271-273)GGG>GGA	p.G91G		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	91	LRR 1.									ovary(1)|liver(1)	2						CCGAGGTGGGGAAACTGACCC	0.577													4	64					0	0	1	0	0
PPP4R1	9989	broad.mit.edu	37	18	9588787	9588787	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:9588787G>A	uc002koe.1	-	5	478	c.360C>T	c.(358-360)AAC>AAT	p.N120N	PPP4R1_uc010wzo.1_Silent_p.N77N|PPP4R1_uc002kod.1_Silent_p.N103N|PPP4R1_uc010wzp.1_RNA	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	120					protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						TTGAAGGCCGGTTTTCTTGAC	0.393													6	66					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887927	9887927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:9887927G>A	uc002koi.3	+	2	1900	c.1451G>A	c.(1450-1452)AGG>AAG	p.R484K	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.R417K	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	484	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GGGCCCTGCAGGACCATCAGA	0.582													7	63					0	0	1	0	0
SPIRE1	56907	broad.mit.edu	37	18	12546886	12546886	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:12546886T>C	uc002kre.2	-	3	437	c.390A>G	c.(388-390)GGA>GGG	p.G130G	SPIRE1_uc002krc.2_RNA|SPIRE1_uc010wzw.1_Silent_p.G10G|SPIRE1_uc010wzx.1_Intron|SPIRE1_uc010wzy.1_Silent_p.G130G	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	130	KIND.					cytoskeleton|perinuclear region of cytoplasm	actin binding				0						AAATAATAATTCCCAAAGATT	0.383													2	14					0	0	1	0	0
SEH1L	81929	broad.mit.edu	37	18	12963211	12963211	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:12963211T>C	uc002krr.2	+	4	500	c.362T>C	c.(361-363)TTT>TCT	p.F121S	SEH1L_uc002krq.2_Missense_Mutation_p.F121S	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	121	WD 3.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						GATGTGAAGTTTGCTCCCAAG	0.338													17	142					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21330948	21330948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:21330948G>A	uc002kuq.2	+	5	837	c.751G>A	c.(751-753)GAG>AAG	p.E251K	LAMA3_uc010dlv.1_Missense_Mutation_p.E251K|LAMA3_uc002kur.2_Missense_Mutation_p.E251K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	251	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CACCCTGAGGGAGTTTACCAA	0.458													8	108					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21330955	21330956	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:21330955_21330956CC>TT	uc002kuq.2	+	5	844_845	c.758_759CC>TT	c.(757-759)ACC>ATT	p.T253I	LAMA3_uc010dlv.1_Missense_Mutation_p.T253I|LAMA3_uc002kur.2_Missense_Mutation_p.T253I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	253	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGGAGTTTACCAAGGCAACAA	0.475													10	102					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21390383	21390383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:21390383G>A	uc002kuq.2	+	13	1743	c.1657G>A	c.(1657-1659)GGA>AGA	p.G553R	LAMA3_uc002kur.2_Missense_Mutation_p.G553R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	553	Domain V.|Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCAGTGACTGGACAGTGTGA	0.542													9	101					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21519301	21519301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:21519301C>T	uc002kuq.2	+	68	9063	c.8977C>T	c.(8977-8979)CCC>TCC	p.P2993S	LAMA3_uc002kur.2_Missense_Mutation_p.P2937S|LAMA3_uc002kus.3_Missense_Mutation_p.P1384S|LAMA3_uc002kut.3_Missense_Mutation_p.P1328S	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2993	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGGGACATTCCCACCAGCCA	0.557													20	280					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25572769	25572769	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:25572769G>A	uc002kwg.2	-	9	1653	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I	CDH2_uc010xbn.1_Silent_p.I367I	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	398	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TAGCTACTATGATGTCTACCC	0.488													7	85					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28576904	28576904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28576904C>T	uc002kwj.3	-	15	2501	c.2346G>A	c.(2344-2346)ATG>ATA	p.M782I	DSC3_uc002kwi.3_Missense_Mutation_p.M782I	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	782	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TTCCTCCTTTCATCATTTCAA	0.498													3	33					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28728487	28728487	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28728487A>T	uc002kwn.2	-	6	1008	c.746T>A	c.(745-747)TTT>TAT	p.F249Y	DSC1_uc002kwm.2_Missense_Mutation_p.F249Y	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	249	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AGGCACAGTAAAGATAGTCAC	0.353													18	160					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28913665	28913665	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28913665C>T	uc002kwp.2	+	7	1010	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	266	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ATGATAATATCCCTTACATGG	0.393													6	65					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28935272	28935272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28935272G>A	uc002kwp.2	+	15	3325	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	DSG1_uc010xbp.1_Missense_Mutation_p.R397Q	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	1038	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GCTCGAAGTCGAATCACAAAG	0.478													5	65					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28971130	28971130	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28971130G>A	uc002kwq.2	+	7	909	c.774G>A	c.(772-774)AAG>AAA	p.K258K	DSG4_uc002kwr.2_Silent_p.K258K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	258	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GTAGAATCAAGGTTTTAGACG	0.393													3	48					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28991248	28991248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:28991248G>A	uc002kwq.2	+	15	2327	c.2192G>A	c.(2191-2193)GGA>GAA	p.G731E	DSG4_uc002kwr.2_Missense_Mutation_p.G750E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	731	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGTGTATCGGGAGTGGAGCTC	0.463													16	114					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29040878	29040878	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:29040878A>G	uc002kws.2	+	7	876	c.767A>G	c.(766-768)AAA>AGA	p.K256R		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	256	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTAATATTAAAGTGAAAGAT	0.343													8	39					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29054212	29054212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:29054212G>A	uc002kws.2	+	15	2339	c.2230G>A	c.(2230-2232)GGA>AGA	p.G744R	DSG3_uc002kwt.2_Missense_Mutation_p.G26R	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	744	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GACAGTGTCAGGAGCTGCTTC	0.537													7	61					0	0	1	0	0
MCART2	147407	broad.mit.edu	37	18	29339949	29339949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:29339949C>T	uc002kxa.2	-	1	895	c.676G>A	c.(676-678)GGA>AGA	p.G226R		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	226	Helical; Name=5; (Potential).|Solcar 3.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			CACAAGAATCCCAACATGGCA	0.448													7	76					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30350423	30350423	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:30350423G>A	uc002kxm.1	-	2	520	c.132C>T	c.(130-132)TTC>TTT	p.F44F		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	44	BTB.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TGTGGCAATGGAACTGCTGGC	0.672													5	87					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30926343	30926343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:30926343C>T	uc002kxn.2	-	8	632	c.490G>A	c.(490-492)GAA>AAA	p.E164K	C18orf34_uc010xbr.1_Missense_Mutation_p.E164K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E164K|C18orf34_uc002kxp.2_Missense_Mutation_p.E164K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	164	Potential.									ovary(1)	1						AGCAATGTTTCCATTTCCTGC	0.368													6	80					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31312028	31312028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:31312028G>A	uc010dmg.1	+	9	1031	c.976G>A	c.(976-978)GGA>AGA	p.G326R	ASXL3_uc002kxq.2_Missense_Mutation_p.G33R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	326					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACTGGCAGAAGGTAAATTTGT	0.393													5	71					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31319920	31319920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:31319920C>T	uc010dmg.1	+	11	2607	c.2552C>T	c.(2551-2553)TCA>TTA	p.S851L	ASXL3_uc002kxq.2_Missense_Mutation_p.S558L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	851					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TACCCTGCTTCAATTCCAGAA	0.388													6	26					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325667	31325667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:31325667C>T	uc010dmg.1	+	12	5910	c.5855C>T	c.(5854-5856)TCC>TTC	p.S1952F	ASXL3_uc002kxq.2_Missense_Mutation_p.S1659F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1952					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CAGGCCTCTTCCAAGACCCCA	0.532													7	64					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43316484	43316484	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:43316484C>T	uc010xcn.1	+	7	853	c.534C>T	c.(532-534)CTC>CTT	p.L178L	SLC14A1_uc010dnk.2_Silent_p.L234L|SLC14A1_uc002lbf.3_Silent_p.L178L|SLC14A1_uc002lbg.3_Intron|SLC14A1_uc010xco.1_Silent_p.L73L|SLC14A1_uc002lbh.3_Silent_p.L70L|SLC14A1_uc002lbi.3_Silent_p.L46L|SLC14A1_uc002lbj.3_Silent_p.L234L|SLC14A1_uc002lbk.3_Silent_p.L178L	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	178	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						TCTTCACCCTCCCTTTCAACA	0.433													8	130					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43469811	43469811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:43469811G>A	uc002lbm.2	-	28	5004	c.4904C>T	c.(4903-4905)CCA>CTA	p.P1635L	KIAA1632_uc010xcq.1_Missense_Mutation_p.P189L|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.P510L	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1635					autophagy						0						ATTAAGTGATGGTGGTTTAGC	0.378													10	101					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44549217	44549217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44549217G>A	uc010dnr.2	-	1	1082	c.1082C>T	c.(1081-1083)TCG>TTG	p.S361L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_001100817	NP_001094287	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	361	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTCAAGAACCGAGTAGGGGAC	0.632													7	425					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555169	44555169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44555169G>A	uc010xdb.1	-	1	1281	c.1045C>T	c.(1045-1047)CCG>TCG	p.P349S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	349	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AGGGCGTCCGGATTGTTCCTA	0.637													8	378					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555176	44555176	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44555176C>T	uc010xdb.1	-	1	1274	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	346	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CCGGATTGTTCCTAGGCACCC	0.652													7	339					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555239	44555239	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44555239G>A	uc010xdb.1	-	1	1211	c.975C>T	c.(973-975)GGC>GGT	p.G325G	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	325	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CAGGCCTGGAGCCCGAGTACA	0.672													8	301					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559927	44559927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44559927C>T	uc002lcr.1	-	1	2062	c.1709G>A	c.(1708-1710)AGA>AAA	p.R570K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	570	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GTCTTTCTTTCTGCGATACAG	0.498													8	43					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560508	44560508	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44560508G>A	uc002lcr.1	-	1	1481	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	376					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TGGGCTGCTCGAATTCCTCAG	0.507													10	92					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560590	44560590	+	Missense_Mutation	SNP	C	T	T	rs2571029		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44560590C>T	uc002lcr.1	-	1	1399	c.1046G>A	c.(1045-1047)GGG>GAG	p.G349E	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	349					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CGGTGGCTTCCCCTCTTGAGT	0.587													5	65					0	0	1	0	0
KATNAL2	83473	broad.mit.edu	37	18	44593483	44593483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:44593483C>T	uc002lco.2	+	8	796	c.602C>T	c.(601-603)CCT>CTT	p.P201L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	273						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						GTTGTGTATCCTATAAGGGTA	0.433													3	31					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566609	45566609	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:45566609C>T	uc002lda.2	-	1	886	c.870G>A	c.(868-870)AAG>AAA	p.K290K	ZBTB7C_uc002ldb.2_Silent_p.K290K|ZBTB7C_uc010dnu.2_Silent_p.K299K|ZBTB7C_uc010dnv.2_Silent_p.K312K|ZBTB7C_uc010dnw.2_Silent_p.K290K|ZBTB7C_uc010dnx.1_Silent_p.K290K|ZBTB7C_uc010dny.1_Silent_p.K290K|ZBTB7C_uc010dnz.1_Silent_p.K312K|ZBTB7C_uc010dob.1_Silent_p.K290K|ZBTB7C_uc010doc.1_Silent_p.K299K|ZBTB7C_uc010dod.1_Silent_p.K312K|ZBTB7C_uc010doe.1_Silent_p.K290K|ZBTB7C_uc010dof.1_Silent_p.K290K|ZBTB7C_uc010dog.1_Silent_p.K290K|ZBTB7C_uc010doh.1_Silent_p.K299K|ZBTB7C_uc010doi.1_Silent_p.K290K|ZBTB7C_uc010doj.1_Silent_p.K299K|ZBTB7C_uc010dok.1_Silent_p.K339K|ZBTB7C_uc010dol.1_Silent_p.K299K|ZBTB7C_uc010doa.1_Silent_p.K312K|ZBTB7C_uc010don.1_Silent_p.K298K|ZBTB7C_uc010doo.1_Silent_p.K290K|ZBTB7C_uc010dop.1_Silent_p.K290K|ZBTB7C_uc010doq.1_Silent_p.K299K|ZBTB7C_uc010dor.1_Silent_p.K312K|ZBTB7C_uc010dos.1_Silent_p.K290K|ZBTB7C_uc010dot.1_Silent_p.K290K|ZBTB7C_uc010dou.1_Silent_p.K299K|ZBTB7C_uc010dom.1_Silent_p.K299K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	290						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCTCCTCCTTGATCTTCC	0.622													5	83					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567101	45567101	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:45567101G>A	uc002lda.2	-	1	394	c.378C>T	c.(376-378)ATC>ATT	p.I126I	ZBTB7C_uc002ldb.2_Silent_p.I126I|ZBTB7C_uc010dnu.2_Silent_p.I135I|ZBTB7C_uc010dnv.2_Silent_p.I148I|ZBTB7C_uc010dnw.2_Silent_p.I126I|ZBTB7C_uc010dnx.1_Silent_p.I126I|ZBTB7C_uc010dny.1_Silent_p.I126I|ZBTB7C_uc010dnz.1_Silent_p.I148I|ZBTB7C_uc010dob.1_Silent_p.I126I|ZBTB7C_uc010doc.1_Silent_p.I135I|ZBTB7C_uc010dod.1_Silent_p.I148I|ZBTB7C_uc010doe.1_Silent_p.I126I|ZBTB7C_uc010dof.1_Silent_p.I126I|ZBTB7C_uc010dog.1_Silent_p.I126I|ZBTB7C_uc010doh.1_Silent_p.I135I|ZBTB7C_uc010doi.1_Silent_p.I126I|ZBTB7C_uc010doj.1_Silent_p.I135I|ZBTB7C_uc010dok.1_Silent_p.I175I|ZBTB7C_uc010dol.1_Silent_p.I135I|ZBTB7C_uc010doa.1_Silent_p.I148I|ZBTB7C_uc010don.1_Silent_p.I134I|ZBTB7C_uc010doo.1_Silent_p.I126I|ZBTB7C_uc010dop.1_Silent_p.I126I|ZBTB7C_uc010doq.1_Silent_p.I135I|ZBTB7C_uc010dor.1_Silent_p.I148I|ZBTB7C_uc010dos.1_Silent_p.I126I|ZBTB7C_uc010dot.1_Silent_p.I126I|ZBTB7C_uc010dou.1_Silent_p.I135I|ZBTB7C_uc010dom.1_Silent_p.I135I	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	126	Glu-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CAGGCTCCATGATCTCCAGGC	0.323													5	32					0	0	1	0	0
KIAA0427	9811	broad.mit.edu	37	18	46383995	46383995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:46383995C>T	uc002ldc.2	+	11	1849	c.1564C>T	c.(1564-1566)CTT>TTT	p.L522F	KIAA0427_uc002ldd.2_Missense_Mutation_p.L524F|KIAA0427_uc002lde.3_Missense_Mutation_p.L151F	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	522	MIF4G.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						AGATGCTGTCCTTTGCTGCTC	0.547													14	128					0	0	1	0	0
DYM	54808	broad.mit.edu	37	18	46956741	46956741	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:46956741G>A	uc002ldi.1	-	2	389	c.24C>T	c.(22-24)ATC>ATT	p.I8I	DYM_uc010xdf.1_Silent_p.I8I	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	8						Golgi apparatus					0						GAAGATCGCCGATTCTGCTGC	0.363													5	80					0	0	1	0	0
ACAA2	10449	broad.mit.edu	37	18	47317850	47317850	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:47317850G>A	uc002ldw.3	-	7	1270	c.873C>T	c.(871-873)ATC>ATT	p.I291I	ACAA2_uc002ldx.3_Silent_p.I288I	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	291					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						CAATACCCATGATAGAGGGAT	0.388													5	94					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47389690	47389690	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:47389690T>C	uc002leb.2	-	29	4139	c.3851A>G	c.(3850-3852)AAC>AGC	p.N1284S	MYO5B_uc002lea.2_Missense_Mutation_p.N425S	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1284					protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GGCATTAATGTTCGGCTCCTA	0.428													5	83					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47433000	47433000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:47433000C>T	uc002leb.2	-	19	2491	c.2203G>A	c.(2203-2205)GAC>AAC	p.D735N		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	735	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TTGTCGGGGTCCTTTACAAGG	0.567													10	61					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47581688	47581688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:47581688C>T	uc002leb.2	-	2	376	c.88G>A	c.(88-90)GAC>AAC	p.D30N	MYO5B_uc002lec.1_Missense_Mutation_p.D29N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	30	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCTTTGTAGTCCTTGGTTAAC	0.527													8	85					0	0	1	0	0
SKA1	220134	broad.mit.edu	37	18	47918586	47918586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:47918586G>A	uc002let.2	+	7	921	c.737G>A	c.(736-738)GGG>GAG	p.G246E	SKA1_uc002leu.2_Missense_Mutation_p.G246E|SKA1_uc010xdl.1_Missense_Mutation_p.G200E	NM_145060	NP_659497	Q96BD8	SKA1_HUMAN	spindle and KT associated 1	246					cell division|chromosome segregation|mitotic anaphase|mitotic prometaphase|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytosol|spindle microtubule	microtubule binding				0						GAGGTCCGAGGGGGAGGACTT	0.398													6	102					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48327822	48327822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:48327822G>A	uc002lew.3	-	6	776	c.482C>T	c.(481-483)GCC>GTC	p.A161V	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Missense_Mutation_p.A175V|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Missense_Mutation_p.A161V	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	161	HEAT.					nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CCCGGCAAAGGCAGCCAATTG	0.463													13	141					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48333184	48333184	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:48333184G>A	uc002lew.3	-	4	430	c.136C>T	c.(136-138)CTG>TTG	p.L46L	MRO_uc010xdn.1_Silent_p.L46L|MRO_uc010dpa.2_Silent_p.L60L|MRO_uc010dpb.2_Silent_p.L60L|MRO_uc010dpc.2_Silent_p.L46L|MRO_uc002lex.3_Silent_p.L46L	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	46						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		ACATTCTTCAGAGGCTCCCGC	0.478													12	103					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50734081	50734081	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:50734081G>A	uc002lfe.1	+	11	2342	c.1755G>A	c.(1753-1755)CTG>CTA	p.L585L	DCC_uc010xdr.1_Silent_p.L433L|DCC_uc010dpf.1_Silent_p.L240L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	585	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTTATAAACTGGAAGGCCTGA	0.373													4	61					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	51053024	51053024	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:51053024C>T	uc002lfe.1	+	28	4736	c.4149C>T	c.(4147-4149)TCC>TCT	p.S1383S	DCC_uc010dpf.1_Silent_p.S1016S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1383	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AAACAGCCTCCCTTGGGTTGG	0.473													4	93					0	0	1	0	0
STARD6	147323	broad.mit.edu	37	18	51851172	51851172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:51851172C>T	uc010xdt.1	-	6	553	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	185	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		ATGGTTTTTTCAATTATTGAT	0.358													5	36					0	0	1	0	0
STARD6	147323	broad.mit.edu	37	18	51880872	51880872	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:51880872C>T	uc010xdt.1	-	1	72	c.72G>A	c.(70-72)TGG>TGA	p.W24*		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	24	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TAACCACTTTCCAGCCTGATG	0.294													6	87					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52928755	52928755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:52928755C>T	uc002lfz.2	-	12	1544	c.932G>A	c.(931-933)GGA>GAA	p.G311E	TCF4_uc002lfw.3_Missense_Mutation_p.G151E|TCF4_uc010xdu.1_Missense_Mutation_p.G181E|TCF4_uc010xdv.1_Missense_Mutation_p.G181E|TCF4_uc002lfx.2_Missense_Mutation_p.G240E|TCF4_uc010xdw.1_Missense_Mutation_p.G181E|TCF4_uc002lfy.2_Missense_Mutation_p.G269E|TCF4_uc010xdx.1_Missense_Mutation_p.G287E|TCF4_uc010dph.1_Missense_Mutation_p.G311E|TCF4_uc010xdy.1_Missense_Mutation_p.G287E|TCF4_uc002lga.2_Missense_Mutation_p.G413E|TCF4_uc002lgb.1_Missense_Mutation_p.G151E|TCF4_uc010dpi.2_Missense_Mutation_p.G317E|TCF4_uc002lfv.2_Missense_Mutation_p.G95E	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	311					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		TGCCCCGCTTCCTCTATTTGC	0.443													21	208					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024443	55024443	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:55024443T>C	uc002lgn.2	+	3	959	c.602T>C	c.(601-603)GTT>GCT	p.V201A		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	201	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CAAAGAGATGTTGGAAGAAAA	0.423													10	103					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024487	55024487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:55024487G>A	uc002lgn.2	+	3	1003	c.646G>A	c.(646-648)GAA>AAA	p.E216K		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	216	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		CAGCATCCTGGAAAAATATTA	0.408													10	82					0	0	1	0	0
NARS	4677	broad.mit.edu	37	18	55273872	55273872	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:55273872C>T	uc002lgs.2	-	10	1341	c.1113G>A	c.(1111-1113)GGG>GGA	p.G371G	NARS_uc002lgt.2_Silent_p.G370G|NARS_uc010xea.1_Silent_p.G122G	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	371					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	GCACTATGCTCCCTGCAGGTG	0.458													17	173					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56171324	56171324	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:56171324A>C	uc002lhj.3	-	11	6300	c.6086T>G	c.(6085-6087)GTG>GGG	p.V2029G		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	2029	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CTCCTCCTCCACTGTAGCATA	0.448													23	200					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56246452	56246452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:56246452C>T	uc002lhj.3	-	4	1770	c.1556G>A	c.(1555-1557)AGA>AAA	p.R519K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	519							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCCCCCCACTCTCTTGTCAGC	0.517											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	234					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61225599	61225599	+	Missense_Mutation	SNP	C	G	G	rs144275600		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61225599C>G	uc010xen.1	+	2	183	c.183C>G	c.(181-183)AAC>AAG	p.N61K	SERPINB12_uc010xeo.1_Missense_Mutation_p.N61K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	61					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TACACTTCAACGAATTTTCCC	0.413													12	82					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306888	61306888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61306888C>T	uc002ljf.2	-	6	678	c.592G>A	c.(592-594)GAA>AAA	p.E198K	SERPINB4_uc002lje.2_Missense_Mutation_p.E198K|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	198					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CAAAATTTTTCCTCTTTAGTG	0.308													3	23					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306984	61306984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61306984C>T	uc002ljf.2	-	6	582	c.496G>A	c.(496-498)GGG>AGG	p.G166R	SERPINB4_uc002lje.2_Missense_Mutation_p.G166R|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	166					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CCAATAGTCCCATCAGGAAAT	0.348													5	50					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61449756	61449756	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61449756C>T	uc002ljl.2	+	2	246	c.150C>T	c.(148-150)TCC>TCT	p.S50S	SERPINB7_uc002ljm.2_Silent_p.S50S|SERPINB7_uc010xet.1_Silent_p.S50S|SERPINB7_uc010dqg.2_Silent_p.S50S	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	50					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				AAGATGACTCCCTCTCTCAGA	0.478													10	91					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570518	61570518	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61570518C>T	uc010xeu.1	+	9	1560	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	SERPINB2_uc002ljo.2_Silent_p.F409F|SERPINB2_uc010dqh.2_Silent_p.F339F|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	409					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TTTTATTTTTCGGCAGATTTT	0.388													4	48					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61582854	61582854	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61582854C>A	uc010xev.1	+	2	200	c.110C>A	c.(109-111)ACT>AAT	p.T37N	SERPINB2_uc002ljp.1_Missense_Mutation_p.T178N|SERPINB2_uc002ljq.1_Missense_Mutation_p.T151N|SERPINB10_uc010xew.1_Missense_Mutation_p.T37N	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	37						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				AGCATCTCAACTTCCTTGACC	0.448													8	56					4.68919e-08	4.73605e-08	1	1	0
SERPINB8	5271	broad.mit.edu	37	18	61654189	61654189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:61654189C>T	uc002ljv.2	+	7	971	c.802C>T	c.(802-804)CTT>TTT	p.L268F	SERPINB8_uc002lju.2_Missense_Mutation_p.L268F|SERPINB8_uc010xex.1_Missense_Mutation_p.L86F	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	268					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				TCAAGTTTTCCTTCCCAGATT	0.398													8	88					0	0	1	0	0
CCDC102B	79839	broad.mit.edu	37	18	66506047	66506047	+	Silent	SNP	G	A	A	rs147553785		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:66506047G>A	uc002lkk.2	+	5	934	c.711G>A	c.(709-711)ACG>ACA	p.T237T	CCDC102B_uc002lki.2_Silent_p.T237T|CCDC102B_uc002lkj.1_Silent_p.T237T	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	237										ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ACGGTGAAACGAAAACTGGGC	0.373													8	66					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71740901	71740901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:71740901G>A	uc002lle.2	-	10	1436	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.S443F	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	367										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		GCACACCGGGGAACTGAAACA	0.478													17	183					0	0	1	0	0
CNDP2	55748	broad.mit.edu	37	18	72178143	72178143	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:72178143C>T	uc002llm.1	+	6	714	c.552C>T	c.(550-552)TTC>TTT	p.F184F	CNDP2_uc002lln.1_Silent_p.F100F|CNDP2_uc010dqs.2_Silent_p.F20F	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	184						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		AAGACACATTCTTTAAGGATG	0.502													10	124					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72343480	72343480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:72343480C>T	uc002llw.2	+	1	562	c.505C>T	c.(505-507)CCC>TCC	p.P169S	ZNF407_uc010xfc.1_Missense_Mutation_p.P169S|ZNF407_uc010dqu.1_Missense_Mutation_p.P169S|ZNF407_uc002llu.2_Missense_Mutation_p.P168S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		ATCTCCTTTCCCCCCGAAAGA	0.393													9	84					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72346310	72346310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:72346310C>T	uc002llw.2	+	1	3392	c.3335C>T	c.(3334-3336)TCA>TTA	p.S1112L	ZNF407_uc010xfc.1_Missense_Mutation_p.S1112L|ZNF407_uc010dqu.1_Missense_Mutation_p.S1112L|ZNF407_uc002llu.2_Missense_Mutation_p.S1111L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CAAATAATTTCAGGTCAACCA	0.353													3	18					0	0	1	0	0
ATP9B	374868	broad.mit.edu	37	18	77104307	77104307	+	Nonsense_Mutation	SNP	C	T	T	rs147932692		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:77104307C>T	uc002lmx.2	+	21	2439	c.2425C>T	c.(2425-2427)CGA>TGA	p.R809*	ATP9B_uc002lmw.1_Nonsense_Mutation_p.R809*|ATP9B_uc002lmz.1_Nonsense_Mutation_p.R503*|ATP9B_uc002lna.2_5'UTR|ATP9B_uc002lnb.1_5'Flank	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	809	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GAATGCATTTCGAAGGAAGCA	0.473													13	60					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77170834	77170834	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:77170834T>G	uc010xfg.1	+	2	1012	c.559T>G	c.(559-561)TCC>GCC	p.S187A	NFATC1_uc002lnc.1_Missense_Mutation_p.S187A|NFATC1_uc010xff.1_Missense_Mutation_p.S187A|NFATC1_uc002lnd.2_Missense_Mutation_p.S187A|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.S187A|NFATC1_uc010xfi.1_Missense_Mutation_p.S174A|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.S174A|NFATC1_uc002lng.2_Missense_Mutation_p.S174A|NFATC1_uc010xfk.1_Missense_Mutation_p.S174A	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	187	Trans-activation domain A (TAD-A).			S->A: No effect on subcellular localization.	intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CTCAGAGGCCTCCTCCTACGA	0.677													13	143					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77211023	77211023	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:77211023C>T	uc010xfg.1	+	5	2112	c.1659C>T	c.(1657-1659)ATC>ATT	p.I553I	NFATC1_uc002lnc.1_Silent_p.I553I|NFATC1_uc010xff.1_Silent_p.I553I|NFATC1_uc002lnd.2_Silent_p.I553I|NFATC1_uc002lne.2_Silent_p.I81I|NFATC1_uc010xfh.1_Silent_p.I553I|NFATC1_uc010xfi.1_Silent_p.I540I|NFATC1_uc010xfj.1_Silent_p.I81I|NFATC1_uc002lnf.2_Silent_p.I540I|NFATC1_uc002lng.2_Silent_p.I540I|NFATC1_uc010xfk.1_Silent_p.I540I	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	553	RHD.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		AGACGGACATCGGGAGGAAGA	0.567													10	191					0	0	1	0	0
SHC2	25759	broad.mit.edu	37	19	430694	430694	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:430694G>A	uc002loq.3	-	9	1164	c.1164C>T	c.(1162-1164)TCC>TCT	p.S388S	SHC2_uc002lop.3_Silent_p.S129S	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	388	CH1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTACCGGTGGACCCCACGT	0.627													3	28					0	0	1	0	0
RNF126	55658	broad.mit.edu	37	19	652848	652848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:652848C>T	uc010drs.2	-	2	218	c.112G>A	c.(112-114)GAG>AAG	p.E38K	RNF126_uc002lpi.2_5'Flank	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	38							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAAGCTCCTCGATAAAACCA	0.597													4	37					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1046244	1046244	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:1046244C>T	uc002lqw.3	+	13	1692	c.1461C>T	c.(1459-1461)GGC>GGT	p.G487G	ABCA7_uc010dsb.1_Silent_p.G349G	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	487	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGACCCTGGCCCAGCCGCGG	0.632													8	202					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1057927	1057927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:1057927C>T	uc002lqw.3	+	36	5125	c.4894C>T	c.(4894-4896)CCG>TCG	p.P1632S	ABCA7_uc002lqy.2_Intron|ABCA7_uc010dsc.2_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1632	Helical; (Potential).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCGATCACACCGCTCATGTA	0.507													11	169					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1808281	1808281	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:1808281G>A	uc002ltw.2	-	5	690	c.456C>T	c.(454-456)AAC>AAT	p.N152N	ATP8B3_uc002ltv.2_Silent_p.N99N|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_5'Flank|ATP8B3_uc002ltz.1_Silent_p.N99N	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	152	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		gctcgtacaggttcagcggca	0.254													8	76					0	0	1	0	0
AP3D1	8943	broad.mit.edu	37	19	2151282	2151282	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:2151282G>A	uc002luz.2	-	1	275	c.52C>T	c.(52-54)CTG>TTG	p.L18L	AP3D1_uc002luy.2_Silent_p.L18L|AP3D1_uc002lva.2_Silent_p.L18L	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	18					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGTCCTGCAGATTCTTGTCG	0.612													12	52					0	0	1	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408369	2408369	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:2408369G>A	uc010xgx.1	+	7	756	c.756G>A	c.(754-756)ACG>ACA	p.T252T	TMPRSS9_uc002lvv.1_Silent_p.T286T	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	252	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCCGACGAAGTGGGTGG	0.502													5	68					0	0	1	0	0
LMNB2	84823	broad.mit.edu	37	19	2433865	2433865	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:2433865G>A	uc002lvy.2	-	8	1468	c.1381C>T	c.(1381-1383)CTG>TTG	p.L461L	LMNB2_uc002lwa.1_Silent_p.L481L	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	461	Tail.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGCCCTCCAGGTCGATCTCC	0.662													7	123					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2873536	2873536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:2873536G>A	uc002lwp.1	+	2	133	c.46G>A	c.(46-48)GAG>AAG	p.E16K	ZNF556_uc002lwq.2_Missense_Mutation_p.E16K	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	16	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTCACGCTGGAGGAGTGGGC	0.483													14	102					0	0	1	0	0
ZNF77	58492	broad.mit.edu	37	19	2936550	2936550	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:2936550G>A	uc002lws.3	-	3	414	c.283C>T	c.(283-285)CAG>TAG	p.Q95*		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	95	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		ATTTGGTGCTGATCTCCAGTG	0.443													9	55					0	0	1	0	0
GNA15	2769	broad.mit.edu	37	19	3151736	3151736	+	Missense_Mutation	SNP	G	A	A	rs139079286		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:3151736G>A	uc002lxf.2	+	4	775	c.517G>A	c.(517-519)GAG>AAG	p.E173K		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	173					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	p.E173K(1)		skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		CATCACCGAGGAGGGCTACGT	0.627													10	211					0	0	1	0	0
TICAM1	148022	broad.mit.edu	37	19	4817416	4817416	+	Missense_Mutation	SNP	G	A	A	rs139641703		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:4817416G>A	uc002mbi.2	-	2	1225	c.974C>T	c.(973-975)CCC>CTC	p.P325L		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	325	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GACAGAGCAGGGGTTTTTGAC	0.572													8	53					0	0	1	0	0
ACSBG2	81616	broad.mit.edu	37	19	6182822	6182822	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6182822A>T	uc002mef.1	+	9	1194	c.967A>T	c.(967-969)ATT>TTT	p.I323F	ACSBG2_uc002mee.1_Missense_Mutation_p.I136F|ACSBG2_uc002meg.1_Missense_Mutation_p.I323F|ACSBG2_uc002meh.1_Missense_Mutation_p.I323F|ACSBG2_uc002mei.1_Missense_Mutation_p.I273F|ACSBG2_uc010xiz.1_Missense_Mutation_p.I323F	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	323					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGTGCCTCAAATTTGGGAGAA	0.463													4	33					0	0	1	0	0
ACSBG2	81616	broad.mit.edu	37	19	6187317	6187317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6187317G>A	uc002mef.1	+	12	1791	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	ACSBG2_uc002mee.1_Missense_Mutation_p.E335K|ACSBG2_uc002meg.1_Missense_Mutation_p.E522K|ACSBG2_uc002meh.1_Missense_Mutation_p.E522K|ACSBG2_uc002mei.1_Missense_Mutation_p.E472K|ACSBG2_uc010xiz.1_Missense_Mutation_p.E522K	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	522					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGCTGGTGGTGAAAATGTGCC	0.418													12	134					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6307229	6307229	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6307229C>T	uc002mel.2	-	5	639	c.561G>A	c.(559-561)TGG>TGA	p.W187*		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	187	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GGTCACTGATCCAGCTGGTCA	0.562													8	93					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6692978	6692979	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6692978_6692979CC>AT	uc002mfm.2	-	26	3408_3409	c.3346_3347GG>AT	c.(3346-3348)GGG>ATG	p.G1116M	C3_uc002mfl.2_Translation_Start_Site	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1116					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CTGGAAGACCCCGTCGGGCTTC	0.554													11	163					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6694441	6694441	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6694441C>T	uc002mfm.2	-	24	3216	c.3154_splice	c.e24+1	p.G1052_splice	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor						complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		AGGGAGCCCACCCTTCTTGAT	0.627													6	56					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6714067	6714067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6714067C>T	uc002mfm.2	-	7	771	c.709G>A	c.(709-711)GAG>AAG	p.E237K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	237					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCTGTAGGCTCCACTATGACC	0.632													13	118					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6853068	6853068	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6853068G>A	uc002mfu.1	+	25	2407	c.2310G>A	c.(2308-2310)AAG>AAA	p.K770K	VAV1_uc010xjh.1_Silent_p.K738K|VAV1_uc010dva.1_Silent_p.K748K|VAV1_uc002mfv.1_Silent_p.K715K	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	770					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						AGCCTGAAAAGAGAACCATCA	0.532													4	67					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6916361	6916361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:6916361G>A	uc002mfw.2	+	12	1440	c.1402G>A	c.(1402-1404)GAG>AAG	p.E468K	EMR1_uc010dvc.2_Missense_Mutation_p.E468K|EMR1_uc010dvb.2_Missense_Mutation_p.E416K|EMR1_uc010xji.1_Missense_Mutation_p.E327K|EMR1_uc010xjj.1_Missense_Mutation_p.E291K	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	468	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TTCCACAATTGAGGAATCTGA	0.348													9	143					0	0	1	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7531995	7531995	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7531995G>A	uc002mgi.2	+	15	2689	c.2436G>A	c.(2434-2436)CTG>CTA	p.L812L	ARHGEF18_uc010xjm.1_Silent_p.L654L|ARHGEF18_uc002mgh.2_Silent_p.L654L|ARHGEF18_uc002mgj.1_Silent_p.L455L	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	812	Potential.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				AGCTGCTCCTGAACCTTCAGG	0.667													12	146					0	0	1	0	0
PEX11G	92960	broad.mit.edu	37	19	7546945	7546945	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7546945G>A	uc002mgk.1	-	3	411	c.402C>T	c.(400-402)GCC>GCT	p.A134A	PEX11G_uc002mgl.1_Silent_p.A64A	NM_080662	NP_542393	Q96HA9	PX11C_HUMAN	peroxisomal biogenesis factor 11 gamma	134	Helical; (Potential).					integral to membrane|peroxisomal membrane					0						GCAGAGAGAGGGCCCACAGGG	0.657													3	19					0	0	1	0	0
C19orf45	374877	broad.mit.edu	37	19	7571947	7571947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7571947G>A	uc002mgm.2	+	8	1354	c.1213G>A	c.(1213-1215)GAT>AAT	p.D405N		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	405											0						TCCAGAATTCGATTTTTTAAC	0.577													4	35					0	0	1	0	0
PNPLA6	10908	broad.mit.edu	37	19	7621349	7621349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7621349C>T	uc010xjq.1	+	27	3329	c.3134C>T	c.(3133-3135)TCG>TTG	p.S1045L	PNPLA6_uc002mgq.1_Missense_Mutation_p.S997L|PNPLA6_uc010xjp.1_Missense_Mutation_p.S970L|PNPLA6_uc002mgr.1_Missense_Mutation_p.S997L|PNPLA6_uc002mgs.2_Missense_Mutation_p.S1035L|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1036	Patatin.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						AGCATGACTTCGGTGCTGGAA	0.532													29	337					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7810561	7810561	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7810561G>A	uc002mht.2	-	4	658	c.591C>T	c.(589-591)ACC>ACT	p.T197T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T173T|CD209_uc002mhr.2_Silent_p.T173T|CD209_uc002mhs.2_Silent_p.T173T|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T197T|CD209_uc002mhq.2_Silent_p.T197T|CD209_uc002mhv.2_Silent_p.T173T|CD209_uc002mhx.2_Silent_p.T153T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	197	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGGGTCAGCTCCT	0.567													7	131					0	0	1	0	0
LRRC8E	80131	broad.mit.edu	37	19	7965092	7965092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:7965092G>A	uc002mir.2	+	3	1786	c.1685G>A	c.(1684-1686)AGG>AAG	p.R562K		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	562	LRR 3.					integral to membrane				lung(1)|pancreas(1)	2						CACCTGCAGAGGCTCAGCCTG	0.662													4	63					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8146321	8146321	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8146321G>A	uc002mjf.2	-	57	7278	c.7257C>T	c.(7255-7257)CTC>CTT	p.L2419L	FBN3_uc002mje.2_Silent_p.L258L	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2419	EGF-like 39; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGTTTTTGCAGAGGAAGGTAC	0.582													6	112					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8176916	8176916	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8176916C>T	uc002mjf.2	-	30	3927	c.3906G>A	c.(3904-3906)GGG>GGA	p.G1302G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1302	EGF-like 19; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGCTGAAACTCCCCGGGATGT	0.592													6	194					0	0	1	0	0
LASS4	79603	broad.mit.edu	37	19	8321833	8321833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8321833G>A	uc002mjg.2	+	9	933	c.613G>A	c.(613-615)GAT>AAT	p.D205N	LASS4_uc002mjh.2_Missense_Mutation_p.D154N|LASS4_uc002mji.2_Missense_Mutation_p.D41N|LASS4_uc010dvz.2_Missense_Mutation_p.D205N	NM_024552	NP_078828	Q9HA82	CERS4_HUMAN	LAG1 homolog, ceramide synthase 4	205	TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(1)	1						TCTACTGCAGGATTTCAAGGA	0.577													47	431					0	0	1	0	0
CD320	51293	broad.mit.edu	37	19	8367400	8367401	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8367400_8367401CC>TT	uc002mjj.1	-	5	860_861	c.795_796GG>AA	c.(793-798)CTGGTG>CTAATG	p.V266M	CD320_uc002mjk.1_RNA|CD320_uc002mjl.1_Missense_Mutation_p.V224M	NM_016579	NP_057663	Q9NPF0	CD320_HUMAN	8D6 antigen isoform 1 precursor	266	Cytoplasmic (Potential).				regulation of cell growth	endoplasmic reticulum|integral to membrane	growth factor activity				0						TTCATGGCCACCAGTAACCCCA	0.644													9	115					0	0	1	0	0
HNRNPM	4670	broad.mit.edu	37	19	8550627	8550627	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8550627C>T	uc010dwe.2	+	14	1395	c.1315C>T	c.(1315-1317)CTG>TTG	p.L439L	HNRNPM_uc010xke.1_Silent_p.L385L|HNRNPM_uc010dwd.2_Silent_p.L400L|HNRNPM_uc002mka.2_Silent_p.L304L|HNRNPM_uc002mkb.1_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	439	27 X 6 AA repeats of [GEVSTPAN]-[ILMV]- [DE]-[RH]-[MLVI]-[GAV].				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						GCGCATGGGCCTGGTCATGGA	0.701													11	136					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8595250	8595250	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8595250C>T	uc002mkg.2	-	21	2273	c.2159_splice	c.e21-1	p.A720_splice		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF							unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						ATGTTGGAAGCTGCGGGGACA	0.642													13	236					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8660665	8660665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8660665G>A	uc002mkj.1	-	12	1734	c.1460C>T	c.(1459-1461)TCG>TTG	p.S487L	ADAMTS10_uc002mkk.1_Missense_Mutation_p.S119L	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	487	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACACTGACGCGATTTGACTCC	0.612													15	284					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8668687	8668687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8668687C>T	uc002mkj.1	-	5	791	c.517G>A	c.(517-519)GAA>AAA	p.E173K	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	173					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGTCCACTTTCCTCCGGGCTC	0.602													4	65					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8668757	8668757	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8668757G>A	uc002mkj.1	-	5	721	c.447C>T	c.(445-447)ATC>ATT	p.I149I	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	149					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CGTCTGCCACGATCAGGCCGT	0.552													5	65					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8807924	8807924	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8807924C>T	uc002mkl.2	-	1	1249	c.1128G>A	c.(1126-1128)AGG>AGA	p.R376R		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	376						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CGGAGAAATTCCTGGTGGGCT	0.667													3	40					0	0	1	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953433	8953433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8953433C>T	uc002mko.2	+	1	165	c.79C>T	c.(79-81)CCT>TCT	p.P27S		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	27	Transcription repressor.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CACCTCAATCCCTTTGAGAAT	0.468													6	64					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8976784	8976784	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:8976784C>T	uc002mkp.2	-	73	42486	c.42282G>A	c.(42280-42282)AAG>AAA	p.K14094K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.K894K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCTGAGCCCTTGCCCATAT	0.572													6	51					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9012850	9012850	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9012850T>C	uc002mkp.2	-	34	38798	c.38594A>G	c.(38593-38595)AAC>AGC	p.N12865S	MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12867	SEA 6.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTACTGCAGGTTGGTGATGGT	0.552													10	259					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9018545	9018545	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9018545C>T	uc002mkp.2	-	24	37833	c.37629G>A	c.(37627-37629)CTG>CTA	p.L12543L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12545	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAACAGCACCAGGAGAGGGC	0.463													16	173					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9045750	9045750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9045750C>T	uc002mkp.2	-	5	36085	c.35881G>A	c.(35881-35883)GGA>AGA	p.G11961R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11963	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACTCACTCCTTCTCCATGA	0.478													6	88					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9048086	9048086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9048086G>A	uc002mkp.2	-	5	33749	c.33545C>T	c.(33544-33546)TCA>TTA	p.S11182L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11184	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGACCAATGAAGTTGTGGT	0.458													3	24					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049005	9049005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9049005C>T	uc002mkp.2	-	5	32830	c.32626G>A	c.(32626-32628)GGA>AGA	p.G10876R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10878	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCACTACTCCTGGTACCTCA	0.468													15	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049163	9049163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9049163G>A	uc002mkp.2	-	5	32672	c.32468C>T	c.(32467-32469)TCA>TTA	p.S10823L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10825	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGACCAATGAAACTGTTGT	0.483													13	107					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060158	9060158	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9060158C>T	uc002mkp.2	-	3	27492	c.27288G>A	c.(27286-27288)TTG>TTA	p.L9096L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9098	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGAAGTGTCCAAGGTAAGGG	0.483													8	93					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060189	9060189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9060189G>A	uc002mkp.2	-	3	27461	c.27257C>T	c.(27256-27258)CCT>CTT	p.P9086L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9088	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTAGCCCCAGGAGAACCTGT	0.468													8	111					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060859	9060859	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9060859T>C	uc002mkp.2	-	3	26791	c.26587A>G	c.(26587-26589)ACC>GCC	p.T8863A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8865	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGGTGAGGTTACTGCAGAT	0.512													6	93					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061169	9061169	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9061169G>A	uc002mkp.2	-	3	26481	c.26277C>T	c.(26275-26277)TCC>TCT	p.S8759S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8761	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGATATTGTGGATTGAGCAG	0.502													5	65					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062362	9062362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9062362C>T	uc002mkp.2	-	3	25288	c.25084G>A	c.(25084-25086)GGA>AGA	p.G8362R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8364	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTCATGTCCAGAAATGGAG	0.493													4	77					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064199	9064199	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9064199G>A	uc002mkp.2	-	3	23451	c.23247C>T	c.(23245-23247)ACC>ACT	p.T7749T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7751	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCATGGGAGGTGGTGCTCA	0.517													19	152					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065032	9065032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9065032G>A	uc002mkp.2	-	3	22618	c.22414C>T	c.(22414-22416)CAT>TAT	p.H7472Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7474	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGAAAGGATGAATTTTCTCC	0.483													11	104					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065737	9065737	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9065737G>A	uc002mkp.2	-	3	21913	c.21709C>T	c.(21709-21711)CAG>TAG	p.Q7237*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7239	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTCTTTCTGAATTCTGCTA	0.468													8	129					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													3	38					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074058	9074058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9074058G>A	uc002mkp.2	-	3	13592	c.13388C>T	c.(13387-13389)ACC>ATC	p.T4463I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4465	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGAGGTATGGTTGTGACCAA	0.507													5	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9074907	9074907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9074907C>T	uc002mkp.2	-	3	12743	c.12539G>A	c.(12538-12540)GGG>GAG	p.G4180E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4182	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGACTGTGCCCTTGTGATGT	0.522													7	46					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075542	9075542	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9075542G>A	uc002mkp.2	-	3	12108	c.11904C>T	c.(11902-11904)ATC>ATT	p.I3968I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3970	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGGCTGGGATAGTGGAAT	0.493													4	24					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076530	9076530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9076530C>T	uc002mkp.2	-	3	11120	c.10916G>A	c.(10915-10917)GGA>GAA	p.G3639E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3640	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGCTGGTTCCAATGACAGT	0.448													3	44					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077304	9077304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9077304G>A	uc002mkp.2	-	3	10346	c.10142C>T	c.(10141-10143)TCA>TTA	p.S3381L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3382	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCTGTCAATGAGCTCACAGA	0.473													14	184					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085544	9085544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9085544G>A	uc002mkp.2	-	1	6475	c.6271C>T	c.(6271-6273)CCA>TCA	p.P2091S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2091	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAAAGAGTGGAAATTCAGTC	0.473													12	174					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089940	9089940	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9089940G>A	uc002mkp.2	-	1	2079	c.1875C>T	c.(1873-1875)CAC>CAT	p.H625H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	625	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGAGTAGGTGGGTTGTGC	0.577													5	86					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204120	9204120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9204120C>T	uc010xkj.1	+	1	200	c.200C>T	c.(199-201)TCC>TTC	p.S67F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						GCCAACCTGTCCCTGGTTGAT	0.557													16	147					0	0	1	0	0
ZNF559	84527	broad.mit.edu	37	19	9453161	9453161	+	Missense_Mutation	SNP	G	A	A	rs138021555	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9453161G>A	uc002mlg.2	+	7	1681	c.1034G>A	c.(1033-1035)CGA>CAA	p.R345Q	ZNF559_uc002mlf.2_Missense_Mutation_p.R114Q|ZNF559_uc010dwl.1_Missense_Mutation_p.R114Q|ZNF559_uc010xkn.1_Missense_Mutation_p.R337Q|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.R409Q|ZNF559_uc010dwk.1_Missense_Mutation_p.R114Q|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	345	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAACACAGGCGAACTCACACT	0.413													5	44					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577276	9577276	+	Missense_Mutation	SNP	G	A	A	rs150203893		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9577276G>A	uc002mlp.1	-	10	2557	c.2347C>T	c.(2347-2349)CGT>TGT	p.R783C	ZNF560_uc010dwr.1_Missense_Mutation_p.R677C	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	783	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGTGCAATACGAGCTGAGAAA	0.418													5	74					0	0	1	0	0
FBXL12	54850	broad.mit.edu	37	19	9922061	9922061	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:9922061G>A	uc002mme.2	-	3	734	c.492C>T	c.(490-492)TTC>TTT	p.F164F	FBXL12_uc002mmd.2_Silent_p.F111F|FBXL12_uc002mmf.2_Silent_p.F111F|FBXL12_uc002mmg.2_Silent_p.F111F|FBXL12_uc002mmh.2_Silent_p.F111F	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12	164	LRR 4.						protein binding			lung(1)|kidney(1)	2						GCTCGTCACGGAAGGCGGGGA	0.672													8	60					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10081680	10081680	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10081680T>G	uc002mmq.1	-	53	3939	c.3853A>C	c.(3853-3855)AAG>CAG	p.K1285Q		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1285	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGGTCTCCCTTCTCCCCTGGG	0.597													10	129					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10088126	10088126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10088126G>A	uc002mmq.1	-	43	3235	c.3149C>T	c.(3148-3150)CCC>CTC	p.P1050L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1050	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TTTGCCAGTGGGGCCAGGGGG	0.657													5	75					0	0	1	0	0
RDH8	50700	broad.mit.edu	37	19	10129507	10129507	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10129507C>T	uc002mmr.2	+	3	612	c.363C>T	c.(361-363)CTC>CTT	p.L121L		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	121					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	CTGTCCGTCTCGTCAAAGCTG	0.592													11	105					0	0	1	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220590	10220590	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10220590A>T	uc002mna.2	+	7	592	c.592A>T	c.(592-594)AGC>TGC	p.S198C	PPAN-P2RY11_uc010xla.1_Missense_Mutation_p.S198C|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mmz.1_Missense_Mutation_p.S198C|PPAN_uc002mnb.1_Missense_Mutation_p.S145C	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	198	Brix.				RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			TTCCTGCAGTAGCATCAAAGT	0.612													17	165					0	0	1	0	0
DNMT1	1786	broad.mit.edu	37	19	10248571	10248571	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10248571G>A	uc002mng.2	-	35	4362	c.4182C>T	c.(4180-4182)TCC>TCT	p.S1394S	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Silent_p.S318S|DNMT1_uc010xlc.1_Silent_p.S1410S|DNMT1_uc002mnh.2_Silent_p.S1289S|DNMT1_uc010xld.1_Silent_p.S1394S	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1394	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	TCTGGAACCAGGACTGAGGCT	0.632													3	24					0	0	1	0	0
DNMT1	1786	broad.mit.edu	37	19	10260313	10260313	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10260313T>C	uc002mng.2	-	25	2534	c.2354A>G	c.(2353-2355)GAC>GGC	p.D785G	DNMT1_uc010xlc.1_Missense_Mutation_p.D801G|DNMT1_uc002mnh.2_Missense_Mutation_p.D680G|DNMT1_uc010xld.1_Missense_Mutation_p.D785G	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	785	BAH 1.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GTTGCTGCTGTCCTCCCACAG	0.592													22	194					0	0	1	0	0
FDX1L	112812	broad.mit.edu	37	19	10426588	10426589	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10426588_10426589CC>TT	uc002mny.1	-	1	103_104	c.84_85GG>AA	c.(82-87)GGGGGC>GGAAGC	p.G29S	FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	29					electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			CCGGAAGTGCCCCCAGGTCTGT	0.673													3	43					0	0	1	0	0
AP1M2	10053	broad.mit.edu	37	19	10687887	10687887	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10687887A>C	uc002mpc.2	-	9	1118	c.1034T>G	c.(1033-1035)ATT>AGT	p.I345S	AP1M2_uc002mpd.2_Missense_Mutation_p.I347S	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	345	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			GAAAGACTTAATACTCCAAAT	0.582													3	38					0	0	1	0	0
AP1M2	10053	broad.mit.edu	37	19	10687890	10687890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:10687890C>T	uc002mpc.2	-	9	1115	c.1031G>A	c.(1030-1032)AGT>AAT	p.S344N	AP1M2_uc002mpd.2_Missense_Mutation_p.S346N	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	344	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			AGACTTAATACTCCAAATCAC	0.582													3	39					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11240292	11240292	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11240292C>T	uc002mqk.3	+	17	2661	c.2493C>T	c.(2491-2493)ACC>ACT	p.T831T	LDLR_uc010xlk.1_Silent_p.T831T|LDLR_uc010xll.1_Silent_p.T790T|LDLR_uc010xlm.1_Silent_p.T684T|LDLR_uc010xln.1_Silent_p.T653T|LDLR_uc010xlo.1_Silent_p.T663T|LDLR_uc010dxu.2_5'UTR	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	831	Required for MYLIP-triggered down- regulation of LDLR.|Cytoplasmic (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	ATCAGAAGACCACAGAGGATG	0.552													7	123					0	0	1	0	0
KANK2	25959	broad.mit.edu	37	19	11287479	11287479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11287479G>A	uc010dxv.2	-	9	2093	c.1535C>T	c.(1534-1536)TCC>TTC	p.S512F	KANK2_uc002mqm.2_Missense_Mutation_p.S520F|KANK2_uc002mqo.3_Missense_Mutation_p.S512F|KANK2_uc002mqp.1_Missense_Mutation_p.S321F	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	512											0						GGAGTCCTCGGATGACGACTC	0.582													8	61					0	0	1	0	0
ECSIT	51295	broad.mit.edu	37	19	11624640	11624640	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11624640G>A	uc002msb.2	-	3	627	c.493C>T	c.(493-495)CTG>TTG	p.L165L	ECSIT_uc002msa.1_5'Flank|ECSIT_uc010dyc.1_Silent_p.L165L|ECSIT_uc010dyd.2_Silent_p.L165L|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	165					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						ATCTGCTCCAGGACAGCAATC	0.617													3	80					0	0	1	0	0
CNN1	1264	broad.mit.edu	37	19	11651946	11651947	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11651946_11651947GG>AA	uc002msc.1	+	2	283_284	c.119_120GG>AA	c.(118-120)GGG>GAA	p.G40E	CNN1_uc010xmb.1_5'UTR|CNN1_uc010xmc.1_5'UTR	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	40	CH.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						TGGATCGAGGGGGTGACAGGCC	0.609													8	34					0	0	1	0	0
ZNF823	55552	broad.mit.edu	37	19	11832886	11832886	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11832886T>C	uc002msm.2	-	4	1589	c.1463A>G	c.(1462-1464)CAA>CGA	p.Q488R	ZNF823_uc010xmd.1_Missense_Mutation_p.Q306R|ZNF823_uc010dyi.1_Missense_Mutation_p.Q444R	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	488	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CCTTTTATGTTGAGAAAGGTA	0.373										HNSCC(68;0.2)			8	114					0	0	1	0	0
ZNF441	126068	broad.mit.edu	37	19	11891306	11891306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11891306C>T	uc010dyj.2	+	4	861	c.667C>T	c.(667-669)CCA>TCA	p.P223S	ZNF441_uc002msn.3_Missense_Mutation_p.P179S	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGAAGAGAAACCATATGAATA	0.393													3	49					0	0	1	0	0
ZNF441	126068	broad.mit.edu	37	19	11891765	11891765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:11891765C>T	uc010dyj.2	+	4	1320	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S	ZNF441_uc002msn.3_Missense_Mutation_p.P332S	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	376	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTTGATTCTCCCAGTTTATG	0.408													10	140					0	0	1	0	0
ZNF878	729747	broad.mit.edu	37	19	12157500	12157500	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:12157500T>A	uc002mta.1	-	3	220	c.220A>T	c.(220-222)AAT>TAT	p.N74Y		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	27	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CTGTAGAGATTTTTCTGGGAA	0.473													8	159					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12576152	12576152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:12576152G>A	uc002mtv.3	-	4	745	c.584C>T	c.(583-585)CCT>CTT	p.P195L	ZNF709_uc002mtw.3_Missense_Mutation_p.P163L|ZNF709_uc002mtx.3_Missense_Mutation_p.P195L	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACATTCATAAGGTTTCTCTCC	0.408													8	90					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12576270	12576270	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:12576270G>A	uc002mtv.3	-	4	627	c.466C>T	c.(466-468)CGA>TGA	p.R156*	ZNF709_uc002mtw.3_Nonsense_Mutation_p.R124*|ZNF709_uc002mtx.3_Nonsense_Mutation_p.R156*	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	156	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGTATTCGAAATGAACTT	0.353													10	94					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13368211	13368211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:13368211C>T	uc010dze.2	-	28	4782	c.4546G>A	c.(4546-4548)GAG>AAG	p.E1516K	CACNA1A_uc010xnd.1_Missense_Mutation_p.E221K|CACNA1A_uc002mwx.3_Missense_Mutation_p.E221K|CACNA1A_uc010dzc.2_Missense_Mutation_p.E1041K|CACNA1A_uc002mwy.3_Missense_Mutation_p.E1515K|CACNA1A_uc010xne.1_Missense_Mutation_p.E1044K|CACNA1A_uc002mwv.3_Missense_Mutation_p.E32K	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1516	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCCCTTGCTCCTGGAAGGTG	0.453													6	57					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13563791	13563791	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:13563791G>A	uc010dze.2	-	3	674	c.438C>T	c.(436-438)TTC>TTT	p.F146F	CACNA1A_uc002mwy.3_Silent_p.F146F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	146	I.|Helical; Name=S2 of repeat I; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TTCCAGCCTCGAAACAAAAAA	0.483													4	74					0	0	1	0	0
CCDC130	81576	broad.mit.edu	37	19	13873196	13873196	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:13873196C>T	uc002mxb.1	+	10	1160	c.657C>T	c.(655-657)CCC>CCT	p.P219P	CCDC130_uc002mxc.1_Silent_p.P219P|CCDC130_uc002mxd.1_Silent_p.P74P|CCDC130_uc010dzf.1_Silent_p.P113P|MRI1_uc002mxe.2_5'Flank|MRI1_uc002mxf.2_5'Flank	NM_030818	NP_110445	P13994	CC130_HUMAN	coiled-coil domain containing 130	219					response to virus		protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.02e-23)|Epithelial(5;2.58e-18)			CGCTGGTGCCCGAGACGGAAG	0.612													5	57					0	0	1	0	0
PODNL1	79883	broad.mit.edu	37	19	14046553	14046553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:14046553C>T	uc002mxr.2	-	5	770	c.496G>A	c.(496-498)GGG>AGG	p.G166R	PODNL1_uc010xni.1_Missense_Mutation_p.G84R|PODNL1_uc010xnj.1_Missense_Mutation_p.G164R|PODNL1_uc002mxs.2_Intron	NM_024825	NP_079101	Q6PEZ8	PONL1_HUMAN	podocan-like 1 isoform 1	166	Leu-rich.|LRR 4.					proteinaceous extracellular matrix				central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(19;5.26e-23)			GGCTTCTCCCCAAAGGTGAGG	0.622													3	23					0	0	1	0	0
OR7A17	26333	broad.mit.edu	37	19	14991700	14991700	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:14991700G>A	uc010xob.1	-	1	468	c.468C>T	c.(466-468)TCC>TCT	p.S156S		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					TTTGTGACAAGGAATTCAGGG	0.488													11	109					0	0	1	0	0
OR7C2	26658	broad.mit.edu	37	19	15053062	15053062	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15053062C>T	uc010xoc.1	+	1	762	c.762C>T	c.(760-762)GGC>GGT	p.G254G		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					ATGGCACTGGCCTTGGGGTCT	0.537													11	138					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15061159	15061159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15061159C>T	uc002naa.1	-	9	1551	c.1543G>A	c.(1543-1545)GGA>AGA	p.G515R	SLC1A6_uc010dzu.1_Missense_Mutation_p.G437R|SLC1A6_uc010xod.1_Missense_Mutation_p.G451R	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	515					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	ACGGCCGCTCCAATTGAGTCC	0.562													9	90					0	0	1	0	0
CASP14	23581	broad.mit.edu	37	19	15164636	15164636	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15164636G>A	uc010dzv.1	+	4	578	c.270G>A	c.(268-270)GGG>GGA	p.G90G	CASP14_uc002naf.2_Silent_p.G90G	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	90					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						TGGCTCACGGGAGGGAAGGCT	0.557													7	87					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15366243	15366243	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15366243G>A	uc002nar.2	-	10	2134	c.1912C>T	c.(1912-1914)CAG>TAG	p.Q638*	BRD4_uc002nas.2_Nonsense_Mutation_p.Q638*|BRD4_uc002nat.3_Nonsense_Mutation_p.Q638*	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	638					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TCCCGTGACTGGATGATGTGC	0.577			T	NUT|C15orf55	lethal midline carcinoma of young people								5	89					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15378342	15378342	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15378342T>C	uc002nar.2	-	4	666	c.444A>G	c.(442-444)TTA>TTG	p.L148L	BRD4_uc002nas.2_Silent_p.L148L|BRD4_uc002nat.3_Silent_p.L148L|BRD4_uc002nau.3_Silent_p.L148L	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	148					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CTTCTGCCATTAAGACTATGT	0.517			T	NUT|C15orf55	lethal midline carcinoma of young people								10	141					0	0	1	0	0
CYP4F3	4051	broad.mit.edu	37	19	15769333	15769333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15769333C>T	uc002nbj.2	+	11	1332	c.1282C>T	c.(1282-1284)CAT>TAT	p.H428Y	CYP4F3_uc010xok.1_Missense_Mutation_p.H428Y|CYP4F3_uc010xol.1_Missense_Mutation_p.H428Y|CYP4F3_uc010xom.1_Missense_Mutation_p.H279Y|CYP4F3_uc002nbk.2_Missense_Mutation_p.H428Y|CYP4F3_uc010xon.1_Missense_Mutation_p.H138Y	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	428					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TTTTGGAACCCATCACAACCC	0.597													31	347					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15784425	15784425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15784425G>A	uc002nbl.2	+	2	147	c.86G>A	c.(85-87)TGG>TAG	p.W29*	CYP4F12_uc010xoo.1_Nonsense_Mutation_p.W29*|CYP4F12_uc010xop.1_Nonsense_Mutation_p.W29*	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GTGGGCTCCTGGCTACTCGCC	0.627													18	152					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794318	15794318	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15794318T>A	uc002nbl.2	+	7	724	c.663T>A	c.(661-663)TAT>TAA	p.Y221*		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCAGTGAATATATTGCCACCA	0.542													8	101					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794359	15794359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15794359G>A	uc002nbl.2	+	7	765	c.704G>A	c.(703-705)AGA>AAA	p.R235K		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GTAGAGAAAAGAAGCCAGCAT	0.542													8	92					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794487	15794487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15794487C>T	uc002nbl.2	+	7	893	c.832C>T	c.(832-834)CTC>TTC	p.L278F		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GCGTCGCACCCTCCCCACTCA	0.527													14	104					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15852311	15852311	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15852311C>T	uc010xoq.1	+	1	109	c.109C>T	c.(109-111)CTG>TTG	p.L37L		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGATGTTCCTGTTCACATT	0.498													24	222					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15884953	15884953	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:15884953G>A	uc002nbo.2	-	3		c.377C>T			uc010xor.1_Missense_Mutation_p.R37W					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GTCAGCATCCGACGGTGGCGG	0.552													3	21					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16008252	16008252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16008252C>T	uc002nbs.1	-	2	220	c.170G>A	c.(169-171)CGG>CAG	p.R57Q	CYP4F2_uc010xot.1_Intron|CYP4F2_uc010xou.1_5'UTR	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	57					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						AAACCAGTTCCGTCTTGGGGG	0.617													15	163					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025618	16025618	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16025618A>G	uc002nbu.2	-	10	1239	c.1203T>C	c.(1201-1203)TGT>TGC	p.C401C	CYP4F11_uc010eab.1_Silent_p.C401C|CYP4F11_uc002nbt.2_Silent_p.C401C	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	401					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CCTGCGTGCAACATCGGGAGA	0.622													6	144					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16032949	16032949	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16032949G>T	uc002nbu.2	-	9	1049	c.1013C>A	c.(1012-1014)TCC>TAC	p.S338Y	CYP4F11_uc010eab.1_Missense_Mutation_p.S338Y|CYP4F11_uc002nbt.2_Missense_Mutation_p.S338Y	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	338					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TAGGACCCAGGAGAGACCACT	0.542													4	70					0.150653	0.15099	1	1	0
NWD1	284434	broad.mit.edu	37	19	16860664	16860664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16860664C>T	uc002neu.3	+	6	1633	c.1211C>T	c.(1210-1212)GCC>GTC	p.A404V	NWD1_uc002net.3_Missense_Mutation_p.A269V|NWD1_uc002nev.3_Missense_Mutation_p.A198V			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	404	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TTGCCCCCTGCCCAGGTTCTG	0.602													8	97					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16884082	16884082	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16884082C>T	uc002neu.3	+	11	2978	c.2556C>T	c.(2554-2556)TTC>TTT	p.F852F	NWD1_uc002net.3_Silent_p.F717F|NWD1_uc002nev.3_Silent_p.F646F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	852							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TCGGAGGATTCCTCCAGCCCC	0.627													8	56					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16918926	16918926	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:16918926G>A	uc002neu.3	+	18	4688	c.4266G>A	c.(4264-4266)TGG>TGA	p.W1422*	NWD1_uc002net.3_Nonsense_Mutation_p.W1287*|NWD1_uc002nev.3_Nonsense_Mutation_p.W1216*			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1422	WD 12.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CACGCAAGTGGAAATTCGAGA	0.567													4	73					0	0	1	0	0
F2RL3	9002	broad.mit.edu	37	19	17001280	17001280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17001280G>A	uc002nfa.2	+	2	1181	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	336	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						CAGCTGCGTGGATCCCTTCAT	0.657													4	32					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17476201	17476201	+	Missense_Mutation	SNP	C	T	T	rs146532352		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17476201C>T	uc002ngk.1	-	3	1123	c.1073G>A	c.(1072-1074)CGA>CAA	p.R358Q		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	358	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CAGGTTGTCTCGTTCCTTCCG	0.622													8	109					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17476507	17476507	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17476507T>C	uc002ngk.1	-	3	817	c.767A>G	c.(766-768)AAC>AGC	p.N256S		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	256	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						ATGGTAGAGGTTGTAACCCAG	0.612													14	143					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17728519	17728519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17728519G>A	uc002nhd.2	-	40	4814	c.4814C>T	c.(4813-4815)TCG>TTG	p.S1605L		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1517					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						ACCCTGGGCCGATTGCGTCTG	0.622													6	192					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17752357	17752357	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17752357G>A	uc002nhd.2	-	21	2745	c.2745C>T	c.(2743-2745)TTC>TTT	p.F915F		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	827					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCACGAAGTGGAACAGGTTCT	0.552													4	76					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17778931	17778931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:17778931C>T	uc002nhd.2	-	7	727	c.727G>A	c.(727-729)GAT>AAT	p.D243N		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	155					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CTCACTTCATCCTGGTCCCGC	0.522													4	48					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18191740	18191740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18191740C>T	uc002nhw.1	-	4	375	c.311G>A	c.(310-312)GGG>GAG	p.G104E	IL12RB1_uc010xqb.1_Missense_Mutation_p.G104E|IL12RB1_uc002nhx.1_Missense_Mutation_p.G144E|IL12RB1_uc002nhy.2_Missense_Mutation_p.G104E	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	104	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CACAGACACCCCAGCCTGGTC	0.622													11	125					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18192971	18192971	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18192971G>A	uc002nhw.1	-	3	292	c.228C>T	c.(226-228)TTC>TTT	p.F76F	IL12RB1_uc010xqb.1_Silent_p.F76F|IL12RB1_uc002nhx.1_Silent_p.F116F|IL12RB1_uc002nhy.2_Silent_p.F76F	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	76	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						AACACCGCAGGAAGTGGCTGA	0.582													6	47					0	0	1	0	0
MAST3	23031	broad.mit.edu	37	19	18234053	18234054	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18234053_18234054CC>TA	uc002nhz.3	+	6	339_340	c.339_340CC>TA	c.(337-342)CTCCAC>CTTAAC	p.H114N		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	114							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						GGGAACGTCTCCACCAGCTTCC	0.614													7	85					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18376106	18376106	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18376106C>T	uc002nin.2	-	3	2460	c.2244G>A	c.(2242-2244)CCG>CCA	p.P748P	KIAA1683_uc010ebn.2_Silent_p.P748P|KIAA1683_uc010xqe.1_Silent_p.P702P	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	748						mitochondrion				ovary(2)	2						TGTCTGTGATCGGCTGCCCCC	0.607													4	134					0	0	1	0	0
ISYNA1	51477	broad.mit.edu	37	19	18547641	18547641	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18547641C>T	uc002njd.1	-	5	512	c.462G>A	c.(460-462)GCG>GCA	p.A154A	ISYNA1_uc002nja.1_Silent_p.A26A|ISYNA1_uc002njb.1_Silent_p.A4A|ISYNA1_uc002njc.1_Silent_p.A4A|ISYNA1_uc010xqh.1_Intron|ISYNA1_uc002nje.1_Silent_p.A100A|ISYNA1_uc002njf.1_Silent_p.A4A	NM_016368	NP_057452	Q9NPH2	INO1_HUMAN	inositol-3-phosphate synthase 1	154					inositol biosynthetic process|phospholipid biosynthetic process	cytoplasm	binding|inositol-3-phosphate synthase activity			ovary(1)|pancreas(1)	2						CCAGCACCTTCGCGCGCCGCA	0.697													4	20					0	0	1	0	0
CRLF1	9244	broad.mit.edu	37	19	18710616	18710616	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18710616G>A	uc010ebt.1	-	2	350	c.156C>T	c.(154-156)ATC>ATT	p.I52I		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	52	Ig-like C2-type.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						GGGAGGAGCCGATGAGAAGCG	0.672													6	12					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18870933	18870933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18870933C>T	uc002nkb.3	+	8	869	c.781C>T	c.(781-783)CCG>TCG	p.P261S	CRTC1_uc010ebv.2_Missense_Mutation_p.P277S|CRTC1_uc010ebw.2_Missense_Mutation_p.P126S|CRTC1_uc002nkc.3_Missense_Mutation_p.P126S	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	261					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						GCTCCCGACCCCGCTGGACCC	0.692													10	79					0	0	1	0	0
GDF1	2657	broad.mit.edu	37	19	18995068	18995068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:18995068G>A	uc002nki.1	-	3	490	c.418C>T	c.(418-420)CCG>TCG	p.P140S	LASS1_uc002nkj.2_Missense_Mutation_p.P140S|LASS1_uc010ebx.2_Missense_Mutation_p.P42S	NM_021267	NP_067090	P27539	GDF1_HUMAN	LAG1 homolog, ceramide synthase 1 isoform 1	Error:Variant_position_missing_in_P27539_after_alignment					growth	extracellular space	cytokine activity|growth factor activity				0						GCCATGCCCGGCGTCCAGTCT	0.617													3	23					0	0	1	0	0
TMEM161A	54929	broad.mit.edu	37	19	19243266	19243266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19243266G>A	uc002nlg.2	-	5	368	c.338C>T	c.(337-339)TCG>TTG	p.S113L	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Intron|TMEM161A_uc002nli.2_Intron|TMEM161A_uc002nlj.2_5'UTR	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	113	Helical; (Potential).				cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			CACGCCGCCCGAGTACACAGC	0.597													22	184					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19351455	19351455	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19351455C>T	uc002nlz.2	+	12	3552	c.3453C>T	c.(3451-3453)ATC>ATT	p.I1151I	NCAN_uc002nma.2_5'UTR	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1151	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACGACAGGATCGTGGAGAGAG	0.637													8	161					0	0	1	0	0
KIAA0892	23383	broad.mit.edu	37	19	19431801	19431801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19431801C>T	uc002nmk.3	+	1	172	c.133C>T	c.(133-135)CGC>TGC	p.R45C	SF4_uc002nmh.2_5'Flank|SF4_uc002nmi.2_5'Flank|SF4_uc002nmj.2_5'Flank|SF4_uc010xqr.1_5'Flank|SF4_uc010xqs.1_5'Flank	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	45	Sufficient for interaction with NIPBL.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GCCCAAAATCCGCCTGTGCGT	0.542													3	19					0	0	1	0	0
NDUFA13	51079	broad.mit.edu	37	19	19645922	19645922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19645922G>A	uc010xqy.1	+	5	903	c.644G>A	c.(643-645)GGG>GAG	p.G215E	NDUFA13_uc010xqx.1_3'UTR|YJEFN3_uc002nmt.1_Missense_Mutation_p.G133E|YJEFN3_uc010ecf.1_Missense_Mutation_p.G83E|YJEFN3_uc002nmu.1_RNA	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	GGGGCAGTGGGGCTGGTCTGT	0.627													16	150					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19656290	19656290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19656290G>A	uc002nmv.3	+	8	3021	c.2936G>A	c.(2935-2937)CGA>CAA	p.R979Q	CILP2_uc002nmw.3_Missense_Mutation_p.R985Q	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	979						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGGAGTGTGCGAGACCCCGAG	0.677													4	46					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19760601	19760601	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19760601G>A	uc002nnh.3	-	18	2512	c.2484C>T	c.(2482-2484)CTC>CTT	p.L828L	ATP13A1_uc002nne.2_5'UTR|ATP13A1_uc002nnf.3_Silent_p.L196L|ATP13A1_uc002nng.2_Silent_p.L710L	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	828	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						GGATGAGGCGGAGCAGCTGCT	0.687													5	122					0	0	1	0	0
ZNF14	7561	broad.mit.edu	37	19	19822875	19822875	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:19822875G>A	uc002nnk.1	-	4	1369	c.1215C>T	c.(1213-1215)TCC>TCT	p.S405S		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	405	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				GTTCTCGAAGGGAACTTGAAA	0.378													5	77					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20829176	20829176	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:20829176G>A	uc002npb.1	-	2	189	c.39C>T	c.(37-39)TTC>TTT	p.F13F	ZNF626_uc002npc.1_Intron|ZNF626_uc002npd.1_Silent_p.F13F	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCTCCAGAGAGAATTCTATGG	0.423													16	215					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363921	22363921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:22363921C>T	uc002nqs.1	-	3	916	c.598G>A	c.(598-600)GAA>AAA	p.E200K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	200	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CCACATTCTTCACATTTGTAG	0.363													5	76					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940043	22940043	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:22940043T>A	uc010xrh.1	-	6	2288	c.2288A>T	c.(2287-2289)AAA>ATA	p.K763I		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TATCTTATGTTTCCTAAGGGT	0.358													4	39					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941776	22941776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:22941776G>A	uc010xrh.1	-	5	662	c.662C>T	c.(661-663)CCC>CTC	p.P221L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GCATTTGTAGGGTTTCTCTCC	0.368													8	61					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23328734	23328734	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:23328734C>T	uc002nrb.1	+	4		c.1087C>T								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		TTAACCAGTCCTCAAACCTTA	0.348													4	56					0	0	1	0	0
ZNF675	171392	broad.mit.edu	37	19	23836819	23836819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:23836819G>A	uc002nri.2	-	4	1098	c.916C>T	c.(916-918)CAT>TAT	p.H306Y		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	306	C2H2-type 6.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TCTCCAGTATGAATTTTTTTA	0.368													6	67					0	0	1	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010315	24010315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:24010315G>A	uc002nrn.2	+	4	775	c.352G>A	c.(352-354)GAG>AAG	p.E118K		NM_002295	NP_002286			ribosomal protein SA												0						AGCCTTCTGGGAGCCACGGCT	0.562													5	68					0	0	1	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24346135	24346135	+	RNA	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:24346135T>G	uc010edb.1	-	1		c.115A>C				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						AGTGGCAGGGTAGCGTGATAG	0.488													3	9					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935403	30935403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:30935403G>A	uc002nsu.1	+	2	1072	c.934G>A	c.(934-936)GAG>AAG	p.E312K	ZNF536_uc010edd.1_Missense_Mutation_p.E312K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	312	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCTTCGCAGGAGGAGGAGCT	0.642													10	214					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935492	30935492	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:30935492G>A	uc002nsu.1	+	2	1161	c.1023G>A	c.(1021-1023)TCG>TCA	p.S341S	ZNF536_uc010edd.1_Silent_p.S341S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	341					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCGAGCAGTCGGCCAACGAGT	0.647													9	224					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31040114	31040114	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:31040114C>T	uc002nsu.1	+	4	3726	c.3588C>T	c.(3586-3588)GCC>GCT	p.A1196A	ZNF536_uc010edd.1_Silent_p.A1196A	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CACTGTCTGCCCTCAGCAAAG	0.587													9	93					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31040136	31040136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:31040136G>A	uc002nsu.1	+	4	3748	c.3610G>A	c.(3610-3612)GAT>AAT	p.D1204N	ZNF536_uc010edd.1_Missense_Mutation_p.D1204N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CAGCAGCAGCGATGGCGGGGA	0.602													4	81					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33503559	33503559	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:33503559C>T	uc002nuf.2	-	5	528	c.462G>A	c.(460-462)CTG>CTA	p.L154L	RHPN2_uc010xro.1_Silent_p.L3L|RHPN2_uc002nue.2_5'UTR	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	154	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					TTACTTGTCTCAGATCCATAA	0.408													5	83					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263294	34263294	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:34263294G>T	uc002nus.3	+	5	1106	c.601G>T	c.(601-603)GGC>TGC	p.G201C	CHST8_uc002nut.3_Missense_Mutation_p.G201C|CHST8_uc002nuu.2_Missense_Mutation_p.G201C	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	201	PAPS (By similarity).|Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					GCCCAAGGCCGGCTGCTCCAA	0.687													5	65					5.9392e-07	5.99406e-07	1	1	0
ZNF599	148103	broad.mit.edu	37	19	35250983	35250983	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:35250983A>G	uc010edn.1	-	4	1111	c.723T>C	c.(721-723)GAT>GAC	p.D241D	ZNF599_uc010edm.1_Silent_p.D204D	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	241	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			GTCGAATGACATCAGCCATAT	0.483													11	101					0	0	1	0	0
UPK1A	11045	broad.mit.edu	37	19	36168793	36168793	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:36168793G>A	uc002oaw.2	+	6	728	c.728G>A	c.(727-729)TGG>TAG	p.W243*	UPK1A_uc010eeh.2_3'UTR	NM_007000	NP_008931	O00322	UPK1A_HUMAN	uroplakin 1A	243	Helical; (Potential).				epithelial cell differentiation|protein oligomerization	endoplasmic reticulum|integral to membrane	monosaccharide binding|protein homodimerization activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATCCTGATGTGGACGGTGAGA	0.662													5	61					0	0	1	0	0
KIRREL2	84063	broad.mit.edu	37	19	36357116	36357116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:36357116G>A	uc002ocb.3	+	15	2061	c.1849G>A	c.(1849-1851)GAA>AAA	p.E617K	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Missense_Mutation_p.E564K|KIRREL2_uc002ocd.3_Missense_Mutation_p.E579K|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	617	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGCCTTGGCGAAGCCCCTGG	0.607													7	102					0	0	1	0	0
LRFN3	79414	broad.mit.edu	37	19	36431570	36431570	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:36431570T>C	uc002oco.2	+	2	1695	c.1243T>C	c.(1243-1245)TCT>CCT	p.S415P		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	415	Extracellular (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CTCCGCTGCCTCTGCTTCTGC	0.677													8	160					0	0	1	0	0
ZNF566	84924	broad.mit.edu	37	19	36940040	36940040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:36940040G>A	uc002oea.3	-	5	1178	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	ZNF566_uc010xte.1_Missense_Mutation_p.P366S|ZNF566_uc010xtf.1_Missense_Mutation_p.P367S|ZNF566_uc002oeb.3_Missense_Mutation_p.P366S|ZNF566_uc002oec.3_Missense_Mutation_p.P262S|ZNF566_uc010xtg.1_Missense_Mutation_p.P262S	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	366	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					CATTCATAGGGTTTCTCCCCA	0.393													11	53					0	0	1	0	0
ZNF585A	199704	broad.mit.edu	37	19	37644219	37644219	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:37644219G>A	uc002ofo.1	-	5	813	c.582C>T	c.(580-582)TCC>TCT	p.S194S	ZNF585A_uc002ofm.1_Silent_p.S139S|ZNF585A_uc002ofn.1_Silent_p.S139S	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	194	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTTGAAAAAAGGATTTTCCAC	0.403													13	94					0	0	1	0	0
ZNF793	390927	broad.mit.edu	37	19	38027945	38027945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:38027945C>T	uc010efm.2	+	8	827	c.385C>T	c.(385-387)CTT>TTT	p.L129F	ZNF793_uc010xts.1_Missense_Mutation_p.L129F|ZNF793_uc010efo.2_Missense_Mutation_p.L129F	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAGCACTGATCTTTTTTCTTC	0.383													3	27					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38609985	38609985	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:38609985C>T	uc002ohk.2	+	9	2840	c.2331C>T	c.(2329-2331)GGC>GGT	p.G777G		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	777	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CTCCTTTCGGCCCCCCCATCC	0.537													7	152					0	0	1	0	0
PPP1R14A	94274	broad.mit.edu	37	19	38743542	38743542	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:38743542T>G	uc002ohq.2	-	2	467	c.274A>C	c.(274-276)AAA>CAA	p.K92Q	PPP1R14A_uc010efv.2_Intron	NM_033256	NP_150281	Q96A00	PP14A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	92	Inhibitory.				regulation of phosphorylation	cytoplasm	protein binding|protein phosphatase inhibitor activity				0	all_cancers(60;9.57e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			ACCTGGATTTTCCGGCTTCTC	0.453													46	279					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39009955	39009955	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:39009955T>C	uc002oit.2	+	67	10250	c.10120T>C	c.(10120-10122)TCC>CCC	p.S3374P	RYR1_uc002oiu.2_Missense_Mutation_p.S3374P|RYR1_uc002oiv.1_Missense_Mutation_p.S294P|RYR1_uc010xuf.1_Missense_Mutation_p.S294P	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3374					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAAGGTGGTGTCCGAGGAGGA	0.677													4	27					0	0	1	0	0
NCCRP1	342897	broad.mit.edu	37	19	39691306	39691306	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:39691306C>T	uc002okq.1	+	6	757	c.738C>T	c.(736-738)TTC>TTT	p.F246F		NM_001001414	NP_001001414	Q6ZVX7	NCRP1_HUMAN	non-specific cytotoxic cell receptor protein 1	246	FBA.				protein catabolic process					ovary(1)	1						TTATCCACTTCCTGCACAAGG	0.627													42	393					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39905798	39905798	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:39905798G>A	uc010xuz.1	+	3	601	c.276G>A	c.(274-276)GTG>GTA	p.V92V	PLEKHG2_uc010xuy.1_Intron|PLEKHG2_uc002olj.2_Silent_p.V92V|PLEKHG2_uc010xva.1_5'Flank	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	92					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TCTCTCCGGTGGGGATCCCAG	0.672													3	17					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40368830	40368830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:40368830C>T	uc002omp.3	-	28	12526	c.12518G>A	c.(12517-12519)CGG>CAG	p.R4173Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4173	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACTGAAATCCGCCCGTCGGC	0.622													31	327					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40408083	40408083	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:40408083G>A	uc002omp.3	-	9	4646	c.4638C>T	c.(4636-4638)TCC>TCT	p.S1546S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1546	TIL 3.|Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGCAGCCCAGGGAGCAGGTGT	0.652													9	54					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40421187	40421187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:40421187G>A	uc002omp.3	-	5	2742	c.2734C>T	c.(2734-2736)CGG>TGG	p.R912W		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	912	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGGCTGCCCCGATGCTCGTTT	0.692													3	22					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40421295	40421295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:40421295C>T	uc002omp.3	-	5	2634	c.2626G>A	c.(2626-2628)GAC>AAC	p.D876N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	876	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CGCCGGCCGTCGAAGCTCACA	0.677													4	6					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40434009	40434009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:40434009G>A	uc002omp.3	-	2	268	c.260C>T	c.(259-261)TCG>TTG	p.S87L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	87	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GACCATGACCGACTCCCCGGG	0.557													29	144					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41000803	41000803	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41000803G>A	uc002ony.2	+	6	674	c.588_splice	c.e6-1	p.G196_splice	SPTBN4_uc002onx.2_Splice_Site_p.G196_splice|SPTBN4_uc002onz.2_Splice_Site_p.G196_splice	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform						actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			cacccttccAGTTACCCTGAG	0.289													4	60					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41040210	41040210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41040210G>A	uc002ony.2	+	20	4405	c.4319G>A	c.(4318-4320)GGA>GAA	p.G1440E	SPTBN4_uc002onx.2_Missense_Mutation_p.G1440E|SPTBN4_uc002onz.2_Missense_Mutation_p.G1440E|SPTBN4_uc010egx.2_Missense_Mutation_p.G183E|SPTBN4_uc010egy.1_Missense_Mutation_p.G116E|SPTBN4_uc002ooa.2_Missense_Mutation_p.G116E|SPTBN4_uc010egz.1_Missense_Mutation_p.G116E	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1440	Spectrin 12.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GACCCTGGAGGAGACCTGGCC	0.557													4	61					0	0	1	0	0
CYP2A6	1548	broad.mit.edu	37	19	41349794	41349794	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41349794G>A	uc002opl.3	-	9	1413	c.1392C>T	c.(1390-1392)TCC>TCT	p.S464S		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	464					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GTGACTGGGAGGACTTGAGGC	0.567													17	107					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594960	41594960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41594960G>A	uc002opt.2	+	2	316	c.307G>A	c.(307-309)GAG>AAG	p.E103K		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	103					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CGGGCGAGGCGAGCAGGCCAC	0.652													8	51					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622410	41622410	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41622410G>A	uc002opu.1	+	3	278	c.222G>A	c.(220-222)CGG>CGA	p.R74R	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Silent_p.R74R|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	74					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						GACCCAGGCGGGTGGTGGTCC	0.597													13	135					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41626275	41626275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:41626275C>T	uc002opu.1	+	4	414	c.358C>T	c.(358-360)CGA>TGA	p.R120*	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Nonsense_Mutation_p.R120*|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	120					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CAGTGGGGATCGATGGAAGGT	0.562													5	113					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42218945	42218945	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:42218945G>A	uc002ork.2	+	3	601	c.480G>A	c.(478-480)AAG>AAA	p.K160K	CEACAM5_uc010ehz.1_Silent_p.K160K|CEACAM5_uc002orj.1_Silent_p.K160K|CEACAM5_uc002orl.2_Silent_p.K160K	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	160	Ig-like 2.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TGGAGGACAAGGATGCTGTGG	0.567													10	213					0	0	1	0	0
ERF	2077	broad.mit.edu	37	19	42753164	42753164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:42753164G>A	uc002ote.3	-	4	1258	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	ERF_uc002otd.3_Missense_Mutation_p.S98F	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	367	Poly-Ser.				cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				AGAAGAAGAGGATGACGAGGC	0.687													15	89					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411107	43411107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43411107C>T	uc002ovj.1	-	5	1259	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E410K|PSG6_uc002ovi.2_Missense_Mutation_p.E404K|PSG6_uc010xwk.1_Missense_Mutation_p.E243K|PSG11_uc002ovk.1_Missense_Mutation_p.E402K|PSG6_uc002ove.1_Missense_Mutation_p.E193K|PSG6_uc002ovf.1_Missense_Mutation_p.E310K|PSG6_uc002ovg.1_Missense_Mutation_p.E403K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	403	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTGGAGATTTCCTTGCCAGTG	0.448													40	256					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43420351	43420351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43420351G>A	uc002ovj.1	-	2	405	c.353C>T	c.(352-354)TCC>TTC	p.S118F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Missense_Mutation_p.S118F|PSG6_uc002ovg.1_Missense_Mutation_p.S118F	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	118	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TAAGGTGTAGGATCCTGCATC	0.478													15	400					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43433763	43433763	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43433763C>T	uc002ovl.3	-	4	642	c.540G>A	c.(538-540)TGG>TGA	p.W180*	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_Translation_Start_Site|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Nonsense_Mutation_p.W58*	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	180	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CATTCATCCACCACAGGTAGC	0.517													44	285					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43439598	43439598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43439598C>T	uc002ovl.3	-	3	490	c.388G>A	c.(388-390)GGG>AGG	p.G130R	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	130	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CCTCCAGTCCCATCACCTCGC	0.488													63	330					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43708106	43708106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43708106G>A	uc002ovy.2	-	2	464	c.362C>T	c.(361-363)ACC>ATC	p.T121I	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.T121I|PSG4_uc002ovz.2_Missense_Mutation_p.T121I	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	121	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GATGTGTAAGGTGTAGGATCC	0.478													32	257					0	0	1	0	0
LYPD3	27076	broad.mit.edu	37	19	43965868	43965868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:43965868G>A	uc002owl.1	-	5	784	c.676C>T	c.(676-678)CGC>TGC	p.R226C	LYPD3_uc002owm.2_3'UTR	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	226						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				GTCTTGTTGCGGAGGTCAGAG	0.597													7	172					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891416	44891416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:44891416G>A	uc002ozd.3	-	4	1078	c.991C>T	c.(991-993)CTT>TTT	p.L331F	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.L338F	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	331	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TGGTTGTGAAGGGAAGAGCTG	0.478													4	72					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44892239	44892239	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:44892239C>T	uc002ozd.3	-	4	255	c.168G>A	c.(166-168)TTG>TTA	p.L56L	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.L63L	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	56	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CCTGAAGATTCAAAATGTTGT	0.393													5	77					0	0	1	0	0
TOMM40	10452	broad.mit.edu	37	19	45404058	45404058	+	Missense_Mutation	SNP	C	T	T	rs142412517	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:45404058C>T	uc002ozx.3	+	7	816	c.715C>T	c.(715-717)CGG>TGG	p.R239W	TOMM40_uc002ozy.3_Missense_Mutation_p.R239W|TOMM40_uc002paa.3_Missense_Mutation_p.R239W|TOMM40_uc002ozz.2_Missense_Mutation_p.R239W	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	239					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		GGTCTACCACCGGCGGCCTGG	0.438													8	72					0	0	1	0	0
APOC4	346	broad.mit.edu	37	19	45448490	45448490	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:45448490C>T	uc002pag.1	+	3	352	c.312C>T	c.(310-312)TCC>TCT	p.S104S	APOC2_uc002pah.2_5'Flank	NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	104					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		TCCTCGAATCCAAAGACAGCC	0.522													52	356					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094974	46094974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:46094974C>T	uc002pcm.2	-	2	1096	c.151G>A	c.(151-153)GAG>AAG	p.E51K	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	51	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		ACGCCCAGCTCGTTGCGCTGT	0.617													19	71					0	0	1	0	0
QPCTL	54814	broad.mit.edu	37	19	46202120	46202120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:46202120C>T	uc010xxr.1	+	5	1069	c.848C>T	c.(847-849)CCT>CTT	p.P283L	QPCTL_uc010ekn.2_Missense_Mutation_p.P189L	NM_017659	NP_060129	Q9NXS2	QPCTL_HUMAN	glutaminyl-peptide cyclotransferase-like isoform	283					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	Golgi membrane|integral to membrane	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|protein binding|zinc ion binding			skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0059)|GBM - Glioblastoma multiforme(486;0.0882)|Epithelial(262;0.208)		AGCCACTTCCCTCGCACGGTC	0.622													19	140					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307918	46307919	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:46307918_46307919GG>AA	uc002pdm.2	-	3	1387_1388	c.1244_1245CC>TT	c.(1243-1245)CCC>CTT	p.P415L	RSPH6A_uc002pdl.2_Missense_Mutation_p.P151L	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	415						intracellular				ovary(1)|central_nervous_system(1)	2						TCTCCTCCTTGGGGATCACGGG	0.5													11	66					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46815879	46815879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:46815879G>A	uc002peh.2	+	8	1023	c.994G>A	c.(994-996)GAG>AAG	p.E332K	HIF3A_uc002pef.1_3'UTR|HIF3A_uc002peg.3_Missense_Mutation_p.E332K|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.E276K|HIF3A_uc002pej.1_Missense_Mutation_p.E263K|HIF3A_uc002pek.2_Missense_Mutation_p.E276K|HIF3A_uc010xxy.1_Missense_Mutation_p.E263K|HIF3A_uc002pel.2_Missense_Mutation_p.E330K|HIF3A_uc010xxz.1_Missense_Mutation_p.E281K	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	332					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCCCCAGTCGGAGAGTATCGT	0.582													9	128					0	0	1	0	0
PTGIR	5739	broad.mit.edu	37	19	47124666	47124666	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:47124666C>T	uc002pex.2	-	3	1145	c.1032G>A	c.(1030-1032)GGG>GGA	p.G344G		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	344	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	GCACGCAGCTCCCCTCCTTTC	0.692													3	19					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47422257	47422257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:47422257C>T	uc010ekv.2	+	1	325	c.325C>T	c.(325-327)CGA>TGA	p.R109*		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	109					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		TCAACCTCATCGAAGCACGGC	0.498													11	134					0	0	1	0	0
GPR77	27202	broad.mit.edu	37	19	47844845	47844845	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:47844845C>T	uc010ela.1	+	2	1007	c.789C>T	c.(787-789)TCC>TCT	p.S263S	GPR77_uc002pgk.1_Silent_p.S263S	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	263	Extracellular (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		CCCCGAACTCCGCACTCCTGG	0.657													7	78					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47865836	47865836	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:47865836C>T	uc010xyn.1	+	6	1820	c.1479C>T	c.(1477-1479)GGC>GGT	p.G493G	DHX34_uc010elc.1_Silent_p.G408G	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	493	Helicase C-terminal.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GCCGGGCGGGCCGCACGGGCC	0.647													7	27					0	0	1	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48601485	48601485	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:48601485T>C	uc002phx.2	-	6	877	c.479A>G	c.(478-480)AAG>AGG	p.K160R	PLA2G4C_uc002phw.2_Missense_Mutation_p.K95R|PLA2G4C_uc010elr.2_Missense_Mutation_p.K160R|PLA2G4C_uc010xzd.1_Missense_Mutation_p.K170R|PLA2G4C_uc002phy.3_Missense_Mutation_p.K160R	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	160	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		TTCCACGGGCTTCTTCATATT	0.537													17	67					0	0	1	0	0
GRIN2D	2906	broad.mit.edu	37	19	48918289	48918289	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:48918289G>A	uc002pjc.3	+	6	1669	c.1581G>A	c.(1579-1581)GAG>GAA	p.E527E		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	527	Extracellular (Potential).		E -> G (in a breast cancer sample; somatic mutation).			cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding	p.E527G(1)		ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	TGATCGGGGAGGTGAGGGGGC	0.502													10	95					0	0	1	0	0
IZUMO1	284359	broad.mit.edu	37	19	49248969	49248969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:49248969G>A	uc002pkj.2	-	2	696	c.148C>T	c.(148-150)CAC>TAC	p.H50Y	IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	50	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		ATGGCTTTGTGATGCTTCGCA	0.547													10	141					0	0	1	0	0
FGF21	26291	broad.mit.edu	37	19	49261190	49261190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:49261190C>T	uc002pkn.1	+	4	915	c.343C>T	c.(343-345)CAC>TAC	p.H115Y	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.H115Y	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	115					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCCCTAGCTCCACTTTGACCC	0.438													30	419					0	0	1	0	0
HSD17B14	51171	broad.mit.edu	37	19	49318379	49318379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:49318379C>T	uc002pkv.1	-	6	655	c.389G>A	c.(388-390)CGG>CAG	p.R130Q	HSD17B14_uc010emk.1_Missense_Mutation_p.R130Q	NM_016246	NP_057330	Q9BPX1	DHB14_HUMAN	dehydrogenase/reductase (SDR family) member 10	130					steroid catabolic process	centrosome|cytosol	estradiol 17-beta-dehydrogenase activity|protein binding|testosterone 17-beta-dehydrogenase (NADP+) activity				0		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000341)|all cancers(93;0.000764)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.0346)		TTGACTCTTCCGCAGGTAGGG	0.582													13	77					0	0	1	0	0
PPFIA3	8541	broad.mit.edu	37	19	49633325	49633325	+	Splice_Site	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:49633325G>T	uc002pmr.2	+	6	989	c.657_splice	c.e6+1	p.Q219_splice	PPFIA3_uc010yai.1_Splice_Site|PPFIA3_uc010emt.2_Splice_Site_p.Q143_splice|PPFIA3_uc010yaj.1_Splice_Site|PPFIA3_uc002pms.2_Splice_Site_p.Q87_splice	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3							cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		GGATGGGCAGGTGAGACATGG	0.547													10	75					0.00244969	0.00246065	1	1	0
ALDH16A1	126133	broad.mit.edu	37	19	49973716	49973716	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:49973716G>C	uc002pnt.2	+	17	2517	c.2401G>C	c.(2401-2403)GGG>CGG	p.G801R	ALDH16A1_uc010yar.1_Missense_Mutation_p.G750R|ALDH16A1_uc010yas.1_Missense_Mutation_p.G636R|ALDH16A1_uc010yat.1_Missense_Mutation_p.G638R	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	801							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		GCTGCCTATGGGGGACTGATG	0.672													3	10					0	0	1	0	0
VRK3	51231	broad.mit.edu	37	19	50492968	50492968	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:50492968A>G	uc002prg.2	-	11	1122	c.1024T>C	c.(1024-1026)TAC>CAC	p.Y342H	VRK3_uc002prh.1_Missense_Mutation_p.Y342H|VRK3_uc002pri.1_Missense_Mutation_p.Y292H|VRK3_uc010ens.2_Missense_Mutation_p.Y342H|VRK3_uc010ybl.1_Missense_Mutation_p.Y292H|VRK3_uc010ybm.1_Missense_Mutation_p.Y111H|VRK3_uc002prj.1_Missense_Mutation_p.Y292H|VRK3_uc002prk.1_Missense_Mutation_p.Y342H|VRK3_uc010ent.1_Missense_Mutation_p.Y98H|VRK3_uc002prl.2_Missense_Mutation_p.Y342H|VRK3_uc010ybn.1_3'UTR	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	342	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		CCTTCCACGTAGGCCACGTGT	0.577													8	34					0	0	1	0	0
KLK9	284366	broad.mit.edu	37	19	51509906	51509906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:51509906C>T	uc002pux.1	-	3	361	c.274G>A	c.(274-276)GAC>AAC	p.D92N	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Missense_Mutation_p.D63N|KLK9_uc002puv.1_5'Flank	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	92	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		GGGAAGAAGTCCGTAACCCGG	0.602													13	57					0	0	1	0	0
KLK13	26085	broad.mit.edu	37	19	51563860	51563860	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:51563860A>G	uc002pvn.2	-	2	112	c.69T>C	c.(67-69)TCT>TCC	p.S23S	KLK13_uc002pvl.2_RNA|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_RNA|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Silent_p.S23S|KLK13_uc002pvq.2_RNA|KLK13_uc010eoo.2_Intron|KLK13_uc002pvr.2_Silent_p.S23S	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	23					proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		GAACCTTGGAAGACTCCTGGG	0.562													10	134					0	0	1	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51631717	51631718	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:51631717_51631718GG>AA	uc002pvu.2	+	6	1220_1221	c.1153_1154GG>AA	c.(1153-1155)GGA>AAA	p.G385K	SIGLEC9_uc010yct.1_Missense_Mutation_p.G385K	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	385	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		AGCGGGCGTGGGAGATACGGGC	0.589													14	130					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51649195	51649195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:51649195C>T	uc002pvv.1	+	4	913	c.844C>T	c.(844-846)CCC>TCC	p.P282S	SIGLEC7_uc002pvw.1_Missense_Mutation_p.P189S|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	282	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		TGACAGCAATCCCCCTGCCAG	0.572													32	181					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52000608	52000608	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:52000608G>A	uc002pwx.1	-	6	1553	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SIGLEC12_uc002pww.1_Silent_p.F381F|SIGLEC12_uc010eoy.1_Silent_p.F226F	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	499	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CTCACACAACGAAGATGATGC	0.572													12	135					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033046	52033046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:52033046C>T	uc002pwy.2	-	5	1106	c.944G>A	c.(943-945)GGA>GAA	p.G315E	SIGLEC6_uc002pwz.2_Missense_Mutation_p.G299E|SIGLEC6_uc002pxa.2_Missense_Mutation_p.G315E|SIGLEC6_uc010ydb.1_Missense_Mutation_p.G252E|SIGLEC6_uc010ydc.1_Missense_Mutation_p.G315E|SIGLEC6_uc010eoz.1_Missense_Mutation_p.G293E|SIGLEC6_uc010epb.1_Missense_Mutation_p.G268E|SIGLEC6_uc010epa.1_Missense_Mutation_p.G304E	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	315	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GGTGAAATCTCCTTCTTCTGC	0.602													6	47					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52132750	52132750	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:52132750G>A	uc002pxe.2	-	3	700	c.561C>T	c.(559-561)CCC>CCT	p.P187P		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	187	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CGGGGTCCAGGGGGCTGAGGG	0.657													3	13					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272349	52272349	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:52272349C>T	uc002pxr.2	+	2	483	c.438C>T	c.(436-438)ATC>ATT	p.I146I	FPR2_uc002pxs.3_Silent_p.I146I|FPR2_uc010epf.2_Silent_p.I146I	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	146	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGAAGGTGATCGTCGGACCTT	0.478													10	77					0	0	1	0	0
ZNF766	90321	broad.mit.edu	37	19	52785427	52785427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:52785427C>T	uc002pyr.1	+	2	125	c.82C>T	c.(82-84)CCT>TCT	p.P28S	ZNF766_uc002pys.1_Missense_Mutation_p.P28S|ZNF766_uc002pyt.1_Missense_Mutation_p.P43S	NM_001010851	NP_001010851	Q5HY98	ZN766_HUMAN	zinc finger protein 766	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00236)|OV - Ovarian serous cystadenocarcinoma(262;0.00871)		ATGCCTGGACCCTGTGCAGAA	0.493													14	256					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53014061	53014061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:53014061G>A	uc002pzp.3	+	6	671	c.427G>A	c.(427-429)GAT>AAT	p.D143N		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGACCGACATGATCAAAGGCA	0.393													10	218					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53015056	53015056	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:53015056G>A	uc002pzp.3	+	6	1666	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	249	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGAGACACAAGATAATTCATA	0.408													15	67					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53057081	53057081	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:53057081C>T	uc010epq.1	+	5	1089	c.912C>T	c.(910-912)TGC>TGT	p.C304C	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	304	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CCCTTACATGCCATCATAGAC	0.403													22	176					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53958228	53958228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:53958228C>T	uc010eqp.2	+	7	925	c.467C>T	c.(466-468)ACC>ATC	p.T156I	ZNF761_uc010ydy.1_Missense_Mutation_p.T102I|ZNF761_uc002qbt.1_Missense_Mutation_p.T102I	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	156					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ATATTTCAGACCGAAGAGAAA	0.393													5	136					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53958983	53958983	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:53958983A>C	uc010eqp.2	+	7	1680	c.1222A>C	c.(1222-1224)AAA>CAA	p.K408Q	ZNF761_uc010ydy.1_Missense_Mutation_p.K354Q|ZNF761_uc002qbt.1_Missense_Mutation_p.K354Q	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TACTGGAGAGAAACCTTACAA	0.368													4	223					0	0	1	0	0
MIR526A1	574475	broad.mit.edu	37	19	54209529	54209529	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54209529G>A	hsa-mir-526a-1|MI0003157	+			c.24G>A			MIR520C_hsa-mir-520c|MI0003158_5'Flank|MIR518C_hsa-mir-518c|MI0003159_5'Flank																	0						CCTCTAGAGGGAAGCACTTTC	0.408													12	120					0	0	1	0	0
MIR517B	574483	broad.mit.edu	37	19	54224369	54224369	+	RNA	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54224369A>G	hsa-mir-517b|MI0003165	+			c.40A>G			MIR520G_hsa-mir-520g|MI0003166_5'Flank																	0						TGTCTAAGAAAAGATCGTGCA	0.388													26	190					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54395022	54395022	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54395022G>A	uc002qcq.1	+	6	906	c.624G>A	c.(622-624)ACG>ACA	p.T208T	PRKCG_uc010eqz.1_Silent_p.T208T|PRKCG_uc010yef.1_Silent_p.T208T|PRKCG_uc010yeg.1_Silent_p.T208T|PRKCG_uc010yeh.1_Silent_p.T95T	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	208	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding	p.T208T(1)		lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GGAACCTGACGAAACAGAAGA	0.522													4	102					0	0	1	0	0
CACNG7	59284	broad.mit.edu	37	19	54417818	54417818	+	Silent	SNP	G	A	A	rs149797266		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54417818G>A	uc002qcr.1	+	2	276	c.261G>A	c.(259-261)ACG>ACA	p.T87T	CACNG7_uc010era.1_Silent_p.T87T	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	87					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		ATTTGGTGACGGAAAACACGG	0.552													8	85					0	0	1	0	0
CACNG6	59285	broad.mit.edu	37	19	54515271	54515271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54515271G>A	uc002qct.2	+	4	1201	c.611G>A	c.(610-612)AGC>AAC	p.S204N	CACNG6_uc002qcu.2_Missense_Mutation_p.S158N|CACNG6_uc002qcv.2_Missense_Mutation_p.S133N	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	204						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		CAGAGAGTCAGCCCGGAGCCT	0.706													18	75					0	0	1	0	0
OSCAR	126014	broad.mit.edu	37	19	54600332	54600332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54600332G>A	uc002qdd.2	-	4	382	c.265C>T	c.(265-267)CTT>TTT	p.L89F	OSCAR_uc002qcy.2_Missense_Mutation_p.L68F|OSCAR_uc002qcz.2_Missense_Mutation_p.L64F|OSCAR_uc002qda.2_Missense_Mutation_p.L68F|OSCAR_uc002qdb.2_Missense_Mutation_p.L53F|OSCAR_uc010erc.2_Missense_Mutation_p.T31I|OSCAR_uc002qdc.2_Missense_Mutation_p.L78F	NM_206818	NP_996554	Q8IYS5	OSCAR_HUMAN	osteoclast-associated receptor isoform 1	64	Ig-like 1.					extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)					GGCTTGAAAAGTCCAAATCTC	0.592													12	138					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54759173	54759173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54759173C>T	uc002qex.2	-	5	1039	c.928G>A	c.(928-930)GAC>AAC	p.D310N	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.D301N|LILRB5_uc002qey.2_Missense_Mutation_p.D310N|LILRB5_uc002qez.2_Missense_Mutation_p.D210N|LILRB5_uc002qfa.1_Missense_Mutation_p.D200N|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	310	Ig-like C2-type 3.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCCAGGGGGTCGCTGGGGGCC	0.667													12	73					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803035	54803035	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54803035G>A	uc002qfd.2	-	4	707	c.642C>T	c.(640-642)CTC>CTT	p.L214L	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	214	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGAGCCCCAGGAGATCACTGG	0.617													25	140					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872598	54872598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54872598C>T	uc002qfk.1	-	3	599	c.289G>A	c.(289-291)GGG>AGG	p.G97R	LAIR1_uc002qfl.1_Missense_Mutation_p.G97R|LAIR1_uc002qfm.1_Missense_Mutation_p.G96R|LAIR1_uc002qfn.1_Missense_Mutation_p.G96R|LAIR1_uc010yex.1_Missense_Mutation_p.G90R|LAIR1_uc002qfo.2_Missense_Mutation_p.G79R	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	97	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		CGATAAGGCCCGGCATTTCCT	0.507													10	217					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872707	54872707	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54872707C>T	uc002qfk.1	-	3	490	c.180G>A	c.(178-180)CTG>CTA	p.L60L	LAIR1_uc002qfl.1_Silent_p.L60L|LAIR1_uc002qfm.1_Silent_p.L59L|LAIR1_uc002qfn.1_Silent_p.L59L|LAIR1_uc010yex.1_Silent_p.L53L|LAIR1_uc002qfo.2_Silent_p.L42L	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	60	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TCTCCCTCTCCAGGCGGAATG	0.557													31	181					0	0	1	0	0
LENG9	94059	broad.mit.edu	37	19	54973884	54973884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:54973884C>T	uc010yez.1	-	1	1011	c.892G>A	c.(892-894)GGT>AGT	p.G298S		NM_198988	NP_945339	Q96B70	LENG9_HUMAN	leukocyte receptor cluster (LRC) member 9	298					RNA metabolic process	intracellular	catalytic activity|nucleic acid binding|zinc ion binding				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.134)		GCCGCAGGACCCCACTCGGCT	0.667													3	42					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106763	55106764	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55106763_55106764CC>TT	uc002qgh.1	+	5	739_740	c.557_558CC>TT	c.(556-558)CCC>CTT	p.P186L	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.P186L	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	186	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TCTGTGGGCCCCGTGAGCCCGA	0.574													14	175					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55175228	55175228	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55175228C>T	uc002qgp.2	+	3	449	c.87C>T	c.(85-87)CCC>CCT	p.P29P	LILRB4_uc002qgo.1_Silent_p.P70P|LILRB4_uc002qgq.2_Silent_p.P29P|LILRB4_uc010ers.1_Intron|LILRB4_uc002qgr.2_Silent_p.P70P|LILRB4_uc010ert.2_Silent_p.P70P|LILRB4_uc010eru.2_Silent_p.P58P	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	29	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TCCCCAAACCCACCCTCTGGG	0.622													10	94					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179430	55179430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55179430C>T	uc002qgp.2	+	12	1669	c.1307C>T	c.(1306-1308)CCA>CTA	p.P436L	LILRB4_uc002qgq.2_Missense_Mutation_p.P435L|LILRB4_uc002qgr.2_Missense_Mutation_p.P478L|LILRB4_uc010ert.2_Missense_Mutation_p.P477L|LILRB4_uc010eru.2_Missense_Mutation_p.P466L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	436	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GGGGCCTCTCCAGCTGAGCCC	0.607													14	122					0	0	1	0	0
KIR3DP1	768329	broad.mit.edu	37	19	55301616	55301616	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55301616G>C	uc010yfi.1	+	5	796	c.795G>C	c.(793-795)AGG>AGC	p.R265S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Intron	NM_001015070	NP_001015070			killer-cell Ig-like receptor												0				GBM - Glioblastoma multiforme(193;0.0192)		ATGAACTTAGGTTCCCTGCAG	0.577													7	35					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55340883	55340883	+	Silent	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55340883C>A	uc002qhk.3	+	7	1131	c.1068C>A	c.(1066-1068)CTC>CTA	p.L356L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.L281L|KIR3DL1_uc010esf.2_Silent_p.L261L|KIR3DL1_uc010yfo.1_Silent_p.L298L|KIR3DL1_uc002qhl.3_Intron	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	356	Helical; (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		tcctcctcctcttctttctcc	0.423													11	87					0.00010058	0.000101231	1	1	0
KIR3DL1	3811	broad.mit.edu	37	19	55377861	55377861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55377861G>A	uc002qhl.3	+	8	1205	c.1142G>A	c.(1141-1143)AGA>AAA	p.R381K	KIR3DL2_uc010esh.2_Missense_Mutation_p.R364K|KIR3DL2_uc002qho.3_Missense_Mutation_p.R381K			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	381	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		GCGGGGGACAGAACAGTGAAT	0.542													18	136					0	0	1	0	0
FCAR	2204	broad.mit.edu	37	19	55401049	55401049	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55401049G>A	uc002qhr.1	+	5	881	c.684G>A	c.(682-684)TTG>TTA	p.L228L	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.L179L|FCAR_uc010esi.1_Silent_p.L105L|FCAR_uc002qhu.1_Silent_p.L132L|FCAR_uc002qhv.1_Silent_p.L206L|FCAR_uc002qhw.1_Silent_p.L216L|FCAR_uc002qhx.1_Silent_p.L120L|FCAR_uc002qhy.1_Silent_p.L194L|FCAR_uc002qhz.1_Missense_Mutation_p.D192N|FCAR_uc002qia.1_Silent_p.L119L	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	228	Helical; (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CGCAGAACTTGATCCGCATGG	0.537													31	681					0	0	1	0	0
NCR1	9437	broad.mit.edu	37	19	55423579	55423579	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55423579C>T	uc002qib.2	+	6	764	c.726C>T	c.(724-726)CTC>CTT	p.L242L	NCR1_uc002qic.2_Silent_p.L241L|NCR1_uc002qie.2_Intron|NCR1_uc002qid.2_Silent_p.L147L|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Silent_p.L135L	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	242	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		AGACGGGACTCCAGAAAGGTA	0.517													24	136					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55447703	55447703	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55447703G>A	uc002qih.3	-	6	2302	c.2226C>T	c.(2224-2226)ATC>ATT	p.I742I	NLRP7_uc002qig.3_Silent_p.I714I|NLRP7_uc002qii.3_Silent_p.I742I|NLRP7_uc010esk.2_Silent_p.I742I|NLRP7_uc010esl.2_Silent_p.I770I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	742							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTTCCCACTCGATGTGCCCTG	0.552													3	42					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55711726	55711726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55711726C>T	uc002qjq.2	-	7	1371	c.1298G>A	c.(1297-1299)CGA>CAA	p.R433Q	PTPRH_uc010esv.2_Missense_Mutation_p.R255Q|PTPRH_uc002qjs.2_Missense_Mutation_p.R440Q	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	433	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TGTTGTGTTTCGGGTCTCTGT	0.542													21	157					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55798596	55798596	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:55798596C>T	uc002qkg.2	+	3	523	c.246C>T	c.(244-246)ATC>ATT	p.I82I	BRSK1_uc002qkf.2_Silent_p.I98I	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	82	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		AGCGGGAGATCGCCATCCTGA	0.607													11	205					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320319	56320319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56320319G>A	uc010ygf.1	-	5	2368	c.1657C>T	c.(1657-1659)CGG>TGG	p.R553W	NLRP11_uc002qlz.2_Missense_Mutation_p.R454W|NLRP11_uc002qmb.2_Missense_Mutation_p.R454W|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	553							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TCTTCTTCCCGATTCTCATAG	0.433													11	87					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56530724	56530724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56530724G>A	uc002qmj.2	+	5	582	c.582G>A	c.(580-582)ATG>ATA	p.M194I	NLRP5_uc002qmi.2_Intron	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	194						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CACAAGCTATGGAACAAGAAG	0.408													9	51					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539700	56539700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56539700C>T	uc002qmj.2	+	7	2101	c.2101C>T	c.(2101-2103)CGC>TGC	p.R701C	NLRP5_uc002qmi.2_Missense_Mutation_p.R682C	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	701						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGAGTTTGTTCGCTTGGCATT	0.517													22	133					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56549468	56549468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56549468C>T	uc002qmj.2	+	10	2693	c.2693C>T	c.(2692-2694)TCT>TTT	p.S898F	NLRP5_uc002qmi.2_Missense_Mutation_p.S879F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	898	LRR 7.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGCCTGAAATCTCTGAGCCTG	0.547													9	75					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701903	56701903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56701903C>T	uc010ygh.1	-	4	781	c.781G>A	c.(781-783)GCC>ACC	p.A261T		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	261					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCCACAGAGGCTCTTTTCTGG	0.493													11	98					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56703300	56703300	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56703300C>T	uc010ygh.1	-	2	507	c.507G>A	c.(505-507)GTG>GTA	p.V169V		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	169					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCATCTGGTTCACAGAGGAGG	0.602													9	64					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56953378	56953379	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56953378_56953379GG>AA	uc002qnd.2	-	5	1147_1148	c.985_986CC>TT	c.(985-987)CCT>TTT	p.P329F	ZNF667_uc010etl.2_Missense_Mutation_p.P111F|ZNF667_uc002qne.2_Missense_Mutation_p.P329F|ZNF667_uc010etm.2_Missense_Mutation_p.P272F	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	329					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GCATTTAAAAGGATTCTCTAAA	0.366													4	96					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56953700	56953700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:56953700G>A	uc002qnd.2	-	5	826	c.664C>T	c.(664-666)CAT>TAT	p.H222Y	ZNF667_uc010etl.2_Missense_Mutation_p.H4Y|ZNF667_uc002qne.2_Missense_Mutation_p.H222Y|ZNF667_uc010etm.2_Missense_Mutation_p.H165Y	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	222	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TTTCCATCATGAATTCTCATA	0.378													9	73					0	0	1	0	0
ZNF470	388566	broad.mit.edu	37	19	57088404	57088404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57088404C>T	uc002qnl.3	+	6	1283	c.607C>T	c.(607-609)CAT>TAT	p.H203Y	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		ATTTAATTTTCATACAGATAA	0.289													6	32					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176164	57176164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57176164C>T	uc010ygo.1	-	2	469	c.469G>A	c.(469-471)GAG>AAG	p.E157K	ZNF835_uc010ygn.1_Missense_Mutation_p.E135K	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						AATGGCTTCTCCCCGGTGTGG	0.632													19	112					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57176372	57176372	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57176372C>T	uc010ygo.1	-	2	261	c.261G>A	c.(259-261)TCG>TCA	p.S87S	ZNF835_uc010ygn.1_Silent_p.S65S	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CAGCAGGGCTCGATATGGTTC	0.637													4	47					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325217	57325217	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57325217G>A	uc002qnu.2	-	7	4944	c.4593C>T	c.(4591-4593)ATC>ATT	p.I1531I	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.I1502I|PEG3_uc002qnv.2_Silent_p.I1531I|PEG3_uc002qnw.2_Silent_p.I1407I|PEG3_uc002qnx.2_Silent_p.I1405I|PEG3_uc010etr.2_Silent_p.I1531I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1531					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GCTCAAATATGATCATGCTGG	0.478													6	81					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325937	57325937	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57325937G>A	uc002qnu.2	-	7	4224	c.3873C>T	c.(3871-3873)TTC>TTT	p.F1291F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.F1262F|PEG3_uc002qnv.2_Silent_p.F1291F|PEG3_uc002qnw.2_Silent_p.F1167F|PEG3_uc002qnx.2_Silent_p.F1165F|PEG3_uc010etr.2_Silent_p.F1291F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1291	C2H2-type 9.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CTGGGTTGACGAAAGATTCTC	0.478													9	49					0	0	1	0	0
ZNF548	147694	broad.mit.edu	37	19	57910946	57910946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:57910946C>T	uc002qom.2	+	3	1541	c.1291C>T	c.(1291-1293)CGT>TGT	p.R431C	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.R434C	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	431	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAAATTCTTTCGTTACAACTC	0.463													5	66					0	0	1	0	0
ZNF551	90233	broad.mit.edu	37	19	58198992	58198992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:58198992G>A	uc002qpw.3	+	3	1524	c.1301G>A	c.(1300-1302)AGA>AAA	p.R434K	ZNF551_uc002qpv.3_Missense_Mutation_p.R377K|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	450	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TATGAATGCAGAGAATGTGGG	0.428													20	118					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58551861	58551861	+	Silent	SNP	C	T	T	rs147151087		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:58551861C>T	uc002qrc.1	+	4	661	c.414C>T	c.(412-414)TTC>TTT	p.F138F		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	138					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		ACTGGAGTTTCGGTGAGGAGG	0.612													14	230					0	0	1	0	0
ZNF274	10782	broad.mit.edu	37	19	58723828	58723828	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:58723828C>T	uc002qrq.1	+	10	1740	c.1281C>T	c.(1279-1281)TCC>TCT	p.S427S	ZNF274_uc002qrr.1_Silent_p.S395S|ZNF274_uc002qrs.1_Silent_p.S322S|ZNF274_uc010eum.1_Silent_p.S186S	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	427					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		ACCCTGAGTCCCAGGCAAACA	0.458													4	90					0	0	1	0	0
ZNF324B	388569	broad.mit.edu	37	19	58967013	58967013	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr19:58967013C>T	uc002qsv.1	+	4	809	c.702C>T	c.(700-702)CTC>CTT	p.L234L	ZNF324B_uc002qsu.1_Silent_p.L224L|ZNF324B_uc010euq.1_Silent_p.L234L	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CTCATAGACTCCTCGGTGGCC	0.642													3	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	905334	905334	+	RNA	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:905334A>T	uc010ewg.2	-	1		c.249T>A			uc010ewh.1_Silent_p.I204I					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		CAAATCCAGAAATTTCACAAA	0.512													13	107					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1499825	1499825	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:1499825C>A	uc002qww.2	+	12	2162	c.2071C>A	c.(2071-2073)CTG>ATG	p.L691M	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.L634M|TPO_uc002qwr.2_Missense_Mutation_p.L691M|TPO_uc002qwx.2_Missense_Mutation_p.L634M|TPO_uc010yio.1_Missense_Mutation_p.L518M|TPO_uc010yip.1_Missense_Mutation_p.L691M|TPO_uc002qwy.1_Missense_Mutation_p.L31M|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	691	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GAAGCACTCCCTGTCTCGGGT	0.552													5	43					2.7689e-08	2.79726e-08	1	1	0
TPO	7173	broad.mit.edu	37	2	1520736	1520736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:1520736C>T	uc002qww.2	+	15	2691	c.2600C>T	c.(2599-2601)TCG>TTG	p.S867L	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.S810L|TPO_uc002qwr.2_Missense_Mutation_p.S867L|TPO_uc002qwx.2_Missense_Mutation_p.S810L|TPO_uc010yio.1_Missense_Mutation_p.S694L|TPO_uc010yip.1_Missense_Mutation_p.S823L|TPO_uc002qwy.1_Missense_Mutation_p.S163L|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	867	Helical; (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity	p.S867S(1)		ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGTCTCACCTCGACGGTGATT	0.537													4	37					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1667458	1667458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:1667458C>T	uc002qxa.2	-	12	1550	c.1486G>A	c.(1486-1488)GAC>AAC	p.D496N	PXDN_uc002qxb.1_Missense_Mutation_p.D496N	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	496	Ig-like C2-type 3.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGGCCCTGGTCGTGGAGGGCA	0.622													16	144					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1893202	1893202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:1893202C>T	uc002qxe.2	-	16	3158	c.2331G>A	c.(2329-2331)ATG>ATA	p.M777I	MYT1L_uc002qxd.2_Missense_Mutation_p.M775I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	777					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCTGCTTGTTCATGCTGAGGT	0.597													11	81					0	0	1	0	0
KCNF1	3754	broad.mit.edu	37	2	11053302	11053302	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:11053302C>T	uc002rax.2	+	1	1240	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	250	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		AGCTGCACTTCGCGCTGTCCT	0.612													4	130					0	0	1	0	0
C2orf50	130813	broad.mit.edu	37	2	11280648	11280648	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:11280648G>A	uc010yji.1	+	2	552	c.270G>A	c.(268-270)TGG>TGA	p.W90*	C2orf50_uc010yjj.1_Nonsense_Mutation_p.W90*	NM_182500	NP_872306	Q96LR7	CB050_HUMAN	hypothetical protein LOC130813	90											0	all_hematologic(175;0.0797)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.0997)|OV - Ovarian serous cystadenocarcinoma(76;0.134)		TTCAGAACTGGAGTTTCCTGA	0.358													5	118					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11376073	11376073	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:11376073G>A	uc002rbd.1	-	5	927	c.478C>T	c.(478-480)CAA>TAA	p.Q160*		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	160	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		CTATCATCTTGAAAGGCATAA	0.308													6	47					0	0	1	0	0
MYCN	4613	broad.mit.edu	37	2	16082322	16082322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:16082322G>A	uc002rci.2	+	2	436	c.136G>A	c.(136-138)GGG>AGG	p.G46R	MYCNOS_uc002rch.1_5'Flank|MYCN_uc010yjr.1_Missense_Mutation_p.G38R	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	46					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			GACCCCCCCGGGGGAGGACAT	0.652			A		neuroblastoma								7	46					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17692161	17692161	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:17692161G>A	uc002rcl.1	-	3	3414	c.3390C>T	c.(3388-3390)ATC>ATT	p.I1130I	RAD51AP2_uc010exn.1_Silent_p.I1121I	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1130	Interaction with RAD51.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AACCAATCCTGATTGGCCTAC	0.318													3	27					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225596	21225596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:21225596G>A	uc002red.2	-	29	12826	c.12698C>T	c.(12697-12699)TCG>TTG	p.S4233L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4233					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGGACTTTCGAATATACCTG	0.413													9	75					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21226084	21226084	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:21226084C>T	uc002red.2	-	29	12338	c.12210G>A	c.(12208-12210)CTG>CTA	p.L4070L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4070					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CGTTGTCTTTCAGAGAGGTTA	0.478													7	152					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230393	21230393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:21230393C>T	uc002red.2	-	26	9475	c.9347G>A	c.(9346-9348)GGA>GAA	p.G3116E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3116					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCCATTTATTCCTACATGGGC	0.383													4	91					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230629	21230629	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:21230629A>T	uc002red.2	-	26	9239	c.9111T>A	c.(9109-9111)CTT>CTA	p.L3037L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3037					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGAAAAGAAAAGAGAATTTT	0.408													7	38					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21236168	21236168	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:21236168C>T	uc002red.2	-	25	4208	c.4080G>A	c.(4078-4080)ACG>ACA	p.T1360T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1360					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGTAGACATTCGTGGAGAGGT	0.512													9	183					0	0	1	0	0
ITSN2	50618	broad.mit.edu	37	2	24435576	24435576	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:24435576G>A	uc002rfe.2	-	33	4290	c.4032C>T	c.(4030-4032)TCC>TCT	p.S1344S	ITSN2_uc002rff.2_Silent_p.S1317S	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	1344	DH.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCAGGAAGCTGGAGAGGGGCA	0.572													29	244					0	0	1	0	0
ADCY3	109	broad.mit.edu	37	2	25044463	25044463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:25044463G>A	uc002rfs.3	-	19	3249	c.3050C>T	c.(3049-3051)GCC>GTC	p.A1017V	ADCY3_uc002rfr.3_Missense_Mutation_p.A604V|ADCY3_uc010ykm.1_Missense_Mutation_p.A1018V	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	1017	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CGCGAAGTCGGCCAGGTCAGC	0.607													14	287					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	26029103	26029103	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:26029103A>C	uc002rgs.2	-	3	468	c.247T>G	c.(247-249)TTG>GTG	p.L83V		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	83					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTACCTTCAAAGTATATACT	0.393													3	18					0	0	1	0	0
ABHD1	84696	broad.mit.edu	37	2	27353428	27353428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:27353428C>T	uc002rit.2	+	9	1194	c.1034C>T	c.(1033-1035)TCC>TTC	p.S345F	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_RNA	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	345						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCCAACACTCCCCCTACGTT	0.627													38	206					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27672913	27672913	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:27672913G>A	uc002rku.2	-	36	4053	c.4002C>T	c.(4000-4002)GTC>GTT	p.V1334V	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1334					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CAGCCAGAACGACTTCCATAT	0.473													13	84					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27803326	27803326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:27803326G>A	uc002rkz.3	+	1	3938	c.3887G>A	c.(3886-3888)CGA>CAA	p.R1296Q	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1296										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					ATCACCAAGCGACTTAGAAAA	0.408													4	77					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27804462	27804462	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:27804462C>T	uc002rkz.3	+	1	5074	c.5023C>T	c.(5023-5025)CAG>TAG	p.Q1675*	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1675	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CAGTCCCTCCCAGAGGAGCCA	0.572													17	274					0	0	1	0	0
ZNF512	84450	broad.mit.edu	37	2	27820991	27820991	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:27820991T>G	uc002rla.2	+	3	234	c.147T>G	c.(145-147)GAT>GAG	p.D49E	ZNF512_uc010ylv.1_5'UTR|ZNF512_uc010ylw.1_Missense_Mutation_p.D48E|ZNF512_uc002rlb.2_5'UTR|ZNF512_uc010ylx.1_5'UTR|ZNF512_uc002rlc.2_5'UTR|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_5'UTR	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	49					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCCCTCATGATGACTCCTTAA	0.408													7	166					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28843760	28843760	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:28843760T>C	uc002rmb.1	+	49	3442	c.3442T>C	c.(3442-3444)TTC>CTC	p.F1148L	PLB1_uc010ezj.1_Missense_Mutation_p.F1137L|PLB1_uc002rme.1_Missense_Mutation_p.F113L|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1148	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TCTGAAGAAGTTCAACCCTTA	0.557													30	209					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29234332	29234332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:29234332G>A	uc010ezl.2	+	7	1193	c.842G>A	c.(841-843)GGG>GAG	p.G281E	FAM179A_uc010ymm.1_Missense_Mutation_p.G281E|FAM179A_uc002rmr.3_5'Flank	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	281							binding			ovary(3)|skin(1)	4						TTGGCTCGGGGGAGTGGGCCT	0.567													4	46					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295276	29295276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:29295276C>T	uc002rmt.1	-	1	1852	c.1852G>A	c.(1852-1854)GAC>AAC	p.D618N		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	618					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TGACTGAGGTCCCTCTGGACC	0.632													6	31					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295971	29295971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:29295971G>A	uc002rmt.1	-	1	1157	c.1157C>T	c.(1156-1158)CCC>CTC	p.P386L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	386					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTCTGTGTGGGGTGAAGTCAC	0.597													5	72					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29420510	29420510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:29420510G>A	uc002rmy.2	-	27	4878	c.3971C>T	c.(3970-3972)TCT>TTT	p.S1324F	ALK_uc010ymo.1_Missense_Mutation_p.S256F	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1324	Protein kinase.|Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	ATATCCAAGAGAAAAGATTTC	0.443			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				7	95					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29451758	29451758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:29451758C>T	uc002rmy.2	-	16	3714	c.2807G>A	c.(2806-2808)GGA>GAA	p.G936E		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	936	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	ACCTATATATCCTCCGCCTCC	0.498			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				7	115					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31152341	31152341	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31152341C>T	uc002rnr.2	-	11	1690	c.1071G>A	c.(1069-1071)CGG>CGA	p.R357R	GALNT14_uc002rnq.2_Silent_p.R337R|GALNT14_uc002rns.2_Silent_p.R362R|GALNT14_uc010ymr.1_Silent_p.R322R|GALNT14_uc010ezo.1_Silent_p.R324R	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	357	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CTTCAGCTGTCCGCTTGGTGT	0.532													15	61					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31155017	31155017	+	Silent	SNP	G	A	A	rs148988791	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31155017G>A	uc002rnr.2	-	10	1594	c.975C>T	c.(973-975)ATC>ATT	p.I325I	GALNT14_uc002rnq.2_Silent_p.I305I|GALNT14_uc002rns.2_Silent_p.I330I|GALNT14_uc010ymr.1_Silent_p.I290I|GALNT14_uc010ezo.1_Silent_p.I292I|GALNT14_uc010ezp.1_3'UTR	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	325	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TGCAGGGGACGATCTCTAGGC	0.557													11	138					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31215708	31215708	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31215708G>A	uc002rnr.2	-	2	914	c.295C>T	c.(295-297)CTG>TTG	p.L99L	GALNT14_uc002rnq.2_Silent_p.L79L|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Silent_p.L64L|GALNT14_uc010ezo.1_Silent_p.L99L|GALNT14_uc010ezp.1_Silent_p.L70L	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	99	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					AAGTACCTCAGATGGCGAGTG	0.562													12	212					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31588338	31588338	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31588338G>A	uc002rnv.1	-	23	2608	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	843					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	ATCTGGCCAGGAAGGGATGTC	0.582													10	174					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31590848	31590848	+	Missense_Mutation	SNP	C	T	T	rs61731083	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31590848C>T	uc002rnv.1	-	20	2255	c.2176G>A	c.(2176-2178)GAA>AAA	p.E726K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	726					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTATCTGCTTCGGAAAACCCC	0.448													8	213					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31598248	31598248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31598248C>T	uc002rnv.1	-	15	1679	c.1600G>A	c.(1600-1602)GAC>AAC	p.D534N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	534					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CCACTCACGTCTTCCAGGTTC	0.542													11	168					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31606681	31606681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:31606681G>A	uc002rnv.1	-	10	905	c.826C>T	c.(826-828)CCT>TCT	p.P276S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	276	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	ACAATCATAGGAAACAGCATA	0.493													6	38					0	0	1	0	0
SPAST	6683	broad.mit.edu	37	2	32352053	32352053	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:32352053T>C	uc002roc.2	+	8	1356	c.1135T>C	c.(1135-1137)TTA>CTA	p.L379L	SPAST_uc002rod.2_Silent_p.L347L	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	379	Sufficient for microtubule severing.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CAGAGGGCTGTTACTCTTTGG	0.368													4	63					0	0	1	0	0
CRIM1	51232	broad.mit.edu	37	2	36704154	36704154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:36704154G>A	uc002rpd.2	+	6	1153	c.1114G>A	c.(1114-1116)GGT>AGT	p.G372S		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	372	VWFC 1.|Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				CGCCCAGTGTGGTGAGATAAA	0.483													21	88					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37296034	37296034	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:37296034A>G	uc002rpp.1	-	8	1063	c.967T>C	c.(967-969)TTG>CTG	p.L323L		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	323							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				CTGCGCTCCAACCACTGACCA	0.463													3	32					0	0	1	0	0
SFRS7	6432	broad.mit.edu	37	2	38976768	38976768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:38976768G>A	uc002rqz.2	-	3	527	c.289C>T	c.(289-291)CGA>TGA	p.R97*	SFRS7_uc002rra.2_RNA|SFRS7_uc010ynp.1_Nonsense_Mutation_p.R97*|GEMIN6_uc002rrb.2_5'Flank	NM_001031684	NP_001026854	Q16629	SRSF7_HUMAN	splicing factor, arginine/serine-rich 7	97					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding|zinc ion binding				0		all_hematologic(82;0.248)				AAGGGACGTCGGGCAGGTGGT	0.463													18	123					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39085890	39085890	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:39085890C>T	uc002rrf.2	-	6	1599	c.1500G>A	c.(1498-1500)AAG>AAA	p.K500K	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Silent_p.K500K	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	500							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				AAATCTTTTTCTTAAGGTTCA	0.403													5	95					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39088773	39088773	+	Missense_Mutation	SNP	C	T	T	rs145044261		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:39088773C>T	uc002rrf.2	-	5	878	c.779G>A	c.(778-780)GGA>GAA	p.G260E	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.G260E	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	260							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				AAATTTTTCTCCACAGATGGA	0.433													7	65					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40342471	40342472	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:40342471_40342472GG>AT	uc002rrx.2	-	10	2867_2868	c.2843_2844CC>AT	c.(2842-2844)TCC>TAT	p.S948Y	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.S943Y|SLC8A1_uc002rrz.2_Missense_Mutation_p.S935Y|SLC8A1_uc002rsa.2_Missense_Mutation_p.S912Y|SLC8A1_uc002rsd.3_Missense_Mutation_p.S912Y	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	948	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAAAGAGGCAGGATGTGAGGAG	0.505													12	80					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366817	40366817	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:40366817C>T	uc002rrx.2	-	9	2294	c.2270_splice	c.e9-1	p.G757_splice	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Splice_Site_p.G752_splice|SLC8A1_uc002rrz.2_Splice_Site_p.G744_splice|SLC8A1_uc002rsa.2_Splice_Site_p.G721_splice|SLC8A1_uc002rsd.3_Splice_Site_p.G721_splice	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium						cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCATCTTCCCCTAGAGAGAAT	0.498													10	92					0	0	1	0	0
SLC3A1	6519	broad.mit.edu	37	2	44508548	44508548	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:44508548C>T	uc002ruc.3	+	3	711	c.633C>T	c.(631-633)TTC>TTT	p.F211F	SLC3A1_uc002rty.2_Silent_p.F211F|SLC3A1_uc002rtz.2_Silent_p.F211F|SLC3A1_uc002rua.2_Silent_p.F211F|SLC3A1_uc002rub.2_Silent_p.F211F	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	211	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	TCATCGATTTCATACCAAACC	0.303													7	82					0	0	1	0	0
SRBD1	55133	broad.mit.edu	37	2	45778355	45778355	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:45778355G>A	uc002rus.2	-	12	1660	c.1584C>T	c.(1582-1584)CTC>CTT	p.L528L	SRBD1_uc010yoc.1_Silent_p.L47L	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	528					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			TTGTTAAAAGGAGCTGACGAA	0.388													4	46					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47221609	47221609	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:47221609C>T	uc002rvo.2	+	7	1325	c.957C>T	c.(955-957)TTC>TTT	p.F319F	TTC7A_uc002rvm.2_Silent_p.F285F|TTC7A_uc002rvn.1_Silent_p.F200F|TTC7A_uc010fbb.2_Silent_p.F319F|TTC7A_uc010fbc.2_Intron|TTC7A_uc002rvp.2_Silent_p.F200F|TTC7A_uc002rvq.2_Silent_p.F59F|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	319							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			AGAGTTCTTTCGCCACTCAGG	0.597													15	125					0	0	1	0	0
FBXO11	80204	broad.mit.edu	37	2	48059943	48059943	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:48059943A>T	uc010fbl.2	-	9	980	c.866T>A	c.(865-867)ATT>AAT	p.I289N	FBXO11_uc002rwe.2_Missense_Mutation_p.I289N|FBXO11_uc002rwf.2_Missense_Mutation_p.I289N|FBXO11_uc002rwg.1_Missense_Mutation_p.I289N|FBXO11_uc010fbk.2_5'Flank	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	373					ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GTGATCAATAATAGGGCTACA	0.333													7	184					0	0	1	0	0
KLRAQ1	129285	broad.mit.edu	37	2	48685349	48685349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:48685349G>A	uc002rwm.2	+	4	543	c.358G>A	c.(358-360)GAA>AAA	p.E120K	KLRAQ1_uc002rwi.1_Missense_Mutation_p.E120K|KLRAQ1_uc002rwj.2_Missense_Mutation_p.E120K|KLRAQ1_uc002rwl.2_Missense_Mutation_p.E74K|KLRAQ1_uc002rwk.2_Missense_Mutation_p.E120K|KLRAQ1_uc010yok.1_Missense_Mutation_p.E120K	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	120	Potential.									ovary(1)	1						AGAAGAGAATGAACGGTTGCA	0.348													6	111					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48915276	48915276	+	Nonsense_Mutation	SNP	G	A	A	rs121912524		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:48915276G>A	uc002rwu.3	-	11	1730	c.1660C>T	c.(1660-1662)CGA>TGA	p.R554*	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	554	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity	p.R554*(1)		ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TCTGGGTTTCGAACTGCAAAA	0.368									Familial_Male-Limited_Precocious_Puberty				5	73					0	0	1	0	0
ERLEC1	27248	broad.mit.edu	37	2	54040124	54040124	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:54040124A>T	uc002rxl.2	+	11	1420	c.1140A>T	c.(1138-1140)ACA>ACT	p.T380T	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Silent_p.T380T|ERLEC1_uc002rxn.2_Silent_p.T326T	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	380	PRKCSH 2.				ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						TTGTCGGGACATGGAACCAAG	0.393													4	69					0	0	1	0	0
GPR75	10936	broad.mit.edu	37	2	54081276	54081276	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:54081276G>A	uc002rxo.3	-	2	889	c.618C>T	c.(616-618)CTC>CTT	p.L206L	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	206	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CGACCACATAGAGAGACAAAA	0.507													11	90					0	0	1	0	0
SMEK2	57223	broad.mit.edu	37	2	55808737	55808737	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:55808737A>T	uc002rzc.2	-	8	1706	c.1331T>A	c.(1330-1332)CTA>CAA	p.L444Q	SMEK2_uc002rzb.2_Missense_Mutation_p.L444Q|SMEK2_uc002rzd.2_Missense_Mutation_p.L444Q|SMEK2_uc002rza.2_Missense_Mutation_p.L320Q	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	444						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TGGATCAATTAGAGTACGAAG	0.368													12	120					0	0	1	0	0
EFEMP1	2202	broad.mit.edu	37	2	56097945	56097945	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:56097945G>A	uc002rzh.2	-	10	1560	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I	EFEMP1_uc002rzi.2_Silent_p.I410I|EFEMP1_uc002rzj.2_Silent_p.I410I|EFEMP1_uc010ypc.1_Silent_p.I272I	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	410	Mediates interaction with TIMP3.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GTATCTGGAAGATGTCTGATG	0.433													6	87					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60687892	60687892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:60687892C>T	uc002sae.1	-	4	2383	c.2155G>A	c.(2155-2157)GGA>AGA	p.G719R	BCL11A_uc002sab.2_Missense_Mutation_p.G719R|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.G388R|BCL11A_uc010ypj.1_Missense_Mutation_p.G685R|BCL11A_uc002sad.1_Missense_Mutation_p.G567R|BCL11A_uc002saf.1_Missense_Mutation_p.G685R	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	719					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GTGCTCCCTCCACTTCCCGTG	0.647			T	IGH@	B-CLL								8	75					0	0	1	0	0
VPS54	51542	broad.mit.edu	37	2	64208791	64208791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:64208791C>T	uc002scq.2	-	3	530	c.367G>A	c.(367-369)GAA>AAA	p.E123K	VPS54_uc002scp.2_Missense_Mutation_p.E111K	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	123					protein transport|retrograde transport, endosome to Golgi						0						TGAGAGATTTCCTGTTGATAT	0.348													11	115					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69002468	69002468	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:69002468C>T	uc002seu.2	+	2	541	c.177C>T	c.(175-177)ATC>ATT	p.I59I	ARHGAP25_uc010yqk.1_Silent_p.I33I|ARHGAP25_uc010fdg.2_Silent_p.I59I|ARHGAP25_uc010yql.1_Silent_p.I59I|ARHGAP25_uc002sev.2_Silent_p.I52I|ARHGAP25_uc002sew.2_Silent_p.I52I|ARHGAP25_uc002sex.2_Silent_p.I52I|ARHGAP25_uc010fdh.1_RNA	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	59	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AGAGGTCCATCGTGAAGAACT	0.582													24	192					0	0	1	0	0
PCYOX1	51449	broad.mit.edu	37	2	70486642	70486642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:70486642G>A	uc002sgn.3	+	2	329	c.263G>A	c.(262-264)GGA>GAA	p.G88E	PCYOX1_uc010fdo.2_Missense_Mutation_p.G11E|PCYOX1_uc010yqu.1_Missense_Mutation_p.G88E	NM_016297	NP_057381	Q9UHG3	PCYOX_HUMAN	prenylcysteine oxidase 1 precursor	88					prenylated protein catabolic process	lysosome|very-low-density lipoprotein particle	prenylcysteine oxidase activity			central_nervous_system(1)	1						TACGAGGCAGGAGGTTCTGTC	0.468													16	404					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70922898	70922898	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:70922898G>A	uc002sgz.2	-	6	975	c.510C>T	c.(508-510)ATC>ATT	p.I170I	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.I170I|ADD2_uc002sha.2_Silent_p.I170I|ADD2_uc002sgx.2_Silent_p.I170I|ADD2_uc010fdt.1_Silent_p.I170I|ADD2_uc002shc.1_Silent_p.I170I|ADD2_uc002shd.1_Silent_p.I170I|ADD2_uc010fdu.1_Silent_p.I186I	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	170					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCTTAGGGCTGATCAGGAAGT	0.522													6	52					0	0	1	0	0
CLEC4F	165530	broad.mit.edu	37	2	71044108	71044108	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:71044108G>A	uc002shf.2	-	4	482	c.405C>T	c.(403-405)CTC>CTT	p.L135L	CLEC4F_uc010yqv.1_Silent_p.L135L	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	135	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CGAGCACCTGGAGCTGCGAAT	0.458													11	151					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71797758	71797758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:71797758G>A	uc002sie.2	+	29	3437	c.3061G>A	c.(3061-3063)GAG>AAG	p.E1021K	DYSF_uc010feg.2_Missense_Mutation_p.E1052K|DYSF_uc010feh.2_Missense_Mutation_p.E1007K|DYSF_uc002sig.3_Missense_Mutation_p.E1007K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E1021K|DYSF_uc010fef.2_Missense_Mutation_p.E1038K|DYSF_uc010fei.2_Missense_Mutation_p.E1038K|DYSF_uc010fek.2_Missense_Mutation_p.E1039K|DYSF_uc010fej.2_Missense_Mutation_p.E1008K|DYSF_uc010fel.2_Missense_Mutation_p.E1008K|DYSF_uc010feo.2_Missense_Mutation_p.E1053K|DYSF_uc010fem.2_Missense_Mutation_p.E1022K|DYSF_uc010fen.2_Missense_Mutation_p.E1039K|DYSF_uc002sif.2_Missense_Mutation_p.E1022K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1021	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CATCCCCCCGGAGCGGAAGCC	0.617													4	27					0	0	1	0	0
SFXN5	94097	broad.mit.edu	37	2	73188340	73188340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:73188340G>A	uc002siq.2	-	13	996	c.865C>T	c.(865-867)CCT>TCT	p.P289S	SFXN5_uc002sio.2_Missense_Mutation_p.P181S|SFXN5_uc010yrc.1_Missense_Mutation_p.P138S|SFXN5_uc002sip.2_Intron|SFXN5_uc010fet.2_Silent_p.S221S|SFXN5_uc010fer.2_Intron|SFXN5_uc010feq.2_Missense_Mutation_p.P71S|SFXN5_uc010fes.2_Missense_Mutation_p.P71S	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	289	Helical; (Potential).				iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						CTTTGCACAGGGAGGAGCAGC	0.682													5	37					0	0	1	0	0
SFXN5	94097	broad.mit.edu	37	2	73198740	73198740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:73198740C>T	uc002siq.2	-	11	831	c.700G>A	c.(700-702)GAT>AAT	p.D234N	SFXN5_uc002sio.2_Missense_Mutation_p.D126N|SFXN5_uc010yrc.1_Missense_Mutation_p.D83N|SFXN5_uc002sip.2_Intron|SFXN5_uc010fet.2_Intron|SFXN5_uc010fer.2_RNA|SFXN5_uc010feq.2_Missense_Mutation_p.D16N|SFXN5_uc010fes.2_Missense_Mutation_p.D16N	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	234					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						AGGTTGCCATCGCTGTCCAGG	0.617													8	77					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74043123	74043123	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74043123G>A	uc002sjr.1	+	3	1894	c.1773G>A	c.(1771-1773)GGG>GGA	p.G591G		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	591	Lys-rich.									ovary(2)	2						AGCAGTCAGGGAAAAAAGTCA	0.438													3	43					0	0	1	0	0
C2orf78	388960	broad.mit.edu	37	2	74043916	74043916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74043916C>T	uc002sjr.1	+	3	2687	c.2566C>T	c.(2566-2568)CCA>TCA	p.P856S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	856										ovary(2)	2						CCAACCCCGTCCATGGAGGAA	0.537													7	83					0	0	1	0	0
DGUOK	1716	broad.mit.edu	37	2	74177718	74177718	+	Silent	SNP	C	T	T	rs139533561		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74177718C>T	uc002sjx.2	+	4	535	c.450C>T	c.(448-450)ATC>ATT	p.I150I	DGUOK_uc002sjy.2_Intron|DGUOK_uc002sjz.2_Intron	NM_080916	NP_550438	Q16854	DGUOK_HUMAN	deoxyguanosine kinase isoform a precursor	150					guanosine metabolic process|purine base metabolic process|purine deoxyribonucleoside metabolic process|purine-containing compound salvage	mitochondrial matrix	ATP binding|deoxyguanosine kinase activity|phosphotransferase activity, alcohol group as acceptor				0						CCAGGTATATCTTTGCAAAGA	0.463													18	282					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74512931	74512931	+	Missense_Mutation	SNP	C	T	T	rs144161107		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74512931C>T	uc002sko.1	-	3	372	c.370G>A	c.(370-372)GGA>AGA	p.G124R	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.G124R|SLC4A5_uc010ffc.1_Missense_Mutation_p.G124R|SLC4A5_uc002skp.1_Missense_Mutation_p.G60R|SLC4A5_uc002sks.1_Missense_Mutation_p.G124R	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	124	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity	p.G124R(1)		ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						ATCTGGTCTCCGTCATGCTGC	0.622													5	50					0	0	1	0	0
DOK1	1796	broad.mit.edu	37	2	74784195	74784195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74784195G>A	uc002sms.2	+	5	1422	c.1400G>A	c.(1399-1401)AGA>AAA	p.R467K	DOK1_uc002smr.2_Missense_Mutation_p.R328K|DOK1_uc010ffo.2_Missense_Mutation_p.R328K|DOK1_uc002smt.2_Missense_Mutation_p.R253K|DOK1_uc002smu.2_Missense_Mutation_p.R253K|DOK1_uc010yrz.1_Missense_Mutation_p.R456K|DOK1_uc002smv.2_Missense_Mutation_p.R328K|DOK1_uc002smw.1_Missense_Mutation_p.R253K	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	467					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						GGGCTCTCTAGAGTAGGGACT	0.602													13	62					0	0	1	0	0
SEMA4F	10505	broad.mit.edu	37	2	74902995	74902995	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:74902995C>T	uc002sna.1	+	12	1713	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	SEMA4F_uc010ffq.1_Silent_p.F501F|SEMA4F_uc010ffr.1_Silent_p.F146F|SEMA4F_uc002snb.1_Silent_p.F146F|SEMA4F_uc002snc.1_Silent_p.F379F	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	534	PSI.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CCTGGAGCTTCCGGCTGGATG	0.592													11	68					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975898	76975898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:76975898C>T	uc002snr.2	-	4	2111	c.1696G>A	c.(1696-1698)GGC>AGC	p.G566S	LRRTM4_uc002snq.2_Missense_Mutation_p.G566S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	566	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TGGTCTCGGCCCAGCTCCAGG	0.607													26	180					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77745843	77745843	+	Silent	SNP	G	A	A	rs34870411		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:77745843G>A	uc002snr.2	-	3	1567	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I	LRRTM4_uc002snq.2_Silent_p.I384I|LRRTM4_uc002sns.2_Silent_p.I384I|LRRTM4_uc002snt.2_Silent_p.I385I	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	384	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TAGGTCTAGGGATAATCAGAG	0.488													4	18					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746658	77746658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:77746658C>T	uc002snr.2	-	3	752	c.337G>A	c.(337-339)GAA>AAA	p.E113K	LRRTM4_uc002snq.2_Missense_Mutation_p.E113K|LRRTM4_uc002sns.2_Missense_Mutation_p.E113K|LRRTM4_uc002snt.2_Missense_Mutation_p.E114K	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	113	LRR 3.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		AGAATTAATTCTTTCAGTCTA	0.393													6	25					0	0	1	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530936	80530936	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:80530936G>A	uc002sok.1	-	2	279	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	3						axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CGAGCAGCAGGAAATCCATTA	0.557										HNSCC(69;0.2)			7	112					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86258545	86258545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:86258545C>T	uc002sqs.2	-	30	4865	c.4486G>A	c.(4486-4488)GAG>AAG	p.E1496K	POLR1A_uc010ytb.1_Missense_Mutation_p.E862K	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1496					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TCCATGGCCTCGGGCCCCTGG	0.652													19	165					0	0	1	0	0
PTCD3	55037	broad.mit.edu	37	2	86355108	86355108	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:86355108C>T	uc002sqw.2	+	14	1207	c.1141C>T	c.(1141-1143)CAA>TAA	p.Q381*	PTCD3_uc002sqx.1_5'UTR	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	381	PPR 6.					mitochondrion	protein binding			ovary(1)	1						CCTGTTTGATCAACCTGGTAT	0.338													13	149					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89265822	89265822	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:89265822C>T	uc010ytr.1	-	95		c.7744G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GTTGCAAAATCTTCAGGCTGC	0.498													12	189					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89309620	89309620	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:89309620G>A	uc010ytr.1	-	74		c.6727C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ATGCAGCATAGATCAGGAGCT	0.522													8	91					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89417072	89417072	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:89417072C>T	uc010ytr.1	-	42		c.4530G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACTCTGTCTCCTACAGATGCA	0.478													24	74					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90193258	90193258	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:90193258C>T	uc010fhm.2	+	22		c.2848C>T								Parts of antibodies, mostly variable regions.																		CAGCAGAAACCAGGGAAAGCT	0.527													7	207					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90193280	90193280	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:90193280G>A	uc010fhm.2	+	22		c.2870G>A								Parts of antibodies, mostly variable regions.																		CTAAGCTCCTGATCTATGATG	0.537													5	156					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95464631	95464631	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:95464631C>T	uc010fhp.2	-	17		c.2759G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TTTTTATCCTCCTCAAGTTTT	0.294													3	16					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95497751	95497751	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:95497751C>T	uc010fhp.2	-	7		c.796_splice	c.e7+1			NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ACGGTTCTCACCTTCTCCTTG	0.274													6	147					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95497827	95497827	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:95497827G>A	uc010fhp.2	-	7		c.721C>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ACTTTCTCGGGGACACACTGC	0.323													14	129					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95845936	95845936	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:95845936C>T	uc002suf.2	+	4	655	c.193C>T	c.(193-195)CAA>TAA	p.Q65*	ZNF2_uc002sug.2_Nonsense_Mutation_p.Q23*|ZNF2_uc010yue.1_Intron|ZNF2_uc010fhs.2_Intron	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		TGTGATTTTCCAATTGAAGAG	0.463													11	124					0	0	1	0	0
ARID5A	10865	broad.mit.edu	37	2	97215090	97215090	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:97215090G>A	uc002swe.2	+	3	253	c.153G>A	c.(151-153)GAG>GAA	p.E51E	ARID5A_uc010yuq.1_5'UTR|ARID5A_uc002swf.2_Intron|ARID5A_uc002swg.2_Intron	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	51					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						agcgggaggaggagcaggagc	0.463													10	104					0	0	1	0	0
ZAP70	7535	broad.mit.edu	37	2	98351858	98351858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:98351858C>T	uc002syd.1	+	10	1435	c.1228C>T	c.(1228-1230)CTC>TTC	p.L410F	ZAP70_uc010yvf.1_3'UTR|ZAP70_uc002sye.1_Missense_Mutation_p.L300F|ZAP70_uc002syf.1_Missense_Mutation_p.L103F	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	410	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GGCCGAGGCCCTCATGCTGGT	0.667													10	217					0	0	1	0	0
TMEM131	23505	broad.mit.edu	37	2	98392448	98392449	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:98392448_98392449GG>AA	uc002syh.3	-	32	4406_4407	c.4177_4178CC>TT	c.(4177-4179)CCA>TTA	p.P1393L		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1393	Lys-rich.					integral to membrane				ovary(4)|central_nervous_system(2)	6						CTTCTTAGGTGGTTTCACCTTG	0.371													7	47					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98906990	98906990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:98906990G>A	uc002syo.2	+	23	3326	c.3062G>A	c.(3061-3063)GGA>GAA	p.G1021E	VWA3B_uc002sym.2_Missense_Mutation_p.G1021E|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.G678E|VWA3B_uc002syp.1_Missense_Mutation_p.G413E|VWA3B_uc002syq.1_Missense_Mutation_p.G297E|VWA3B_uc002syr.1_Missense_Mutation_p.G338E|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1021										ovary(3)|large_intestine(2)|skin(1)	6						AAATTGCAAGGAAATCCAACA	0.348													3	33					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100199320	100199320	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:100199320G>A	uc002tag.2	-	16	2969	c.2733C>T	c.(2731-2733)GCC>GCT	p.A911A	AFF3_uc002taf.2_Silent_p.A936A|AFF3_uc010fiq.1_Silent_p.A911A|AFF3_uc010yvr.1_Silent_p.A1064A|AFF3_uc002tah.1_Silent_p.A936A	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	911					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGCTGGAAGAGGCTGAAGTAA	0.498													7	84					0	0	1	0	0
NMS	129521	broad.mit.edu	37	2	101099714	101099714	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:101099714G>A	uc002tan.1	+	10	457	c.450G>A	c.(448-450)CAG>CAA	p.Q150Q		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	150					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						CTTTTTTTAGGATTCAGTGGT	0.338													6	34					0	0	1	0	0
NPAS2	4862	broad.mit.edu	37	2	101580569	101580569	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:101580569C>T	uc002tap.1	+	8	934	c.648C>T	c.(646-648)TGC>TGT	p.C216C	NPAS2_uc010yvt.1_Silent_p.C281C	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	216					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAAGACCTTGCCGGGTGCCAC	0.527													7	79					0	0	1	0	0
IL18R1	8809	broad.mit.edu	37	2	103013022	103013022	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103013022G>A	uc002tbw.3	+	11	1452	c.1302G>A	c.(1300-1302)GAG>GAA	p.E434E	IL18R1_uc010ywc.1_Silent_p.E433E|IL18R1_uc010ywd.1_Silent_p.E278E|IL18R1_uc010fiy.2_Silent_p.E434E	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	434	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						CACTGATAGAGAAAAGCCGAA	0.358													8	39					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103059717	103059717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103059717C>T	uc002tbx.2	+	8	1338	c.854C>T	c.(853-855)CCT>CTT	p.P285L	IL18RAP_uc010fiz.2_Missense_Mutation_p.P143L	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	285	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GTCTTTAACCCTGTCATAAAA	0.418													3	55					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103128671	103128671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103128671C>T	uc002tbz.3	+	7	1955	c.1498C>T	c.(1498-1500)CAC>TAC	p.H500Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	500	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GCTGATGGATCACTTAAAGGC	0.443													8	136					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103136406	103136406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103136406C>T	uc002tbz.3	+	9	2267	c.1810C>T	c.(1810-1812)CGG>TGG	p.R604W		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	604	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GTACCAAGTTCGGCAAAGGGT	0.463													3	56					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103281630	103281630	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103281630C>T	uc002tca.2	+	3	967	c.825C>T	c.(823-825)ATC>ATT	p.I275I		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	275	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTGCAGGAATCGCCAACTTCT	0.433													6	175					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300777	103300777	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:103300777C>T	uc002tca.2	+	5	1549	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	469	Helical; Name=M13; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTGTCATATTCTTTACTGTCT	0.403													15	159					0	0	1	0	0
GPR45	11250	broad.mit.edu	37	2	105859071	105859071	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:105859071G>A	uc002tco.1	+	1	872	c.756G>A	c.(754-756)CAG>CAA	p.Q252Q		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	252	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						TGCAGCGGCAGCAACAGGTCA	0.652													6	156					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108608652	108608652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:108608652G>A	uc002tdv.2	+	3	545	c.269G>A	c.(268-270)GGA>GAA	p.G90E	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Missense_Mutation_p.G90E|SLC5A7_uc010ywn.1_5'UTR	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	90	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GCACCAATTGGATATTCTCTT	0.418													6	54					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108999909	108999909	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:108999909G>A	uc002tea.1	+	5	931	c.558G>A	c.(556-558)TGG>TGA	p.W186*	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Nonsense_Mutation_p.W111*	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	186					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TGAAAGGATGGTGGGAAGCCA	0.473													5	73					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111789230	111789230	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:111789230C>T	uc002tgr.3	+	16	1622	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	ACOXL_uc010fkc.2_Silent_p.F436F|ACOXL_uc010yxk.1_Silent_p.F436F	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	466					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AGGATTTTTTCCATGCCTGGA	0.458													5	83					0	0	1	0	0
BCL2L11	10018	broad.mit.edu	37	2	111881552	111881552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:111881552C>T	uc002tgv.1	+	2	518	c.230C>T	c.(229-231)TCC>TTC	p.S77F	BCL2L11_uc002tgt.1_Intron|BCL2L11_uc002tgu.1_Intron|BCL2L11_uc002tgw.1_Intron|BCL2L11_uc002tgx.1_Intron|BCL2L11_uc010fkd.1_Intron|BCL2L11_uc002tgy.1_Intron|BCL2L11_uc002tgz.1_Intron|BCL2L11_uc010fke.1_Intron|BCL2L11_uc002tha.1_Missense_Mutation_p.S77F|BCL2L11_uc002thb.1_Intron|BCL2L11_uc002thc.1_Intron|BCL2L11_uc002thd.1_Intron	NM_138621	NP_619527	O43521	B2L11_HUMAN	BCL2-like 11 isoform 1	77					activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|endomembrane system|mitochondrial outer membrane|plasma membrane	protein binding|protein binding				0						GCTACCAGATCCCCGCTTTTC	0.592													8	105					0	0	1	0	0
POLR1B	84172	broad.mit.edu	37	2	113322065	113322065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:113322065C>T	uc002thw.2	+	10	2315	c.1735C>T	c.(1735-1737)CGT>TGT	p.R579C	POLR1B_uc010fkn.2_Missense_Mutation_p.R523C|POLR1B_uc002thx.2_Missense_Mutation_p.R440C|POLR1B_uc010fko.2_Intron|POLR1B_uc010fkp.2_Missense_Mutation_p.R18C|POLR1B_uc010yxn.1_Missense_Mutation_p.R617C|POLR1B_uc002thy.2_Missense_Mutation_p.R440C|POLR1B_uc010yxo.1_Missense_Mutation_p.R356C	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	579					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						AGATTCTCTTCGTCATTTTAA	0.507													18	142					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113765534	113765534	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:113765534C>T	uc010yxr.1	+	4	390	c.390C>T	c.(388-390)GTC>GTT	p.V130V		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	130					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						TCATCGCTGTCAGCTCTGAAG	0.517													4	65					0	0	1	0	0
IL1F8	27177	broad.mit.edu	37	2	113786566	113786566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:113786566G>A	uc002tiq.1	-	4	315	c.211C>T	c.(211-213)CTC>TTC	p.L71F	IL1F8_uc002tir.1_Missense_Mutation_p.L71F	NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	71					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding	p.L71V(1)		ovary(1)	1						AAGAGACAGAGATCTTTTCCC	0.418													5	71					0	0	1	0	0
IL1F5	26525	broad.mit.edu	37	2	113820065	113820065	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:113820065G>A	uc002tis.2	+	5	412	c.279G>A	c.(277-279)AAG>AAA	p.K93K	IL1F5_uc002tit.2_Silent_p.K93K	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	93						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TTGGTGCCAAGGAATCCAAGA	0.632													3	66					0	0	1	0	0
IL1F10	84639	broad.mit.edu	37	2	113832845	113832845	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:113832845C>T	uc002tiu.2	+	5	438	c.363C>T	c.(361-363)TTC>TTT	p.F121F	IL1F10_uc002tiv.2_Silent_p.F121F|IL1F10_uc002tiw.2_Silent_p.F113F	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	121						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						CTGGCTGGTTCCTGTGTGGCC	0.592													4	88					0	0	1	0	0
CLASP1	23332	broad.mit.edu	37	2	122285421	122285421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:122285421G>A	uc002tnc.2	-	5	814	c.424C>T	c.(424-426)CGT>TGT	p.R142C	CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.R142C|CLASP1_uc010yza.1_Missense_Mutation_p.R142C|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Missense_Mutation_p.R142C	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	142					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					TCTCGAGTACGGAAATTCTTG	0.433													10	58					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125320882	125320882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:125320882G>A	uc002tno.2	+	11	2099	c.1735G>A	c.(1735-1737)GGT>AGT	p.G579S	CNTNAP5_uc010flu.2_Missense_Mutation_p.G580S	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	579	EGF-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AAGTTACACTGGTGCCACCTG	0.458													3	7					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125530445	125530445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:125530445C>T	uc002tno.2	+	17	2964	c.2600C>T	c.(2599-2601)TCT>TTT	p.S867F	CNTNAP5_uc010flu.2_Missense_Mutation_p.S868F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	867	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CAGTCTCCTTCTCTTCTGAAT	0.527													4	67					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125547539	125547539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:125547539G>A	uc002tno.2	+	18	3174	c.2810G>A	c.(2809-2811)GGA>GAA	p.G937E	CNTNAP5_uc010flu.2_Missense_Mutation_p.G938E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	937	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CACTTGAATGGACAGAAAATG	0.507													12	84					0	0	1	0	0
BIN1	274	broad.mit.edu	37	2	127808401	127808401	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:127808401G>A	uc002tns.1	-	17	1894	c.1549C>T	c.(1549-1551)CTG>TTG	p.L517L	BIN1_uc010yzf.1_Silent_p.L309L|BIN1_uc010yzg.1_Silent_p.L394L|BIN1_uc002tnu.1_Silent_p.L348L|BIN1_uc002toa.1_Silent_p.L406L|BIN1_uc002tnt.1_Silent_p.L333L|BIN1_uc002tnv.1_Silent_p.L474L|BIN1_uc002tnw.1_Silent_p.L421L|BIN1_uc002tnx.1_Silent_p.L378L|BIN1_uc002tny.1_Silent_p.L430L|BIN1_uc002tnz.1_Silent_p.L442L|BIN1_uc002tob.1_Silent_p.L363L|BIN1_uc002toc.1_Silent_p.L399L	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	517					cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CCTGGGGGCAGGTCCAAGCGC	0.557											OREG0014962	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	131					0	0	1	0	0
BIN1	274	broad.mit.edu	37	2	127821182	127821182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:127821182C>T	uc002tns.1	-	9	1084	c.739G>A	c.(739-741)GGC>AGC	p.G247S	BIN1_uc010yzf.1_Missense_Mutation_p.G192S|BIN1_uc010yzg.1_Missense_Mutation_p.G247S|BIN1_uc002tnu.1_Missense_Mutation_p.G216S|BIN1_uc002toa.1_Missense_Mutation_p.G216S|BIN1_uc002tnt.1_Missense_Mutation_p.G216S|BIN1_uc002tnv.1_Missense_Mutation_p.G247S|BIN1_uc002tnw.1_Missense_Mutation_p.G216S|BIN1_uc002tnx.1_Missense_Mutation_p.G216S|BIN1_uc002tny.1_Missense_Mutation_p.G247S|BIN1_uc002tnz.1_Missense_Mutation_p.G216S|BIN1_uc002tob.1_Missense_Mutation_p.G216S|BIN1_uc002toc.1_Missense_Mutation_p.G216S	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	247	BAR.|Potential.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TCCTCCAGGCCCGCGATGCTC	0.612													4	35					0	0	1	0	0
BIN1	274	broad.mit.edu	37	2	127821555	127821555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:127821555C>T	uc002tns.1	-	8	997	c.652G>A	c.(652-654)GAG>AAG	p.E218K	BIN1_uc010yzf.1_Missense_Mutation_p.E163K|BIN1_uc010yzg.1_Missense_Mutation_p.E218K|BIN1_uc002tnu.1_Missense_Mutation_p.E187K|BIN1_uc002toa.1_Missense_Mutation_p.E187K|BIN1_uc002tnt.1_Missense_Mutation_p.E187K|BIN1_uc002tnv.1_Missense_Mutation_p.E218K|BIN1_uc002tnw.1_Missense_Mutation_p.E187K|BIN1_uc002tnx.1_Missense_Mutation_p.E187K|BIN1_uc002tny.1_Missense_Mutation_p.E218K|BIN1_uc002tnz.1_Missense_Mutation_p.E187K|BIN1_uc002tob.1_Missense_Mutation_p.E187K|BIN1_uc002toc.1_Missense_Mutation_p.E187K	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	218	BAR.|Potential.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		ACATTCATCTCCTCAAACACC	0.652													11	115					0	0	1	0	0
IWS1	55677	broad.mit.edu	37	2	128261059	128261059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:128261059G>A	uc002ton.2	-	4	1616	c.1313C>T	c.(1312-1314)TCT>TTT	p.S438F	IWS1_uc010yzl.1_RNA|uc002too.1_5'Flank	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	438	Glu-rich.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		CTCACTGTCAGATGCTATGGT	0.433													10	97					0	0	1	0	0
SMPD4	55627	broad.mit.edu	37	2	130911453	130911453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:130911453G>A	uc002tqq.1	-	17	2352	c.1832C>T	c.(1831-1833)TCC>TTC	p.S611F	SMPD4_uc002tqo.1_Missense_Mutation_p.S143F|SMPD4_uc002tqp.1_Missense_Mutation_p.S350F|SMPD4_uc010yzy.1_Missense_Mutation_p.S360F|SMPD4_uc010yzz.1_Missense_Mutation_p.S275F|SMPD4_uc002tqr.1_Missense_Mutation_p.S582F|SMPD4_uc002tqs.1_Missense_Mutation_p.S479F|SMPD4_uc002tqt.1_Missense_Mutation_p.S460F|SMPD4_uc010zaa.1_Missense_Mutation_p.S469F|SMPD4_uc010zab.1_Missense_Mutation_p.S509F|SMPD4_uc010zac.1_Missense_Mutation_p.S352F|SMPD4_uc010zad.1_Missense_Mutation_p.S247F	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	572					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	ACACTGGTCGGAGATGGACTT	0.632													5	77					0	0	1	0	0
TUBA3E	112714	broad.mit.edu	37	2	130953884	130953884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:130953884C>T	uc002tqv.2	-	2	165	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	22					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					CAGTACAGTTCCCAGCAGGCA	0.512													12	237					0	0	1	0	0
GPR148	344561	broad.mit.edu	37	2	131487693	131487693	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:131487693C>T	uc002trv.1	+	1	971	c.969C>T	c.(967-969)CGC>CGT	p.R323R		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	323	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					ACCTGCTCCGCTACCGGCAGC	0.567													8	59					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131521892	131521892	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:131521892C>T	uc002trw.2	+	2	2437	c.2247C>T	c.(2245-2247)GTC>GTT	p.V749V	FAM123C_uc010fmv.2_Silent_p.V749V|FAM123C_uc010fms.1_Silent_p.V749V|FAM123C_uc010fmt.1_Silent_p.V749V|FAM123C_uc010fmu.1_Silent_p.V749V	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	749										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GAGATCGTGTCCAGGACCTGA	0.637													3	57					0	0	1	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131688698	131688698	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:131688698G>A	uc002tsa.1	+	3	688	c.168G>A	c.(166-168)AGG>AGA	p.R56R	ARHGEF4_uc010fmw.1_Silent_p.R702R|ARHGEF4_uc002tsb.1_Silent_p.R56R|ARHGEF4_uc010fmx.1_Silent_p.R56R|ARHGEF4_uc002trz.1_Silent_p.R702R	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	56					apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		CACAGCCTAGGGGCATCCCTC	0.607													3	30					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976441	131976441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:131976441G>A	uc002tsn.2	+	1	518	c.466G>A	c.(466-468)GAT>AAT	p.D156N	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	156							ATP binding				0						CCCCAGAAAGGATCTCATCGT	0.572													11	212					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132288265	132288265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:132288265G>A	uc002tta.2	+	3	461	c.409G>A	c.(409-411)GAG>AAG	p.E137K	CCDC74A_uc002ttb.2_Intron	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	137										skin(1)	1						CAGGCTGAAGGAGGGCTCCTC	0.662													8	113					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137814029	137814029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:137814029G>A	uc002tva.1	+	2	86	c.86G>A	c.(85-87)GGA>GAA	p.G29E	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGTCCCGGAGGAGTCCAGAGT	0.493													4	37					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928414	137928414	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:137928414C>T	uc002tva.1	+	6	1536	c.1536C>T	c.(1534-1536)TAC>TAT	p.Y512Y	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.Y402Y	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CAATGTGCTACCGATGGCTGG	0.532													3	36					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138000129	138000129	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:138000129G>A	uc002tva.1	+	9	2160	c.2160G>A	c.(2158-2160)AGG>AGA	p.R720R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.R610R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCCCAAGGATGTGCCAAG	0.478													6	45					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138414689	138414689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:138414689G>A	uc002tva.1	+	23	4247	c.4247G>A	c.(4246-4248)CGA>CAA	p.R1416Q	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AATAACGAACGAACTGTATGG	0.413													6	42					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141272252	141272252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141272252C>T	uc002tvj.1	-	51	9211	c.8239G>A	c.(8239-8241)GAT>AAT	p.D2747N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2747	Extracellular (Potential).|LDL-receptor class A 16.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTAACCCATCCCCACAGTCA	0.363										TSP Lung(27;0.18)			5	147					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141473590	141473590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141473590G>A	uc002tvj.1	-	37	6947	c.5975C>T	c.(5974-5976)TCC>TTC	p.S1992F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1992	Extracellular (Potential).|LDL-receptor class B 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGGCCTTGGGAAATAATTAC	0.353										TSP Lung(27;0.18)			6	47					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141526904	141526904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141526904G>A	uc002tvj.1	-	35	6608	c.5636C>T	c.(5635-5637)TCA>TTA	p.S1879L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1879	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATAAGAAATGATTCTATACC	0.363										TSP Lung(27;0.18)			5	50					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141571369	141571369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141571369G>A	uc002tvj.1	-	32	6188	c.5216C>T	c.(5215-5217)TCG>TTG	p.S1739L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1739	Extracellular (Potential).|LDL-receptor class B 16.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATAGTCTATCGATAGACCTGT	0.343										TSP Lung(27;0.18)			3	38					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141773430	141773430	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141773430C>T	uc002tvj.1	-	13	2997	c.2025G>A	c.(2023-2025)AGG>AGA	p.R675R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	675	Extracellular (Potential).|LDL-receptor class B 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTTCTCAATCCTTCCCACGC	0.403										TSP Lung(27;0.18)			6	79					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141812805	141812805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:141812805C>T	uc002tvj.1	-	10	2404	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	478	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCATATGGATCGACTTCACAT	0.428										TSP Lung(27;0.18)			3	41					0	0	1	0	0
KYNU	8942	broad.mit.edu	37	2	143718222	143718222	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:143718222C>T	uc002tvl.2	+	8	742	c.612C>T	c.(610-612)ATC>ATT	p.I204I	KYNU_uc002tvk.2_Silent_p.I204I|KYNU_uc010fnm.2_Silent_p.I204I	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	204					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TAGAGGATATCCTTGAAGTAA	0.368													8	42					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149240999	149240999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:149240999G>A	uc002twm.3	+	10	3827	c.2839G>A	c.(2839-2841)GGA>AGA	p.G947R	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.G947R|MBD5_uc002two.2_5'UTR|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	947						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GCCTTCAGCAGGAGAAGGCAA	0.468													5	54					0	0	1	0	0
EPC2	26122	broad.mit.edu	37	2	149520342	149520342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:149520342C>T	uc010zbt.1	+	6	946	c.919C>T	c.(919-921)CAT>TAT	p.H307Y		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	307					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TAATGGAAATCATCACAAAGT	0.358													3	29					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152426609	152426609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:152426609C>T	uc010fnx.2	-	81	12504	c.12313G>A	c.(12313-12315)GAA>AAA	p.E4105K	NEB_uc002txr.2_Missense_Mutation_p.E528K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4105	Nebulin 112.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCTGCAGTTCGTAGGCCTTC	0.512													3	13					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152500373	152500373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:152500373C>T	uc010fnx.2	-	57	8106	c.7915G>A	c.(7915-7917)GAT>AAT	p.D2639N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2639	Nebulin 71.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGGATGACATCGCTCTGGTCG	0.512													13	191					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152522759	152522759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:152522759G>A	uc010fnx.2	-	41	5067	c.4876C>T	c.(4876-4878)CAC>TAC	p.H1626Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1626	Nebulin 42.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGAGGTGTGTGGTACTTGGTC	0.473													14	200					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152534673	152534673	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:152534673G>C	uc010fnx.2	-	33	3475	c.3284C>G	c.(3283-3285)GCT>GGT	p.A1095G		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1095					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTTCCCTTTAGCCTTTTCATA	0.358													4	25					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152579986	152579986	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:152579986T>C	uc010fnx.2	-	9	818	c.627A>G	c.(625-627)GAA>GAG	p.E209E		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	209	Nebulin 4.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTTCCCAGTCTTCAGTGTACA	0.393													2	9					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155099328	155099328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:155099328C>T	uc002tyr.3	+	6	1163	c.596C>T	c.(595-597)TCA>TTA	p.S199L	GALNT13_uc002tyt.3_Missense_Mutation_p.S199L|GALNT13_uc010foc.1_Missense_Mutation_p.S18L|GALNT13_uc010fod.2_5'Flank	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	199	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GCAGCTGCTTCAAAAGGGCAG	0.423													4	45					0	0	1	0	0
BAZ2B	29994	broad.mit.edu	37	2	160269009	160269009	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:160269009G>A	uc002uao.2	-	14	2866	c.2514C>T	c.(2512-2514)ATC>ATT	p.I838I	BAZ2B_uc002uap.2_Silent_p.I802I|BAZ2B_uc002uaq.1_Silent_p.I668I|BAZ2B_uc002uar.1_Silent_p.I411I	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	838	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						CCATTGCCCTGATACGAGGAA	0.398													5	49					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160879358	160879358	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:160879358C>T	uc002ube.1	-	7	1319	c.1112G>A	c.(1111-1113)TGG>TAG	p.W371*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.W371*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.W371*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	371	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ATAATATTTCCACGCATCTTT	0.348													4	63					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162719559	162719559	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:162719559C>T	uc002ubx.3	+	6	937	c.753C>T	c.(751-753)TCC>TCT	p.S251S	SLC4A10_uc010fpa.1_Silent_p.S263S|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.S251S|SLC4A10_uc010zcs.1_Silent_p.S262S	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	251	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						AACCAAATTCCATGGACAAAA	0.338													3	49					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162804210	162804210	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:162804210C>T	uc002ubx.3	+	17	2422	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	SLC4A10_uc002uby.3_Silent_p.F716F|SLC4A10_uc010zcs.1_Silent_p.F727F	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	746	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TGAAGCAGTTCAAGACTAGCA	0.383													15	110					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163361035	163361035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:163361035G>A	uc002uch.1	-	6	1258	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	KCNH7_uc002uci.2_Missense_Mutation_p.S342L	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	349	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AGGAGGTGATGAATTCTTTTT	0.388													8	87					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165947271	165947271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:165947271C>T	uc002ucx.2	-	28	5884	c.5392G>A	c.(5392-5394)GAA>AAA	p.E1798K	SCN3A_uc010zcy.1_Missense_Mutation_p.E281K|SCN3A_uc002ucy.2_Missense_Mutation_p.E1749K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1749K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1798						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TCAAACTTTTCCCAAACCTCA	0.463													10	69					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166172209	166172209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:166172209C>T	uc002udc.2	+	11	1902	c.1612C>T	c.(1612-1614)CGT>TGT	p.R538C	SCN2A_uc002udd.2_Missense_Mutation_p.R538C|SCN2A_uc002ude.2_Missense_Mutation_p.R538C	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	538					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAAAGGTTTCCGTTTTTCCTT	0.264													6	65					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166179938	166179938	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:166179938G>A	uc002udc.2	+	12	2234	c.1944G>A	c.(1942-1944)GTG>GTA	p.V648V	SCN2A_uc002udd.2_Silent_p.V648V|SCN2A_uc002ude.2_Silent_p.V648V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	648					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATAGCGCTGTGGACTGCAATG	0.592													5	29					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166246141	166246141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:166246141G>A	uc002udc.2	+	27	6115	c.5825G>A	c.(5824-5826)GGA>GAA	p.G1942E	SCN2A_uc002udd.2_Missense_Mutation_p.G1942E|SCN2A_uc002ude.2_Missense_Mutation_p.G1942E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1942					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GAATGTGATGGAACACCCATC	0.398													8	34					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166896092	166896092	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:166896092G>A	uc010zcz.1	-	14	2415	c.2397C>T	c.(2395-2397)ATC>ATT	p.I799I	SCN1A_uc002udo.3_Silent_p.I679I|SCN1A_uc010fpk.2_Silent_p.I651I	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	810	Helical; Name=S2 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CTGCTGTAAAGATCCCAGTGA	0.333													6	30					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167133619	167133619	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:167133619G>A	uc010fpl.2	-	16	3056	c.2715C>T	c.(2713-2715)TCC>TCT	p.S905S	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	916	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAATCAGGAAGGAGTGGAAGA	0.493													7	130					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167288875	167288875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:167288875C>T	uc002udu.1	-	15	2672	c.2545G>A	c.(2545-2547)GAT>AAT	p.D849N	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	849					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TCCTTATTATCCAGATTTTCT	0.378													3	46					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168105922	168105922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:168105922G>A	uc002udx.2	+	8	8038	c.8020G>A	c.(8020-8022)GAA>AAA	p.E2674K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E2499K|XIRP2_uc010fpq.2_Missense_Mutation_p.E2452K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.E20K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2499					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATCAGCTTGCGAAATTAAACA	0.398													4	57					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168105969	168105969	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:168105969G>A	uc002udx.2	+	8	8085	c.8067G>A	c.(8065-8067)CAG>CAA	p.Q2689Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.Q2514Q|XIRP2_uc010fpq.2_Silent_p.Q2467Q|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.Q35Q	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2514					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAACACAACAGAAGAAGTATT	0.363													12	79					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169417792	169417792	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:169417792C>T	uc002ueb.1	+	3	491	c.367C>T	c.(367-369)CAG>TAG	p.Q123*	LASS6_uc002uec.1_Nonsense_Mutation_p.Q123*	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	123	Cytoplasmic (Potential).|Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						AAGACGCAATCAGGAGAAGCC	0.463													4	101					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169571510	169571510	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:169571510G>A	uc002ueb.1	+	7	734	c.610_splice	c.e7-1	p.D204_splice	LASS6_uc002uec.1_Splice_Site_p.D204_splice	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6							endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						CTTTCCTCAAGGACTTTGGCA	0.313													12	140					0	0	1	0	0
LASS6	253782	broad.mit.edu	37	2	169626019	169626019	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:169626019G>A	uc002ueb.1	+	10	1127	c.1003_splice	c.e10-1	p.V335_splice	LASS6_uc002uec.1_Splice_Site_p.V343_splice	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6							endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						CTACTCCACAGGTGTCCAAGG	0.488													8	79					0	0	1	0	0
SPC25	57405	broad.mit.edu	37	2	169727952	169727952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:169727952C>T	uc002uel.2	-	7	795	c.664G>A	c.(664-666)GTT>ATT	p.V222I		NM_020675	NP_065726	Q9HBM1	SPC25_HUMAN	spindle pole body component 25	222	Interaction with the C-terminus of SPBC24.				cell division|chromosome segregation|mitotic prometaphase|mitotic spindle organization	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			central_nervous_system(1)	1						TAATTATAAACCGTGGCAGTA	0.294													11	72					0	0	1	0	0
DHRS9	10170	broad.mit.edu	37	2	169952209	169952209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:169952209C>T	uc002uep.2	+	8	2396	c.892C>T	c.(892-894)CCA>TCA	p.P298S	DHRS9_uc002ueq.2_Missense_Mutation_p.P298S|DHRS9_uc010zdc.1_Missense_Mutation_p.P358S|DHRS9_uc010zdd.1_Missense_Mutation_p.P298S|DHRS9_uc010zde.1_Missense_Mutation_p.P298S	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	298					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						GTCTCACATGCCAGCAGCTTT	0.463													9	68					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170002394	170002394	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:170002394A>G	uc002ues.2	-	70	13064	c.12851T>C	c.(12850-12852)TTA>TCA	p.L4284S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4284	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TATCCAGTATAACTGGTCTTC	0.403													6	38					0	0	1	0	0
PPIG	9360	broad.mit.edu	37	2	170488369	170488369	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:170488369C>T	uc002uez.2	+	11	1075	c.855C>T	c.(853-855)TTC>TTT	p.F285F	PPIG_uc010fpx.2_Silent_p.F270F|PPIG_uc010fpy.2_Silent_p.F278F|PPIG_uc002ufa.2_Silent_p.F285F|PPIG_uc002ufb.2_Silent_p.F285F|PPIG_uc002ufd.2_Silent_p.F282F	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	285					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	AAAATAGATTCCTAATGAGAA	0.313													3	47					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171256768	171256768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:171256768C>T	uc002ufy.2	+	17	2005	c.1862C>T	c.(1861-1863)TCC>TTC	p.S621F	MYO3B_uc002ufv.2_Missense_Mutation_p.S608F|MYO3B_uc010fqb.1_Missense_Mutation_p.S608F|MYO3B_uc002ufz.2_Missense_Mutation_p.S621F|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	621	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCAGCTATTTCCTCTCAACAT	0.403													13	133					0	0	1	0	0
HOXD10	3236	broad.mit.edu	37	2	176982111	176982111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:176982111G>A	uc002ukj.2	+	1	620	c.550G>A	c.(550-552)GGC>AGC	p.G184S		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	184						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		CAACCCTCGTGGCGCGGCCAA	0.582													14	68					0	0	1	0	0
TTC30B	150737	broad.mit.edu	37	2	178416162	178416162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:178416162C>T	uc002uln.2	-	1	1363	c.1330G>A	c.(1330-1332)GAA>AAA	p.E444K	TTC30B_uc010zfc.1_Missense_Mutation_p.E216K	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	444	TPR 6.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			AAGATCTTTTCCACCATTGGA	0.383													9	569					0	0	1	0	0
TTC30A	92104	broad.mit.edu	37	2	178482100	178482100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:178482100C>T	uc002ulo.2	-	1	1595	c.1330G>A	c.(1330-1332)GAA>AAA	p.E444K		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	444	TPR 6.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			AAGACCTTTTCCACCATTGGA	0.388													3	41					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179391873	179391873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179391873C>T	uc010zfg.1	-	312	100362	c.100138G>A	c.(100138-100140)GAA>AAA	p.E33380K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E27075K|TTN_uc010zfi.1_Missense_Mutation_p.E27008K|TTN_uc010zfj.1_Missense_Mutation_p.E26883K|TTN_uc002umq.2_Missense_Mutation_p.E296K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34307							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGTGTTTTCAATGTGGAAC	0.463													3	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179430031	179430031	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179430031T>A	uc010zfg.1	-	275	73348	c.73124A>T	c.(73123-73125)AAC>ATC	p.N24375I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.N18070I|TTN_uc010zfi.1_Missense_Mutation_p.N18003I|TTN_uc010zfj.1_Missense_Mutation_p.N17878I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25302							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCATCTTTGTTACCTTCTTT	0.398													8	46					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179436520	179436520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179436520C>T	uc010zfg.1	-	275	66859	c.66635G>A	c.(66634-66636)CGA>CAA	p.R22212Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R15907Q|TTN_uc010zfi.1_Missense_Mutation_p.R15840Q|TTN_uc010zfj.1_Missense_Mutation_p.R15715Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23139							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACATCTTCTCGGCAGGCGTC	0.418													12	86					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179453612	179453612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179453612C>T	uc010zfg.1	-	253	55360	c.55136G>A	c.(55135-55137)GGG>GAG	p.G18379E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G12074E|TTN_uc010zfi.1_Missense_Mutation_p.G12007E|TTN_uc010zfj.1_Missense_Mutation_p.G11882E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19306							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTGGAGGCCCTGTGCCTAT	0.418													3	24					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599476	179599476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179599476C>T	uc010zfg.1	-	48	11667	c.11443G>A	c.(11443-11445)GAC>AAC	p.D3815N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D476N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4742							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCCGACGTCATTCACTGCT	0.363													8	97					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179600503	179600503	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179600503G>T	uc010zfg.1	-	47	11162	c.10938C>A	c.(10936-10938)TTC>TTA	p.F3646L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.F307L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4573							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCTTTAATGAAATGTGGCT	0.413													4	16					0.0215528	0.0216169	1	1	0
TTN	7273	broad.mit.edu	37	2	179604787	179604787	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179604787C>T	uc010zfh.1	-	46	12884	c.12660G>A	c.(12658-12660)CAG>CAA	p.Q4220Q	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.Q4153Q|TTN_uc010zfj.1_Silent_p.Q4028Q|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTTTAATCTCTGCTCTTCTG	0.468													5	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179610457	179610457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179610457C>T	uc002unb.2	-	46	16894	c.16670G>A	c.(16669-16671)AGA>AAA	p.R5557K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGAACCTTCTTCCTTGGAC	0.423													4	54					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179616001	179616001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179616001C>T	uc002unb.2	-	46	11350	c.11126G>A	c.(11125-11127)AGA>AAA	p.R3709K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATGTTTTTCTAGCCTCCCT	0.343													6	33					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179635244	179635244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179635244C>T	uc010zfg.1	-	35	8499	c.8275G>A	c.(8275-8277)GGA>AGA	p.G2759R	TTN_uc010zfh.1_Missense_Mutation_p.G2713R|TTN_uc010zfi.1_Missense_Mutation_p.G2713R|TTN_uc010zfj.1_Missense_Mutation_p.G2713R|TTN_uc002unb.2_Missense_Mutation_p.G2759R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2759							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAATTGTTCCTTTGACAGAG	0.448													3	88					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179701646	179701646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179701646C>T	uc002unf.1	-	13	2632	c.2575G>A	c.(2575-2577)GGA>AGA	p.G859R	CCDC141_uc002une.1_Missense_Mutation_p.G309R	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	859	Ig-like.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCTGGAAATCCTGTTACTTCA	0.438													4	31					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179732789	179732789	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179732789G>A	uc002unf.1	-	6	870	c.813C>T	c.(811-813)TCC>TCT	p.S271S		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	271							protein binding	p.S271S(1)		ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CGACTCCTAAGGAAAGGGCCA	0.507													4	46					0	0	1	0	0
SESTD1	91404	broad.mit.edu	37	2	179989173	179989174	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:179989173_179989174AC>CT	uc002uni.3	-	11	1234_1235	c.1084_1085GT>AG	c.(1084-1086)GTT>AGT	p.V362S	SESTD1_uc002unh.3_5'UTR	NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	362	Spectrin 1.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCGATAACAAACATCACTAAGT	0.416													7	66					0	0	1	0	0
SESTD1	91404	broad.mit.edu	37	2	180011162	180011162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:180011162G>A	uc002uni.3	-	8	754	c.604C>T	c.(604-606)CCA>TCA	p.P202S		NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	202					regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCAACCGATGGAAGAAAGTTT	0.289													4	77					0	0	1	0	0
NEUROD1	4760	broad.mit.edu	37	2	182542564	182542564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:182542564G>A	uc002uof.2	-	2	1260	c.1024C>T	c.(1024-1026)CAT>TAT	p.H342Y	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	342					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			ACTCGCTCATGATGTGAATGG	0.522													6	155					0	0	1	0	0
DNAJC10	54431	broad.mit.edu	37	2	183606036	183606036	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:183606036C>G	uc002uow.1	+	13	1559	c.1144C>G	c.(1144-1146)CCT>GCT	p.P382A	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.P336A|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	382					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TTCAAATGATCCTGAGCTGAA	0.308													4	26					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800820	185800820	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:185800820T>A	uc002uph.2	+	4	1291	c.697T>A	c.(697-699)TTC>ATC	p.F233I		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	233						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AGCTGCAGCCTTCTCTGAATA	0.453													5	76					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803390	185803390	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:185803390C>T	uc002uph.2	+	4	3861	c.3267C>T	c.(3265-3267)TCC>TCT	p.S1089S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1089						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGCAGCAGTCCTTATGTTCTA	0.368													9	93					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	186697847	186697847	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:186697847G>A	uc002upm.2	+	7		c.3700G>A			uc010zfu.1_Missense_Mutation_p.G1371E					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		TCCAAACAAGGATCTAAAATG	0.333													6	43					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187541949	187541949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:187541949C>T	uc002upq.2	+	30	3353	c.3077C>T	c.(3076-3078)CCA>CTA	p.P1026L	ITGAV_uc010frs.2_Missense_Mutation_p.P990L|ITGAV_uc010zfv.1_Missense_Mutation_p.P980L	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	1026	Cytoplasmic (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		CGGGTCCGGCCACCTCAAGAA	0.378													3	23					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189852823	189852823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:189852823C>T	uc002uqj.1	+	6	662	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	182	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCAGGCCCTCCCGGTCCCCCT	0.398													7	57					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189918898	189918899	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:189918898_189918899GG>AA	uc002uqk.2	-	36	2706_2707	c.2431_2432CC>TT	c.(2431-2433)CCT>TTT	p.P811F	COL5A2_uc010frx.2_Missense_Mutation_p.P387F	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	811				PT -> LL (in Ref. 1; CAA75002 and 9; CAA28454).	axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TTCTCCAGTAGGACCTGCCGGA	0.386													8	74					0	0	1	0	0
SLC40A1	30061	broad.mit.edu	37	2	190428937	190428937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:190428937G>A	uc002uqp.3	-	7	1126	c.775C>T	c.(775-777)CCC>TCC	p.P259S		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	259					anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			CCCTCCAGGGGTTTTGGCTCA	0.408													4	82					0	0	1	0	0
MSTN	2660	broad.mit.edu	37	2	190924966	190924966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:190924966C>T	uc002urp.2	-	2	702	c.569G>A	c.(568-570)CGA>CAA	p.R190Q		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	190					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTTCAGAGATCGGATTCCAGT	0.428													14	102					0	0	1	0	0
MFSD6	54842	broad.mit.edu	37	2	191301865	191301865	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:191301865C>T	uc002urz.2	+	3	1434	c.1110C>T	c.(1108-1110)ATC>ATT	p.I370I		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	370	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2						ATTACCAGATCGTCTTCATCG	0.517													3	35					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701440	192701440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:192701440C>T	uc002utb.2	-	2	817	c.487G>A	c.(487-489)GAA>AAA	p.E163K		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	163						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	ATCTCATTTTCCTCCTGAAAA	0.468													4	21					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196636423	196636423	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196636423G>A	uc002utj.3	-	61	11495	c.11394C>T	c.(11392-11394)ACC>ACT	p.T3798T	DNAH7_uc002uti.3_Silent_p.T281T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3798					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATCTCTTATGGTCTTCAGTA	0.363													7	154					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196664073	196664073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196664073G>A	uc002utj.3	-	55	10401	c.10300C>T	c.(10300-10302)CTC>TTC	p.L3434F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3434	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCAGGAGAGAGCACGAAAATC	0.423													6	109					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196726633	196726633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196726633C>T	uc002utj.3	-	42	7645	c.7544G>A	c.(7543-7545)CGA>CAA	p.R2515Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2515	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTCCAAGAATCGTGAGGCAAC	0.378													5	41					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196729610	196729610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196729610C>T	uc002utj.3	-	41	6870	c.6769G>A	c.(6769-6771)GAT>AAT	p.D2257N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2257					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACCATGCCATCATTATCAAAA	0.393													5	77					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196746662	196746662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196746662G>A	uc002utj.3	-	36	5919	c.5818C>T	c.(5818-5820)CCT>TCT	p.P1940S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1940	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACATCTTTAGGAATTGGAGGA	0.338													10	69					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196749422	196749422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196749422G>A	uc002utj.3	-	35	5751	c.5650C>T	c.(5650-5652)CGA>TGA	p.R1884*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1884					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTCGAGTTCGATCTGAAATT	0.358													6	79					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196799344	196799344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:196799344C>T	uc002utj.3	-	21	3543	c.3442G>A	c.(3442-3444)GAG>AAG	p.E1148K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1148	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATAACTCTCTCTAATTCAACC	0.368													16	164					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183364	197183364	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:197183364G>A	uc002utm.1	-	9	2433	c.2250C>T	c.(2248-2250)GCC>GCT	p.A750A	HECW2_uc002utl.1_Silent_p.A394A	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	750	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTGGGCTCTCGGCAGCAGCTG	0.657													8	55					0	0	1	0	0
PGAP1	80055	broad.mit.edu	37	2	197757952	197757952	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:197757952C>T	uc002utw.2	-	8	1059	c.945G>A	c.(943-945)AAG>AAA	p.K315K	PGAP1_uc002utx.2_Silent_p.K141K|PGAP1_uc002uty.1_Silent_p.K315K|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_Silent_p.K141K	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	315	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity	p.K315R(1)		ovary(3)|central_nervous_system(1)	4						ACAGTTTCTTCTTGGAATTTT	0.313													3	39					0	0	1	0	0
RFTN2	130132	broad.mit.edu	37	2	198460726	198460726	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:198460726G>A	uc002uuo.3	-	8	1624	c.1222C>T	c.(1222-1224)CAA>TAA	p.Q408*		NM_144629	NP_653230	Q52LD8	RFTN2_HUMAN	raftlin family member 2	408						plasma membrane					0						TCTGGTGTTTGAGCAGCTGAA	0.338													5	79					0	0	1	0	0
FZD7	8324	broad.mit.edu	37	2	202900182	202900183	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:202900182_202900183CC>TT	uc002uyw.1	+	1	873_874	c.812_813CC>TT	c.(811-813)ACC>ATT	p.T271I		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	271	Helical; Name=1; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						ACGCTCTTTACCGTTCTCACCT	0.639											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	282					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190148	209190148	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:209190148C>T	uc002vcz.2	+	20	2771	c.2613C>T	c.(2611-2613)TCC>TCT	p.S871S	PIKFYVE_uc010fun.1_Silent_p.S552S|PIKFYVE_uc002vcy.1_Silent_p.S815S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	871					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TAGAAATATCCTTTCTCATGG	0.438													5	56					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190193	209190193	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:209190193C>T	uc002vcz.2	+	20	2816	c.2658C>T	c.(2656-2658)AAC>AAT	p.N886N	PIKFYVE_uc010fun.1_Silent_p.N567N|PIKFYVE_uc002vcy.1_Silent_p.N830N	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	886					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TAATGCAAAACCCTTCATTCC	0.468													7	65					0	0	1	0	0
ACADL	33	broad.mit.edu	37	2	211082789	211082789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211082789C>T	uc002vdz.3	-	3	499	c.271G>A	c.(271-273)GAA>AAA	p.E91K	ACADL_uc010zjg.1_Missense_Mutation_p.E91K	NM_001608	NP_001599	P28330	ACADL_HUMAN	long-chain acyl-CoA dehydrogenase precursor	91					carnitine catabolic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial matrix	long-chain-acyl-CoA dehydrogenase activity|palmitoyl-CoA oxidase activity				0		Renal(323;0.202)		Epithelial(149;0.00631)|Lung(261;0.0438)|LUSC - Lung squamous cell carcinoma(261;0.0466)|all cancers(144;0.0621)		CCAGCTTTTTCCCAAACCTCC	0.383													4	55					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211158520	211158520	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211158520T>A	uc002vec.2	-	5	612	c.483A>T	c.(481-483)GAA>GAT	p.E161D	MYL1_uc002veb.2_Missense_Mutation_p.E117D	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	161	EF-hand 2.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		CTTTCATCTTTTCACCTGATG	0.438													7	109					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211163209	211163209	+	Missense_Mutation	SNP	C	T	T	rs141590730	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211163209C>T	uc002vec.2	-	3	368	c.239G>A	c.(238-240)CGA>CAA	p.R80Q	MYL1_uc002veb.2_Missense_Mutation_p.R36Q	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	80	EF-hand 1.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GCCCAGAGCTCGAAGGACATC	0.458													3	54					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211438075	211438075	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211438075C>T	uc002vee.3	+	2	312	c.180C>T	c.(178-180)TCC>TCT	p.S60S	CPS1_uc010fur.2_Silent_p.S66S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	60	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AAGGTTACTCCTTTGGCCATC	0.418													12	119					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211513246	211513246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211513246G>A	uc002vee.3	+	27	3518	c.3386G>A	c.(3385-3387)AGG>AAG	p.R1129K	CPS1_uc010fur.2_Missense_Mutation_p.R1135K|CPS1_uc010fus.2_Missense_Mutation_p.R678K	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1129	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TGCTTGTTGAGGCCTTCCTAT	0.338													7	121					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211542647	211542647	+	Missense_Mutation	SNP	C	T	T	rs138125466		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:211542647C>T	uc002vee.3	+	38	4573	c.4441C>T	c.(4441-4443)CGC>TGC	p.R1481C	CPS1_uc010fur.2_Missense_Mutation_p.R1487C|CPS1_uc010fus.2_Missense_Mutation_p.R1030C	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1481					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GCAGAAATCTCGCAAGGTGGA	0.423													12	256					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212488710	212488710	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:212488710C>T	uc002veg.1	-	18	2237	c.2139G>A	c.(2137-2139)TTG>TTA	p.L713L	ERBB4_uc002veh.1_Silent_p.L713L|ERBB4_uc010zji.1_Silent_p.L703L|ERBB4_uc010zjj.1_Silent_p.L703L|ERBB4_uc010fut.1_Silent_p.L713L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	713	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAGTTTCTTTCAAAATACGAA	0.403										TSP Lung(8;0.080)			8	58					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	214012511	214012511	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:214012511C>T	uc002vem.2	-	3	229	c.60G>A	c.(58-60)AGG>AGA	p.R20R	IKZF2_uc010fuu.2_Silent_p.R20R|IKZF2_uc002vej.2_5'UTR|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Silent_p.R20R|IKZF2_uc002vel.2_5'UTR|IKZF2_uc010fuw.2_5'UTR|IKZF2_uc010fux.2_5'UTR|IKZF2_uc010fuy.2_Silent_p.R20R|IKZF2_uc002ven.2_Silent_p.R20R	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	20					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		TGGAGTGCTCCCTTTCGGGTG	0.388													21	218					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215815728	215815728	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:215815728T>C	uc002vew.2	-	45	6947	c.6727A>G	c.(6727-6729)AGA>GGA	p.R2243G	ABCA12_uc002vev.2_Missense_Mutation_p.R1925G|ABCA12_uc010zjn.1_Missense_Mutation_p.R1170G	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2243					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTCTCAACTCTTAATCTCTCA	0.378													11	148					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215866417	215866417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:215866417G>A	uc002vew.2	-	21	2948	c.2728C>T	c.(2728-2730)CAG>TAG	p.Q910*	ABCA12_uc002vev.2_Nonsense_Mutation_p.Q592*|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	910					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GTGTTAAGCTGATCGATGATG	0.363													3	50					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215890453	215890453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:215890453G>A	uc002vew.2	-	11	1451	c.1231C>T	c.(1231-1233)CGC>TGC	p.R411C	ABCA12_uc002vev.2_Missense_Mutation_p.R93C|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	411					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GAACCATTGCGAAGAAAAGAT	0.303													3	58					0	0	1	0	0
MARCH4	57574	broad.mit.edu	37	2	217234553	217234553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:217234553G>A	uc002vgb.2	-	1	2198	c.431C>T	c.(430-432)ACC>ATC	p.T144I		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	144						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		GCGATCCTCGGTCTTCTCCTT	0.592													4	62					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218683409	218683409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:218683409C>T	uc002vgt.2	-	24	3732	c.3334G>A	c.(3334-3336)GAG>AAG	p.E1112K	TNS1_uc002vgr.2_Missense_Mutation_p.E1099K|TNS1_uc002vgs.2_Missense_Mutation_p.E1091K|TNS1_uc010zjv.1_Missense_Mutation_p.E1091K	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1112	Ser-rich.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		AAGCCAGACTCCAACAGAGGC	0.627													6	87					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	219000424	219000424	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:219000424G>A	uc002vgz.1	+	4	1125	c.900G>A	c.(898-900)GAG>GAA	p.E300E	CXCR2_uc002vha.1_Silent_p.E300E|CXCR2_uc002vhb.1_Silent_p.E300E	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	300	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						ATGCCACCGAGATTCTGGGCA	0.567													9	83					0	0	1	0	0
CXCR1	3577	broad.mit.edu	37	2	219029119	219029119	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:219029119C>T	uc002vhc.2	-	2	935	c.816G>A	c.(814-816)GTG>GTA	p.V272V		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	272	Extracellular (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						TCTCCTGGATCACCTGGGTCC	0.582													6	80					0	0	1	0	0
TTLL4	9654	broad.mit.edu	37	2	219603768	219603768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:219603768C>T	uc002viy.2	+	3	1739	c.1369C>T	c.(1369-1371)CCT>TCT	p.P457S	TTLL4_uc010zkl.1_Missense_Mutation_p.P292S|TTLL4_uc010fvx.2_Missense_Mutation_p.P457S	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	457					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TCCCCCTTTTCCTCAAACTCT	0.567													4	45					0	0	1	0	0
CYP27A1	1593	broad.mit.edu	37	2	219676954	219676954	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:219676954C>T	uc002viz.3	+	3	890	c.456C>T	c.(454-456)CAC>CAT	p.H152H		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	152					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	GGGAAGGACACCACTGGTACC	0.542													5	57					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219886646	219886646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:219886646C>T	uc002vjl.1	-	18	3070	c.2986G>A	c.(2986-2988)GAA>AAA	p.E996K	CCDC108_uc002vjm.3_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	996						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCTCCTTTTCCTTTGCCTGG	0.592													14	146					0	0	1	0	0
ATG9A	79065	broad.mit.edu	37	2	220088624	220088625	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:220088624_220088625CC>TT	uc002vke.1	-	9	1571_1572	c.1385_1386GG>AA	c.(1384-1386)CGG>CAA	p.R462Q	ATG9A_uc002vkd.1_Intron|ATG9A_uc002vkf.1_Missense_Mutation_p.R462Q	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	462	Lumenal (By similarity).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAAACTCGTCCCGGGTCTGCGA	0.614													13	156					0	0	1	0	0
TUBA4B	80086	broad.mit.edu	37	2	220135009	220135009	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:220135009C>T	uc002vkv.1	+	3	309	c.144C>T	c.(142-144)ACC>ACT	p.T48T	TUBA4B_uc002vku.2_RNA	NR_003063				RecName: Full=Putative tubulin-like protein alpha-4B; AltName: Full=Alpha-tubulin 4B;												0						GCCACTACACCATTGGGAAGG	0.532													3	23					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446848	226446848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:226446848G>A	uc002voe.2	+	4	890	c.715G>A	c.(715-717)GAG>AAG	p.E239K	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.E9K	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	239										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGGAGACCCCGAGGAAGAGGA	0.587													14	127					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	228004921	228004921	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:228004921T>C	uc010zlt.1	-	4	802	c.148A>G	c.(148-150)AGA>GGA	p.R50G		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	50	7S domain.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GAGCAATCTCTTCCTCCACAA	0.413													7	94					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228169719	228169719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:228169719G>A	uc002vom.1	+	47	4334	c.4172G>A	c.(4171-4173)GGT>GAT	p.G1391D	COL4A3_uc002von.1_Missense_Mutation_p.G1391D|COL4A3_uc002voo.1_Missense_Mutation_p.G1391D|COL4A3_uc002vop.1_Missense_Mutation_p.G1391D|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_5'Flank	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1391	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGGCCAAGAGGTAAGCCAGGC	0.388													4	23					0	0	1	0	0
WDR69	164781	broad.mit.edu	37	2	228750084	228750084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:228750084G>A	uc002vpn.1	+	2	137	c.58G>A	c.(58-60)GAA>AAA	p.E20K	WDR69_uc010zlw.1_Missense_Mutation_p.E5K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	20										breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		GTTGGAATATGAAAAACATGG	0.338													4	60					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882788	228882788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:228882788C>T	uc002vpq.2	-	7	2829	c.2782G>A	c.(2782-2784)GAC>AAC	p.D928N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D928N|SPHKAP_uc010zlx.1_Missense_Mutation_p.D928N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	928						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCCGCAAAGTCTGTAATGCAG	0.478													6	132					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886431	228886431	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:228886431C>T	uc002vpq.2	-	6	740	c.693G>A	c.(691-693)AGG>AGA	p.R231R	SPHKAP_uc002vpp.2_Silent_p.R231R|SPHKAP_uc010zlx.1_Silent_p.R231R	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	231						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCTCACCGTTCCTAGATTCAT	0.453													5	52					0	0	1	0	0
TRIP12	9320	broad.mit.edu	37	2	230656937	230656937	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:230656937C>A	uc002vpw.1	-	27	4031	c.3922G>T	c.(3922-3924)GGA>TGA	p.G1308*	TRIP12_uc002vpx.1_Nonsense_Mutation_p.G1356*|TRIP12_uc002vpy.1_Nonsense_Mutation_p.G1038*	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1308					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		CTTACTCTTCCATACCCTGAA	0.353													6	100					2.17888e-05	2.19571e-05	1	1	0
NCL	4691	broad.mit.edu	37	2	232321448	232321448	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:232321448G>A	uc002vru.2	-	11	1740	c.1599C>T	c.(1597-1599)TTC>TTT	p.F533F	SNORA75_uc002vrv.1_5'Flank|SNORD20_uc002vrw.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	533	RRM 3.				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		TAGCGTCTTCGAATGAAGCAA	0.438													10	66					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233274432	233274432	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:233274432C>T	uc002vss.3	+	11	1502	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	483					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	TCATGGCCTTCGCCGCCTGCC	0.751													3	21					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233349582	233349582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:233349582C>T	uc002vsv.2	-	5	1193	c.988G>A	c.(988-990)GAC>AAC	p.D330N	ECEL1_uc010fya.1_Missense_Mutation_p.D330N|ECEL1_uc010fyb.1_Missense_Mutation_p.D37N	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	330	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CGCCGTAGGTCGTCATGCTCT	0.617													10	124					0	0	1	0	0
NGEF	25791	broad.mit.edu	37	2	233839552	233839552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:233839552C>T	uc002vts.2	-	2	297	c.49G>A	c.(49-51)GCA>ACA	p.A17T		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	17	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TGATCACTTGCTGATTTCCTC	0.453													3	89					0	0	1	0	0
ATG16L1	55054	broad.mit.edu	37	2	234173762	234173762	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:234173762T>C	uc002vty.2	+	5	871	c.614T>C	c.(613-615)CTT>CCT	p.L205P	ATG16L1_uc002vtx.1_Intron|ATG16L1_uc002vua.2_Missense_Mutation_p.L205P|ATG16L1_uc002vub.2_Missense_Mutation_p.L82P|ATG16L1_uc002vtz.2_Intron|ATG16L1_uc002vud.3_Missense_Mutation_p.L121P	NM_030803	NP_110430	Q676U5	A16L1_HUMAN	APG16 autophagy 16-like isoform 1	205	Potential.				autophagic vacuole assembly|protein homooligomerization|protein transport	autophagic vacuole|pre-autophagosomal structure membrane	protein binding				0		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0539)		Epithelial(121;1.53e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000379)|LUSC - Lung squamous cell carcinoma(224;0.00619)|Lung(119;0.00732)|GBM - Glioblastoma multiforme(43;0.11)		GCCAATCGGCTTAATGCAGAG	0.458													6	84					0	0	1	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526407	234526407	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:234526407G>A	uc002vup.2	+	1	117	c.54G>A	c.(52-54)CTG>CTA	p.L18L	UGT1A8_uc010zmv.1_Silent_p.L18L	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	18					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCTGCTGCTGACCTGTGGCT	0.577													14	84					0	0	1	0	0
UGT1A6	54578	broad.mit.edu	37	2	234602172	234602172	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:234602172T>C	uc002vuv.3	+	1	661	c.522T>C	c.(520-522)TTT>TTC	p.F174F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Silent_p.F174F	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	174					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		TCAGGGGTTTTCCGTGTTCCC	0.502													4	133					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238285582	238285582	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:238285582A>G	uc002vwl.2	-	7	3188	c.2903T>C	c.(2902-2904)GTT>GCT	p.V968A	COL6A3_uc002vwo.2_Missense_Mutation_p.V762A|COL6A3_uc010znj.1_Missense_Mutation_p.V361A|COL6A3_uc002vwq.2_Missense_Mutation_p.V762A|COL6A3_uc002vwr.2_Missense_Mutation_p.V561A|COL6A3_uc010znk.1_Missense_Mutation_p.V768A	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	968	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GAAAGGCACAACCCCACTCTG	0.562													8	158					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238287622	238287622	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:238287622G>C	uc002vwl.2	-	6	2439	c.2154C>G	c.(2152-2154)AAC>AAG	p.N718K	COL6A3_uc002vwo.2_Missense_Mutation_p.N512K|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.N512K|COL6A3_uc002vwr.2_Missense_Mutation_p.N311K|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	718	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTGAGCCTGTGTTCAGGCCCG	0.552													7	29					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239040037	239040037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:239040037G>A	uc002vxq.3	+	9	2792	c.2682G>A	c.(2680-2682)TGG>TGA	p.W894*	ESPNL_uc010fyw.2_Nonsense_Mutation_p.W590*	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	894										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CCCACGGCTGGGAGGCTGTGC	0.687													3	12					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241715278	241715278	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:241715278C>T	uc002vzy.2	-	11	1094	c.948G>A	c.(946-948)CGG>CGA	p.R316R	KIF1A_uc010fzk.2_Silent_p.R316R|KIF1A_uc002vzz.1_Silent_p.R316R	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	316	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CCAGGTTTTCCCGGAGGAGCC	0.572													4	66					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241973164	241973164	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:241973164C>T	uc002wah.1	+	3	514	c.514C>T	c.(514-516)CAG>TAG	p.Q172*		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	172	NIDO.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CAACACATTCCAGACTGTGCT	0.617													3	32					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242046056	242046057	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:242046056_242046057CC>TT	uc002wao.1	-	18	3988_3989	c.3896_3897GG>AA	c.(3895-3897)GGG>GAA	p.G1299E	PASK_uc010zol.1_Missense_Mutation_p.G1113E|PASK_uc010zom.1_Missense_Mutation_p.G1264E|PASK_uc010fzl.1_Missense_Mutation_p.G1306E|PASK_uc010zon.1_Missense_Mutation_p.G1080E	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1299					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GAACGGGGCCCCCACAAAGCTC	0.569													9	93					0	0	1	0	0
SEPT2	4735	broad.mit.edu	37	2	242285599	242285599	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:242285599C>T	uc002wbc.2	+	11	1282	c.861C>T	c.(859-861)CTC>CTT	p.L287L	SEPT2_uc002wbd.2_Silent_p.L287L|SEPT2_uc002wbf.2_Silent_p.L287L|SEPT2_uc002wbg.2_Silent_p.L287L|SEPT2_uc002wbh.2_Silent_p.L297L|SEPT2_uc010zop.1_Silent_p.L322L	NM_001008491	NP_001008491	Q15019	SEPT2_HUMAN	septin 2	287					cell division|mitosis	actin cytoskeleton|cleavage furrow|condensed chromosome kinetochore|midbody|nucleolus|septin complex|spindle	GTP binding			central_nervous_system(1)	1		all_cancers(19;7.62e-41)|all_epithelial(40;1.71e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.24e-34)|all cancers(36;7.15e-32)|OV - Ovarian serous cystadenocarcinoma(60;1.21e-15)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;3.16e-06)|Lung(119;7.81e-05)|LUSC - Lung squamous cell carcinoma(224;0.000742)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0889)		TGCAGGATCTCCAGGAGGTGA	0.478													8	71					0	0	1	0	0
FARP2	9855	broad.mit.edu	37	2	242312590	242312590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:242312590C>T	uc002wbi.1	+	2	185	c.68C>T	c.(67-69)CCT>CTT	p.P23L	FARP2_uc010zoq.1_Missense_Mutation_p.P23L|FARP2_uc010zor.1_Missense_Mutation_p.P23L	NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	23					axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		GCCCAGACCCCTGTGGGAGTT	0.522													8	63					0	0	1	0	0
ING5	84289	broad.mit.edu	37	2	242644105	242644105	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr2:242644105C>T	uc002wcd.2	+	2	100	c.75C>T	c.(73-75)TTC>TTT	p.F25F	ING5_uc002wcc.1_Silent_p.F25F	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	25					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		AGAGGAACTTCCAGCTGATGC	0.512													16	152					0	0	1	0	0
RBCK1	10616	broad.mit.edu	37	20	400039	400039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:400039C>T	uc002wdp.3	+	5	1202	c.509C>T	c.(508-510)CCA>CTA	p.P170L	RBCK1_uc010zpl.1_Missense_Mutation_p.P170L|RBCK1_uc010zpm.1_RNA|RBCK1_uc002wdq.3_Missense_Mutation_p.P128L|RBCK1_uc010fzy.2_RNA|RBCK1_uc002wdr.3_Nonsense_Mutation_p.Q54*	NM_031229	NP_112506	Q9BYM8	HOIL1_HUMAN	RanBP-type and C3HC4-type zinc finger containing	170	Interaction with IRF3.|Interaction with TAB2.				interspecies interaction between organisms|negative regulation of NF-kappaB transcription factor activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|proteasomal ubiquitin-dependent protein catabolic process|protein linear polyubiquitination|T cell receptor signaling pathway	LUBAC complex	protein binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0		all_epithelial(17;0.172)|Lung NSC(37;0.191)|Breast(17;0.231)				CCTCTGGAGCCAGGCCCCCCA	0.672													6	37					0	0	1	0	0
SCRT2	85508	broad.mit.edu	37	20	644918	644918	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:644918G>A	uc002wec.2	-	2	899	c.321C>T	c.(319-321)TCC>TCT	p.S107S	SRXN1_uc002web.2_Intron	NM_033129	NP_149120	Q9NQ03	SCRT2_HUMAN	scratch 2 protein	107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGGCGTCCATGGAGTAGCTGT	0.473													3	26					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1616848	1616848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:1616848G>A	uc002wfm.1	-	3	799	c.734C>T	c.(733-735)TCT>TTT	p.S245F	SIRPG_uc002wfn.1_Missense_Mutation_p.S245F|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	245	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GATGGCCTCAGACAAGTTGGC	0.627													7	66					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2308916	2308916	+	Missense_Mutation	SNP	C	T	T	rs142429871		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2308916C>T	uc002wfx.3	+	9	1335	c.1238C>T	c.(1237-1239)TCC>TTC	p.S413F		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	413					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGGAAGAATTCCGTGAACAGT	0.542													9	89					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2321117	2321117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2321117C>T	uc002wfx.3	+	13	2069	c.1972C>T	c.(1972-1974)CGT>TGT	p.R658C		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	658					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GTCCCGGGTCCGTTTTGATAT	0.602													17	133					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2378692	2378692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2378692G>A	uc002wfy.1	+	5	733	c.672G>A	c.(670-672)ATG>ATA	p.M224I	TGM6_uc010gal.1_Missense_Mutation_p.M224I	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	224					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	TCAGTGCCATGGTGAGAAGCC	0.577													7	117					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2413173	2413173	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2413173C>T	uc002wfy.1	+	13	2066	c.2005C>T	c.(2005-2007)CAG>TAG	p.Q669*	TGM6_uc010gal.1_Missense_Mutation_p.P624L	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	669					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GGCCTCAGTCCAGTTTGACAT	0.587													7	92					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2596845	2596845	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2596845G>T	uc002wgf.1	+	15	1950	c.1935G>T	c.(1933-1935)ATG>ATT	p.M645I	TMC2_uc002wgg.1_Missense_Mutation_p.M629I	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	645	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						ACCAAGGAATGATCTGGTGAG	0.224													4	61					0.00198382	0.00199319	1	1	0
TMC2	117532	broad.mit.edu	37	20	2604936	2604936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2604936G>A	uc002wgf.1	+	17	2215	c.2200G>A	c.(2200-2202)GAT>AAT	p.D734N	TMC2_uc002wgg.1_Missense_Mutation_p.D718N	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	734	Extracellular (Potential).					integral to membrane				ovary(3)	3						CAGAATGTACGATGTCCTCCA	0.507													4	73					0	0	1	0	0
CPXM1	56265	broad.mit.edu	37	20	2775066	2775066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:2775066C>T	uc002wgu.2	-	14	2039	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N	CPXM1_uc010gas.2_Missense_Mutation_p.D585N	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	659					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						CGCCAATAATCCCCGCCCCAC	0.597													6	73					0	0	1	0	0
SLC4A11	83959	broad.mit.edu	37	20	3209758	3209758	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:3209758C>T	uc002wig.2	-	15	2097	c.2049G>A	c.(2047-2049)GTG>GTA	p.V683V	SLC4A11_uc010zqe.1_Silent_p.V710V|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.V667V	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	683	Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						CCGGTGCATTCACCAAGGCGG	0.667													3	27					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3571950	3571950	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:3571950C>A	uc002wim.2	+	19	3409	c.3319C>A	c.(3319-3321)CAG>AAG	p.Q1107K	ATRN_uc002wil.2_Missense_Mutation_p.Q1107K	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	1107	Extracellular (Potential).|Laminin EGF-like 1.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AGGGAAATGTCAGCGTAAGTC	0.463													16	144					9.7654e-05	9.8335e-05	1	1	0
SIGLEC1	6614	broad.mit.edu	37	20	3686412	3686412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:3686412C>T	uc002wja.2	-	3	685	c.685G>A	c.(685-687)GAG>AAG	p.E229K	SIGLEC1_uc002wiz.3_Missense_Mutation_p.E229K|SIGLEC1_uc002wjc.2_Missense_Mutation_p.E140K	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	229	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						AGGTGAATCTCGCTCTGAGCC	0.622													17	108					0	0	1	0	0
PANK2	80025	broad.mit.edu	37	20	3870338	3870338	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:3870338C>T	uc002wkc.2	+	1	597	c.591C>T	c.(589-591)TCC>TCT	p.S197S	uc002wjz.1_5'Flank|uc002wka.1_5'Flank|PANK2_uc002wkb.2_Intron|PANK2_uc010gbd.1_RNA|PANK2_uc002wkd.2_RNA|PANK2_uc002wke.2_5'Flank|PANK2_uc002wkf.2_5'Flank	NM_153638	NP_705902	Q9BZ23	PANK2_HUMAN	pantothenate kinase 2 isoform 1 preproprotein	197					cell death|coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial intermembrane space|nucleus	ATP binding|pantothenate kinase activity|protein binding				0						CCTCGGTCTCCCGCCAGCGCG	0.756													3	34					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5897539	5897539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:5897539C>T	uc002wmg.2	+	3	470	c.164C>T	c.(163-165)CCT>CTT	p.P55L	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	55						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCCATCACCCCTGAGTGCCGC	0.567													14	127					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8626763	8626763	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:8626763G>A	uc002wnb.2	+	5	402	c.399G>A	c.(397-399)GAG>GAA	p.E133E	PLCB1_uc010zrb.1_Silent_p.E32E|PLCB1_uc010gbv.1_Silent_p.E133E|PLCB1_uc002wmz.1_Silent_p.E133E|PLCB1_uc002wna.2_Silent_p.E133E|PLCB1_uc002wnc.1_Silent_p.E32E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	133					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GGACAAATGAGGTTTTCAGTT	0.408													12	74					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8665662	8665662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:8665662G>A	uc002wnb.2	+	10	949	c.946G>A	c.(946-948)GAA>AAA	p.E316K	PLCB1_uc010zrb.1_Missense_Mutation_p.E215K|PLCB1_uc002wna.2_Missense_Mutation_p.E316K|PLCB1_uc002wnc.1_Missense_Mutation_p.E215K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	316	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GGATTTGAATGAAGACATGTC	0.418													17	170					0	0	1	0	0
C20orf103	24141	broad.mit.edu	37	20	9510461	9510461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:9510461G>A	uc002wni.1	+	6	1066	c.837G>A	c.(835-837)ATG>ATA	p.M279I	C20orf103_uc010zrc.1_Missense_Mutation_p.M235I	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	279	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			ATAAGCACATGGGCTAGAGGC	0.522													9	88					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9546694	9546694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:9546694C>T	uc002wnl.2	-	6	1873	c.1328G>A	c.(1327-1329)GGA>GAA	p.G443E	PAK7_uc002wnk.2_Missense_Mutation_p.G443E|PAK7_uc002wnj.2_Missense_Mutation_p.G443E|PAK7_uc010gby.1_Missense_Mutation_p.G443E	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	443	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCTGGGGTCTCCTGGGCTGAC	0.607													8	131					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561341	9561341	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:9561341C>T	uc002wnl.2	-	5	986	c.441G>A	c.(439-441)AGG>AGA	p.R147R	PAK7_uc002wnk.2_Silent_p.R147R|PAK7_uc002wnj.2_Silent_p.R147R|PAK7_uc010gby.1_Silent_p.R147R	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	147	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GACTCTTCTCCCTGTACTTTT	0.517													10	146					0	0	1	0	0
KIF16B	55614	broad.mit.edu	37	20	16359754	16359754	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:16359754G>A	uc002wpg.1	-	19	3051	c.2893C>T	c.(2893-2895)CAG>TAG	p.Q965*	KIF16B_uc002wpe.1_Nonsense_Mutation_p.Q347*|KIF16B_uc002wpf.1_Nonsense_Mutation_p.Q347*|KIF16B_uc010gch.1_Nonsense_Mutation_p.Q965*|KIF16B_uc010gci.1_Nonsense_Mutation_p.Q965*|KIF16B_uc010gcj.1_Nonsense_Mutation_p.Q976*	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	965	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TTTTGCAGCTGGTTTGCATTG	0.443													10	123					0	0	1	0	0
ZNF133	7692	broad.mit.edu	37	20	18297413	18297413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:18297413C>T	uc010gcq.2	+	5	2223	c.1918C>T	c.(1918-1920)CCT>TCT	p.P640S	ZNF133_uc010zrv.1_Missense_Mutation_p.P643S|ZNF133_uc010zrw.1_Missense_Mutation_p.P577S|ZNF133_uc010gcr.2_Missense_Mutation_p.P640S|ZNF133_uc010zrx.1_Missense_Mutation_p.P545S|ZNF133_uc002wql.3_Missense_Mutation_p.P639S|ZNF133_uc010gcs.2_Missense_Mutation_p.P639S|ZNF133_uc010zry.1_Missense_Mutation_p.P545S|ZNF133_uc002wqm.2_Missense_Mutation_p.P640S	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	640						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GCAGCCCGACCCTGAGCCGTG	0.542													8	102					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665885	19665885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:19665885G>A	uc002wrl.2	+	12	1401	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	402	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ACGGAGGGACGATGTTGTGGC	0.393													5	48					0	0	1	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033087	20033087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:20033087G>A	uc002wrs.2	-	2	415	c.383C>T	c.(382-384)TCC>TTC	p.S128F	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.S116F	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	128					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AAACAAACAGGATCTCGGAAC	0.587													20	79					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20037364	20037364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:20037364G>A	uc002wru.2	+	2	143	c.67G>A	c.(67-69)GAT>AAT	p.D23N	C20orf26_uc010gcw.1_Intron|C20orf26_uc010zse.1_Missense_Mutation_p.D23N|C20orf26_uc010zsf.1_Missense_Mutation_p.D23N|CRNKL1_uc002wrs.2_5'Flank|CRNKL1_uc002wrt.1_5'Flank	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	23										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGAATCACAGGATGTTTATTG	0.353													8	120					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20055886	20055886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:20055886C>T	uc002wru.2	+	5	501	c.425C>T	c.(424-426)TCC>TTC	p.S142F	C20orf26_uc010gcw.1_Missense_Mutation_p.S96F|C20orf26_uc010zse.1_Missense_Mutation_p.S142F|C20orf26_uc010zsf.1_Missense_Mutation_p.S142F	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	142										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ATCGTGCCATCCTACATGAGC	0.498													6	88					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20150030	20150030	+	Silent	SNP	C	T	T	rs150673228	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:20150030C>T	uc002wru.2	+	13	1387	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F	C20orf26_uc010zse.1_Silent_p.F417F|C20orf26_uc010zsf.1_Silent_p.F437F	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	437										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TCCAGAACTTCGTGAAAATGG	0.488													5	87					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20172021	20172021	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:20172021T>C	uc002wru.2	+	15	1624	c.1548T>C	c.(1546-1548)GTT>GTC	p.V516V	C20orf26_uc010zse.1_Silent_p.V496V	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	516										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TAGCTGAAGTTGCAGAACAAA	0.338													12	104					0	0	1	0	0
CST8	10047	broad.mit.edu	37	20	23472403	23472403	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:23472403G>A	uc002wth.1	+	2	456	c.99G>A	c.(97-99)AGG>AGA	p.R33R		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	33						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					GGGTGCTGAGGAAATTAAAAC	0.527													12	135					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524035	24524035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:24524035C>T	uc002wtw.1	+	2	935	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	101	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						GTGCTGCGCTCCTGGGGGGAC	0.637													9	129					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24565605	24565605	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:24565605C>T	uc002wtw.1	+	3	1227	c.594C>T	c.(592-594)ATC>ATT	p.I198I		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	198	Helical; (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CTCTGGGCATCGCAGCCTTCT	0.617													11	128					0	0	1	0	0
ABHD12	26090	broad.mit.edu	37	20	25287536	25287536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:25287536G>A	uc002wus.1	-	10	1021	c.883C>T	c.(883-885)CCT>TCT	p.P295S	ABHD12_uc002wuq.2_Missense_Mutation_p.P295S|ABHD12_uc002wur.2_Missense_Mutation_p.P294S|ABHD12_uc002wut.1_Missense_Mutation_p.P294S|ABHD12_uc002wuu.1_Missense_Mutation_p.P75S	NM_001042472	NP_001035937	Q8N2K0	ABD12_HUMAN	abhydrolase domain containing 12 isoform a	295	Extracellular (Potential).					integral to membrane	acylglycerol lipase activity			skin(1)	1						TCAAACCCAGGGAAGTATCGA	0.388													5	54					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25443048	25443048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:25443048C>T	uc002wux.1	-	20	3627	c.3553G>A	c.(3553-3555)GAG>AAG	p.E1185K	NINL_uc010gdn.1_Missense_Mutation_p.E836K	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1185	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						ACCACCTCCTCCAGGCTCTGT	0.607													9	75					0	0	1	0	0
DEFB116	245930	broad.mit.edu	37	20	29891226	29891226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:29891226C>T	uc010ztm.1	-	2	98	c.98G>A	c.(97-99)AGC>AAC	p.S33N		NM_001037731	NP_001032820	Q30KQ4	DB116_HUMAN	beta-defensin 116 precursor	33					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			AGGCTCTCGGCTCTTGCCATT	0.453													6	68					0	0	1	0	0
DUSP15	128853	broad.mit.edu	37	20	30451750	30451750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:30451750G>A	uc002wwu.1	-	5	291	c.214C>T	c.(214-216)CAC>TAC	p.H72Y	DUSP15_uc002wwv.1_5'UTR|DUSP15_uc002www.1_5'UTR|DUSP15_uc002wwx.1_Missense_Mutation_p.H75Y			Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	72	Tyrosine-protein phosphatase.					cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CGGCAGCAGTGGATGAAGTTG	0.552													11	153					0	0	1	0	0
POFUT1	23509	broad.mit.edu	37	20	30804488	30804488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:30804488C>T	uc002wxp.2	+	4	555	c.506C>T	c.(505-507)TCC>TTC	p.S169F	POFUT1_uc002wxo.2_Missense_Mutation_p.S169F|POFUT1_uc010ztt.1_Missense_Mutation_p.S61F|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	169					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ACAGGCATTTCCTTCAGTGCT	0.507													5	101					0	0	1	0	0
ASXL1	171023	broad.mit.edu	37	20	31023914	31023914	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31023914C>T	uc002wxs.2	+	12	3825	c.3399C>T	c.(3397-3399)TCC>TCT	p.S1133S	ASXL1_uc010geb.2_Silent_p.S1024S	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1133					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						TGTCAGAATCCCCACAAGTAC	0.522			F|N|Mis		MDS|CMML								5	71					0	0	1	0	0
BPIL3	128859	broad.mit.edu	37	20	31627275	31627275	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31627275C>T	uc010zuc.1	+	10	1023	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	BPIL3_uc010zud.1_Silent_p.F280F	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	341						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TGGAGATGTTCGCAGCTCGGT	0.522													13	154					0	0	1	0	0
C20orf185	359710	broad.mit.edu	37	20	31656616	31656616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31656616G>A	uc002wym.1	+	10	986	c.986G>A	c.(985-987)GGG>GAG	p.G329E		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	329					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						CAGGCCCTGGGGAAGCTGCCC	0.463													3	53					0	0	1	0	0
C20orf70	140683	broad.mit.edu	37	20	31757083	31757083	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31757083T>C	uc002wyo.1	+	2	203	c.132T>C	c.(130-132)CTT>CTC	p.L44L		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	44						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						ACGAGGGACTTGAGACAGTTG	0.468													11	125					0	0	1	0	0
PLUNC	51297	broad.mit.edu	37	20	31827637	31827637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31827637G>A	uc002wyv.2	+	4	419	c.349G>A	c.(349-351)GAA>AAA	p.E117K	PLUNC_uc002wyt.3_Missense_Mutation_p.E117K|PLUNC_uc002wyu.3_Missense_Mutation_p.E117K	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	117					innate immune response	extracellular region	lipid binding				0						CCAGCTGCTGGAACTTGGCCT	0.532													20	236					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31873889	31873889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31873889C>T	uc002wyw.1	+	2	171	c.10C>T	c.(10-12)CCG>TCG	p.P4S	C20orf114_uc010gej.1_Missense_Mutation_p.P4S	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	4						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						GATGGCCGGCCCGTGGACCTT	0.617													13	164					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31879718	31879718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:31879718C>T	uc002wyw.1	+	6	682	c.521C>T	c.(520-522)TCC>TTC	p.S174F	C20orf114_uc010gej.1_Missense_Mutation_p.S174F	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	174						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						GAAAGGCTCTCCTTCCTGGTG	0.353											OREG0025868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	80					0	0	1	0	0
PXMP4	11264	broad.mit.edu	37	20	32298412	32298412	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:32298412G>A	uc002wzv.2	-	3	447	c.324C>T	c.(322-324)GCC>GCT	p.A108A	PXMP4_uc002wzw.2_Intron|PXMP4_uc010zuh.1_Missense_Mutation_p.P115L	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	108	Helical; (Potential).					integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						CCCCGAGGAAGGCCGCCAGGA	0.562													16	142					0	0	1	0	0
ITCH	83737	broad.mit.edu	37	20	33026322	33026322	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:33026322G>C	uc010geu.1	+	9	880	c.688G>C	c.(688-690)GGT>CGT	p.G230R	ITCH_uc002xak.2_Missense_Mutation_p.G189R|ITCH_uc010zuj.1_Missense_Mutation_p.G79R	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	230					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						TGCAGGAGCTGGTGAAAATAG	0.468													3	60					0	0	1	0	0
ITCH	83737	broad.mit.edu	37	20	33068912	33068912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:33068912C>T	uc010geu.1	+	21	2309	c.2117C>T	c.(2116-2118)TCC>TTC	p.S706F	ITCH_uc002xak.2_Missense_Mutation_p.S665F|ITCH_uc010zuj.1_Missense_Mutation_p.S555F	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	706	HECT.				apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						ATGTACTTCTCCGTTGACAAA	0.318													12	94					0	0	1	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33422175	33422175	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:33422175G>A	uc002xax.2	-	1		c.91C>T				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						GGGACCTCTGGATTTTTCTTA	0.408													7	62					0	0	1	0	0
CPNE1	8904	broad.mit.edu	37	20	34214176	34214176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:34214176G>A	uc002xdf.2	-	18	1964	c.1601C>T	c.(1600-1602)GCC>GTC	p.A534V	CPNE1_uc002xdc.2_Missense_Mutation_p.A196V|CPNE1_uc010zvj.1_Missense_Mutation_p.A539V|CPNE1_uc002xde.2_Missense_Mutation_p.A510V|CPNE1_uc002xdg.2_Missense_Mutation_p.A478V|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.A534V|CPNE1_uc002xdi.2_Missense_Mutation_p.A534V|CPNE1_uc002xdj.2_Missense_Mutation_p.A534V|CPNE1_uc002xdk.2_Missense_Mutation_p.A534V|CPNE1_uc002xdl.2_Missense_Mutation_p.A534V|CPNE1_uc002xdm.2_Missense_Mutation_p.A534V	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	534					lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGCCTGGGGGGCCTGTGCAGG	0.617													18	144					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34809826	34809826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:34809826G>A	uc002xfb.2	+	20	2651	c.2480G>A	c.(2479-2481)CGA>CAA	p.R827Q	EPB41L1_uc002xeu.2_Missense_Mutation_p.R725Q|EPB41L1_uc002xev.2_Missense_Mutation_p.R826Q|EPB41L1_uc002xew.2_Missense_Mutation_p.R718Q|EPB41L1_uc002xex.2_Missense_Mutation_p.R647Q|EPB41L1_uc002xey.2_Missense_Mutation_p.R577Q|EPB41L1_uc002xez.2_Missense_Mutation_p.R725Q|EPB41L1_uc010gfq.2_Missense_Mutation_p.R925Q	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	827	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					ATCGAGAAGCGAATCATCATT	0.537													11	151					0	0	1	0	0
SAMHD1	25939	broad.mit.edu	37	20	35547846	35547846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:35547846C>T	uc002xgh.1	-	7	903	c.773G>A	c.(772-774)GGT>GAT	p.G258D		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	258	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				AGGGATGAGACCATATTGTTC	0.353													5	62					0	0	1	0	0
RPN2	6185	broad.mit.edu	37	20	35812603	35812603	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:35812603T>C	uc002xgp.2	+	2	338	c.34T>C	c.(34-36)TTG>CTG	p.L12L	RPN2_uc002xgo.3_Silent_p.L12L|RPN2_uc010gfw.2_5'UTR|RPN2_uc002xgq.2_Silent_p.L12L	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	12					post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TGTCTTCCTGTTGGCCCTGAC	0.517													17	125					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36641227	36641227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:36641227G>A	uc002xhl.2	-	3	1201	c.992C>T	c.(991-993)CCC>CTC	p.P331L	KIAA0406_uc002xhm.2_Missense_Mutation_p.P331L	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	331							binding				0		Myeloproliferative disorder(115;0.00874)				CTTCAGAAGGGGACCAGCACA	0.453													7	105					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36760865	36760865	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:36760865G>A	uc002xhr.2	-	11	1753	c.1653C>T	c.(1651-1653)TAC>TAT	p.Y551Y	TGM2_uc002xhq.2_Silent_p.Y152Y|TGM2_uc010zvx.1_Silent_p.Y470Y|TGM2_uc010zvy.1_Silent_p.Y491Y|TGM2_uc002xhs.1_Silent_p.Y527Y	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	551					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	GGCAGTCACGGTATTTCTCAT	0.547													37	318					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869720	36869720	+	Silent	SNP	G	A	A	rs147347811	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:36869720G>A	uc002xhy.1	-	3	1085	c.813C>T	c.(811-813)TTC>TTT	p.F271F	KIAA1755_uc002xhz.1_Silent_p.F271F	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	271										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				AGTCTCCCTCGAAGTCCTGGC	0.582													9	130					0	0	1	0	0
RALGAPB	57148	broad.mit.edu	37	20	37153556	37153556	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:37153556T>C	uc002xiw.2	+	11	2012	c.1755T>C	c.(1753-1755)TTT>TTC	p.F585F	RALGAPB_uc010zvz.1_3'UTR|RALGAPB_uc002xix.2_Silent_p.F585F|RALGAPB_uc002xiy.1_Silent_p.F585F|RALGAPB_uc002xiz.2_Silent_p.F363F|RALGAPB_uc002xja.1_Silent_p.F312F	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	585					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TTCCTTACTTTATTTCAGCTC	0.433													15	146					0	0	1	0	0
DHX35	60625	broad.mit.edu	37	20	37634983	37634983	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:37634983T>C	uc002xjh.2	+	12	1217	c.1206T>C	c.(1204-1206)TGT>TGC	p.C402C	DHX35_uc010zwa.1_Silent_p.C247C|DHX35_uc010zwb.1_Silent_p.C247C|DHX35_uc010zwc.1_Silent_p.C371C	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	402	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CGGGAAAATGTTATCGCCTTT	0.488													13	94					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991054	39991054	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:39991054A>G	uc002xjy.1	-	4	1379	c.1155T>C	c.(1153-1155)TGT>TGC	p.C385C		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	385						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTAGTTGCCCACAGCAGCTGC	0.682													5	31					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991221	39991221	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:39991221A>C	uc002xjy.1	-	4	1212	c.988T>G	c.(988-990)TGT>GGT	p.C330G		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	330						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CGCAGGTCACACTCACTCTGG	0.677													4	20					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39992363	39992363	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:39992363C>T	uc002xjy.1	-	3	653	c.429G>A	c.(427-429)CTG>CTA	p.L143L		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	143						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GCTCAGGCTCCAGCTGGGGTG	0.652													9	116					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40081463	40081463	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:40081463C>T	uc002xka.1	-	21	3418	c.3240G>A	c.(3238-3240)ACG>ACA	p.T1080T		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1080					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GCCTGGATCTCGTGGGCCTTT	0.547													6	56					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40743953	40743953	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:40743953C>T	uc002xkg.2	-	22	3169	c.2985G>A	c.(2983-2985)GTG>GTA	p.V995V	PTPRT_uc010ggj.2_Silent_p.V1014V|PTPRT_uc010ggi.2_Silent_p.V198V	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	995	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCACACATTTCACCTGTGGCC	0.443													5	75					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41076964	41076964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:41076964C>T	uc002xkg.2	-	9	1640	c.1456G>A	c.(1456-1458)GGA>AGA	p.G486R	PTPRT_uc010ggj.2_Missense_Mutation_p.G486R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	486	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGAACAGCTCCTGGAACTACA	0.428													7	49					0	0	1	0	0
SGK2	10110	broad.mit.edu	37	20	42199308	42199308	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:42199308T>C	uc002xkv.2	+	6	811	c.592T>C	c.(592-594)TTC>CTC	p.F198L	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.F138L|SGK2_uc010ggm.2_Missense_Mutation_p.F138L|SGK2_uc002xks.2_Missense_Mutation_p.F137L|SGK2_uc002xku.2_Missense_Mutation_p.F138L	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	198	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CCGGGCCAGGTTCTACGCTGC	0.627													8	113					0	0	1	0	0
RIMS4	140730	broad.mit.edu	37	20	43385538	43385538	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:43385538C>T	uc002xms.2	-	5	591	c.591_splice	c.e5+1	p.Q197_splice	RIMS4_uc010ggu.2_Splice_Site_p.Q198_splice	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4						exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				ATGCCCCTCACCTGGAGGACT	0.587													31	320					0	0	1	0	0
SPINLW1	57119	broad.mit.edu	37	20	44171379	44171379	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:44171379G>A	uc002xou.2	-	3	383	c.351C>T	c.(349-351)TTC>TTT	p.F117F	SPINLW1_uc010zxc.1_Silent_p.F117F|SPINLW1_uc002xot.2_Silent_p.F101F|SPINLW1_uc002xov.1_3'UTR	NM_020398	NP_065131	O95925	EPPI_HUMAN	serine peptidase inhibitor-like, with Kunitz and	117	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				CTTTGGATTGGAAGTTGTTAT	0.498													7	98					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664558	44664558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:44664558C>T	uc010zxl.1	+	4	567	c.491C>T	c.(490-492)TCC>TTC	p.S164F	SLC12A5_uc002xra.2_Missense_Mutation_p.S141F|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.S141F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	164	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	ATCTGCTGCTCCTGTGTGAGT	0.612													4	98					0	0	1	0	0
NCOA5	57727	broad.mit.edu	37	20	44699028	44699028	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:44699028G>A	uc002xrd.2	-	2	714	c.186C>T	c.(184-186)GAC>GAT	p.D62D	NCOA5_uc002xrc.2_5'UTR|NCOA5_uc002xre.2_Silent_p.D62D	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	62	Arg/Asp-rich (mixed charge).|Transcription repression.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				TATGTCTGTGGTCCCGCAAGT	0.567													18	152					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45195025	45195025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:45195025G>A	uc002xsf.1	-	11	1375	c.1337C>T	c.(1336-1338)TCG>TTG	p.S446L	SLC13A3_uc010ghn.1_Missense_Mutation_p.S415L|SLC13A3_uc010zxw.1_Missense_Mutation_p.S396L|SLC13A3_uc002xsg.1_Missense_Mutation_p.S399L|SLC13A3_uc010gho.1_Missense_Mutation_p.S364L|SLC13A3_uc010zxx.1_Missense_Mutation_p.S348L|SLC13A3_uc002xse.1_5'Flank|SLC13A3_uc010ghm.1_Missense_Mutation_p.S33L|SLC13A3_uc010zxv.1_Missense_Mutation_p.S31L	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	446	Cytoplasmic (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	AGACAGCCCCGATTCCTGCGG	0.587													13	140					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354264	45354264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:45354264G>A	uc002xsl.2	+	2	686	c.589G>A	c.(589-591)GAC>AAC	p.D197N		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	197	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AACACACAAGGACCTCATCCC	0.617													12	89					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991320	47991320	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:47991320C>T	uc002xur.1	-	2	941	c.777G>A	c.(775-777)AAG>AAA	p.K259K	KCNB1_uc002xus.1_Silent_p.K259K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	259	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGAGTGGGCCCTTGAAGAACT	0.542													6	77					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991372	47991372	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:47991372A>G	uc002xur.1	-	2	889	c.725T>C	c.(724-726)ATG>ACG	p.M242T	KCNB1_uc002xus.1_Missense_Mutation_p.M242T	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	242	Helical; Name=Segment S2; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CAGGTACTCCATGGTGAACCA	0.567													6	67					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49236546	49236546	+	Silent	SNP	G	A	A	rs112022991	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:49236546G>A	uc002xvm.2	-	3	552	c.234C>T	c.(232-234)TTC>TTT	p.F78F	FAM65C_uc010zyt.1_Silent_p.F82F|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.F78F	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	78										ovary(2)	2						TCAATGCTTCGAAGATCTTCT	0.552													12	89					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50255931	50255931	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:50255931T>G	uc002xwg.1	-	15	1619	c.1619A>C	c.(1618-1620)CAG>CCG	p.Q540P	ATP9A_uc010gih.1_Missense_Mutation_p.Q404P|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	540	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						AGGGAAGATCTGTAGGATGGT	0.522											OREG0026043	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	135					0	0	1	0	0
ZFP64	55734	broad.mit.edu	37	20	50768817	50768817	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:50768817G>A	uc002xwl.2	-	6	2263	c.1914C>T	c.(1912-1914)ATC>ATT	p.I638I	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Silent_p.I636I|ZFP64_uc002xwn.2_Silent_p.I584I	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	638					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGGCCACTGCGATGTTCTGGC	0.557													9	70					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871891	51871891	+	Missense_Mutation	SNP	G	A	A	rs141129077		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:51871891G>A	uc002xwo.2	+	2	2850	c.1894G>A	c.(1894-1896)GAT>AAT	p.D632N		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	632					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CAGTGAGGGCGATTCTTTCCG	0.512													11	81					0	0	1	0	0
ZNF217	7764	broad.mit.edu	37	20	52193349	52193349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:52193349C>T	uc002xwq.3	-	3	2225	c.1954G>A	c.(1954-1956)GAT>AAT	p.D652N	ZNF217_uc010gij.1_Missense_Mutation_p.D644N	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	652					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GTACTGCCATCCGGAGGAGGA	0.488													19	182					0	0	1	0	0
CBLN4	140689	broad.mit.edu	37	20	54578952	54578952	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:54578952G>A	uc002xxa.2	-	1	1061	c.276C>T	c.(274-276)ATC>ATT	p.I92I		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	92	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			CGAAGTAAATGATGCGCGTCT	0.652													39	367					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55027037	55027037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:55027037C>T	uc002xxp.2	+	6	1030	c.805C>T	c.(805-807)CCC>TCC	p.P269S	CASS4_uc002xxq.3_Missense_Mutation_p.P269S|CASS4_uc002xxr.2_Missense_Mutation_p.P269S|CASS4_uc010zze.1_Missense_Mutation_p.P215S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	269					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGAATCAAGGCCCCACGCTCT	0.512													4	78					0	0	1	0	0
TFAP2C	7022	broad.mit.edu	37	20	55211713	55211713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:55211713G>A	uc002xya.2	+	6	1213	c.970G>A	c.(970-972)GAA>AAA	p.E324K	TFAP2C_uc010zzi.1_Missense_Mutation_p.E155K	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	324	H-S-H (helix-span-helix), dimerization.				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			CTGTGAAGCCGAATTTCCTAG	0.463													13	93					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56098188	56098188	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:56098188T>C	uc010gix.1	-	2	1352	c.690A>G	c.(688-690)CAA>CAG	p.Q230Q	CTCFL_uc010giw.1_Silent_p.Q230Q|CTCFL_uc002xym.2_Silent_p.Q230Q|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Silent_p.Q230Q|CTCFL_uc010gjb.1_Silent_p.Q230Q|CTCFL_uc010gjc.1_Silent_p.Q230Q|CTCFL_uc010gjd.1_Silent_p.Q230Q|CTCFL_uc010gje.2_Silent_p.Q230Q|CTCFL_uc010gjf.2_Silent_p.Q25Q|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Silent_p.Q230Q|CTCFL_uc010gji.1_Silent_p.Q25Q|CTCFL_uc010gjj.1_Silent_p.Q230Q|CTCFL_uc010gjk.1_Silent_p.Q230Q|CTCFL_uc010gjl.1_Silent_p.Q230Q	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	230					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CAGCTGTAGGTTGATCCTCTT	0.393													11	169					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57415170	57415170	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57415170G>A	uc002xzt.2	+	1	376	c.9G>A	c.(7-9)CGG>CGA	p.R3R	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GGATGGATCGGAGGTCCCGGG	0.657			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			8	76					0	0	1	0	0
TH1L	51497	broad.mit.edu	37	20	57566462	57566462	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57566462C>T	uc002yag.2	+	9	1104	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_Silent_p.I359I	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	359					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			ACATCCACATCTTGGCGTACG	0.498													14	106					0	0	1	0	0
TUBB1	81027	broad.mit.edu	37	20	57597906	57597906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57597906G>A	uc002yak.2	+	2	333	c.64G>A	c.(64-66)GAG>AAG	p.E22K		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	22					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	TCAGTTCTGGGAGATGATTGG	0.547													6	49					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768888	57768889	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57768888_57768889CC>TT	uc002yan.2	+	1	2814_2815	c.2814_2815CC>TT	c.(2812-2817)TCCCCC>TCTTCC	p.P939S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	939						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATGCCTTTTCCCCCAAGTACCT	0.634													10	161					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768962	57768962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57768962G>A	uc002yan.2	+	1	2888	c.2888G>A	c.(2887-2889)AGC>AAC	p.S963N		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	963						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCAAGGCACAGCCAGGACTCT	0.607													18	207					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57769093	57769093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57769093G>A	uc002yan.2	+	1	3019	c.3019G>A	c.(3019-3021)GAC>AAC	p.D1007N		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1007						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CATCCTGGAGGACCCCAGCTG	0.637													5	61					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57828183	57828183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57828183G>A	uc002yan.2	+	4	4178	c.4178G>A	c.(4177-4179)CGA>CAA	p.R1393Q		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1393						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATGGACAAACGAACTGTGAAG	0.468													5	112					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57829070	57829070	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:57829070C>G	uc002yan.2	+	5	4306	c.4306C>G	c.(4306-4308)CCC>GCC	p.P1436A		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1436						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CGTGCCTCTACCCCCTGGCAA	0.527													4	57					0	0	1	0	0
MIR646	693231	broad.mit.edu	37	20	58883619	58883619	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:58883619C>T	hsa-mir-646|MI0003661	+			c.88C>T			uc002ybl.2_Intron|uc010gjw.1_Intron																	0						gcctcaggctcagtggcctat	0													4	41					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60485640	60485640	+	Missense_Mutation	SNP	G	A	A	rs139577432	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:60485640G>A	uc002ybn.1	+	9	1365	c.1351G>A	c.(1351-1353)GAG>AAG	p.E451K	CDH4_uc002ybp.1_Missense_Mutation_p.E377K	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	451	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CGTAACCAACGAGGGCATGGT	0.592													10	84					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61527623	61527623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:61527623G>A	uc002ydr.1	-	8	2440	c.2176C>T	c.(2176-2178)CGC>TGC	p.R726C	DIDO1_uc002yds.1_Missense_Mutation_p.R726C|DIDO1_uc002ydt.1_Missense_Mutation_p.R726C|DIDO1_uc002ydu.1_Missense_Mutation_p.R726C	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	726	TFIIS central.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					ATGATGCTGCGATATTTACTC	0.418													19	129					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981983	61981983	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:61981983G>A	uc002yes.2	-	5	958	c.780C>T	c.(778-780)CTC>CTT	p.L260L	CHRNA4_uc002yet.1_Silent_p.L84L|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.L189L|CHRNA4_uc002yev.1_Silent_p.L84L|CHRNA4_uc010gkf.1_Silent_p.L84L	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	260	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CCAGCACGGTGAGGCAGGAGA	0.602													7	95					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61982226	61982226	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:61982226G>A	uc002yes.2	-	5	715	c.537C>T	c.(535-537)TTC>TTT	p.F179F	CHRNA4_uc002yet.1_Silent_p.F3F|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.F108F|CHRNA4_uc002yev.1_Silent_p.F3F|CHRNA4_uc010gkf.1_Silent_p.F3F	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	179	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TCCAGGAGCCGAATTTCATGG	0.602													14	134					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62076714	62076714	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:62076714T>A	uc002yey.1	-	3	568	c.391A>T	c.(391-393)ATC>TTC	p.I131F	KCNQ2_uc002yez.1_Missense_Mutation_p.I131F|KCNQ2_uc002yfa.1_Missense_Mutation_p.I131F|KCNQ2_uc002yfb.1_Missense_Mutation_p.I131F|KCNQ2_uc011aax.1_Missense_Mutation_p.I131F|KCNQ2_uc002yfc.1_Missense_Mutation_p.I131F	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	131	Helical; Name=Segment S2; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	ATAGTCACGATTTCCTGCAGG	0.657													7	77					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62192271	62192271	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:62192271G>A	uc002yfm.2	-	16	8050	c.7158C>T	c.(7156-7158)CTC>CTT	p.L2386L	PRIC285_uc002yfl.1_Silent_p.L1817L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2386					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			TGTGGTCTCCGAGAAGAACCA	0.627													14	117					0	0	1	0	0
RTEL1	51750	broad.mit.edu	37	20	62324551	62324551	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:62324551C>T	uc002yfu.1	+	30	3250	c.2907C>T	c.(2905-2907)ATC>ATT	p.I969I	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Silent_p.I969I|RTEL1_uc011abd.1_Silent_p.I993I|RTEL1_uc011abe.1_Silent_p.I746I|RTEL1_uc002yfw.2_RNA|RTEL1_uc002yfx.1_Silent_p.I214I|TNFRSF6B_uc002yfy.2_5'Flank	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	969					DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			AGGTCTGTATCCAGCTGACAG	0.602													22	185					0	0	1	0	0
Unknown	0	broad.mit.edu	37	21	9769119	9769119	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:9769119G>A	uc011abu.1	+	10		c.1094G>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		GCTCAATTCCGATCTGTTGAA	0.373													3	11					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998261	10998261	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:10998261C>T	uc002yis.1	-	11		c.1992G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTTCCACTCCCTTAGTTTCA	0.388													8	149					0	0	1	0	0
SAMSN1	64092	broad.mit.edu	37	21	15872876	15872876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:15872876C>T	uc002yju.1	-	6	824	c.742G>A	c.(742-744)GAG>AAG	p.E248K	SAMSN1_uc010gky.1_Missense_Mutation_p.E80K|SAMSN1_uc002yjv.1_Missense_Mutation_p.E316K	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	248	SAM.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TCTAGGAACTCCTGCAGAGTC	0.428													6	56					0	0	1	0	0
NRIP1	8204	broad.mit.edu	37	21	16339195	16339195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:16339195G>A	uc002yjx.2	-	4	1917	c.1319C>T	c.(1318-1320)CCC>CTC	p.P440L		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	440	Repression domain 2.|CTBP-binding; principal site.|Required for targeting to small nuclear foci.			PIDL->AAAA: Abolishes interaction with CTBP1.|PID->AIA: Abolishes interaction with CTBP1 and attenuates nuclear hormone receptor-dependent transcription repression.	androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		CAAGTCTATGGGAACACAGTT	0.388													4	119					0	0	1	0	0
CHODL	140578	broad.mit.edu	37	21	19628935	19628935	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:19628935T>G	uc002ykv.2	+	2	580	c.189T>G	c.(187-189)AGT>AGG	p.S63R	CHODL_uc002ykr.2_Missense_Mutation_p.S22R|CHODL_uc002yks.2_Missense_Mutation_p.S22R|CHODL_uc002ykt.2_Missense_Mutation_p.S22R|CHODL_uc002yku.2_Missense_Mutation_p.S22R	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	63	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		CTTGTGAGAGTGAGGGAGGAG	0.498													6	56					0	0	1	0	0
APP	351	broad.mit.edu	37	21	27423397	27423397	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:27423397T>C	uc002ylz.2	-	5	781	c.581A>G	c.(580-582)GAC>GGC	p.D194G	APP_uc010glk.2_Missense_Mutation_p.D189G|APP_uc002yma.2_Missense_Mutation_p.D194G|APP_uc011ach.1_Missense_Mutation_p.D138G|APP_uc002ymb.2_Missense_Mutation_p.D194G|APP_uc010glj.2_Missense_Mutation_p.D138G|APP_uc011aci.1_Missense_Mutation_p.D159G|APP_uc011acj.1_Missense_Mutation_p.D194G	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	194	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				ATCCACATTGTCACTTTCTTC	0.527													8	100					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34038272	34038272	+	Missense_Mutation	SNP	C	T	T	rs142478967		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:34038272C>T	uc002yqh.2	-	17	2243	c.2243G>A	c.(2242-2244)CGA>CAA	p.R748Q	SYNJ1_uc011ads.1_Missense_Mutation_p.R704Q|SYNJ1_uc002yqf.2_Missense_Mutation_p.R709Q|SYNJ1_uc002yqg.2_Missense_Mutation_p.R704Q|SYNJ1_uc002yqi.2_Missense_Mutation_p.R748Q	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	709	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						ACTCAATTTTCGTGCTATTTC	0.363													3	41					0	0	1	0	0
GART	2618	broad.mit.edu	37	21	34889714	34889714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:34889714G>A	uc002yrx.2	-	15	2039	c.1904C>T	c.(1903-1905)TCC>TTC	p.S635F	GART_uc002yrz.2_Missense_Mutation_p.S635F|GART_uc010gmd.2_Missense_Mutation_p.S297F|GART_uc002yry.2_Missense_Mutation_p.S635F	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	635	AIRS.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	GTACTGGAGGGAAGATTTTGC	0.458													13	142					0	0	1	0	0
KCNE2	9992	broad.mit.edu	37	21	35742925	35742925	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:35742925A>C	uc002ytt.1	+	2	288	c.148A>C	c.(148-150)ATC>CTC	p.I50L		NM_172201	NP_751951	Q9Y6J6	KCNE2_HUMAN	potassium voltage-gated channel, Isk-related	50	Helical; (Potential).				blood circulation|muscle contraction|regulation of heart contraction	lysosome|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						CTACTATGTCATCCTGTACCT	0.458													9	78					0	0	1	0	0
KCNE1	3753	broad.mit.edu	37	21	35821850	35821850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:35821850G>A	uc010gmp.2	-	2	513	c.83C>T	c.(82-84)TCG>TTG	p.S28L	KCNE1_uc002ytz.2_Missense_Mutation_p.S28L|KCNE1_uc010gmq.2_Missense_Mutation_p.S28L|KCNE1_uc010gmr.2_Missense_Mutation_p.S28L|KCNE1_uc010gms.2_Missense_Mutation_p.S28L|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	28					blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	GGCCAGGCCCGACATGTTGCC	0.607													6	74					0	0	1	0	0
SIM2	6493	broad.mit.edu	37	21	38103386	38103386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:38103386G>A	uc002yvr.2	+	7	840	c.784G>A	c.(784-786)GAG>AAG	p.E262K	SIM2_uc002yvq.2_Missense_Mutation_p.E262K	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	262	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						GGACCTGATCGAGAAGACCCT	0.612													13	124					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086776	39086776	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:39086776C>T	uc011aej.1	-	3	737	c.684G>A	c.(682-684)AGG>AGA	p.R228R	KCNJ6_uc002ywo.2_Silent_p.R228R	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	228	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TGTGGGAATTCCTAAGGTCCC	0.532													7	75					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39212969	39212969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:39212969C>T	uc011aej.1	-	2	69	c.16G>A	c.(16-18)GAA>AAA	p.E6K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E6K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	6	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	CTCATGGATTCTGTCAGCTTG	0.343													18	275					0	0	1	0	0
DSCR4	10281	broad.mit.edu	37	21	39493345	39493345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:39493345G>A	uc002ywp.2	-	1	110	c.5C>T	c.(4-6)TCG>TTG	p.S2L	DSCR8_uc002ywt.3_5'Flank|DSCR8_uc010gnp.2_5'Flank|DSCR8_uc010gnq.2_5'Flank|DSCR8_uc010gnr.2_5'Flank|DSCR8_uc010gns.2_5'Flank	NM_005867	NP_005858	P56555	DSCR4_HUMAN	Down syndrome critical region protein 4	2										ovary(1)	1						gatgattaacgacatggacac	0													5	41					0	0	1	0	0
LCA5L	150082	broad.mit.edu	37	21	40800157	40800157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:40800157G>A	uc002yxu.2	-	4	576	c.263C>T	c.(262-264)CCT>CTT	p.P88L	LCA5L_uc002yxv.2_Missense_Mutation_p.P88L|LCA5L_uc002yxw.1_Missense_Mutation_p.P88L|LCA5L_uc002yxx.1_Intron|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	88											0		Prostate(19;1.2e-06)				TTTTACCACAGGCTGCTTTAA	0.333													7	65					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41385037	41385037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:41385037G>A	uc002yyq.1	-	33	6415	c.5963C>T	c.(5962-5964)TCC>TTC	p.S1988F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1988	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGATTCTTGGGAGCTGCTCAT	0.562													10	52					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42064779	42064779	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:42064779G>A	uc002yyq.1	-	3	917	c.465C>T	c.(463-465)ATC>ATT	p.I155I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	155	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGACGACAGTGATGTACGCCT	0.522													7	72					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080489	42080489	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:42080489G>A	uc002yyq.1	-	2	704	c.252C>T	c.(250-252)TTC>TTT	p.F84F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	84	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GAGGGAAGGGGAAAATTTGGA	0.498													8	87					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43327137	43327137	+	Missense_Mutation	SNP	G	A	A	rs146922306		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43327137G>A	uc002yzw.2	-	10	1524	c.1282C>T	c.(1282-1284)CGC>TGC	p.R428C	C2CD2_uc002yzt.2_Missense_Mutation_p.R44C|C2CD2_uc002yzu.2_Missense_Mutation_p.R260C|C2CD2_uc002yzv.2_Missense_Mutation_p.R273C|C2CD2_uc002yzx.1_Missense_Mutation_p.R273C	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	428						cytosol|extracellular region|nucleus				ovary(1)	1						ACGTCGACGCGAGGCTTGGTC	0.592													17	87					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43342097	43342097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43342097G>A	uc002yzw.2	-	3	718	c.476C>T	c.(475-477)TCC>TTC	p.S159F	C2CD2_uc002yzu.2_5'Flank|C2CD2_uc002yzv.2_Missense_Mutation_p.S4F|C2CD2_uc002yzx.1_Missense_Mutation_p.S4F	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	159						cytosol|extracellular region|nucleus				ovary(1)	1						ATGGAAAGGGGAGAGCCGCAT	0.537													9	55					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547240	43547240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43547240G>A	uc002zaf.1	+	19	3418	c.3418G>A	c.(3418-3420)GAA>AAA	p.E1140K	UMODL1_uc002zad.1_Missense_Mutation_p.E1068K|UMODL1_uc002zae.1_Missense_Mutation_p.E1196K|UMODL1_uc002zag.1_Missense_Mutation_p.E1268K|UMODL1_uc002zal.1_Missense_Mutation_p.E90K|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1140	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGTCAGGATCGAAGTGGGGCT	0.547													9	103					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547341	43547341	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43547341C>T	uc002zaf.1	+	19	3519	c.3519C>T	c.(3517-3519)TTC>TTT	p.F1173F	UMODL1_uc002zad.1_Silent_p.F1101F|UMODL1_uc002zae.1_Silent_p.F1229F|UMODL1_uc002zag.1_Silent_p.F1301F|UMODL1_uc002zal.1_Silent_p.F123F|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1173	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CCTTCAGCTTCATTAACAACA	0.557													8	57					0	0	1	0	0
RSPH1	89765	broad.mit.edu	37	21	43897554	43897554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43897554C>T	uc002zbg.2	-	7	679	c.574G>A	c.(574-576)GAA>AAA	p.E192K		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	192					meiosis	cytosol|nucleus				ovary(1)	1						TCTCCTCTTTCCTATTTTAAG	0.398													4	94					0	0	1	0	0
RSPH1	89765	broad.mit.edu	37	21	43912898	43912898	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:43912898A>T	uc002zbg.2	-	3	349	c.244T>A	c.(244-246)TTT>ATT	p.F82I		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	82	MORN 3.				meiosis	cytosol|nucleus				ovary(1)	1						GGATATATAAAAGTGCCTTGA	0.328													10	128					0	0	1	0	0
PKNOX1	5316	broad.mit.edu	37	21	44433325	44433325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:44433325C>T	uc002zcq.1	+	5	687	c.499C>T	c.(499-501)CCG>TCG	p.P167S	PKNOX1_uc002zcp.1_Missense_Mutation_p.P167S|PKNOX1_uc011aex.1_Missense_Mutation_p.P50S|PKNOX1_uc002zcr.2_Missense_Mutation_p.P167S	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	167							sequence-specific DNA binding			large_intestine(2)	2						GCCTGGAAGCCCGTACTCACC	0.473													5	103					0	0	1	0	0
CBS	875	broad.mit.edu	37	21	44483156	44483156	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:44483156G>A	uc002zcu.2	-	10	1106	c.861C>T	c.(859-861)CTC>CTT	p.L287L	CBS_uc002zcs.1_Silent_p.L182L|CBS_uc002zct.2_Silent_p.L287L|CBS_uc002zcw.3_Silent_p.L287L|CBS_uc002zcv.2_Silent_p.L287L|CBS_uc002zcx.2_5'Flank	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	287					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	CCGGCTCTGCGAGGATGGACC	0.612													17	139					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45821663	45821663	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:45821663C>T	uc002zet.1	+	17	2634	c.2421C>T	c.(2419-2421)TTC>TTT	p.F807F	TRPM2_uc002zeu.1_Silent_p.F807F|TRPM2_uc002zew.1_Silent_p.F807F|TRPM2_uc010gpt.1_Silent_p.F807F|TRPM2_uc002zex.1_Silent_p.F593F|TRPM2_uc002zey.1_Silent_p.F320F	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	807	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTCCTACTTCGCCTTCCTCT	0.632													44	466					0	0	1	0	0
LRRC3	81543	broad.mit.edu	37	21	45876902	45876902	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:45876902C>T	uc002zfa.2	+	2	668	c.375C>T	c.(373-375)ATC>ATT	p.I125I		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	125	LRR 3.					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		ACAACCGCATCCAGAGGATCC	0.672													4	63					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45929162	45929162	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:45929162G>A	uc002zfe.1	-	10	1740	c.1674C>T	c.(1672-1674)TCC>TCT	p.S558S	C21orf29_uc010gpv.1_Silent_p.S490S	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	558	EAR 5.				cell adhesion	extracellular region	structural molecule activity				0						TGATGACATAGGAATCATTCT	0.547													8	63					0	0	1	0	0
KRTAP12-4	386684	broad.mit.edu	37	21	46074273	46074273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:46074273G>A	uc002zfs.1	-	1	304	c.259C>T	c.(259-261)CCA>TCA	p.P87S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198698	NP_941971	P60329	KR124_HUMAN	keratin associated protein 12-4	87	13.|15 X 5 AA approximate repeats.					keratin filament				ovary(1)	1						CCAGAGGTTGGGCAGAAGGAA	0.642													4	69					0	0	1	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086496	46086496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:46086496G>A	uc002zfu.2	-	1	349	c.308C>T	c.(307-309)TCC>TTC	p.S103F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	103	23 X 5 AA approximate repeats.|17.					keratin filament					0						CACGCACAGGGAGGACTGGCA	0.642													4	89					0	0	1	0	0
ITGB2	3689	broad.mit.edu	37	21	46306799	46306799	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:46306799T>C	uc002zgd.2	-	14	2143	c.2099A>G	c.(2098-2100)AAC>AGC	p.N700S	ITGB2_uc002zge.2_Missense_Mutation_p.N700S|ITGB2_uc002zgf.3_Missense_Mutation_p.N700S|ITGB2_uc011afl.1_Missense_Mutation_p.N622S|ITGB2_uc010gpw.2_Missense_Mutation_p.N643S|ITGB2_uc002zgg.2_Missense_Mutation_p.N700S	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	700	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGCGGCGATGTTGGGGCCTGC	0.642													6	54					0	0	1	0	0
ITGB2	3689	broad.mit.edu	37	21	46308786	46308786	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:46308786G>A	uc002zgd.2	-	13	1946	c.1902C>T	c.(1900-1902)TTC>TTT	p.F634F	ITGB2_uc002zge.2_Silent_p.F634F|ITGB2_uc002zgf.3_Silent_p.F634F|ITGB2_uc011afl.1_Silent_p.F556F|ITGB2_uc010gpw.2_Silent_p.F577F|ITGB2_uc002zgg.2_Silent_p.F634F	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	634	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGCCCTTTTCGAACTTCAGGC	0.677													5	41					0	0	1	0	0
PCBP3	54039	broad.mit.edu	37	21	47349880	47349880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:47349880C>T	uc002zhq.1	+	10	892	c.767C>T	c.(766-768)CCC>CTC	p.P256L	PCBP3_uc010gqb.2_Missense_Mutation_p.P256L|PCBP3_uc002zhp.1_Missense_Mutation_p.P256L|PCBP3_uc002zhs.1_Missense_Mutation_p.P230L|PCBP3_uc002zhr.1_Missense_Mutation_p.P255L|PCBP3_uc002zht.1_Missense_Mutation_p.P246L	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	256					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		CCCTTTCCTCCCCTCGGACAG	0.542													22	246					0	0	1	0	0
MCM3APAS	114044	broad.mit.edu	37	21	47660784	47660784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:47660784C>T	uc002zin.2	+	3	261	c.205C>T	c.(205-207)CTC>TTC	p.L69F	MCM3APAS_uc002zim.2_RNA|MCM3AP_uc002zio.1_Silent_p.E353E|MCM3AP_uc002zip.1_Silent_p.E599E|MCM3AP_uc002ziq.1_Silent_p.E785E|MCM3AP_uc002zir.1_Silent_p.E1858E|MCM3APAS_uc002zis.1_RNA					Homo sapiens MCM3APAS mRNA, partial sequence.												0						CCAAGAGCTCCTCAGCAGAAG	0.517													4	130					0	0	1	0	0
MCM3AP	8888	broad.mit.edu	37	21	47692664	47692664	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr21:47692664G>T	uc002zir.1	-	8	2312	c.2276C>A	c.(2275-2277)GCC>GAC	p.A759D		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	759					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CATGAAGTGGGCACAGTGGAT	0.557													9	115					5.16669e-11	5.22876e-11	1	1	0
CCT8L2	150160	broad.mit.edu	37	22	17073120	17073120	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:17073120G>A	uc002zlp.1	-	1	581	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	107					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GCAGAACCACGAAGGCTGTGC	0.662													4	88					0	0	1	0	0
UFD1L	7353	broad.mit.edu	37	22	19459311	19459311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:19459311G>A	uc002zpm.2	-	4	320	c.190C>T	c.(190-192)CCC>TCC	p.P64S	UFD1L_uc002zpo.2_Missense_Mutation_p.P64S|UFD1L_uc011agy.1_Missense_Mutation_p.P64S|UFD1L_uc002zpp.2_Missense_Mutation_p.P17S|UFD1L_uc010grq.2_Missense_Mutation_p.P17S	NM_005659	NP_005650	Q92890	UFD1_HUMAN	ubiquitin fusion degradation 1-like isoform A	64					skeletal system development|ubiquitin-dependent protein catabolic process	cytosol|nucleus	protein binding|ubiquitin-specific protease activity				0	Colorectal(54;0.0993)					AACAGCATGGGATAGGTAATG	0.517													8	93					0	0	1	0	0
CDC45	8318	broad.mit.edu	37	22	19495026	19495026	+	Silent	SNP	C	T	T	rs138627266		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:19495026C>T	uc002zpr.2	+	11	1018	c.942C>T	c.(940-942)TTC>TTT	p.F314F	CDC45_uc011agz.1_Silent_p.F309F|CDC45_uc011aha.1_Silent_p.F346F|CDC45_uc002zps.2_Silent_p.F314F|CDC45_uc002zpt.2_Silent_p.F268F	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	314					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						TCCAGGAGTTCCTTGCAGACA	0.587													9	90					0	0	1	0	0
TBX1	6899	broad.mit.edu	37	22	19770515	19770515	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:19770515C>T	uc002zqc.2	+	9	1218	c.1089C>T	c.(1087-1089)TCC>TCT	p.S363S		NM_005992	NP_005983	O43435	TBX1_HUMAN	T-box 1 isoform B	Error:Variant_position_missing_in_O43435_after_alignment					embryonic viscerocranium morphogenesis|heart development|parathyroid gland development|pharyngeal system development|regulation of transcription from RNA polymerase II promoter|soft palate development|thymus development	nucleus	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)	2	Colorectal(54;0.0993)	all_lung(157;3.05e-06)				agtctgagtccctgagaccac	0													9	127					0	0	1	0	0
TXNRD2	10587	broad.mit.edu	37	22	19918599	19918599	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:19918599G>A	uc011ahc.1	-	2	159	c.126C>T	c.(124-126)CTC>CTT	p.L42L	TXNRD2_uc002zql.1_5'UTR|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Silent_p.L41L|TXNRD2_uc010grv.1_Silent_p.L42L|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqs.2_Silent_p.L10L	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	42	FAD (By similarity).				cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					CGACCACCAGGAGATCATAGT	0.537													17	157					0	0	1	0	0
MED15	51586	broad.mit.edu	37	22	20936973	20936973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:20936973C>T	uc002zsp.2	+	10	1428	c.1348C>T	c.(1348-1350)CCT>TCT	p.P450S	MED15_uc002zsq.2_Missense_Mutation_p.P410S|MED15_uc010gso.2_Missense_Mutation_p.P393S|MED15_uc002zsr.2_Missense_Mutation_p.P384S|MED15_uc011ahs.1_Missense_Mutation_p.P384S|MED15_uc002zss.2_Missense_Mutation_p.P329S|MED15_uc011ahu.1_Missense_Mutation_p.P160S|MED15_uc002zst.2_Missense_Mutation_p.P66S|MED15_uc002zsu.2_Missense_Mutation_p.P55S	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	450	Pro-rich.|Poly-Pro.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			GTCGATGCCCCCTCCCCCCCA	0.731													8	29					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21082078	21082078	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:21082078A>G	uc002zsz.3	-	40	4814	c.4583T>C	c.(4582-4584)GTG>GCG	p.V1528A	PI4KA_uc002zsy.3_Missense_Mutation_p.V338A	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1528					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TGCTTCAGGCACATCACTAAC	0.512													11	108					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21107419	21107419	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:21107419G>A	uc002zsz.3	-	24	2898	c.2667C>T	c.(2665-2667)TTC>TTT	p.F889F		NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	889					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TCATGTTCAGGAAGGCATCGA	0.502													5	48					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21174039	21174039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:21174039G>A	uc002zsz.3	-	6	736	c.505C>T	c.(505-507)CGA>TGA	p.R169*	PI4KA_uc010gsq.1_Nonsense_Mutation_p.R227*	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	169					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GAACGCCTTCGAACACCTTCA	0.517													18	188					0	0	1	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843023	22843023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:22843023G>A	uc002zwc.1	-	4	1477	c.701C>T	c.(700-702)CCT>CTT	p.P234L	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TGCTGGAAAAGGTGCTCCATT	0.368													12	101					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22893200	22893200	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:22893200C>T	uc002zwf.2	-	3	489	c.333G>A	c.(331-333)GAG>GAA	p.E111E	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.E95E|PRAME_uc010gtr.2_Silent_p.E111E|PRAME_uc002zwg.2_Silent_p.E111E|PRAME_uc002zwh.2_Silent_p.E111E|PRAME_uc002zwi.2_Silent_p.E111E|PRAME_uc002zwj.2_Silent_p.E111E|PRAME_uc002zwk.2_Silent_p.E111E	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	111					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TGGGGCGAACCTCCTGGGCAA	0.597													14	169					0	0	1	0	0
GNAZ	2781	broad.mit.edu	37	22	23438189	23438189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:23438189G>A	uc002zwu.1	+	2	844	c.307G>A	c.(307-309)GAC>AAC	p.D103N	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	103						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		CCGCGCCTACGACGCTGTGCA	0.662													20	173					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23657640	23657640	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:23657640C>T	uc002zww.2	+	23	4343	c.3747C>T	c.(3745-3747)TTC>TTT	p.F1249F	BCR_uc002zwx.2_Silent_p.F1205F|BCR_uc011aiy.1_Silent_p.F838F	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1249					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TGCTGTACTTCCTGCAGCTGG	0.622			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								10	91					0	0	1	0	0
ADORA2A	135	broad.mit.edu	37	22	24837187	24837187	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:24837187C>T	uc002zzx.2	+	5	1732	c.969C>T	c.(967-969)GTC>GTT	p.V323V	ADORA2A_uc002zzy.3_Silent_p.V323V|ADORA2A_uc011ajs.1_Silent_p.V184V|ADORA2A_uc010gup.2_Silent_p.V323V|ADORA2A_uc010guq.2_Silent_p.V323V|ADORA2A_uc003aab.2_Silent_p.V323V|ADORA2A_uc003aac.2_Silent_p.V184V|C22orf45_uc003aad.1_Intron	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	323	Cytoplasmic.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	GTGCCCGGGTCTTGGCAGCTC	0.642													8	34					0	0	1	0	0
C22orf36	388886	broad.mit.edu	37	22	24985893	24985893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:24985893G>A	uc003aaq.2	-	2	231	c.202C>T	c.(202-204)CTT>TTT	p.L68F	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_5'Flank|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	68											0						ATATCAGGAAGGAGGGTCCTC	0.607													3	23					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707874	26707874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:26707874G>A	uc003acb.2	+	8	1978	c.1822G>A	c.(1822-1824)GAA>AAA	p.E608K	SEZ6L_uc003acc.2_Missense_Mutation_p.E608K|SEZ6L_uc011akc.1_Missense_Mutation_p.E608K|SEZ6L_uc003acd.2_Missense_Mutation_p.E608K|SEZ6L_uc011akd.1_Missense_Mutation_p.E608K|SEZ6L_uc003ace.2_Missense_Mutation_p.E608K|SEZ6L_uc003acf.1_Missense_Mutation_p.E381K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E381K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	608	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGCCATCATCGAATGCATCAA	0.592													26	173					0	0	1	0	0
HPS4	89781	broad.mit.edu	37	22	26860447	26860447	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:26860447G>A	uc003acl.2	-	11	1808	c.1149C>T	c.(1147-1149)GCC>GCT	p.A383A	HPS4_uc003aci.2_Silent_p.A378A|HPS4_uc003acj.2_Silent_p.A247A|HPS4_uc003ack.2_Silent_p.A174A|HPS4_uc003acn.2_Silent_p.A229A|HPS4_uc010gvd.1_Silent_p.A401A|HPS4_uc003ach.2_Silent_p.A118A	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	383					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						AATGACCTGAGGCCATTTCCA	0.547									Hermansky-Pudlak_syndrome				7	52					0	0	1	0	0
ZNRF3	84133	broad.mit.edu	37	22	29440777	29440777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:29440777G>A	uc003aeg.2	+	5	508	c.343G>A	c.(343-345)GAA>AAA	p.E115K	ZNRF3_uc003aeh.1_Missense_Mutation_p.E115K	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	215	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GCAACCCACTGAATACTTTGA	0.512													21	86					0	0	1	0	0
AP1B1	162	broad.mit.edu	37	22	29752421	29752421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:29752421G>A	uc003afj.2	-	6	894	c.710C>T	c.(709-711)GCC>GTC	p.A237V	AP1B1_uc003afi.2_Missense_Mutation_p.A237V|AP1B1_uc003afk.2_Missense_Mutation_p.A237V|AP1B1_uc003afl.2_Missense_Mutation_p.A237V	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	237					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCACCTCTGGGCCTCGCGGTC	0.637													3	35					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885663	29885663	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:29885663G>A	uc003afo.2	+	4	2105	c.2034G>A	c.(2032-2034)GAG>GAA	p.E678E	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	684	17.|30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.				cell death|nervous system development	neurofilament					0						AGTCCCCTGAGAAGGCCAAGT	0.572													16	162					0	0	1	0	0
CABP7	164633	broad.mit.edu	37	22	30124660	30124660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30124660G>A	uc003agl.2	+	3	365	c.295G>A	c.(295-297)GGA>AGA	p.G99R		NM_182527	NP_872333	Q86V35	CABP7_HUMAN	calcium binding protein 7	99	Cytoplasmic (Potential).|EF-hand 2.					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding				0			OV - Ovarian serous cystadenocarcinoma(5;0.00442)|Epithelial(10;0.215)|all cancers(5;0.233)			GACCCTTCTGGGACCCAAACT	0.577													7	76					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30186469	30186469	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30186469G>A	uc003agr.2	-	19	2196	c.2091C>T	c.(2089-2091)CTC>CTT	p.L697L	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Silent_p.L697L|ASCC2_uc011akr.1_Silent_p.L621L	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	697					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CTTTCTTGGCGAGAAAGGCCA	0.597													6	60					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30186482	30186482	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30186482C>G	uc003agr.2	-	19	2183	c.2078G>C	c.(2077-2079)CGC>CCC	p.R693P	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.R693P|ASCC2_uc011akr.1_Missense_Mutation_p.R617P	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	693					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			AAAGGCCATGCGCCTGGCTTC	0.602													7	61					0	0	1	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30690065	30690065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30690065G>A	uc011akt.1	-	7	764	c.740C>T	c.(739-741)TCG>TTG	p.S247L	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.S105L|TBC1D10A_uc003ahj.3_Missense_Mutation_p.S159L|TBC1D10A_uc010gvu.2_Missense_Mutation_p.S254L|TBC1D10A_uc003ahk.3_Missense_Mutation_p.S247L	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	247	Rab-GAP TBC.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						CTGCAACAGCGAGAAAAGGAT	0.602													14	134					0	0	1	0	0
SEC14L3	266629	broad.mit.edu	37	22	30864656	30864656	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30864656G>A	uc003ahy.2	-	5	351	c.262C>T	c.(262-264)CTG>TTG	p.L88L	SEC14L3_uc003ahz.2_Silent_p.L11L|SEC14L3_uc003aia.2_Silent_p.L29L|SEC14L3_uc003aib.2_Silent_p.L29L	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	88	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	TAGCCACACAGGCCCCCAGGC	0.562													17	216					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30891572	30891572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30891572C>T	uc003aid.2	-	4	332	c.232G>A	c.(232-234)GAG>AAG	p.E78K	SEC14L4_uc011akz.1_Missense_Mutation_p.E78K|SEC14L4_uc003aie.2_Missense_Mutation_p.E63K|SEC14L4_uc003aif.2_Missense_Mutation_p.E24K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	78	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGGCTCACCTCAGGGGGCTGC	0.592													50	165					0	0	1	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951849	30951849	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:30951849G>A	uc003aig.1	-	4	503	c.363C>T	c.(361-363)TTC>TTT	p.F121F	GAL3ST1_uc003aih.1_Silent_p.F121F|GAL3ST1_uc003aii.1_Silent_p.F121F|GAL3ST1_uc010gvz.1_Silent_p.F121F	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	121	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						GGCTGCGGGCGAAGAAGGTCG	0.627													14	173					0	0	1	0	0
OSBP2	23762	broad.mit.edu	37	22	31283422	31283422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:31283422G>A	uc003aiy.1	+	4	1221	c.1117G>A	c.(1117-1119)GAC>AAC	p.D373N	OSBP2_uc011ala.1_Missense_Mutation_p.D208N|OSBP2_uc010gwc.1_Missense_Mutation_p.D200N|OSBP2_uc011alb.1_Missense_Mutation_p.D373N|OSBP2_uc003aiz.1_Missense_Mutation_p.D373N|OSBP2_uc003aja.1_Missense_Mutation_p.D7N|OSBP2_uc011alc.1_Missense_Mutation_p.D115N|OSBP2_uc003ajb.2_5'UTR|OSBP2_uc011ald.1_5'UTR|OSBP2_uc010gwd.1_5'UTR	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	373					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						GGCCTGCAGGGACTTCTTGGA	0.493													15	148					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32211175	32211175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:32211175C>T	uc003als.2	+	21	1785	c.1643C>T	c.(1642-1644)TCC>TTC	p.S548F	DEPDC5_uc011als.1_Missense_Mutation_p.S548F|DEPDC5_uc011alu.1_Missense_Mutation_p.S548F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.S548F|DEPDC5_uc003alr.1_Missense_Mutation_p.S548F|DEPDC5_uc011alt.1_Missense_Mutation_p.S520F	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	548					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						GTCAGCAGCTCCTTGGGATAC	0.542													15	113					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32445948	32445948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:32445948C>T	uc003amc.2	+	2	386	c.154C>T	c.(154-156)CGT>TGT	p.R52C		NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	52	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						TTCCACCAATCGTGGGACTGT	0.468													22	300					0	0	1	0	0
SLC5A4	6527	broad.mit.edu	37	22	32614620	32614620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:32614620C>T	uc003ami.2	-	15	1863	c.1861G>A	c.(1861-1863)GAA>AAA	p.E621K		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	621	Cytoplasmic (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						CTCAAGGCTTCCTCCTCCTCC	0.507													35	124					0	0	1	0	0
BPIL2	254240	broad.mit.edu	37	22	32831831	32831831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:32831831G>A	uc003amn.2	-	8	784	c.784C>T	c.(784-786)CCC>TCC	p.P262S	BPIL2_uc010gwo.2_Missense_Mutation_p.P76S|BPIL2_uc011amb.1_5'UTR	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	262						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						GGTGAGAAGGGGGGGTCGGTG	0.458													11	85					0	0	1	0	0
ISX	91464	broad.mit.edu	37	22	35478537	35478537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:35478537C>T	uc003anj.2	+	2	1207	c.256C>T	c.(256-258)CGT>TGT	p.R86C	ISX_uc011amg.1_Missense_Mutation_p.R74C	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	86	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCGGAGGGTTCGTACCACCTT	0.557													29	134					0	0	1	0	0
APOL3	80833	broad.mit.edu	37	22	36541577	36541577	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:36541577G>A	uc003aot.2	-	2	332	c.294C>T	c.(292-294)ATC>ATT	p.I98I	APOL3_uc003aoq.2_Silent_p.I27I|APOL3_uc003aor.2_Silent_p.I27I|APOL3_uc003aos.2_Silent_p.I27I|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	98					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TAGTCAGCAGGATTTGCAGAT	0.512													18	75					0	0	1	0	0
APOL3	80833	broad.mit.edu	37	22	36556777	36556778	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:36556777_36556778CC>TT	uc003aot.2	-	1	200_201	c.162_163GG>AA	c.(160-165)GTGGGA>GTAAGA	p.G55R	APOL3_uc003aoq.2_5'UTR|APOL3_uc003aor.2_5'UTR|APOL3_uc003aos.2_5'UTR|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	55					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGTGTGGATCCCACCTCCAGCC	0.505													10	131					0	0	1	0	0
CACNG2	10369	broad.mit.edu	37	22	36983535	36983535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:36983535G>A	uc003aps.1	-	2	554	c.272C>T	c.(271-273)GCT>GTT	p.A91V		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	91					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TGCTGTGTCAGCTTCGTAATC	0.483													19	214					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37465319	37465319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:37465319C>T	uc003aqs.1	-	16	2048	c.1934G>A	c.(1933-1935)GGA>GAA	p.G645E	TMPRSS6_uc003aqt.1_Missense_Mutation_p.G636E	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	645	Peptidase S1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						GGACACCTCTCCAGGCCAGCG	0.542													14	35					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37492087	37492087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:37492087G>A	uc003aqs.1	-	5	589	c.475C>T	c.(475-477)CCC>TCC	p.P159S	TMPRSS6_uc003aqt.1_Missense_Mutation_p.P150S|TMPRSS6_uc003aqu.2_Missense_Mutation_p.P150S	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	159	Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CGGTGCTCGGGGATTTGGAGA	0.627													11	81					0	0	1	0	0
RAC2	5880	broad.mit.edu	37	22	37637630	37637630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:37637630G>A	uc003arc.2	-	2	221	c.104C>T	c.(103-105)ACC>ATC	p.T35I		NM_002872	NP_002863	P15153	RAC2_HUMAN	ras-related C3 botulinum toxin substrate 2	35	Effector region (Potential).				axon guidance|platelet activation|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding			breast(2)|central_nervous_system(1)|skin(1)	4						AACTCACACGGTGGGGATGTA	0.617													21	218					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121238	38121238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:38121238C>T	uc003atr.2	+	7	2946	c.2675C>T	c.(2674-2676)CCC>CTC	p.P892L	TRIOBP_uc003atu.2_Missense_Mutation_p.P720L|TRIOBP_uc003atq.1_Missense_Mutation_p.P892L|TRIOBP_uc003ats.1_Missense_Mutation_p.P720L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	892					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TGGAACAATCCCAGGAATTCA	0.532													61	330					0	0	1	0	0
C22orf23	84645	broad.mit.edu	37	22	38349106	38349106	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:38349106C>T	uc003auj.1	-	2	142	c.51G>A	c.(49-51)CGG>CGA	p.R17R	C22orf23_uc003auk.1_Silent_p.R17R|POLR2F_uc010gxi.2_5'Flank|POLR2F_uc003aul.2_5'Flank|POLR2F_uc003aum.2_5'Flank	NM_032561	NP_115950	Q9BZE7	EVG1_HUMAN	hypothetical protein LOC84645	17											0	Melanoma(58;0.045)					TGGGGCGGCGCCGGAACCCAG	0.493													57	239					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823168	38823168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:38823168C>T	uc003avs.1	-	2	1067	c.970G>A	c.(970-972)GAG>AAG	p.E324K	KCNJ4_uc003avt.1_Missense_Mutation_p.E324K	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	324	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					CTCTTCTCCTCGAAGACCACA	0.642													5	41					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39122090	39122090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39122090C>T	uc003awg.2	+	7	1307	c.1153C>T	c.(1153-1155)CCC>TCC	p.P385S		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	385					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					CCTCCTCTCCCCCCGCACCAG	0.567													23	180					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39222561	39222561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39222561C>T	uc003awk.2	-	3	1196	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	348	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					AGTACAATCTCGTTGGCCTGC	0.672													12	157					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39224437	39224437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39224437C>T	uc003awk.2	-	2	859	c.705G>A	c.(703-705)ATG>ATA	p.M235I		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	235	Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					CCAGCTGGTCCATCTTGGAGT	0.647													5	27					0	0	1	0	0
APOBEC3A	200315	broad.mit.edu	37	22	39357683	39357683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39357683G>A	uc003awn.2	+	3	636	c.466G>A	c.(466-468)GAT>AAT	p.D156N	APOBEC3A_uc011aob.1_Missense_Mutation_p.D138N|APOBEC3A_uc011aoc.1_Missense_Mutation_p.D156N	NM_145699	NP_663745	P31941	ABC3A_HUMAN	phorbolin 1	156					cellular response to xenobiotic stimulus|defense response to virus|DNA cytosine deamination|DNA demethylation|innate immune response|negative regulation of transposition|negative regulation of viral genome replication	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					CATGACCTACGATGGTAAGAA	0.562													8	80					0	0	1	0	0
APOBEC3G	60489	broad.mit.edu	37	22	39477501	39477501	+	Silent	SNP	C	T	T	rs143077923		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39477501C>T	uc003awx.2	+	4	834	c.492C>T	c.(490-492)TTC>TTT	p.F164F	APOBEC3G_uc003awy.2_Silent_p.F97F	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	164					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding	p.F164F(1)		central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					GGAGCAAGTTCGTGTACAGCC	0.483													12	170					0	0	1	0	0
APOBEC3H	164668	broad.mit.edu	37	22	39497290	39497290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39497290G>A	uc011aoh.1	+	3	265	c.199G>A	c.(199-201)GGA>AGA	p.G67R	APOBEC3H_uc011aoi.1_5'Flank|APOBEC3H_uc003axa.3_5'Flank	NM_181773	NP_861438	Q6NTF7	ABC3H_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	67					DNA cytosine deamination|negative regulation of retroviral genome replication|negative regulation of transposition	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Melanoma(58;0.04)					CAAGTCCATGGGACTGGACGA	0.537													7	124					0	0	1	0	0
SMCR7L	54471	broad.mit.edu	37	22	39909778	39909778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39909778C>T	uc003axx.2	+	6	1340	c.842C>T	c.(841-843)TCC>TTC	p.S281F	SMCR7L_uc003axw.2_Missense_Mutation_p.S281F|SMCR7L_uc010gxz.1_Missense_Mutation_p.S103F|SMCR7L_uc003axy.2_Missense_Mutation_p.S103F	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	281						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					GCCATAGGGTCCCTCTTGGAC	0.557											OREG0026577	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	102					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966937	39966937	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:39966937C>T	uc003ayc.2	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F	CACNA1I_uc003ayd.2_Silent_p.F60F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	60	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TTGCCTTCTTCTGCCTGCGAC	0.657													42	226					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40055757	40055757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40055757C>T	uc003ayc.2	+	14	2504	c.2504C>T	c.(2503-2505)TCT>TTT	p.S835F	CACNA1I_uc003ayd.2_Missense_Mutation_p.S800F|CACNA1I_uc003aye.2_Missense_Mutation_p.S750F|CACNA1I_uc003ayf.2_Missense_Mutation_p.S715F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	835	Extracellular (Potential).|II.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GCCTCCACTTCTCCCTGGGCC	0.597													12	201					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40061553	40061553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40061553C>T	uc003ayc.2	+	22	3902	c.3902C>T	c.(3901-3903)TCC>TTC	p.S1301F	CACNA1I_uc003ayd.2_Missense_Mutation_p.S1266F|CACNA1I_uc003aye.2_Missense_Mutation_p.S1216F|CACNA1I_uc003ayf.2_Missense_Mutation_p.S1181F	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1301	Cytoplasmic (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACACTCATCTCCTCCCTCAAG	0.617													8	81					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40061578	40061578	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40061578C>T	uc003ayc.2	+	22	3927	c.3927C>T	c.(3925-3927)ATC>ATT	p.I1309I	CACNA1I_uc003ayd.2_Silent_p.I1274I|CACNA1I_uc003aye.2_Silent_p.I1224I|CACNA1I_uc003ayf.2_Silent_p.I1189I	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1309	Helical; Name=S5 of repeat III; (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCGGCAACATCGTGCTCATCT	0.622													13	79					0	0	1	0	0
GRAP2	9402	broad.mit.edu	37	22	40367082	40367082	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40367082C>T	uc003ayh.1	+	8	1250	c.987C>T	c.(985-987)ACC>ACT	p.T329T	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Silent_p.T303T|GRAP2_uc011aon.1_Silent_p.T263T|GRAP2_uc010gya.1_Silent_p.T329T|GRAP2_uc011aoo.1_Silent_p.T257T|GRAP2_uc011aop.1_Silent_p.T289T|GRAP2_uc011aoq.1_Silent_p.T216T|GRAP2_uc003ayj.1_Silent_p.T329T	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	329	SH3 2.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CACCCATGACCCGATAAACTC	0.537													6	114					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40708576	40708576	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40708576C>T	uc011aor.1	+	18	4714	c.4503C>T	c.(4501-4503)ACC>ACT	p.T1501T	TNRC6B_uc003aym.2_Silent_p.T697T|TNRC6B_uc003ayn.3_Silent_p.T1391T|TNRC6B_uc003ayo.2_Silent_p.T1248T	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1501					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CCTATGTCACCCCAGGAAGTG	0.478													32	247					0	0	1	0	0
ADSL	158	broad.mit.edu	37	22	40759030	40759030	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40759030G>A	uc003ayp.3	+	10	1115	c.1056G>A	c.(1054-1056)TTG>TTA	p.L352L	ADSL_uc003ays.3_Silent_p.L352L|ADSL_uc003ayq.3_Silent_p.L366L|ADSL_uc003ayr.3_Silent_p.L128L|ADSL_uc003ayt.3_Silent_p.L337L|ADSL_uc010gyb.1_RNA	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	352					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						ATACTATATTGAATACGCTGC	0.398													23	255					0	0	1	0	0
MKL1	57591	broad.mit.edu	37	22	40827465	40827465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:40827465C>T	uc003ayv.1	-	3	290	c.83G>A	c.(82-84)CGG>CAG	p.R28Q	MKL1_uc003ayw.1_Missense_Mutation_p.R28Q|MKL1_uc010gye.1_Missense_Mutation_p.R28Q|MKL1_uc010gyf.1_Missense_Mutation_p.R28Q	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	28	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ACGAATCTTCCGTTTGAGATA	0.483			T	RBM15	acute megakaryocytic leukemia								19	307					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41513752	41513752	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:41513752T>C	uc003azl.3	+	2	1051	c.656T>C	c.(655-657)CTG>CCG	p.L219P		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	219					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGCAACTTACTGACTGAGCCT	0.517			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				6	42					0	0	1	0	0
WBP2NL	164684	broad.mit.edu	37	22	42422880	42422880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:42422880G>A	uc011ape.1	+	7	641	c.625G>A	c.(625-627)GGA>AGA	p.G209R	WBP2NL_uc003bbt.2_Missense_Mutation_p.G209R|WBP2NL_uc011apk.1_Missense_Mutation_p.G81R|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	209	10 X 7 AA tandem repeat of Y-G-X-P-P-X-G.|Gly-rich.				egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						CCCGCCTGTGGGATACAGAGC	0.622													66	219					0	0	1	0	0
C22orf32	91689	broad.mit.edu	37	22	42477982	42477982	+	Silent	SNP	C	T	T	rs143702734	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:42477982C>T	uc003bca.2	+	2	314	c.240C>T	c.(238-240)GTC>GTT	p.V80V		NM_033318	NP_201575	Q9H4I9	CV032_HUMAN	hypothetical protein LOC91689 precursor	80	Helical; (Potential).					integral to membrane|mitochondrion				ovary(1)	1						TTCTCTATGTCGGGACACTCA	0.488													6	171					0	0	1	0	0
TTLL12	23170	broad.mit.edu	37	22	43568525	43568525	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:43568525G>A	uc003bdq.2	-	10	1409	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	TTLL12_uc003bdp.2_5'Flank|TTLL12_uc003bdr.1_Silent_p.F459F	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	459	TTL.				protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				CTTCTCGAAGGAACAACACGG	0.582													15	112					0	0	1	0	0
TTLL12	23170	broad.mit.edu	37	22	43570582	43570582	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:43570582G>A	uc003bdq.2	-	7	989	c.957C>T	c.(955-957)ACC>ACT	p.T319T	TTLL12_uc003bdr.1_Silent_p.T319T	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	319	TTL.				protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				AGCGCGGGTGGGTGAGGCTGC	0.647													8	109					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43607032	43607032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:43607032G>A	uc003bdt.1	-	18	2367	c.2279C>T	c.(2278-2280)CCC>CTC	p.P760L		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	760					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GGTGCCGACGGGGCAGCGGAT	0.652													5	71					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43936104	43936104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:43936104C>T	uc003bdy.1	-	28	3997	c.3782G>A	c.(3781-3783)GGG>GAG	p.G1261E	EFCAB6_uc003bdz.1_Missense_Mutation_p.G1109E|EFCAB6_uc010gzi.1_Missense_Mutation_p.G1109E|EFCAB6_uc010gzj.1_3'UTR	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1261					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GACACTGCTCCCTCTCTGGGC	0.617													8	98					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43976448	43976448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:43976448C>T	uc003bdy.1	-	25	3339	c.3124G>A	c.(3124-3126)GAA>AAA	p.E1042K	EFCAB6_uc003bdz.1_Missense_Mutation_p.E890K|EFCAB6_uc010gzi.1_Missense_Mutation_p.E890K|EFCAB6_uc010gzj.1_Missense_Mutation_p.E268K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1042					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCTTCTTTTTCCTTGGGCTGA	0.502													15	338					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44004434	44004434	+	Missense_Mutation	SNP	C	T	T	rs147806364		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:44004434C>T	uc003bdy.1	-	22	2824	c.2609G>A	c.(2608-2610)CGG>CAG	p.R870Q	EFCAB6_uc003bdz.1_Missense_Mutation_p.R718Q|EFCAB6_uc010gzi.1_Missense_Mutation_p.R718Q|EFCAB6_uc010gzj.1_Intron	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	870	EF-hand 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTTTATGTCCCGGCGTCGAAG	0.438													17	62					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44168907	44168907	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:44168907C>T	uc003bdy.1	-	4	431	c.216G>A	c.(214-216)GGG>GGA	p.G72G	EFCAB6_uc003bdz.1_Intron|EFCAB6_uc010gzi.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Silent_p.G69G|EFCAB6_uc003beb.3_Intron	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	72	EF-hand 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GCAACTCATCCCCTCTGTCGG	0.408													4	117					0	0	1	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258223	45258223	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:45258223G>A	uc003bfd.2	+	17	1952	c.1680G>A	c.(1678-1680)TTG>TTA	p.L560L	PRR5-ARHGAP8_uc003bfc.2_Silent_p.L481L|PRR5-ARHGAP8_uc011aqi.1_Silent_p.L472L|PRR5-ARHGAP8_uc011aqj.1_Silent_p.L403L|ARHGAP8_uc010gzv.2_3'UTR|ARHGAP8_uc003bfj.2_Silent_p.L381L|ARHGAP8_uc003bfk.2_Silent_p.L350L|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GGCTGAATTTGATCTGGCCAT	0.522													9	120					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45309722	45309722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:45309722G>A	uc003bfn.2	-	5	962	c.811C>T	c.(811-813)CCG>TCG	p.P271S	PHF21B_uc003bfm.2_Missense_Mutation_p.P67S|PHF21B_uc011aqk.1_Missense_Mutation_p.P217S|PHF21B_uc011aql.1_Missense_Mutation_p.P229S|PHF21B_uc011aqm.1_Missense_Mutation_p.P217S	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	271							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		TCCTGGGTCGGGGGCCGGTCT	0.662													15	67					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45938072	45938072	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:45938072G>A	uc003bgj.1	+	10	1251	c.1104G>A	c.(1102-1104)GGG>GGA	p.G368G	FBLN1_uc003bgg.1_Silent_p.G368G|FBLN1_uc003bgh.2_Silent_p.G368G|FBLN1_uc010gzz.2_Silent_p.G406G|FBLN1_uc003bgi.1_Silent_p.G368G	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	368	EGF-like 5; calcium-binding.|Self-association and FN1-binding; calcium is necessary for homotypic binding, but not for heterotypic binding.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		AGCCCTGTGGGAAGGGACATC	0.542													17	254					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654470	46654470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:46654470C>T	uc003bhh.2	-	1	4750	c.4750G>A	c.(4750-4752)GTT>ATT	p.V1584I		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1584	Helical; (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GTAGCAAAAACCAAAAACCAT	0.423													10	88					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50662616	50662616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:50662616C>T	uc003bkb.1	-	13	2736	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	TUBGCP6_uc003bka.1_5'Flank|TUBGCP6_uc010har.1_Missense_Mutation_p.E742K|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'UTR|TUBGCP6_uc003bkd.1_Missense_Mutation_p.E96K	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	742					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AGCCTTCTCTCCCTGTCTCGG	0.637													5	75					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50716154	50716154	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:50716154A>G	uc003bkv.3	-	33	5168	c.5062T>C	c.(5062-5064)TTC>CTC	p.F1688L	PLXNB2_uc003bkt.1_Missense_Mutation_p.F480L|PLXNB2_uc003bku.1_Missense_Mutation_p.F673L	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1688	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TTCACCCAGAACCGGAGCGGT	0.637													13	153					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728628	50728628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:50728628G>A	uc003bkv.3	-	3	492	c.386C>T	c.(385-387)TCC>TTC	p.S129F		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	129	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGGCGGAGGGAGATGTTGCT	0.652													3	41					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50832478	50832478	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:50832478C>T	uc003blb.1	+	4	563	c.141C>T	c.(139-141)TTC>TTT	p.F47F	SAPS2_uc003bky.1_Silent_p.F47F|SAPS2_uc003bkz.1_Silent_p.F47F|SAPS2_uc003blc.2_Silent_p.F47F|SAPS2_uc003bla.1_Silent_p.F47F	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	47						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		TGCTGGACTTCCTGTGCAGGC	0.542													26	274					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50873432	50873432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:50873432C>T	uc003blb.1	+	14	1860	c.1438C>T	c.(1438-1440)CTC>TTC	p.L480F	SAPS2_uc003bky.1_Missense_Mutation_p.L480F|SAPS2_uc003bkz.1_Missense_Mutation_p.L480F|SAPS2_uc003blc.2_Missense_Mutation_p.L480F|SAPS2_uc003bla.1_Missense_Mutation_p.L481F|SAPS2_uc003bld.1_Missense_Mutation_p.L39F	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	480						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		CATGGGCCACCTCACACGGAT	0.672													8	46					0	0	1	0	0
ACR	49	broad.mit.edu	37	22	51183265	51183265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr22:51183265C>T	uc003bnh.3	+	5	908	c.896C>T	c.(895-897)TCG>TTG	p.S299L		NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	299					acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		ATGATTCAATCGGCCACCCCT	0.602													5	24					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3137042	3137042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:3137042G>A	uc011ask.1	-	9	1440	c.796C>T	c.(796-798)CCA>TCA	p.P266S	IL5RA_uc010hbq.2_Intron|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.P266S|IL5RA_uc011asl.1_Missense_Mutation_p.P266S|IL5RA_uc011asm.1_Missense_Mutation_p.P266S|IL5RA_uc010hbt.2_Missense_Mutation_p.P266S|IL5RA_uc011asn.1_Missense_Mutation_p.P266S|IL5RA_uc010hbu.2_Missense_Mutation_p.P266S|IL5RA_uc010hbp.2_5'Flank	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	266	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		CAATGGATTGGAAAAGCAGAC	0.353													3	45					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887537	3887537	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:3887537A>G	uc003bpt.3	+	2	1973	c.1212A>G	c.(1210-1212)GAA>GAG	p.E404E	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	404	LRRCT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TGCCGCCCGAATATAAAGGGC	0.493													9	73					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4703814	4703814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:4703814C>T	uc003bqa.2	+	15	1648	c.1300C>T	c.(1300-1302)CCG>TCG	p.P434S	ITPR1_uc010hca.1_Missense_Mutation_p.P419S|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.P419S	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	434	MIR 5.|Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TGCCATAGTTCCGGTTTCTCC	0.507													9	73					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4810403	4810403	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:4810403C>T	uc003bqa.2	+	43	6138	c.5790C>T	c.(5788-5790)CTC>CTT	p.L1930L	ITPR1_uc010hca.1_Silent_p.L1915L|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.L900L	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1978	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGCCCATCCTCCGCTTCCTTC	0.642													18	115					0	0	1	0	0
BHLHE40	8553	broad.mit.edu	37	3	5025282	5025282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:5025282C>T	uc003bqf.2	+	5	1451	c.1144C>T	c.(1144-1146)CCT>TCT	p.P382S	BHLHE40_uc011asw.1_Missense_Mutation_p.P242S	NM_003670	NP_003661	O14503	BHE40_HUMAN	basic helix-loop-helix family, member e40	382						Golgi apparatus|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCAGAGACTCCCTTCTCCCTT	0.547													13	160					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9027575	9027575	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:9027575C>T	uc003brf.1	-	22	3604	c.2928G>A	c.(2926-2928)CGG>CGA	p.R976R	SRGAP3_uc003brg.1_Silent_p.R952R	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	976	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TCTCGAGTTCCCGCAACTCGT	0.642			T	RAF1	pilocytic astrocytoma								5	72					0	0	1	0	0
THUMPD3	25917	broad.mit.edu	37	3	9412785	9412785	+	Silent	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:9412785C>A	uc003bro.3	+	4	520	c.372C>A	c.(370-372)CTC>CTA	p.L124L	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Silent_p.L124L	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	124							methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		CTGGAAAACTCCCATGGTCAA	0.323													9	95					0.00010058	0.000101231	1	1	0
CPNE9	151835	broad.mit.edu	37	3	9754728	9754728	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:9754728C>T	uc003bsd.2	+	9	786	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	205	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					CCTTCAGCATCCCTGTGCGGG	0.537													6	66					0	0	1	0	0
BRPF1	7862	broad.mit.edu	37	3	9784840	9784840	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:9784840C>T	uc003bse.2	+	7	2595	c.2196C>T	c.(2194-2196)GCC>GCT	p.A732A	BRPF1_uc003bsf.2_Silent_p.A738A|BRPF1_uc003bsg.2_Silent_p.A732A|BRPF1_uc011ati.1_Silent_p.A732A	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	732	Required for RUNX1 and RUNX2 transcriptional activation.|Interaction with MEAF6 and ING5.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					TCCGCCAGGCCCGGCGCCAGG	0.587													6	65					0	0	1	0	0
BRPF1	7862	broad.mit.edu	37	3	9789031	9789031	+	Nonstop_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:9789031T>C	uc003bse.2	+	14	4042	c.3643T>C	c.(3643-3645)TGA>CGA	p.*1215R	BRPF1_uc003bsf.2_Nonstop_Mutation_p.*1221R|BRPF1_uc003bsg.2_Nonstop_Mutation_p.*1214R|BRPF1_uc011ati.1_Nonstop_Mutation_p.*1120R|OGG1_uc003bsh.2_5'Flank|OGG1_uc003bsi.2_5'Flank|OGG1_uc003bsj.2_5'Flank|OGG1_uc003bsk.2_5'Flank|OGG1_uc003bsl.2_5'Flank|OGG1_uc003bsm.2_5'Flank|OGG1_uc003bsn.2_5'Flank|OGG1_uc003bso.2_5'Flank	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	1215					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					CGATAGTGATTGATACTGCTC	0.562													15	123					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10387232	10387232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:10387232C>T	uc003bvt.2	-	18	2978	c.2539G>A	c.(2539-2541)GAG>AAG	p.E847K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E802K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E802K|ATP2B2_uc010hdo.2_Missense_Mutation_p.E552K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	847	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCTGAGGCCTCCTTGGCCACG	0.587													6	71					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10391803	10391803	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:10391803C>T	uc003bvt.2	-	16	2836	c.2397G>A	c.(2395-2397)CTG>CTA	p.L799L	ATP2B2_uc003bvv.2_Silent_p.L754L|ATP2B2_uc003bvw.2_Silent_p.L754L|ATP2B2_uc010hdo.2_Silent_p.L504L	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	799	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TACCTTTAACCAGGGTATGCT	0.597													8	67					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059122	11059122	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:11059122G>A	uc010hdq.2	+	3	636	c.225G>A	c.(223-225)GGG>GGA	p.G75G		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	75					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	ATCTCTGCGGGAAAAATGGTG	0.607													8	92					0	0	1	0	0
TIMP4	7079	broad.mit.edu	37	3	12198407	12198407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:12198407C>T	uc003bwo.2	-	3	572	c.265G>A	c.(265-267)GAT>AAT	p.D89N	SYN2_uc003bwl.1_Intron|SYN2_uc003bwm.2_Intron|SYN2_uc003bwn.2_Intron	NM_003256	NP_003247	Q99727	TIMP4_HUMAN	tissue inhibitor of metalloproteinase 4	89	NTR.						metal ion binding|metalloendopeptidase inhibitor activity				0						TACTGAACATCCTTGACTTTC	0.388													4	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	12299801	12299801	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:12299801G>A	uc003bwp.1	-	1		c.152C>T				NR_003112				NR_003112																		GGCCCAGCTTGAATTTTTAAT	0.488													13	99					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14755604	14755604	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:14755604C>T	uc003byy.2	+	8	1655	c.1251C>T	c.(1249-1251)TTC>TTT	p.F417F	C3orf20_uc003byz.2_Silent_p.F295F|C3orf20_uc003bza.2_Silent_p.F295F|C3orf20_uc003bzb.1_5'UTR	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	417						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TACCTGGATTCTCCTTGCTGG	0.498													7	74					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14756823	14756823	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:14756823G>A	uc003byy.2	+	9	1745	c.1341G>A	c.(1339-1341)GAG>GAA	p.E447E	C3orf20_uc003byz.2_Silent_p.E325E|C3orf20_uc003bza.2_Silent_p.E325E|C3orf20_uc003bzb.1_5'UTR	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	447						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TCTTGGATGAGGAAGGTGGGA	0.537													3	32					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14802994	14802994	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:14802994G>A	uc003byy.2	+	15	2771	c.2367G>A	c.(2365-2367)GGG>GGA	p.G789G	C3orf20_uc003byz.2_Silent_p.G667G|C3orf20_uc003bza.2_Silent_p.G667G|C3orf20_uc003bzb.1_Silent_p.G290G|C3orf20_uc011avj.1_Silent_p.G116G	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	789	Helical; (Potential).					cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TTGCCGGGGGGAAGCTCATTT	0.483													6	62					0	0	1	0	0
GALNTL2	117248	broad.mit.edu	37	3	16242265	16242265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:16242265G>A	uc003car.3	+	3	1321	c.846G>A	c.(844-846)ATG>ATA	p.M282I	GALNTL2_uc003caq.3_Missense_Mutation_p.M15I	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	282	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						TCGTCTTCATGGATGCCCACT	0.607													4	44					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17051844	17051844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:17051844C>T	uc011awc.1	+	5	1087	c.982C>T	c.(982-984)CAT>TAT	p.H328Y	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.H210Y	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	336					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGAGGTTTTTCATGAGCTTTG	0.338													11	33					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19554712	19554712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:19554712C>T	uc003cbk.1	+	13	2525	c.2330C>T	c.(2329-2331)ACC>ATC	p.T777I	KCNH8_uc010hex.1_Missense_Mutation_p.T238I	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	777	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TCCCCCAAAACCAAGCAGGAA	0.468													4	48					0	0	1	0	0
RARB	5915	broad.mit.edu	37	3	25637940	25637940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:25637940G>A	uc011awl.1	+	8	1267	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K	RARB_uc003cdi.1_Missense_Mutation_p.E282K|RARB_uc003cdh.2_Missense_Mutation_p.E394K	NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	401	Ligand-binding.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	CTTGAAAATGGAAATTCCTGG	0.413													11	85					0	0	1	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751407	26751407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:26751407G>A	uc003cdp.2	+	2	833	c.244G>A	c.(244-246)GAA>AAA	p.E82K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E82K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	82	LRR 1.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TATTCCCAATGAAATTTTTAA	0.408													4	27					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32931962	32931962	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:32931962G>A	uc003cff.2	+	4	1329	c.1266G>A	c.(1264-1266)CTG>CTA	p.L422L		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	422	Potential.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						AGCAGGTCCTGGAGGAGGGTA	0.617													5	55					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35729346	35729346	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:35729346A>T	uc003cgb.2	+	6	641	c.377A>T	c.(376-378)GAA>GTA	p.E126V	ARPP21_uc003cga.2_Missense_Mutation_p.E126V|ARPP21_uc011axy.1_Missense_Mutation_p.E126V|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	126						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AAAACCTCTGAAAAACCCAAG	0.348													9	71					0	0	1	0	0
STAC	6769	broad.mit.edu	37	3	36547238	36547239	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36547238_36547239GG>AT	uc003cgh.1	+	8	871_872	c.832_833GG>AT	c.(832-834)GGA>ATA	p.G278I	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.G217I	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	278					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						tctctttcAGGGATCTCTTTCC	0.223													5	26					0	0	1	0	0
STAC	6769	broad.mit.edu	37	3	36587747	36587747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36587747G>A	uc003cgh.1	+	11	1214	c.1175G>A	c.(1174-1176)GGC>GAC	p.G392D	STAC_uc011aya.1_Missense_Mutation_p.G331D	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	392					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						AAAAAGAAAGGCCTCATCCCC	0.443													5	61					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779958	36779958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36779958C>T	uc003cgi.2	-	2	684	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	65						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CCTGCAACTTCGCTGCAGCTC	0.612													11	132					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874065	36874065	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36874065A>T	uc003cgj.2	-	12	5529	c.5227T>A	c.(5227-5229)TTC>ATC	p.F1743I		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2293					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GAGAGAAGGAAAGCTTGCATG	0.493													4	34					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874242	36874242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36874242G>A	uc003cgj.2	-	12	5352	c.5050C>T	c.(5050-5052)CAT>TAT	p.H1684Y		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2234					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACTCTCTGATGGAAATGCTTA	0.373													13	87					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898331	36898331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36898331G>A	uc003cgj.2	-	3	1402	c.1100C>T	c.(1099-1101)GCC>GTC	p.A367V		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	917					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCGGTTGTAGGCATTGCAGAT	0.478													6	41					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36899249	36899249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:36899249C>T	uc003cgj.2	-	3	484	c.182G>A	c.(181-183)AGG>AAG	p.R61K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	611					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGCCGGCTCCTCCTCCTGTT	0.542													8	117					0	0	1	0	0
ACVR2B	93	broad.mit.edu	37	3	38523757	38523757	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38523757C>T	uc003cif.2	+	9	1167	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	ACVR2B_uc003cig.2_Silent_p.F172F	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	381	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		GAGATGCCTTCCTGCGCATTG	0.567													7	41					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38627372	38627372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38627372G>A	uc003cio.2	-	16	2791	c.2597C>T	c.(2596-2598)TCG>TTG	p.S866L	SCN5A_uc003cin.2_Missense_Mutation_p.S866L|SCN5A_uc003cil.3_Missense_Mutation_p.S866L|SCN5A_uc010hhi.2_Missense_Mutation_p.S866L|SCN5A_uc010hhk.2_Missense_Mutation_p.S866L|SCN5A_uc011ayr.1_Missense_Mutation_p.S866L|SCN5A_uc010hhj.1_Missense_Mutation_p.S477L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	866					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCTCAGCTCCGAGTAGTTCTT	0.567													22	175					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38639247	38639247	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38639247G>A	uc003cio.2	-	14	2429	c.2235C>T	c.(2233-2235)TTC>TTT	p.F745F	SCN5A_uc003cin.2_Silent_p.F745F|SCN5A_uc003cil.3_Silent_p.F745F|SCN5A_uc010hhi.2_Silent_p.F745F|SCN5A_uc010hhk.2_Silent_p.F745F|SCN5A_uc011ayr.1_Silent_p.F745F|SCN5A_uc010hhj.1_Silent_p.F356F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	745					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCATCTCCTCGAATTCACTTG	0.562													9	92					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38671833	38671833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38671833G>A	uc003cio.2	-	3	555	c.361C>T	c.(361-363)CGG>TGG	p.R121W	SCN5A_uc003cin.2_Missense_Mutation_p.R121W|SCN5A_uc003cil.3_Missense_Mutation_p.R121W|SCN5A_uc010hhi.2_Missense_Mutation_p.R121W|SCN5A_uc010hhk.2_Missense_Mutation_p.R121W|SCN5A_uc011ayr.1_Missense_Mutation_p.R121W	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	121					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCCGCTCTCCGGATGGGGTGG	0.552													9	156					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739953	38739953	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38739953C>T	uc003ciq.2	-	27	4758	c.4758G>A	c.(4756-4758)CTG>CTA	p.L1586L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1586	IV.|Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCGCTCGGATCAGTCTGAGGA	0.527													6	108					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38752383	38752383	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38752383G>A	uc003ciq.2	-	23	4095	c.4095C>T	c.(4093-4095)ACC>ACT	p.T1365T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1365	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGCCTTTAAAGGTTGCCTGGA	0.552													6	26					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38770288	38770289	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38770288_38770289GG>AA	uc003ciq.2	-	15	2384_2385	c.2384_2385CC>TT	c.(2383-2385)GCC>GTT	p.A795V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	795	Helical; Name=S5 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGACAATGATGGCCAGGATGAT	0.525													10	105					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38793909	38793909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38793909C>T	uc003ciq.2	-	11	1556	c.1556G>A	c.(1555-1557)GGA>GAA	p.G519E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	519					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ATCTGTGACTCCCTCAGGGAG	0.607													8	42					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38797432	38797432	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38797432C>T	uc003ciq.2	-	10	1308	c.1308G>A	c.(1306-1308)GGG>GGA	p.G436G		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	436					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTGTGTCAATCCCTAGTGCTG	0.498													5	76					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38912193	38912193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38912193C>T	uc011ays.1	-	22	4001	c.3802G>A	c.(3802-3804)GAT>AAT	p.D1268N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1268	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTGTGGAATCAACAGCTGCA	0.403													9	78					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38949510	38949510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38949510G>A	uc011ays.1	-	10	1602	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	468					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAAAAAGAAGGACTTCCTTTT	0.398													6	61					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38950548	38950548	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38950548C>T	uc011ays.1	-	9	1438	c.1239G>A	c.(1237-1239)GAG>GAA	p.E413E		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	413					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGGCCTCTATCTCTGCAGCTA	0.488													17	112					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38962605	38962605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:38962605G>A	uc011ays.1	-	6	1053	c.854C>T	c.(853-855)TCG>TTG	p.S285L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	285	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACAGTCCCTCGAGATGCATTT	0.438													16	218					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39226748	39226748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:39226748G>A	uc003cjk.1	-	2	4410	c.4189C>T	c.(4189-4191)CCC>TCC	p.P1397S	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P80S	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1397							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGTAAGCTGGGCTGGCTATGT	0.597													9	69					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40231452	40231452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:40231452C>T	uc003cka.2	+	10	1298	c.1163C>T	c.(1162-1164)TCT>TTT	p.S388F	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.S388F|MYRIP_uc010hhw.2_Missense_Mutation_p.S299F|MYRIP_uc011ayz.1_Missense_Mutation_p.S201F|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	388	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		AGTGTGGCATCTGCCTACGAT	0.637													10	58					0	0	1	0	0
TRAK1	22906	broad.mit.edu	37	3	42264536	42264536	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:42264536C>T	uc003cky.2	+	16	2385	c.2169C>T	c.(2167-2169)TCC>TCT	p.S723S	TRAK1_uc011azi.1_Silent_p.S702S	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	723					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						TGGCTGAGTCCTTCACTAACA	0.607													9	93					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916461	42916461	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:42916461G>T	uc003cmh.2	-	1	1173	c.848C>A	c.(847-849)TCC>TAC	p.S283Y	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.S283Y	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	283					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GTTCCCCTGGGAGGCCCAGAG	0.582													5	23					0.217242	0.217511	1	1	0
CYP8B1	1582	broad.mit.edu	37	3	42916897	42916897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:42916897C>T	uc003cmh.2	-	1	737	c.412G>A	c.(412-414)GAT>AAT	p.D138N	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.D138N	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	138					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TCATTAAGATCCTTCAAGCCA	0.517													16	121					0	0	1	0	0
C3orf39	84892	broad.mit.edu	37	3	43121648	43121648	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:43121648G>A	uc003cmq.1	-	2	1417	c.1276C>T	c.(1276-1278)CTG>TTG	p.L426L	C3orf39_uc003cmr.1_Silent_p.L426L	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	426						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		CGGCTTTGCAGGATACGGGCT	0.612													10	38					0	0	1	0	0
ZNF445	353274	broad.mit.edu	37	3	44490126	44490126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:44490126G>A	uc003cnf.2	-	8	1385	c.1037C>T	c.(1036-1038)TCT>TTT	p.S346F	ZNF445_uc011azv.1_Missense_Mutation_p.S334F|ZNF445_uc011azw.1_Missense_Mutation_p.S346F	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	346					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		AATTCCCTCAGAAACACTTGT	0.408													14	73					0	0	1	0	0
ZNF167	55888	broad.mit.edu	37	3	44598665	44598665	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:44598665C>T	uc010hin.2	+	2	514	c.126C>T	c.(124-126)CTC>CTT	p.L42L	ZNF167_uc003cnh.2_RNA|ZNF167_uc003cni.2_Silent_p.L42L|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Silent_p.L42L|ZNF167_uc003cnk.2_Silent_p.L42L	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	42					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		GCAGCAGTCTCCAGAAGAACT	0.577													14	67					0	0	1	0	0
ZNF502	91392	broad.mit.edu	37	3	44762533	44762533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:44762533C>T	uc011baa.1	+	4	479	c.224C>T	c.(223-225)TCA>TTA	p.S75L	ZNF502_uc003cns.2_Missense_Mutation_p.S75L|ZNF502_uc011bab.1_Missense_Mutation_p.S75L|ZNF502_uc003cnt.2_Missense_Mutation_p.S75L	NM_001134440	NP_001127912	Q8TBZ5	ZN502_HUMAN	zinc finger protein 502	75					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00855)|KIRC - Kidney renal clear cell carcinoma(197;0.0471)|Kidney(197;0.0589)		ATTGCTGAATCATGCCTTTTC	0.388													7	63					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45134898	45134898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:45134898G>A	uc003com.2	-	6	1633	c.1498C>T	c.(1498-1500)CCG>TCG	p.P500S		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	500	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GAGCCTCCCGGGCAGAAGGAG	0.597													4	77					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45135121	45135121	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:45135121C>T	uc003com.2	-	6	1410	c.1275G>A	c.(1273-1275)AGG>AGA	p.R425R		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	425	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		AGTAGGATTTCCTTTGGCAGT	0.597													18	272					0	0	1	0	0
XCR1	2829	broad.mit.edu	37	3	46062858	46062858	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46062858G>A	uc003cpe.2	-	3	806	c.582C>T	c.(580-582)TTC>TTT	p.F194F	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Silent_p.F194F	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	194	Helical; Name=5; (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GGGACAGCAGGAAGAAGAGGT	0.567													4	53					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46245421	46245421	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46245421C>T	uc003cph.1	-	2	455	c.384G>A	c.(382-384)ACG>ACA	p.T128T	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	128	Helical; Name=3; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity	p.T128M(1)		skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		ACCTGTCAATCGTCAGCAGGA	0.512													7	40					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399709	46399709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46399709C>T	uc003cpn.3	+	2	1176	c.691C>T	c.(691-693)CGG>TGG	p.R231W	CCR2_uc003cpm.3_Missense_Mutation_p.R231W	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	231	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		AACCCTGCTTCGGTGTCGAAA	0.448													29	220					0	0	1	0	0
CCRL2	9034	broad.mit.edu	37	3	46450225	46450225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46450225C>T	uc003cpp.3	+	2	940	c.655C>T	c.(655-657)CTC>TTC	p.L219F	CCRL2_uc010hjg.2_Missense_Mutation_p.L231F|CCRL2_uc010hjf.2_Missense_Mutation_p.L219F	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	219	Helical; Name=5; (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		TTTTACATTTCTCTATGTGCA	0.403													20	139					0	0	1	0	0
RTP3	83597	broad.mit.edu	37	3	46542102	46542102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46542102C>T	uc003cps.1	+	2	480	c.412C>T	c.(412-414)CCT>TCT	p.P138S		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	138	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		AGAGGAGGTTCCTATGATCAA	0.458													4	91					0	0	1	0	0
PRSS50	29122	broad.mit.edu	37	3	46755771	46755772	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:46755771_46755772CC>TT	uc003cqe.1	-	4	749_750	c.690_691GG>AA	c.(688-693)ACGGAC>ACAAAC	p.D231N	PRSS50_uc003cqf.1_Missense_Mutation_p.D145N	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	231	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						AACACATAGTCCGTGCCAGGCA	0.604													5	112					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47147570	47147570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:47147570G>A	uc003cqs.2	-	6	4809	c.4756C>T	c.(4756-4758)CAT>TAT	p.H1586Y	SETD2_uc003cqv.2_Missense_Mutation_p.H1575Y	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1586	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		AACTCTTTATGATCGAGTACC	0.393			N|F|S|Mis		clear cell renal carcinoma								10	61					0	0	1	0	0
KIF9	64147	broad.mit.edu	37	3	47284733	47284733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:47284733G>A	uc010hjp.2	-	17	2121	c.1517C>T	c.(1516-1518)TCC>TTC	p.S506F	KIF9_uc003cqx.2_Missense_Mutation_p.S506F|KIF9_uc003cqy.2_Intron|KIF9_uc011bat.1_Intron|uc003cqw.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	506					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TCTTGCCAAGGAGCTGGAAGA	0.542													3	19					0	0	1	0	0
KLHL18	23276	broad.mit.edu	37	3	47385231	47385231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:47385231C>T	uc003crd.2	+	10	1651	c.1525C>T	c.(1525-1527)CCC>TCC	p.P509S	KLHL18_uc011bav.1_Missense_Mutation_p.P397S	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	509	Kelch 5.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		CCTGATTGTCCCCATGCACAC	0.617													8	93					0	0	1	0	0
ZNF589	51385	broad.mit.edu	37	3	48310173	48310173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:48310173C>T	uc003csl.3	+	4	1058	c.992C>T	c.(991-993)TCG>TTG	p.S331L	ZNF589_uc010hjt.1_Missense_Mutation_p.S328L|ZNF589_uc003csn.2_RNA|ZNF589_uc011bbg.1_Intron|ZNF589_uc003csm.2_Intron	NM_016089	NP_057173	Q86UQ0	ZN589_HUMAN	zinc finger protein 589	331					regulation of transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000649)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGGAGAAATCGTTTATGTGC	0.502													13	142					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48617232	48617232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:48617232C>T	uc003ctz.2	-	57	5141	c.5140G>A	c.(5140-5142)GGA>AGA	p.G1714R	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1714	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCTGGCTCCAGGTCCTGTG	0.582													19	113					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48629120	48629120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:48629120G>A	uc003ctz.2	-	11	1494	c.1493C>T	c.(1492-1494)ACC>ATC	p.T498I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	498	Nonhelical region (NC1).|Fibronectin type-III 3.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGAACCACGGTTGCAGGGGT	0.652													12	72					0	0	1	0	0
P4HTM	54681	broad.mit.edu	37	3	49044310	49044310	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49044310G>A	uc003cvg.2	+	9	1828	c.1479G>A	c.(1477-1479)CGG>CGA	p.R493R	P4HTM_uc003cvh.2_Silent_p.R554R|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	493	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	CTCTGGACCGGGCCTACCGCG	0.687													3	35					0	0	1	0	0
CCDC71	64925	broad.mit.edu	37	3	49201459	49201459	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49201459T>G	uc003cwg.3	-	2	321	c.183A>C	c.(181-183)CAA>CAC	p.Q61H		NM_022903	NP_075054	Q8IV32	CCD71_HUMAN	coiled-coil domain containing 71	61										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GGATGGTAGGTTGGAAGCCAT	0.552													8	82					0	0	1	0	0
USP4	7375	broad.mit.edu	37	3	49323748	49323748	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49323748C>T	uc003cwq.2	-	16	2062	c.1983G>A	c.(1981-1983)GAG>GAA	p.E661E	USP4_uc003cwo.2_Silent_p.E373E|USP4_uc003cwp.2_Silent_p.E391E|USP4_uc003cwr.2_Silent_p.E614E	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	661					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		CCATTTCTTCCTCATCTTCTC	0.383													4	39					0	0	1	0	0
USP4	7375	broad.mit.edu	37	3	49339953	49339953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49339953G>A	uc003cwq.2	-	10	1230	c.1151C>T	c.(1150-1152)CCT>CTT	p.P384L	USP4_uc003cwo.2_Missense_Mutation_p.P114L|USP4_uc003cwp.2_Missense_Mutation_p.P114L|USP4_uc003cwr.2_Missense_Mutation_p.P337L	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	384					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		AGAAAATTGAGGAGCAAAACG	0.393													5	39					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49662469	49662469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49662469C>T	uc003cxe.3	+	2	400	c.286C>T	c.(286-288)CCG>TCG	p.P96S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	96					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TTCCCCAACTCCGAAGCAGGC	0.582													8	61					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49691340	49691340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49691340G>A	uc003cxe.3	+	5	4465	c.4351G>A	c.(4351-4353)GAG>AAG	p.E1451K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1451					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGCTGCTAGAGAGAAGCCCTT	0.597													15	120					0	0	1	0	0
APEH	327	broad.mit.edu	37	3	49718605	49718605	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:49718605C>T	uc003cxf.2	+	15	1771	c.1371C>T	c.(1369-1371)CCC>CCT	p.P457P	APEH_uc010hkw.1_Silent_p.P457P	NM_001640	NP_001631	P13798	ACPH_HUMAN	N-acylaminoacyl-peptide hydrolase	457					proteolysis	cytoplasm|nuclear membrane	serine-type endopeptidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGGCCGAGCCCATTCCCGACA	0.592													8	72					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50255384	50255384	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:50255384C>T	uc003cyn.3	+	11	1032	c.891C>T	c.(889-891)TTC>TTT	p.F297F	SLC38A3_uc011bdl.1_Silent_p.F272F|SLC38A3_uc011bdm.1_Silent_p.F228F	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	297					cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	CCTTCGCCTTCGTCTGCCACC	0.617													4	70					0	0	1	0	0
CYB561D2	11068	broad.mit.edu	37	3	50391078	50391078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:50391078C>T	uc003dak.2	+	3	1148	c.572C>T	c.(571-573)GCC>GTC	p.A191V	NPRL2_uc003dai.1_5'Flank|NPRL2_uc003daj.1_5'Flank|CYB561D2_uc003dal.2_Missense_Mutation_p.A191V|CYB561D2_uc003dam.2_Missense_Mutation_p.A191V	NM_007022	NP_008953	O14569	C56D2_HUMAN	cytochrome b-561 domain containing 2	191	Cytochrome b561.|Helical; (Potential).				electron transport chain|transport	integral to membrane	metal ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		ACTGGTGCAGCCTGGTACCTG	0.552													29	225					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51251579	51251579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:51251579C>T	uc011bds.1	+	14	1176	c.1153C>T	c.(1153-1155)CGT>TGT	p.R385C		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	385						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCAGCTTCTTCGTGGAGACAT	0.383													3	25					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51378816	51378816	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:51378816G>A	uc011bds.1	+	38	3938	c.3915G>A	c.(3913-3915)AAG>AAA	p.K1305K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1305	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACAAAGGCAAGGTATGCATCA	0.532													3	33					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51387802	51387802	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:51387802G>A	uc011bds.1	+	40	4109	c.4086G>A	c.(4084-4086)AGG>AGA	p.R1362R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1362	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCTATGGCAGGAAGTTTCCTT	0.428													12	80					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51393609	51393609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:51393609C>T	uc011bds.1	+	42	4362	c.4339C>T	c.(4339-4341)CGC>TGC	p.R1447C		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1447	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GAGCTTCTATCGCGTCAACAA	0.478													6	71					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51749584	51749584	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:51749584A>G	uc010hlv.2	+	4	2034	c.1795A>G	c.(1795-1797)AAG>GAG	p.K599E	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	599	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	ACCAGTGGTCAAGGCCTCAGG	0.602													14	131					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52469918	52469918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52469918G>A	uc003dea.1	-	16	2050	c.2050C>T	c.(2050-2052)CCT>TCT	p.P684S		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	684					multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GGCTCCGGAGGGAACAGGTTG	0.642													11	127					0	0	1	0	0
TNNC1	7134	broad.mit.edu	37	3	52485521	52485521	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52485521G>A	uc003deb.2	-	5	366	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_003280	NP_003271	P63316	TNNC1_HUMAN	troponin C, slow	114	EF-hand 3.|2.				cardiac muscle contraction|muscle filament sliding|regulation of ATPase activity|regulation of muscle filament sliding speed|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin filament binding|calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|troponin I binding|troponin T binding				0				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00175)|KIRC - Kidney renal clear cell carcinoma(197;0.00198)|OV - Ovarian serous cystadenocarcinoma(275;0.0525)	Bepridil(DB01244)|Dihydroxyaluminium(DB01375)|Levosimendan(DB00922)	AGCTCATCCAGGTCGATGTAG	0.612													7	83					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52541961	52541961	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52541961G>A	uc003dej.2	+	20	2141	c.2067G>A	c.(2065-2067)AAG>AAA	p.K689K	STAB1_uc003dei.1_Silent_p.K689K	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	689	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCTTCCCCAAGGAGTGTGTCT	0.577													12	166					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52551896	52551896	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52551896G>A	uc003dej.2	+	45	4713	c.4639_splice	c.e45-1	p.N1547_splice	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor						cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCCTGACTCAGAACAATGGAG	0.587													6	86					0	0	1	0	0
PBRM1	55193	broad.mit.edu	37	3	52661316	52661316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52661316G>A	uc003des.2	-	13	1526	c.1514C>T	c.(1513-1515)TCT>TTT	p.S505F	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.S505F|PBRM1_uc003der.2_Missense_Mutation_p.S473F|PBRM1_uc003det.2_Missense_Mutation_p.S505F|PBRM1_uc003deu.2_Missense_Mutation_p.S505F|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.S505F|PBRM1_uc010hmk.1_Missense_Mutation_p.S505F|PBRM1_uc003dey.2_Missense_Mutation_p.S505F|PBRM1_uc003dez.1_Missense_Mutation_p.S505F|PBRM1_uc003dfb.1_Missense_Mutation_p.S403F	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	505					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		ACCAGTATCAGAGGTGGCTGA	0.413			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								3	59					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52817097	52817097	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52817097T>C	uc003dfs.2	+	9	1079	c.1055T>C	c.(1054-1056)CTA>CCA	p.L352P	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	352	VWFA.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GAGGCCAACCTACAAGCAGCT	0.562													5	63					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52821064	52821064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52821064G>A	uc003dfs.2	+	14	1861	c.1837G>A	c.(1837-1839)GGC>AGC	p.G613S	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.G214S|ITIH1_uc010hmo.1_Missense_Mutation_p.G167S|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	613	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GAGCATCAGGGGCATGGCGGA	0.612													16	127					0	0	1	0	0
TMEM110	375346	broad.mit.edu	37	3	52878872	52878872	+	Silent	SNP	G	A	A	rs147704393		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52878872G>A	uc003dge.2	-	5	594	c.513C>T	c.(511-513)ATC>ATT	p.I171I	MUSTN1_uc003dgb.3_5'Flank|TMEM110_uc003dgc.3_Silent_p.I171I	NM_198563	NP_940965	Q86TL2	TM110_HUMAN	transmembrane protein 110	171	Helical; (Potential).					integral to membrane				large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.72e-05)|Kidney(197;0.000777)|KIRC - Kidney renal clear cell carcinoma(197;0.000915)|OV - Ovarian serous cystadenocarcinoma(275;0.0541)		TTAGGAGGACGATGAAGACGA	0.537													9	105					0	0	1	0	0
SFMBT1	51460	broad.mit.edu	37	3	52941280	52941280	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:52941280G>A	uc003dgf.2	-	20	2705	c.2136C>T	c.(2134-2136)TCC>TCT	p.S712S	SFMBT1_uc010hmr.2_Silent_p.S659S|SFMBT1_uc003dgg.2_Silent_p.S712S|SFMBT1_uc003dgh.2_Silent_p.S712S	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	712					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		CTTCACTTAGGGAATCATCAT	0.473													8	85					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53845298	53845298	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:53845298G>A	uc003dgv.3	+	48	6514	c.6351G>A	c.(6349-6351)GGG>GGA	p.G2117G	CACNA1D_uc003dgu.3_Silent_p.G2137G|CACNA1D_uc003dgy.3_Silent_p.G2093G|CACNA1D_uc003dgw.3_Silent_p.G1784G|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2117	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GAGCCAACGGGGATGTGGGCC	0.602													5	80					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	55922538	55922538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:55922538C>T	uc003dhr.1	-	14	2699	c.2443G>A	c.(2443-2445)GAA>AAA	p.E815K	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Missense_Mutation_p.E294K	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	815	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCATCCAGTTCCTGTCTGGTC	0.512													12	128					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56026252	56026252	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:56026252C>T	uc003dhr.1	-	11	2344	c.2088G>A	c.(2086-2088)AGG>AGA	p.R696R	ERC2_uc003dht.1_Silent_p.R179R	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	696	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CAGGGTTCATCCTGGAGTCAT	0.433													8	102					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468631	56468631	+	Silent	SNP	G	A	A	rs141688594	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:56468631G>A	uc003dhr.1	-	2	661	c.405C>T	c.(403-405)GTC>GTT	p.V135V		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	135						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ACATGGAGGGGACCTGGTGGT	0.507													15	146					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57132020	57132020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:57132020G>A	uc003dil.2	-	12	1800	c.1711C>T	c.(1711-1713)CCA>TCA	p.P571S	IL17RD_uc003dik.2_Missense_Mutation_p.P547S|IL17RD_uc010hna.2_Missense_Mutation_p.P427S|IL17RD_uc011bex.1_Missense_Mutation_p.P427S	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	571	Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TAGCGCAGTGGAGGAGGATGG	0.517													5	46					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57144329	57144329	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:57144329G>A	uc003dil.2	-	4	410	c.321C>T	c.(319-321)TTC>TTT	p.F107F	IL17RD_uc003dik.2_Silent_p.F83F|IL17RD_uc010hna.2_5'UTR|IL17RD_uc011bex.1_5'UTR	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	107	Extracellular (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		ATCCTTTCAGGAATTCGATGC	0.423													3	12					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58134455	58134455	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:58134455C>T	uc003djj.2	+	36	6132	c.5967C>T	c.(5965-5967)CCC>CCT	p.P1989P	FLNB_uc010hne.2_Silent_p.P2020P|FLNB_uc003djk.2_Silent_p.P1978P|FLNB_uc010hnf.2_Silent_p.P1965P|FLNB_uc003djl.2_Silent_p.P1809P|FLNB_uc003djm.2_Silent_p.P1796P|FLNB_uc010hng.1_5'Flank	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1989	Filamin 18.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCAACAGCCCCGTGTCTATCA	0.572													4	77					0	0	1	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58186759	58186759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:58186759C>T	uc003djo.1	-	5	608	c.511G>A	c.(511-513)GTC>ATC	p.V171I	DNASE1L3_uc011bfd.1_Missense_Mutation_p.V141I|DNASE1L3_uc003djp.1_Missense_Mutation_p.V171I|DNASE1L3_uc003djq.1_Missense_Mutation_p.V171I	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	171					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		TCCGTGTAGACCTCAACCAAC	0.557													22	316					0	0	1	0	0
FEZF2	55079	broad.mit.edu	37	3	62357301	62357301	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:62357301G>A	uc003dlh.2	-	2	1101	c.894C>T	c.(892-894)GTC>GTT	p.V298V	FEZF2_uc003dli.2_Silent_p.V298V	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	298	C2H2-type 1.				transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		CTCCGGTGTGGACCGGCATGT	0.582													12	116					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62518589	62518589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:62518589G>A	uc003dll.2	-	13	2608	c.2248C>T	c.(2248-2250)CAC>TAC	p.H750Y	CADPS_uc003dlk.1_Missense_Mutation_p.H254Y|CADPS_uc003dlm.2_Missense_Mutation_p.H750Y|CADPS_uc003dln.2_Missense_Mutation_p.H733Y	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	750					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AAGCTGTAGTGAAGAAGGGTG	0.532													4	52					0	0	1	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64084807	64084807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:64084807G>A	uc003dmf.2	-	8	3041	c.2455C>T	c.(2455-2457)CCC>TCC	p.P819S		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	819						cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		GAAGATTTGGGGAGGCCGTAG	0.502													7	125					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64619151	64619151	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:64619151G>A	uc003dmg.2	-	14	2204	c.2172C>T	c.(2170-2172)TGC>TGT	p.C724C	ADAMTS9_uc011bfo.1_Silent_p.C696C|ADAMTS9_uc003dmh.1_Silent_p.C553C|ADAMTS9_uc003dmk.1_Silent_p.C724C	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	724	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GACTTACCCGGCAAAGGCCCT	0.488													11	93					0	0	1	0	0
FAM19A1	407738	broad.mit.edu	37	3	68466432	68466432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:68466432G>A	uc003dnd.2	+	3	337	c.121G>A	c.(121-123)GGA>AGA	p.G41R	FAM19A1_uc003dne.2_Missense_Mutation_p.G41R|FAM19A1_uc003dng.2_Missense_Mutation_p.G41R	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	41						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		CTTGCCAGAAGGAGGGACGTG	0.468													4	24					0	0	1	0	0
MIR1324	100302212	broad.mit.edu	37	3	75679915	75679915	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:75679915C>T	hsa-mir-1324|MI0006657	+			c.2C>T																				0						GAGAACATTCCTGAAGAGGTG	0.582													3	69					0	0	1	0	0
HTR1F	3355	broad.mit.edu	37	3	88040497	88040497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:88040497C>T	uc003dqr.2	+	2	756	c.598C>T	c.(598-600)CTT>TTT	p.L200F		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	200	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	GATTTTGATCCTTTACTACAA	0.408													9	64					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89259218	89259218	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:89259218A>G	uc003dqy.2	+	3	587	c.362A>G	c.(361-363)AAC>AGC	p.N121S	EPHA3_uc003dqx.1_Missense_Mutation_p.N121S|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	121	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GAGACATTCAACCTGTACTAC	0.423										TSP Lung(6;0.00050)			13	154					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89259262	89259262	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:89259262C>T	uc003dqy.2	+	3	631	c.406C>T	c.(406-408)CGA>TGA	p.R136*	EPHA3_uc003dqx.1_Nonsense_Mutation_p.R136*|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	136	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GGTGAAATTTCGAGAGCATCA	0.418										TSP Lung(6;0.00050)			18	186					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97439158	97439158	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:97439158A>T	uc010how.1	+	15	2881	c.2838A>T	c.(2836-2838)AAA>AAT	p.K946N	EPHA6_uc003drt.2_Missense_Mutation_p.K338N|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	851	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCTACAGAAAATTCTCCTCAG	0.448													8	99					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983223	97983223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:97983223G>A	uc003dsi.1	+	1	95	c.95G>A	c.(94-96)GGA>GAA	p.G32E		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	32	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						GTTCTCACAGGATTTTTACAT	0.398													16	170					0	0	1	0	0
OR5K4	403278	broad.mit.edu	37	3	98072975	98072975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:98072975C>T	uc011bgv.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AGAATTATTTCCCTGTATGAA	0.433													9	240					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98188459	98188459	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:98188459C>T	uc003dsm.2	+	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						ATGAGTTTATCCTCACAGGAT	0.398													6	66					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513754	99513754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:99513754G>A	uc003dtg.1	+	5	1254	c.1009G>A	c.(1009-1011)GGA>AGA	p.G337R	COL8A1_uc003dth.1_Missense_Mutation_p.G337R|COL8A1_uc003dti.1_Missense_Mutation_p.G338R	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	337	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						AGGGGAGCAAGGACTGCCAGG	0.637													9	39					0	0	1	0	0
TOMM70A	9868	broad.mit.edu	37	3	100084413	100084413	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:100084413A>T	uc003dtw.2	-	12	2254	c.1822T>A	c.(1822-1824)TTA>ATA	p.L608I		NM_014820	NP_055635	O94826	TOM70_HUMAN	translocase of outer mitochondrial membrane 70	608	Cytoplasmic (Potential).				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane translocase complex	protein binding|protein transmembrane transporter activity			ovary(1)	1						CTGTTTTATAATGTTGGTGGT	0.448													20	163					0	0	1	0	0
PCNP	57092	broad.mit.edu	37	3	101311501	101311501	+	Silent	SNP	C	T	T	rs17851951		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:101311501C>T	uc003dva.2	+	5	459	c.441C>T	c.(439-441)TCC>TCT	p.S147S	PCNP_uc003dvb.2_RNA|PCNP_uc003dvc.2_RNA|PCNP_uc003dvd.2_Missense_Mutation_p.L129F	NM_020357	NP_065090	Q8WW12	PCNP_HUMAN	PEST proteolytic signal containing nuclear	147					cell cycle|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	nucleus	protein binding				0						GACCAAACTCCTTCAATAAAG	0.333													4	82					0	0	1	0	0
RPL24	6152	broad.mit.edu	37	3	101399994	101399994	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:101399994A>T	uc003dvh.1	-	6	502	c.459T>A	c.(457-459)GTT>GTA	p.V153V	RPL24_uc003dvi.1_3'UTR	NM_000986	NP_000977	P83731	RL24_HUMAN	ribosomal protein L24	153					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						GTTTTCCACCAACTCGGGGAG	0.368													11	164					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101476690	101476690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:101476690C>T	uc003dvk.1	+	9	1267	c.1240C>T	c.(1240-1242)CCA>TCA	p.P414S	CEP97_uc010hpm.1_Missense_Mutation_p.P380S|CEP97_uc011bhf.1_Missense_Mutation_p.P355S|CEP97_uc003dvl.1_Missense_Mutation_p.P110S|CEP97_uc003dvm.1_Missense_Mutation_p.P252S	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	414	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						AGGACTGTCTCCACTATCACC	0.473													4	77					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102175157	102175157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:102175157C>T	uc003dvs.1	+	11	1330	c.448C>T	c.(448-450)CTT>TTT	p.L150F	ZPLD1_uc003dvt.1_Missense_Mutation_p.L166F|ZPLD1_uc011bhg.1_Missense_Mutation_p.L150F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	150	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ACCTGGGCTTCTTTACAAATT	0.368													18	211					0	0	1	0	0
CBLB	868	broad.mit.edu	37	3	105378019	105378019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:105378019G>A	uc003dwc.2	-	19	3066	c.2744C>T	c.(2743-2745)CCA>CTA	p.P915L	CBLB_uc003dwa.2_Missense_Mutation_p.P130L|CBLB_uc011bhi.1_Missense_Mutation_p.P893L	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	915	Pro-rich.|Interaction with SH3KBP1.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GTGAATTTCTGGTGCAGTCCT	0.458			Mis S		AML								4	59					0	0	1	0	0
CBLB	868	broad.mit.edu	37	3	105397281	105397281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:105397281G>A	uc003dwc.2	-	17	2885	c.2563C>T	c.(2563-2565)CCT>TCT	p.P855S	CBLB_uc003dwa.2_Missense_Mutation_p.P70S|CBLB_uc011bhi.1_Missense_Mutation_p.P833S	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	855	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						CTACCTGAAGGAAGAAGAAAA	0.423			Mis S		AML								8	46					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108072559	108072559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108072559G>A	uc003dwy.3	+	4	517	c.350G>A	c.(349-351)GGA>GAA	p.G117E	HHLA2_uc011bhl.1_Missense_Mutation_p.G53E|HHLA2_uc010hpu.2_Missense_Mutation_p.G117E|HHLA2_uc003dwz.2_Missense_Mutation_p.G117E	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	117	Ig-like V-type 1.					integral to membrane				ovary(1)	1						CTGGACGAAGGAATTTACACC	0.403													3	28					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108074105	108074105	+	Missense_Mutation	SNP	G	A	A	rs137976918	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108074105G>A	uc003dwy.3	+	5	729	c.562G>A	c.(562-564)GGG>AGG	p.G188R	HHLA2_uc011bhl.1_Missense_Mutation_p.G124R|HHLA2_uc010hpu.2_Missense_Mutation_p.G188R|HHLA2_uc003dwz.2_Missense_Mutation_p.G188R	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	188	Ig-like C1-type.					integral to membrane				ovary(1)	1						GGAAGAAACAGGGTCTTTGGA	0.363													5	23					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108139934	108139934	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108139934C>T	uc003dxa.1	-	29	3946	c.3889_splice	c.e29+1	p.G1297_splice		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15							myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TACTTACTTACCACTCTCACT	0.468													9	122					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108179190	108179190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108179190C>T	uc003dxa.1	-	18	2006	c.1949G>A	c.(1948-1950)CGA>CAA	p.R650Q		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	650	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCCTTTCTTTCGTTTCTTCTC	0.274													3	14					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108224574	108224574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108224574C>T	uc003dxa.1	-	3	308	c.251G>A	c.(250-252)GGA>GAA	p.G84E		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	84	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTTTACCTCTCCATCTGCTGT	0.323													5	109					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108474710	108474710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108474710G>A	uc003dxh.2	-	3	349	c.251C>T	c.(250-252)TCG>TTG	p.S84L		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	84					cell proliferation	extracellular region	hormone activity			skin(1)	1						AACATCCCACGAACCACAGCC	0.577													11	135					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108776323	108776323	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:108776323T>C	uc003dxl.2	-	13	1129	c.1042A>G	c.(1042-1044)ACA>GCA	p.T348A	MORC1_uc011bhn.1_Missense_Mutation_p.T348A	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	348	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GTTCTTGCTGTTTTTAATTCT	0.313													8	39					0	0	1	0	0
ZBED2	79413	broad.mit.edu	37	3	111312580	111312580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:111312580C>T	uc003dxy.2	-	2	1354	c.469G>A	c.(469-471)GAA>AAA	p.E157K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	157							DNA binding|metal ion binding			skin(1)	1						ACCTCCTTTTCCCTTTGGCTG	0.627													19	134					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111604089	111604089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:111604089G>A	uc010hqa.2	+	2	1576	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E416K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E389K|PHLDB2_uc003dye.3_Missense_Mutation_p.E389K|PHLDB2_uc003dyf.3_Missense_Mutation_p.E389K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	389						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGGATCTGTGGAATTTGATGA	0.512													6	42					0	0	1	0	0
GCET2	257144	broad.mit.edu	37	3	111845880	111845880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:111845880C>T	uc003dys.1	-	4	294	c.144G>A	c.(142-144)TGG>TGA	p.W48*	C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron|GCET2_uc003dyt.1_5'UTR	NM_152785	NP_689998	Q8N6F7	GCET2_HUMAN	germinal center expressed transcript 2 isoform	48						mitochondrion					0						GTATTTTTTTCCTGTAAAAGA	0.284													3	26					0	0	1	0	0
GCET2	257144	broad.mit.edu	37	3	111851963	111851963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:111851963C>T	uc003dys.1	-	1	155	c.5G>A	c.(4-6)GGA>GAA	p.G2E	GCET2_uc003dyt.1_5'UTR	NM_152785	NP_689998	Q8N6F7	GCET2_HUMAN	germinal center expressed transcript 2 isoform	2						mitochondrion					0						CAGAGAATTTCCCATCCTCTC	0.502													12	131					0	0	1	0	0
CD200R1L	344807	broad.mit.edu	37	3	112546417	112546417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:112546417G>A	uc003dzi.1	-	3	453	c.227C>T	c.(226-228)TCC>TTC	p.S76F	CD200R1L_uc011bhw.1_Missense_Mutation_p.S55F|CD200R1L_uc010hqf.1_Missense_Mutation_p.S55F	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	76	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						TTTTGTGCAGGAAGGCTGGCC	0.418													8	70					0	0	1	0	0
WDR52	55779	broad.mit.edu	37	3	113114708	113114708	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:113114708C>T	uc003eae.1	-	15	1826	c.1780_splice	c.e15-1	p.S594_splice		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2											central_nervous_system(1)	1						GATCTTTACTCTAAGGAAAAA	0.343													3	32					0	0	1	0	0
WDR52	55779	broad.mit.edu	37	3	113146154	113146154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:113146154C>T	uc003eae.1	-	3	179	c.133G>A	c.(133-135)GAT>AAT	p.D45N		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	45										central_nervous_system(1)	1						TCTGTGTCATCTTCTAAAAAT	0.299													3	28					0	0	1	0	0
KIAA1407	57577	broad.mit.edu	37	3	113765467	113765467	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:113765467A>G	uc003eax.2	-	3	389	c.242T>C	c.(241-243)ATA>ACA	p.I81T	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Intron|KIAA1407_uc011bip.1_Missense_Mutation_p.I68T	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	81										ovary(2)	2						ATGATCCTCTATTTGCTCAGA	0.373													6	56					0	0	1	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069779	114069779	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:114069779G>A	uc003ebi.2	-	4	1326	c.1146C>T	c.(1144-1146)TCC>TCT	p.S382S	ZBTB20_uc003ebj.2_Silent_p.S309S|ZBTB20_uc010hqp.2_Silent_p.S309S|ZBTB20_uc003ebk.2_Silent_p.S309S|ZBTB20_uc003ebl.2_Silent_p.S309S|ZBTB20_uc003ebm.2_Silent_p.S309S|ZBTB20_uc003ebn.2_Silent_p.S309S|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	382					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CGGTGCCTATGGAGGAGCTGA	0.652													5	53					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119900153	119900153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:119900153G>A	uc011bjf.1	-	7	752	c.752C>T	c.(751-753)TCC>TTC	p.S251F	GPR156_uc011bjg.1_Missense_Mutation_p.S247F	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	251	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		CACAGGAGGGGAGCTGACATG	0.562													5	81					0	0	1	0	0
LRRC58	116064	broad.mit.edu	37	3	120053861	120053861	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:120053861A>G	uc003edr.2	-	3	851	c.755T>C	c.(754-756)GTT>GCT	p.V252A		NM_001099678	NP_001093148	Q96CX6	LRC58_HUMAN	leucine rich repeat containing 58	252	LRR 9.										0				GBM - Glioblastoma multiforme(114;0.147)		TAAATCTCTAACAAAACGAAC	0.398													3	25					0	0	1	0	0
RABL3	285282	broad.mit.edu	37	3	120449598	120449598	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:120449598T>C	uc003edx.2	-	2	113	c.83A>G	c.(82-84)CAA>CGA	p.Q28R		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	28	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		CACTTGATTTTGGCATAGGAG	0.383													8	83					0	0	1	0	0
RABL3	285282	broad.mit.edu	37	3	120461386	120461386	+	Splice_Site	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:120461386T>C	uc003edx.2	-	1	1	c.-29_splice	c.e1-1		GTF2E1_uc003edy.2_5'Flank|GTF2E1_uc003edz.3_5'Flank	NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3						small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		TTAACGCCTGTTCCTGGATTG	0.547													5	37					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120973939	120973939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:120973939G>A	uc003eec.3	+	16	1779	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	STXBP5L_uc011bji.1_Missense_Mutation_p.E547K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	547	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CAGCAGACATGAAATTACAAC	0.308													3	38					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120976071	120976071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:120976071C>T	uc003eec.3	+	17	1863	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	STXBP5L_uc011bji.1_Missense_Mutation_p.P575S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	575	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGAAACAAGTCCTCCGTTTCC	0.388													12	115					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100282	121100282	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121100282C>T	uc003eec.3	+	23	2702	c.2562C>T	c.(2560-2562)TTC>TTT	p.F854F	STXBP5L_uc011bji.1_Silent_p.F830F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	854	WD 11.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CTTGTCTGTTCGTTGGAACCA	0.413													16	169					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121209031	121209031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121209031G>A	uc003eee.3	-	16	2876	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	POLQ_uc003eed.2_Missense_Mutation_p.S88F	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	916					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CTTTACTTCGGACTCACTATG	0.348								DNA_polymerases_(catalytic_subunits)					19	88					0	0	1	0	0
ARGFX	503582	broad.mit.edu	37	3	121305151	121305151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121305151C>T	uc003eef.2	+	5	747	c.652C>T	c.(652-654)CCT>TCT	p.P218S		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	218						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GGCCTCGGTTCCTGCTTTGTA	0.453													12	99					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121613330	121613330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121613330C>T	uc003eep.2	+	1	160	c.7C>T	c.(7-9)CCT>TCT	p.P3S	SLC15A2_uc011bjn.1_Missense_Mutation_p.P3S	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	3					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	AGCCATGAATCCTTTCCAGAA	0.493													9	94					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121615313	121615313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121615313G>A	uc003eep.2	+	2	319	c.166G>A	c.(166-168)GAG>AAG	p.E56K	SLC15A2_uc011bjn.1_Missense_Mutation_p.E56K	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	56					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGAATTCTGCGAGCGCTTTTC	0.453													8	100					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980768	121980768	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:121980768A>C	uc003eev.3	+	4	1258	c.886A>C	c.(886-888)AGC>CGC	p.S296R	CASR_uc003eew.3_Missense_Mutation_p.S296R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	296	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTGGCTGGCCAGCGAGGCCTG	0.602													6	80					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002610	122002610	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:122002610C>T	uc003eev.3	+	7	2181	c.1809C>T	c.(1807-1809)ATC>ATT	p.I603I	CASR_uc003eew.3_Silent_p.I613I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	603	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCAAGGAGATCGAGTTTCTGT	0.517													6	78					0	0	1	0	0
WDR5B	54554	broad.mit.edu	37	3	122134328	122134328	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:122134328G>A	uc003efa.1	-	1	555	c.48C>T	c.(46-48)TCC>TCT	p.S16S		NM_019069	NP_061942	Q86VZ2	WDR5B_HUMAN	WD repeat domain 5B	16										ovary(3)	3				GBM - Glioblastoma multiforme(114;0.0704)		TGGCCGATGAGGAGAGGGCCA	0.507													12	140					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122646767	122646767	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:122646767G>A	uc003efz.1	-	8	1024	c.720C>T	c.(718-720)GTC>GTT	p.V240V	SEMA5B_uc011bju.1_Silent_p.V182V|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.V240V|SEMA5B_uc010hro.1_Silent_p.V182V|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	240	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GGGAGGAGATGACAGCTGTGG	0.627													6	96					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123419581	123419581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:123419581C>T	uc003ego.2	-	18	3016	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	MYLK_uc011bjw.1_Missense_Mutation_p.E912K|MYLK_uc003egp.2_Missense_Mutation_p.E843K|MYLK_uc003egq.2_Missense_Mutation_p.E912K|MYLK_uc003egr.2_Missense_Mutation_p.E843K|MYLK_uc003egs.2_Missense_Mutation_p.E736K|MYLK_uc003egt.2_Missense_Mutation_p.E103K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	912	1-2.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGGTCGTCTTCCGATAGGGTC	0.582													12	71					0	0	1	0	0
ROPN1	54763	broad.mit.edu	37	3	123699272	123699272	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:123699272C>T	uc003eha.2	-	3	398	c.57G>A	c.(55-57)AAG>AAA	p.K19K	ROPN1_uc003ehb.1_RNA|ROPN1_uc003ehc.1_RNA	NM_017578	NP_060048	Q9HAT0	ROP1A_HUMAN	ropporin	19	RIIa.				signal transduction		cAMP-dependent protein kinase regulator activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.148)		TGGCAAACTCCTTCAGCATCT	0.552													19	118					0	0	1	0	0
ITGB5	3693	broad.mit.edu	37	3	124567376	124567376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:124567376G>A	uc003eho.2	-	4	688	c.391C>T	c.(391-393)CGC>TGC	p.R131C		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	131	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TCCACCTGGCGAACCTGTAGC	0.552													10	68					0	0	1	0	0
MUC13	56667	broad.mit.edu	37	3	124632455	124632455	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:124632455G>C	uc003ehq.1	-	7	1059	c.1035C>G	c.(1033-1035)TGC>TGG	p.C345W		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	345	EGF-like 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						GGTCAGATTTGCAATCGCATG	0.423													14	92					0	0	1	0	0
CHST13	166012	broad.mit.edu	37	3	126255181	126255181	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:126255181C>T	uc003eja.2	+	2	165	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	55	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		TGCAGAAGCTCTATGACCTGG	0.602													4	83					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126382316	126382316	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:126382316G>A	uc003eje.1	+	2	283	c.39G>A	c.(37-39)GTG>GTA	p.V13V						RecName: Full=Putative uncharacterized protein C3orf46;																		TGCAGGTGGTGGATGCAGAGA	0.557													13	117					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126751236	126751236	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:126751236C>T	uc003ejg.2	+	29	5173	c.5169C>T	c.(5167-5169)CCC>CCT	p.P1723P	PLXNA1_uc003ejh.2_Silent_p.P391P	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1746	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GCAGCCTGCCCCTGCGCTTCT	0.602													10	97					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127318180	127318180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:127318180C>T	uc003ejp.2	+	2	83	c.26C>T	c.(25-27)ACC>ATC	p.T9I	MCM2_uc011bkm.1_5'UTR|MCM2_uc010hsl.2_RNA	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	9	Interaction with MYST2 (By similarity).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GAATCCTTCACCATGGCATCC	0.587													38	389					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127646784	127646784	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:127646784G>A	uc010hsr.2	+	2	1251	c.1248G>A	c.(1246-1248)TGG>TGA	p.W416*	KBTBD12_uc003ejy.3_Nonsense_Mutation_p.W23*|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Nonsense_Mutation_p.W416*	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	416	Kelch 1.									ovary(1)	1						GGGACAATTGGAAAAGGGTGT	0.383													5	50					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127682071	127682071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:127682071G>A	uc010hsr.2	+	4	1535	c.1532G>A	c.(1531-1533)CGA>CAA	p.R511Q	KBTBD12_uc003ejy.3_Missense_Mutation_p.R118Q|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Missense_Mutation_p.R86Q	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	511	Kelch 3.									ovary(1)	1						GGCCAGGTTCGAAAATGCCTT	0.527													5	22					0	0	1	0	0
RUVBL1	8607	broad.mit.edu	37	3	127823693	127823693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:127823693G>A	uc003ekh.2	-	4	540	c.436C>T	c.(436-438)CCC>TCC	p.P146S	RUVBL1_uc003ekf.2_Missense_Mutation_p.P86S|RUVBL1_uc010hss.2_Missense_Mutation_p.P146S	NM_003707	NP_003698	Q9Y265	RUVB1_HUMAN	RuvB-like 1	146					cell division|CenH3-containing nucleosome assembly at centromere|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|mitosis|regulation of growth|regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription, DNA-dependent	Golgi apparatus|Ino80 complex|membrane|microtubule organizing center|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|DNA helicase activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.181)		CCTCCCATGGGATTCTCTGTC	0.348													14	110					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133666116	133666116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:133666116C>T	uc003eqa.3	-	9	1553	c.1279G>A	c.(1279-1281)GAA>AAA	p.E427K	SLCO2A1_uc003eqb.3_Missense_Mutation_p.E351K|SLCO2A1_uc011blv.1_Missense_Mutation_p.E246K	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	427	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GGGTAGACTTCGGCCACAGTT	0.498													9	59					0	0	1	0	0
STAG1	10274	broad.mit.edu	37	3	136196179	136196179	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:136196179G>A	uc003era.1	-	10	1270	c.978C>T	c.(976-978)TTC>TTT	p.F326F	STAG1_uc003erb.1_Silent_p.F326F|STAG1_uc003erc.1_Silent_p.F100F|STAG1_uc010hua.1_Silent_p.F189F	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	326	SCD.				cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TGTCATTTAGGAAGGCATCAC	0.358													6	77					0	0	1	0	0
SOX14	8403	broad.mit.edu	37	3	137483759	137483759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:137483759G>A	uc003erm.1	+	1	181	c.133G>A	c.(133-135)GAA>AAA	p.E45K		NM_004189	NP_004180	O95416	SOX14_HUMAN	SRY-box 14	45	HMG box.				negative regulation of transcription from RNA polymerase II promoter|nervous system development|transcription, DNA-dependent	nucleus	sequence-specific DNA binding				0						CCTAGGTGCCGAATGGAAGCT	0.587													9	38					0	0	1	0	0
ESYT3	83850	broad.mit.edu	37	3	138183326	138183326	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:138183326A>G	uc003esk.2	+	9	1281	c.1055A>G	c.(1054-1056)AAC>AGC	p.N352S	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	352	C2 1.					integral to membrane|plasma membrane					0						ATCTACAGGAACCTGAACCCC	0.562													6	81					0	0	1	0	0
ESYT3	83850	broad.mit.edu	37	3	138189866	138189866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:138189866C>T	uc003esk.2	+	17	1964	c.1738C>T	c.(1738-1740)CGG>TGG	p.R580W	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	580						integral to membrane|plasma membrane					0						GCTGGTGCTTCGGGTAAATCT	0.597													7	85					0	0	1	0	0
RBP1	5947	broad.mit.edu	37	3	139236477	139236477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:139236477C>T	uc003eti.2	-	4	697	c.586G>A	c.(586-588)GTG>ATG	p.V196M		NM_002899	NP_002890	P09455	RET1_HUMAN	retinol binding protein 1, cellular isoform a	134						cytoplasm	retinal binding|retinol binding|transporter activity				0					Vitamin A(DB00162)	CCTCACTGCACCTTCTTGAAT	0.522													22	181					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140401429	140401429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:140401429C>T	uc003eto.1	+	2	658	c.467C>T	c.(466-468)TCA>TTA	p.S156L		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	156	RING-type.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CGCCTGCACTCATTCATGCTG	0.577													10	130					0	0	1	0	0
RASA2	5922	broad.mit.edu	37	3	141290290	141290290	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:141290290C>T	uc003etz.1	+	11	1063	c.1063C>T	c.(1063-1065)CGA>TGA	p.R355*	RASA2_uc010huq.1_Nonsense_Mutation_p.R355*|RASA2_uc003eua.1_Nonsense_Mutation_p.R355*|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	355					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TGAAATATGTCGAGATAAAAA	0.398													22	216					0	0	1	0	0
XRN1	54464	broad.mit.edu	37	3	142031486	142031486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:142031486G>A	uc003eus.2	-	41	4839	c.4772C>T	c.(4771-4773)GCT>GTT	p.A1591V	XRN1_uc010huu.2_Missense_Mutation_p.A1045V|XRN1_uc003eut.2_Missense_Mutation_p.A1578V|XRN1_uc003euu.2_Missense_Mutation_p.A1579V	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1591					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TATTCCCCCAGCCATGGGCAT	0.428													7	60					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142281277	142281277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:142281277C>T	uc003eux.3	-	4	1089	c.967G>A	c.(967-969)GAA>AAA	p.E323K		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	323					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CAGAGTTTTTCCAGCAGCATA	0.368								Other_conserved_DNA_damage_response_genes					11	102					0	0	1	0	0
TRPC1	7220	broad.mit.edu	37	3	142509896	142509896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:142509896G>A	uc003evc.2	+	8	1469	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	TRPC1_uc003evb.2_Missense_Mutation_p.E411K|TRPC1_uc011bni.1_Missense_Mutation_p.E12K	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	445	Cytoplasmic (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						ACTCTGGTATGAAGGGTTGGA	0.328													4	31					0	0	1	0	0
CHST2	9435	broad.mit.edu	37	3	142841169	142841169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:142841169C>T	uc003evm.2	+	2	2400	c.1511C>T	c.(1510-1512)GCC>GTC	p.A504V		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	504	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						CAGCCCATGGCCGTCCTGGGC	0.607													5	75					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143567110	143567110	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:143567110G>A	uc003evn.2	-	1	237	c.55C>T	c.(55-57)CAG>TAG	p.Q19*	SLC9A9_uc011bnk.1_5'UTR	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	19					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						ACCGCTCCCTGATGTTGAAAC	0.408													6	68					0	0	1	0	0
GPR171	29909	broad.mit.edu	37	3	150916441	150916441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:150916441G>A	uc003eyq.3	-	3	973	c.733C>T	c.(733-735)CCG>TCG	p.P245S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	245	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGGTATACGGGATTCGGACA	0.438													11	95					0	0	1	0	0
TMEM14E	645843	broad.mit.edu	37	3	152058325	152058325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:152058325C>T	uc010hvo.2	-	1	455	c.369G>A	c.(367-369)ATG>ATA	p.M123I	MBNL1_uc003ezh.2_Intron|MBNL1_uc003ezi.2_Intron|MBNL1_uc003ezj.2_Intron|MBNL1_uc003ezm.2_Intron|MBNL1_uc003ezl.2_Intron|MBNL1_uc003ezp.2_Intron|MBNL1_uc003ezn.2_Intron|MBNL1_uc003ezo.2_Intron	NM_001123228	NP_001116700	Q6UXP3	TM14E_HUMAN	transmembrane protein 14E	123						integral to membrane					0						TTTAATTCTTCATGAGTCCAA	0.343													5	83					0	0	1	0	0
SGEF	26084	broad.mit.edu	37	3	153943785	153943785	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:153943785C>T	uc011bog.1	+	11	2287	c.2076C>T	c.(2074-2076)ATC>ATT	p.I692I	SGEF_uc011boh.1_Silent_p.I692I|SGEF_uc011boi.1_5'UTR	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	692	PH.				regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGCTCATTATCACCAAGAAGA	0.393													3	30					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154055817	154055817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:154055817C>T	uc003faa.2	-	4	1967	c.1867G>A	c.(1867-1869)GAA>AAA	p.E623K		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	623	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TCACAAATTTCAAGAACCTCC	0.428													6	55					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155199981	155199981	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:155199981T>A	uc011bok.1	-	23	4135	c.3858A>T	c.(3856-3858)AAA>AAT	p.K1286N	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.K1248N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1286					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CATCATCTGGTTTGGTTTTAG	0.478													9	203					0	0	1	0	0
RSRC1	51319	broad.mit.edu	37	3	157920883	157920883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:157920883C>T	uc003fbt.2	+	4	454	c.343C>T	c.(343-345)CGT>TGT	p.R115C	RSRC1_uc011bou.1_Intron|RSRC1_uc003fbu.1_Missense_Mutation_p.R115C|RSRC1_uc003fbv.2_Intron	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	115	Arg/Ser-rich.				nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			ACCTCGTCTCCGTTCTCATAG	0.383													4	26					0	0	1	0	0
GFM1	85476	broad.mit.edu	37	3	158371243	158371243	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:158371243C>A	uc003fce.2	+	7	1092	c.985C>A	c.(985-987)CTC>ATC	p.L329I	GFM1_uc003fcd.2_Missense_Mutation_p.L329I|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Missense_Mutation_p.L260I	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	329					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			CTATGCTATTCTCAATAAAGA	0.343													6	42					2.0095e-06	2.02705e-06	1	1	0
IL12A	3592	broad.mit.edu	37	3	159707982	159707982	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:159707982C>T	uc003fcx.2	+	2	362	c.147C>T	c.(145-147)CTC>CTT	p.L49L	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	15					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CCCTGGTCCTCCTGGACCACC	0.612													8	75					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161216977	161216977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:161216977G>A	uc011bpb.1	+	2	383	c.383G>A	c.(382-384)GGA>GAA	p.G128E		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	128	Collagen-like 1.					collagen					0						GGAGAGGCTGGAAATTTGGGG	0.393													3	10					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164704957	164704957	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:164704957A>G	uc003fei.2	-	45	5228	c.5166T>C	c.(5164-5166)GGT>GGC	p.G1722G		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1722	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AAAACAGAGAACCCTGTGCCA	0.333										HNSCC(35;0.089)			5	90					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164776837	164776837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:164776837C>T	uc003fei.2	-	12	1374	c.1312G>A	c.(1312-1314)GGA>AGA	p.G438R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	438	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATGTTGTTCCATTGGCACGT	0.358										HNSCC(35;0.089)			3	26					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164777087	164777087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:164777087C>T	uc003fei.2	-	11	1209	c.1147G>A	c.(1147-1149)GAT>AAT	p.D383N		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	383	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACCTGTGTATCCTGAAAGTTA	0.348										HNSCC(35;0.089)			3	40					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906683	164906683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:164906683G>A	uc003fej.3	-	2	2380	c.1936C>T	c.(1936-1938)CCT>TCT	p.P646S	SLITRK3_uc003fek.2_Missense_Mutation_p.P646S	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	646	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCCCCAGGAGGAGAAAACTCA	0.532										HNSCC(40;0.11)			4	37					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167319987	167319987	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:167319987G>A	uc003fev.1	-	3	486	c.180C>T	c.(178-180)GGC>GGT	p.G60G	WDR49_uc011bpd.1_Silent_p.G113G|WDR49_uc003few.1_Silent_p.G401G	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	60	WD 2.									large_intestine(1)|ovary(1)|skin(1)	3						TGGCTGAGTGGCCCCAAAGGA	0.373													8	49					0	0	1	0	0
LRRC31	79782	broad.mit.edu	37	3	169558057	169558057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:169558057C>T	uc003fgc.1	-	9	1449	c.1372G>A	c.(1372-1374)GAC>AAC	p.D458N	LRRC31_uc010hwp.1_Missense_Mutation_p.D402N	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	458	LRR 9.									ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			TAGCTCAGGTCCAGCTTTTGC	0.483													3	49					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169637340	169637340	+	Silent	SNP	C	T	T	rs151002058		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:169637340C>T	uc003fgd.2	+	3	321	c.54C>T	c.(52-54)ATC>ATT	p.I18I	SAMD7_uc003fge.2_Silent_p.I18I|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	18										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TCCCACTGATCCCCTCACCAT	0.428													10	134					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644815	169644815	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:169644815C>T	uc003fgd.2	+	6	1032	c.765C>T	c.(763-765)CTC>CTT	p.L255L	SAMD7_uc003fge.2_Silent_p.L255L|SAMD7_uc011bpo.1_Silent_p.L156L	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	255										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GTGGAGAGCTCGAGCCCACCC	0.517													6	83					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644954	169644954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:169644954C>T	uc003fgd.2	+	6	1171	c.904C>T	c.(904-906)CGA>TGA	p.R302*	SAMD7_uc003fge.2_Nonsense_Mutation_p.R302*|SAMD7_uc011bpo.1_Nonsense_Mutation_p.R203*	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	302										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TCCAGTTCCTCGACCATCTCT	0.502													10	101					0	0	1	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198229	170198229	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:170198229C>T	uc003fgz.2	-	7	2158	c.1842G>A	c.(1840-1842)GTG>GTA	p.V614V	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	614	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			GCTGCAGGATCACAAACACCA	0.542													6	88					0	0	1	0	0
FNDC3B	64778	broad.mit.edu	37	3	172013287	172013287	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:172013287A>G	uc003fhy.2	+	8	1156	c.984A>G	c.(982-984)AAA>AAG	p.K328K	FNDC3B_uc003fhz.3_Silent_p.K328K|FNDC3B_uc003fia.2_Silent_p.K259K	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	328	Fibronectin type-III 1.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GAGATGGAAAATACAAGATAA	0.428													11	78					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178942523	178942523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:178942523G>A	uc003fjk.2	+	16	2487	c.2330G>A	c.(2329-2331)AGG>AAG	p.R777K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	777					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCTGCAAAAAGGCCACTGTGG	0.348		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			6	57					0	0	1	0	0
GNB4	59345	broad.mit.edu	37	3	179137190	179137190	+	Missense_Mutation	SNP	G	A	A	rs35612039		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:179137190G>A	uc003fjv.3	-	4	480	c.200C>T	c.(199-201)TCC>TTC	p.S67F	GNB4_uc003fju.3_5'Flank	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	67	WD 1.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			TACAAACCTGGAATCGTATCC	0.363													15	104					0	0	1	0	0
NDUFB5	4711	broad.mit.edu	37	3	179341758	179341758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:179341758C>T	uc003fkc.2	+	6	529	c.500C>T	c.(499-501)CCC>CTC	p.P167L	NDUFB5_uc003fkd.2_RNA|NDUFB5_uc003fke.2_Missense_Mutation_p.P115L	NM_002492	NP_002483	O43674	NDUB5_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	167					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			skin(1)	1	all_cancers(143;9.62e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.18)		NADH(DB00157)	GGAGATGGACCCTGGTATTAC	0.368													9	121					0	0	1	0	0
USP13	8975	broad.mit.edu	37	3	179460024	179460024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:179460024C>T	uc003fkh.2	+	12	1501	c.1420C>T	c.(1420-1422)CGT>TGT	p.R474C	USP13_uc003fkf.2_Missense_Mutation_p.R474C	NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	474					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			CGATGTTTTTCGTTTTTTGGT	0.473													8	62					0	0	1	0	0
DCUN1D1	54165	broad.mit.edu	37	3	182662918	182662918	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:182662918G>A	uc003fld.1	-	7	793	c.744C>T	c.(742-744)CGC>CGT	p.R248R	DCUN1D1_uc011bqn.1_Silent_p.R105R	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	248	DCUN1.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			CAATTTGAGGGCGTGCAAATT	0.373													4	50					0	0	1	0	0
ABCC5	10057	broad.mit.edu	37	3	183707070	183707070	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:183707070G>A	uc003fmg.2	-	3	396	c.231C>T	c.(229-231)CCC>CCT	p.P77P	ABCC5_uc011bqt.1_5'UTR|ABCC5_uc010hxl.2_Silent_p.P77P|ABCC5_uc003fmh.2_Silent_p.P77P|ABCC5_uc010hxm.2_RNA|ABCC5_uc010hxn.2_Silent_p.P77P|ABCC5_uc010hxo.2_Silent_p.P77P	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	77						integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACTTTCCCTTGGGATGCTCCT	0.532													7	54					0	0	1	0	0
HTR3E	285242	broad.mit.edu	37	3	183823664	183823664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:183823664C>T	uc010hxq.2	+	7	1298	c.832C>T	c.(832-834)CGT>TGT	p.R278C	HTR3E_uc003fml.3_Missense_Mutation_p.R263C|HTR3E_uc003fmm.2_Missense_Mutation_p.R293C|HTR3E_uc010hxr.2_Missense_Mutation_p.R304C|HTR3E_uc003fmn.2_Missense_Mutation_p.R278C	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	278	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			AAGTGGGAATCGTGTCCCATT	0.557													20	166					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184033942	184033942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:184033942C>T	uc003fnp.2	+	4	281	c.83C>T	c.(82-84)ACA>ATA	p.T28I	EIF4G1_uc003fno.1_Missense_Mutation_p.T28I|EIF4G1_uc010hxw.1_5'UTR|EIF4G1_uc003fnt.2_Intron|EIF4G1_uc003fnq.2_Intron|EIF4G1_uc003fnr.2_Intron|EIF4G1_uc010hxx.2_Missense_Mutation_p.T28I|EIF4G1_uc003fns.2_5'UTR|EIF4G1_uc010hxy.2_Missense_Mutation_p.T28I|EIF4G1_uc010hxz.1_Intron|EIF4G1_uc003fnv.3_Missense_Mutation_p.T28I|EIF4G1_uc003fnu.3_Missense_Mutation_p.T28I|EIF4G1_uc003fnw.2_Missense_Mutation_p.T28I	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	28					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCGGGGCAGACAGCGCCGGTG	0.632													4	76					0	0	1	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185404970	185404970	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:185404970G>A	uc003fpo.2	-	7	766	c.687C>T	c.(685-687)ATC>ATT	p.I229I	IGF2BP2_uc010hyi.2_Silent_p.I172I|IGF2BP2_uc010hyj.2_Silent_p.I166I|IGF2BP2_uc010hyk.2_Silent_p.I93I|IGF2BP2_uc010hyl.2_Silent_p.I166I|IGF2BP2_uc003fpp.2_Silent_p.I229I|IGF2BP2_uc003fpq.2_Silent_p.I234I	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	229	KH 1.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			CTTTTCTATGGATATCTACCC	0.493													5	58					0	0	1	0	0
AHSG	197	broad.mit.edu	37	3	186338483	186338483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:186338483C>T	uc003fqk.3	+	7	949	c.868C>T	c.(868-870)CCA>TCA	p.P290S	AHSG_uc003fql.3_Missense_Mutation_p.P291S|AHSG_uc003fqm.3_Missense_Mutation_p.P289S|AHSG_uc010hyp.2_Missense_Mutation_p.P253S	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	290					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		TGGACTCCCTCCAGCTGGCTC	0.637													25	257					0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186394974	186394974	+	Missense_Mutation	SNP	G	A	A	rs140336956	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:186394974G>A	uc003fqq.2	+	7	903	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	294	Pro-rich.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CAAGCCACACGAACATGGACC	0.547													4	74					0	0	1	0	0
MASP1	5648	broad.mit.edu	37	3	186947657	186947657	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:186947657C>T	uc003frh.1	-	11	1664	c.1332G>A	c.(1330-1332)AAG>AAA	p.K444K		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	444					complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		TGGCCATCAGCTTCCGGGAGA	0.607													4	69					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189585687	189585687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:189585687G>A	uc003fry.2	+	7	1037	c.948G>A	c.(946-948)ATG>ATA	p.M316I	TP63_uc003frx.2_Missense_Mutation_p.M316I|TP63_uc003frz.2_Missense_Mutation_p.M316I|TP63_uc010hzc.1_Missense_Mutation_p.M316I|TP63_uc003fsa.2_Missense_Mutation_p.M222I|TP63_uc003fsb.2_Missense_Mutation_p.M222I|TP63_uc003fsc.2_Missense_Mutation_p.M222I|TP63_uc003fsd.2_Missense_Mutation_p.M222I|TP63_uc010hzd.1_Missense_Mutation_p.M137I|TP63_uc003fse.1_Missense_Mutation_p.M197I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	316					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TTGGAGGGATGAACCGCCGTC	0.403									Hay-Wells_syndrome	HNSCC(45;0.13)			4	54					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189586422	189586422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:189586422G>A	uc003fry.2	+	8	1135	c.1046G>A	c.(1045-1047)GGA>GAA	p.G349E	TP63_uc003frx.2_Missense_Mutation_p.G349E|TP63_uc003frz.2_Missense_Mutation_p.G349E|TP63_uc010hzc.1_Missense_Mutation_p.G349E|TP63_uc003fsa.2_Missense_Mutation_p.G255E|TP63_uc003fsb.2_Missense_Mutation_p.G255E|TP63_uc003fsc.2_Missense_Mutation_p.G255E|TP63_uc003fsd.2_Missense_Mutation_p.G255E|TP63_uc010hzd.1_Missense_Mutation_p.G170E|TP63_uc003fse.1_Missense_Mutation_p.G230E	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	349					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCTTGCCCAGGAAGAGACAGG	0.488									Hay-Wells_syndrome	HNSCC(45;0.13)			8	54					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189691750	189691750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:189691750G>A	uc011bsk.1	-	10	1884	c.1496C>T	c.(1495-1497)CCC>CTC	p.P499L	LEPREL1_uc003fsg.2_Missense_Mutation_p.P318L	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	499					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGGTGTATGGGGTGAAGTTTT	0.348													24	233					0	0	1	0	0
TMEM207	131920	broad.mit.edu	37	3	190167526	190167526	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:190167526G>A	uc003fsj.2	-	1	140	c.73C>T	c.(73-75)CAG>TAG	p.Q25*		NM_207316	NP_997199	Q6UWW9	TM207_HUMAN	transmembrane protein 207 precursor	25						integral to membrane					0	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.0176)		ATAGTTACCTGGAATAGCGGC	0.408													5	43					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193132441	193132441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:193132441G>A	uc003ftd.2	-	26	3049	c.2941C>T	c.(2941-2943)CTC>TTC	p.L981F	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	981	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GCCAGGCTGAGAAGAATGTTG	0.498													6	74					0	0	1	0	0
C3orf21	152002	broad.mit.edu	37	3	194877306	194877306	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:194877306G>A	uc003fum.3	-	3	765	c.657C>T	c.(655-657)ATC>ATT	p.I219I	C3orf21_uc003ful.2_Silent_p.I16I|C3orf21_uc011bsw.1_Silent_p.I73I	NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	219						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		TGATCTGCAGGATCTCTGCGG	0.522													6	98					0	0	1	0	0
TNK2	10188	broad.mit.edu	37	3	195595280	195595280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:195595280G>A	uc003fvu.1	-	12	2387	c.1844C>T	c.(1843-1845)CCC>CTC	p.P615L	TNK2_uc003fvq.1_Missense_Mutation_p.P22L|TNK2_uc003fvr.1_Missense_Mutation_p.P140L|TNK2_uc003fvs.1_Missense_Mutation_p.P647L|TNK2_uc003fvt.1_Missense_Mutation_p.P693L|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_3'UTR	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	615	Pro-rich.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	GGGGTGCAGGGGCCGGGGCAG	0.731													8	40					0	0	1	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955082	195955082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr3:195955082G>A	uc003fwd.2	+	5	660	c.459G>A	c.(457-459)ATG>ATA	p.M153I	OSTalpha_uc010iac.1_Missense_Mutation_p.M37I|OSTalpha_uc003fwe.2_Missense_Mutation_p.M20I	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	153						integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		ACACCCCGATGATGGTCCACA	0.512													17	223					0	0	1	0	0
OTOP1	133060	broad.mit.edu	37	4	4199694	4199694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:4199694C>T	uc003ghp.1	-	5	897	c.867G>A	c.(865-867)TGG>TGA	p.W289*		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	289	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGATGTTCTTCCACAGGACGT	0.562													4	101					0	0	1	0	0
ZBTB49	166793	broad.mit.edu	37	4	4303919	4303919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:4303919C>T	uc003ghu.2	+	3	531	c.356C>T	c.(355-357)TCA>TTA	p.S119L	ZBTB49_uc003ghv.2_Intron|ZBTB49_uc010icy.2_RNA|ZBTB49_uc010icz.2_5'Flank	NM_145291	NP_660334	Q6ZSB9	ZBT49_HUMAN	zinc finger protein 509	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TTTTTAAAATCAGCCACTGTA	0.418													5	104					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6086614	6086614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:6086614C>T	uc003giu.3	-	5	1189	c.913G>A	c.(913-915)GAA>AAA	p.E305K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E305K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E140K|JAKMIP1_uc010idd.1_Missense_Mutation_p.E305K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.E140K|JAKMIP1_uc003giv.3_Missense_Mutation_p.E305K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E305K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	305	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTTCTGTCTTCCAGCTTCCGT	0.443													23	291					0	0	1	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435454	7435454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:7435454G>A	uc011bwj.1	-	1	1247	c.1153C>T	c.(1153-1155)CCA>TCA	p.P385S	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	385					sphingolipid metabolic process	extracellular region|lysosome					0						TCCCACTCTGGGGACGGCACG	0.612													8	82					0	0	1	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435545	7435545	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:7435545G>A	uc011bwj.1	-	1	1156	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	354	Saposin B-type 3.				sphingolipid metabolic process	extracellular region|lysosome					0						TCTCTGGGGTGATTTTGGCCA	0.602													8	218					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784543	9784543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:9784543C>T	uc003gmb.3	+	1	1286	c.890C>T	c.(889-891)ACC>ATC	p.T297I		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	297	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GTTCTCAAGACCCTGTCGGTG	0.632													6	79					0	0	1	0	0
FGFBP2	83888	broad.mit.edu	37	4	15964460	15964460	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:15964460T>A	uc003gon.2	-	1	400	c.293A>T	c.(292-294)GAG>GTG	p.E98V		NM_031950	NP_114156	Q9BYJ0	FGFP2_HUMAN	killer-specific secretory protein of 37 kDa	98						extracellular space	growth factor binding				0						GCGCCTCAGCTCCTGCAGGGC	0.627													7	39					0	0	1	0	0
LDB2	9079	broad.mit.edu	37	4	16510261	16510261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:16510261G>A	uc003goz.2	-	7	1104	c.788C>T	c.(787-789)TCC>TTC	p.S263F	LDB2_uc003gpa.2_Missense_Mutation_p.S263F|LDB2_uc003gpb.2_Missense_Mutation_p.S263F|LDB2_uc011bxh.1_Missense_Mutation_p.S235F|LDB2_uc010iee.2_Missense_Mutation_p.S263F|LDB2_uc003goy.2_Missense_Mutation_p.S138F|LDB2_uc011bxi.1_Missense_Mutation_p.S139F	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	263							LIM domain binding|transcription cofactor activity				0						GCTGCTGGTGGAATTTTTCCT	0.493													3	49					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20569216	20569216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:20569216G>A	uc003gpr.1	+	28	3130	c.2926G>A	c.(2926-2928)GAA>AAA	p.E976K	SLIT2_uc003gps.1_Missense_Mutation_p.E968K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	976	EGF-like 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCACTTAAAGGAAGGAGAAGA	0.433													5	43					0	0	1	0	0
GPR125	166647	broad.mit.edu	37	4	22389748	22389748	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:22389748G>A	uc003gqm.1	-	19	3811	c.3546C>T	c.(3544-3546)AGC>AGT	p.S1182S	GPR125_uc010ieo.1_Silent_p.S1038S|GPR125_uc003gql.1_Silent_p.S309S	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	1182	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				CTGTGAGTCGGCTTGCCCGGT	0.493													5	43					0	0	1	0	0
GBA3	57733	broad.mit.edu	37	4	22749192	22749192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:22749192G>A	uc003gqp.3	+	3	651	c.560G>A	c.(559-561)GGG>GAG	p.G187E	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.G188E	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	187					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						CCTCACTTTGGGACTGGAGGT	0.438													7	90					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005547	25005547	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:25005547G>A	uc003grf.2	-	8	1263	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	388	EAR 4.					extracellular region					0		Breast(46;0.173)				GGCTGGACAGGATGAGATGCG	0.502													4	102					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25677814	25677814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:25677814C>T	uc003grr.2	+	13	1597	c.1516C>T	c.(1516-1518)CCG>TCG	p.P506S	SLC34A2_uc003grs.2_Missense_Mutation_p.P505S|SLC34A2_uc010iev.2_Missense_Mutation_p.P505S	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	506	Helical; Name=M6; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GTACCCGATCCCGTTCACTCG	0.562													6	115					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25836914	25836914	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:25836914G>A	uc003gru.3	-	3	917	c.765C>T	c.(763-765)GCC>GCT	p.A255A		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	255						integral to membrane	binding				0						CTCCACTGGAGGCATAAGGAA	0.488													5	93					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36093627	36093627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:36093627C>T	uc003gsq.1	-	28	4639	c.4301G>A	c.(4300-4302)GGA>GAA	p.G1434E		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1434	PH 5.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTTGATGCTTCCCAGTGTACT	0.328													7	91					0	0	1	0	0
PGM2	55276	broad.mit.edu	37	4	37846083	37846083	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:37846083T>C	uc011byb.1	+	7	891	c.818T>C	c.(817-819)GTT>GCT	p.V273A	PGM2_uc011bya.1_Missense_Mutation_p.V134A|PGM2_uc011byc.1_Missense_Mutation_p.V113A	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	273					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						TTTGACCTTGTTCCTCCTGAG	0.498													9	125					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38091654	38091654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:38091654C>T	uc003gtb.2	+	13	2495	c.2152C>T	c.(2152-2154)CGT>TGT	p.R718C	TBC1D1_uc011byd.1_Missense_Mutation_p.R812C|TBC1D1_uc010ifd.2_Missense_Mutation_p.R505C|TBC1D1_uc011byf.1_Missense_Mutation_p.R589C	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	718						nucleus	Rab GTPase activator activity			ovary(1)	1						AAGGACATCTCGTGAGCTCCG	0.488													9	63					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440154	40440154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:40440154G>A	uc003gvc.2	-	4	1467	c.757C>T	c.(757-759)CTC>TTC	p.L253F	RBM47_uc003gvd.2_Missense_Mutation_p.L253F|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.L215F|RBM47_uc003gvg.1_Missense_Mutation_p.L253F	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	253	RRM 3.					nucleus	nucleotide binding|RNA binding			breast(3)	3						TCGATCATGAGGTTGCGCACG	0.612													8	156					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42145696	42145696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:42145696G>A	uc003gwn.2	-	3	1383	c.803C>T	c.(802-804)TCG>TTG	p.S268L	BEND4_uc003gwm.2_Missense_Mutation_p.S268L|BEND4_uc011byy.1_Missense_Mutation_p.S268L	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	268											0						ACTGGCTGACGAGGGGTTTGG	0.493													4	42					0	0	1	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895585	42895585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:42895585G>A	uc003gwt.2	+	1	302	c.302G>A	c.(301-303)AGC>AAC	p.S101N		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	101					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AACATTTTAAGCAAAAATGGC	0.428													4	86					0	0	1	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895590	42895590	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:42895590A>T	uc003gwt.2	+	1	307	c.307A>T	c.(307-309)AAT>TAT	p.N103Y		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	103					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TTTAAGCAAAAATGGCACAGT	0.428													5	87					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46043129	46043129	+	Missense_Mutation	SNP	C	T	T	rs75184362		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:46043129C>T	uc003gxb.2	-	9	1426	c.1274G>A	c.(1273-1275)GGA>GAA	p.G425E		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	425	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CCTCCAAGATCCTGTTCTGCA	0.408													7	56					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47593257	47593257	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:47593257T>C	uc003gxk.1	+	23	4304	c.4140T>C	c.(4138-4140)TCT>TCC	p.S1380S	ATP10D_uc003gxl.1_Silent_p.S628S	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1380	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CTGGCCCTTCTGCTGTATTTG	0.448													3	82					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47593304	47593304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:47593304G>A	uc003gxk.1	+	23	4351	c.4187G>A	c.(4186-4188)GGA>GAA	p.G1396E	ATP10D_uc003gxl.1_Missense_Mutation_p.G644E	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1396	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						ATTGAGCAAGGAAACTTATCT	0.458													6	86					0	0	1	0	0
SLC10A4	201780	broad.mit.edu	37	4	48486970	48486970	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:48486970C>T	uc003gyc.2	+	2	831	c.612C>T	c.(610-612)TCC>TCT	p.S204S		NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	204	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						CCATCTCCTCCACGCTTCTGG	0.507													9	294					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861650	52861651	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:52861650_52861651GG>AA	uc003gzi.2	-	4	1550_1551	c.1537_1538CC>TT	c.(1537-1539)CCA>TTA	p.P513L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	513						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						ACCGGCATGTGGATGTCTCTGG	0.525													8	142					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55133531	55133531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:55133531G>A	uc003han.3	+	6	1166	c.835G>A	c.(835-837)GAG>AAG	p.E279K	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.E173K|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	279	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GACGGTCCCCGAGGCCACGGT	0.483			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			4	74					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55980371	55980371	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:55980371T>A	uc003has.2	-	6	1022	c.720A>T	c.(718-720)GAA>GAT	p.E240D	KDR_uc003hat.1_Missense_Mutation_p.E240D|KDR_uc011bzx.1_Missense_Mutation_p.E240D	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	240	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AGACAAGCTTTTCTCCAACAG	0.393			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			4	60					0	0	1	0	0
EXOC1	55763	broad.mit.edu	37	4	56759717	56759717	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:56759717G>A	uc003hbe.1	+	15	1883	c.1725_splice	c.e15-1	p.E575_splice	EXOC1_uc003hbf.1_Splice_Site_p.E575_splice|EXOC1_uc003hbg.1_Splice_Site_p.E560_splice	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1						exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					TTTCTGAACAGGAAAGATATG	0.348													6	47					0	0	1	0	0
TECRL	253017	broad.mit.edu	37	4	65165729	65165729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:65165729C>T	uc003hcv.2	-	8	846	c.737G>A	c.(736-738)GGA>GAA	p.G246E		NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	246					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						TTGCCTGTTTCCAAATGCTGG	0.299													11	113					0	0	1	0	0
TECRL	253017	broad.mit.edu	37	4	65175614	65175614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:65175614C>T	uc003hcv.2	-	6	696	c.587G>A	c.(586-588)CGA>CAA	p.R196Q	TECRL_uc003hcw.2_Missense_Mutation_p.R196Q	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	196					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						CAAAAGGTATCGGATGTAGTG	0.343													7	96					0	0	1	0	0
STAP1	26228	broad.mit.edu	37	4	68441139	68441139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:68441139C>T	uc003hde.3	+	3	311	c.229C>T	c.(229-231)CTT>TTT	p.L77F	STAP1_uc003hdf.2_Missense_Mutation_p.L77F	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	77	PH.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						CCTCACATGCCTTACTGAGCA	0.393													6	80					0	0	1	0	0
STAP1	26228	broad.mit.edu	37	4	68459033	68459033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:68459033G>A	uc003hde.3	+	8	867	c.785G>A	c.(784-786)GGA>GAA	p.G262E	STAP1_uc003hdf.2_Missense_Mutation_p.G262E	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	262	SH2.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						GAGACTCGAGGAAATTTAAGA	0.323													9	111					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69692167	69692167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:69692167G>A	uc003hee.2	+	4	1064	c.1039G>A	c.(1039-1041)GGT>AGT	p.G347S	UGT2B10_uc011cam.1_Missense_Mutation_p.G263S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	347					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AGATGCCTTAGGTCTCAATAC	0.378													9	89					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69696465	69696465	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:69696465C>T	uc003hee.2	+	6	1480	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	UGT2B10_uc011cam.1_Silent_p.F401F	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	485					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TCACCTGGTTCCAGTACCACT	0.483													8	182					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079874	70079874	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:70079874G>A	uc003heh.2	-	1	576	c.567C>T	c.(565-567)TTC>TTT	p.F189F	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	189					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						AGGAAGGAGGGAAAATCAGTC	0.403													5	50					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70148320	70148320	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:70148320C>T	uc003hej.2	+	2	812	c.810C>T	c.(808-810)TTC>TTT	p.F270F	UGT2B28_uc010ihr.2_Silent_p.F270F	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	270					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	CTCATCCATTCTTACCAAACA	0.413													8	135					0	0	1	0	0
SMR3A	26952	broad.mit.edu	37	4	71232511	71232511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71232511C>T	uc003hfg.1	+	3	286	c.205C>T	c.(205-207)CCA>TCA	p.P69S	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	69	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				ACCCCTTTCTCCACCCTATGG	0.547													18	154					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275788	71275788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71275788G>A	uc003hfi.2	+	3	917	c.743G>A	c.(742-744)GGT>GAT	p.G248D		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	248					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GCCATTTTTGGTTGAACATGC	0.368													7	35					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71346528	71346528	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71346528C>T	uc011cat.1	+	4	355	c.67C>T	c.(67-69)CGA>TGA	p.R23*	MUC7_uc011cau.1_Nonsense_Mutation_p.R23*|MUC7_uc003hfj.2_Nonsense_Mutation_p.R23*	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	23						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CAGTGAAGGTCGAGAAAGGGA	0.249													3	64					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71384527	71384527	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71384527A>G	uc003hfk.1	+	2	122	c.33A>G	c.(31-33)CTA>CTG	p.L11L	AMTN_uc010ihy.1_Silent_p.L11L	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	11					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			TTTGTCTTCTAGGATCAACTC	0.388													4	103					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71472088	71472088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71472088C>T	uc003hfl.2	+	13	1060	c.985C>T	c.(985-987)CCG>TCG	p.P329S		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	329					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel	p.P329L(1)		ovary(3)|skin(1)	4			Lung(101;0.235)			CTCCCCTATGCCGGAGGCCAA	0.567													3	16					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71501554	71501554	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:71501554C>T	uc011caw.1	+	7	758	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	159					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TCTAGGCATTCCCACCATTTG	0.338													8	159					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74275204	74275205	+	Splice_Site	DNP	GG	AA	AA	rs75828235		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:74275204_74275205GG>AA	uc003hgs.3	+	5	688	c.615_splice	c.e5+1	p.K205_splice	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Splice_Site|ALB_uc003hgt.3_Splice_Site_p.K205_splice|ALB_uc010iii.2_Splice_Site_p.K90_splice|ALB_uc003hgu.3_Splice_Site_p.K55_splice|ALB_uc003hgv.3_Splice_Site|ALB_uc011cbf.1_Splice_Site_p.K95_splice|ALB_uc010iij.2_Splice_Site|ALB_uc003hgx.3_Splice_Site	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein						bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGTTGCCAAAGGTATTATGCAA	0.386													3	62					0	0	1	0	0
RASSF6	166824	broad.mit.edu	37	4	74442366	74442366	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:74442366G>A	uc003hhd.1	-	9	1023	c.900C>T	c.(898-900)TTC>TTT	p.F300F	RASSF6_uc003hhc.1_Silent_p.F268F|RASSF6_uc010iik.1_Silent_p.F234F|RASSF6_uc010iil.1_Silent_p.F256F	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	300	Ras-associating.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			TATCCATGAGGAAAATGCGAG	0.428													9	158					0	0	1	0	0
EREG	2069	broad.mit.edu	37	4	75245188	75245188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:75245188C>T	uc003hie.1	+	2	257	c.91C>T	c.(91-93)CTC>TTC	p.L31F	EREG_uc003hid.2_Missense_Mutation_p.L25F	NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	31					angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			ACAGGCAGTCCTCAGTACAAC	0.373													14	180					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75938171	75938171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:75938171G>A	uc003hih.1	+	2	820	c.580G>A	c.(580-582)GAG>AAG	p.E194K		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	194	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						AACTGCACCAGAGTCCCCGAC	0.567													11	191					0	0	1	0	0
SDAD1	55153	broad.mit.edu	37	4	76879080	76879080	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:76879080T>C	uc003hje.3	-	18	1617	c.1498A>G	c.(1498-1500)ACC>GCC	p.T500A	SDAD1_uc003hjf.3_Missense_Mutation_p.T403A|SDAD1_uc011cbr.1_Missense_Mutation_p.T463A	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	500					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CTGAGACTGGTACTTTCCCAT	0.408													18	166					0	0	1	0	0
NUP54	53371	broad.mit.edu	37	4	77057348	77057348	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:77057348G>A	uc003hjs.2	-	4	641	c.513C>T	c.(511-513)TGC>TGT	p.C171C	NUP54_uc010ije.2_Intron|NUP54_uc011cbs.1_Intron|NUP54_uc011cbt.1_Silent_p.C123C|NUP54_uc003hjt.2_Intron	NM_017426	NP_059122	Q7Z3B4	NUP54_HUMAN	nucleoporin 54kDa	171	9 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleoplasm				ovary(1)|lung(1)	2						CCTTAAATCGGCAAAAGGGAT	0.318													8	109					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79301097	79301097	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:79301097G>A	uc003hlb.2	+	27	3950	c.3510G>A	c.(3508-3510)TGG>TGA	p.W1170*	FRAS1_uc003hkw.2_Nonsense_Mutation_p.W1170*	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1169	CSPG 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTTTTAGCTGGAAAGATGTGA	0.453													7	70					0	0	1	0	0
PAQR3	152559	broad.mit.edu	37	4	79856296	79856296	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:79856296A>G	uc003hlp.1	-	2	531	c.327T>C	c.(325-327)TCT>TCC	p.S109S	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_Intron|PAQR3_uc003hlq.1_Intron	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	109	Helical; (Potential).					Golgi membrane|integral to membrane	receptor activity				0						AAAGACAAATAGAACAAATTA	0.403													24	238					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80327916	80327916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:80327916G>A	uc003hlu.2	-	1	1457	c.1439C>T	c.(1438-1440)TCA>TTA	p.S480L		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	480					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CCTGAGAACTGACAAAGCCTG	0.493													6	115					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328297	80328297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:80328297C>T	uc003hlu.2	-	1	1076	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	353					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ATAAGAAGTTCCTACTTCTTT	0.443													6	94					0	0	1	0	0
C4orf22	255119	broad.mit.edu	37	4	81504327	81504327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:81504327G>A	uc003hmf.2	+	3	372	c.323G>A	c.(322-324)GGA>GAA	p.G108E	C4orf22_uc010ijp.2_Missense_Mutation_p.G108E	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	108										skin(2)	2						AATCGCAGTGGAAAACTGAGT	0.343													5	50					0	0	1	0	0
BMP3	651	broad.mit.edu	37	4	81966989	81966989	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:81966989G>A	uc003hmg.3	+	2	734	c.414G>A	c.(412-414)GAG>GAA	p.E138E		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	138					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						GTATTGGAGAGCTAGGAAACA	0.418													4	55					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82031727	82031727	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:82031727C>T	uc003hmh.2	-	14	1829	c.1815G>A	c.(1813-1815)CAG>CAA	p.Q605Q	PRKG2_uc011ccf.1_Silent_p.Q185Q|PRKG2_uc011ccg.1_Silent_p.Q185Q|PRKG2_uc011cch.1_Silent_p.Q576Q	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	605	Protein kinase.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TCCATGTTTTCTGTCCAGACC	0.418													4	37					0	0	1	0	0
SEC31A	22872	broad.mit.edu	37	4	83748758	83748758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:83748758G>A	uc003hnf.2	-	24	3219	c.3055C>T	c.(3055-3057)CCC>TCC	p.P1019S	SEC31A_uc003hnd.2_Missense_Mutation_p.P188S|SEC31A_uc003hne.2_Missense_Mutation_p.P768S|SEC31A_uc011ccl.1_Missense_Mutation_p.P965S|SEC31A_uc003hnl.2_Missense_Mutation_p.P866S|SEC31A_uc003hng.2_Missense_Mutation_p.P1004S|SEC31A_uc003hnh.2_Missense_Mutation_p.P1019S|SEC31A_uc003hni.2_Missense_Mutation_p.P905S|SEC31A_uc003hnj.2_Missense_Mutation_p.P980S|SEC31A_uc011ccm.1_Missense_Mutation_p.P999S|SEC31A_uc011ccn.1_Missense_Mutation_p.P1004S|SEC31A_uc003hnk.2_Missense_Mutation_p.P980S|SEC31A_uc003hnm.2_Missense_Mutation_p.P1019S	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	1019	Interaction with PDCD6.|Pro-rich.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				GATGTGATGGGAACAGGAGGC	0.433													6	208					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85555012	85555012	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:85555012C>T	uc011ccv.1	+	7	1140	c.642C>T	c.(640-642)TTC>TTT	p.F214F	CDS1_uc010ike.1_Silent_p.F18F	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	214					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		ATTAACAGTTCGCATGGACTC	0.393													7	69					0	0	1	0	0
DSPP	1834	broad.mit.edu	37	4	88535103	88535103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:88535103C>T	uc003hqu.2	+	5	1409	c.1289C>T	c.(1288-1290)TCA>TTA	p.S430L		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	430					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GGCCAAAAATCAGAACCAGGA	0.408													8	45					0	0	1	0	0
IBSP	3381	broad.mit.edu	37	4	88732864	88732864	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:88732864G>A	uc003hqx.3	+	7	854	c.756G>A	c.(754-756)GGG>GGA	p.G252G		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	252					biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		CACCTTTTGGGAAAACCACCA	0.502													4	31					0	0	1	0	0
PKD2	5311	broad.mit.edu	37	4	88967822	88967822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:88967822G>A	uc003hre.2	+	6	1414	c.1348G>A	c.(1348-1350)GGT>AGT	p.G450S	PKD2_uc011cdf.1_Intron	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	450	Extracellular (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		AGCAACAGGTGGTGTGATTCC	0.378													8	108					0	0	1	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95201837	95201837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:95201837G>A	uc003htc.3	+	20	2768	c.2513G>A	c.(2512-2514)CGA>CAA	p.R838Q	SMARCAD1_uc003htb.3_Missense_Mutation_p.R840Q|SMARCAD1_uc003htd.3_Missense_Mutation_p.R840Q|SMARCAD1_uc010ila.2_Missense_Mutation_p.R703Q|SMARCAD1_uc011cdw.1_Missense_Mutation_p.R408Q	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	838					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		AAACAGTACCGACACATTAAT	0.353													14	140					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96762131	96762131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:96762131C>T	uc003htr.3	+	1	893	c.830C>T	c.(829-831)CCC>CTC	p.P277L		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	277					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	GGAAAGGGGCCCATACTGATG	0.448													6	72					0	0	1	0	0
ADH4	127	broad.mit.edu	37	4	100057780	100057780	+	Missense_Mutation	SNP	C	T	T	rs139053416		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:100057780C>T	uc003hun.2	-	5	495	c.419G>A	c.(418-420)GGA>GAA	p.G140E	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.G159E	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	140					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding	p.G140E(1)		skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	AACTGGTTTTCCTTTGCAGGT	0.348													4	57					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100232789	100232789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:100232789C>T	uc003hus.3	-	7	937	c.853G>A	c.(853-855)GAG>AAG	p.E285K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E245K|ADH1B_uc011ceh.1_Missense_Mutation_p.E130K|ADH1B_uc011cei.1_Missense_Mutation_p.E245K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	285					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CCACATGCCTCATGACAACAT	0.473													11	138					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100239257	100239257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:100239257C>T	uc003hus.3	-	3	289	c.205G>A	c.(205-207)GAG>AAG	p.E69K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E29K|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.E29K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	69					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CCGGCTGCCTCATGGCCTAAA	0.522													11	197					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100273823	100273823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:100273823C>T	uc003huu.2	-	1	95	c.10G>A	c.(10-12)GCA>ACA	p.A4T		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	4					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACTTTTCCTGCTGTGCTCATA	0.318									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				5	111					0	0	1	0	0
RG9MTD2	93587	broad.mit.edu	37	4	100470360	100470360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:100470360G>A	uc003huy.2	-	8	1218	c.905C>T	c.(904-906)TCG>TTG	p.S302L	RG9MTD2_uc003huz.3_Missense_Mutation_p.S302L|RG9MTD2_uc003hva.3_Missense_Mutation_p.S302L	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	302							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		ATCACTGTCCGATCCACCTTC	0.443													11	116					0	0	1	0	0
NHEDC1	150159	broad.mit.edu	37	4	103870452	103870452	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:103870452A>T	uc003hww.2	-	4	466	c.344T>A	c.(343-345)ATT>AAT	p.I115N	NHEDC1_uc003hwu.2_Missense_Mutation_p.I115N|NHEDC1_uc010ilm.2_5'UTR|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Intron	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	115	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		AGGTATTCTAATGAGTTGTAA	0.338													6	48					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104080213	104080213	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:104080213T>A	uc003hxb.1	-	22	2645	c.2555A>T	c.(2554-2556)AAA>ATA	p.K852I	CENPE_uc003hxc.1_Missense_Mutation_p.K827I	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	852	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTGGGCTTCTTTAGAGAGATT	0.378													4	35					0	0	1	0	0
GAR1	54433	broad.mit.edu	37	4	110745161	110745161	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:110745161C>T	uc003hzt.2	+	6	919	c.612C>T	c.(610-612)TTC>TTT	p.F204F	GAR1_uc003hzu.2_Silent_p.F204F|GAR1_uc010imi.2_Silent_p.F186F	NM_018983	NP_061856	Q9NY12	GAR1_HUMAN	nucleolar protein family A, member 1	204	RGG-box 2.				rRNA processing|snRNA pseudouridine synthesis	box H/ACA snoRNP complex|Cajal body	cation channel activity|pseudouridine synthase activity|snoRNA binding				0						GTGGGGGCTTCAGAGGAGGAA	0.313													8	140					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111470552	111470552	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:111470552T>G	uc003iab.3	+	15	2544	c.2202T>G	c.(2200-2202)AAT>AAG	p.N734K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	734	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TGGGATGGAATGATGCTGGAG	0.308													4	56					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111474497	111474497	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:111474497A>G	uc003iab.3	+	18	2870	c.2528A>G	c.(2527-2529)AAC>AGC	p.N843S		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	843	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AAGGACACGAACCTTATTAAA	0.363													5	76					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111482565	111482565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:111482565G>A	uc003iab.3	+	20	3067	c.2725G>A	c.(2725-2727)GAG>AAG	p.E909K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	909	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TTTCTAGATGGAGAGCTTTTT	0.368													3	40					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115751004	115751004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:115751004C>T	uc003ibu.2	-	13	3120	c.2441G>A	c.(2440-2442)GGA>GAA	p.G814E	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	814	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTTTGTCTTTCCTCCTTCCAG	0.333													5	60					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115858481	115858481	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:115858481C>G	uc003ibu.2	-	5	2079	c.1400G>C	c.(1399-1401)AGC>ACC	p.S467T	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	467	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CACCATGATGCTATTGTGAAT	0.438													4	93					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997280	115997280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:115997280G>A	uc003ibu.2	-	2	1592	c.913C>T	c.(913-915)CTT>TTT	p.L305F	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	305	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATGTCCACAAGGATGTACCTG	0.403													8	88					0	0	1	0	0
TRAM1L1	133022	broad.mit.edu	37	4	118005809	118005809	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:118005809C>T	uc003ibv.3	-	1	928	c.741G>A	c.(739-741)CAG>CAA	p.Q247Q		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	247	Cytoplasmic (Potential).|TLC.				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						ATATGCCTTTCTGGTACTTTT	0.408													4	59					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119026233	119026233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:119026233G>A	uc003ibx.2	+	3	1445	c.1042G>A	c.(1042-1044)GGA>AGA	p.G348R	NDST3_uc011cgf.1_Intron	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	348	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						ATTCAACCTGGGATTTTCAGG	0.249													8	121					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951218	119951218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:119951218G>A	uc003icm.3	+	4	1484	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	SYNPO2_uc010ina.2_Missense_Mutation_p.E430K|SYNPO2_uc010inb.2_Missense_Mutation_p.E430K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.E358K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	430						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGGTGACAAGGAGGATACATG	0.493													6	89					0	0	1	0	0
ANKRD50	57182	broad.mit.edu	37	4	125592575	125592575	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:125592575A>T	uc003ifg.3	-	3	2123	c.1857T>A	c.(1855-1857)GCT>GCA	p.A619A	ANKRD50_uc011cgo.1_Silent_p.A440A|ANKRD50_uc010inw.2_Silent_p.A619A	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	619	ANK 5.									central_nervous_system(1)	1						GGCCACCCCAAGCAGCAGATC	0.448													4	109					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126242291	126242291	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:126242291C>T	uc003ifj.3	+	1	4725	c.4725C>T	c.(4723-4725)TTC>TTT	p.F1575F		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1575	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGACACCTTCATTGTTGATC	0.458													7	154					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126370525	126370525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:126370525C>T	uc003ifj.3	+	9	8354	c.8354C>T	c.(8353-8355)TCC>TTC	p.S2785F	FAT4_uc011cgp.1_Missense_Mutation_p.S1083F|FAT4_uc003ifi.1_Missense_Mutation_p.S263F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2785	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCTGAAAATTCCCCCTTAGGA	0.363													8	121					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126370866	126370866	+	Missense_Mutation	SNP	C	T	T	rs139451014		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:126370866C>T	uc003ifj.3	+	9	8695	c.8695C>T	c.(8695-8697)CCT>TCT	p.P2899S	FAT4_uc011cgp.1_Missense_Mutation_p.P1197S|FAT4_uc003ifi.1_Missense_Mutation_p.P377S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2899	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.P2899S(2)		ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCAACAGATCCTGATGAGGG	0.363													7	99					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372585	126372585	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:126372585A>G	uc003ifj.3	+	9	10414	c.10414A>G	c.(10414-10416)ACC>GCC	p.T3472A	FAT4_uc011cgp.1_Missense_Mutation_p.T1770A|FAT4_uc003ifi.1_Missense_Mutation_p.T950A	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3472	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGATCGAGAAACCCTTCCCAT	0.433													7	62					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128577864	128577864	+	Silent	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:128577864T>G	uc003ifk.1	+	3	826	c.756T>G	c.(754-756)CCT>CCG	p.P252P	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	252	PDZ.									ovary(1)	1						CTTGCATTCCTGGACCTATGC	0.328													6	96					0	0	1	0	0
INTU	27152	broad.mit.edu	37	4	128632252	128632252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:128632252G>A	uc003ifk.1	+	14	2624	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	852										ovary(1)	1						GACATTGGTGGAAGAGGTAGG	0.408													4	29					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138442555	138442555	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:138442555G>A	uc003ihe.3	-	4	3423	c.3036C>T	c.(3034-3036)TTC>TTT	p.F1012F	PCDH18_uc003ihf.3_Silent_p.F1004F|PCDH18_uc011cgz.1_Silent_p.F223F|PCDH18_uc003ihg.3_Silent_p.F791F|PCDH18_uc011cha.1_Silent_p.F192F	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1012	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AGAGACGCTGGAACACACTGC	0.532													7	48					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138449716	138449716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:138449716C>T	uc003ihe.3	-	3	3043	c.2656G>A	c.(2656-2658)GAT>AAT	p.D886N	PCDH18_uc003ihf.3_Missense_Mutation_p.D878N|PCDH18_uc011cgz.1_Missense_Mutation_p.D97N|PCDH18_uc003ihg.3_Missense_Mutation_p.D665N|PCDH18_uc011cha.1_Missense_Mutation_p.D66N	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	886	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CGCCCCAAATCATAATCACTG	0.448													15	261					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138449913	138449913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:138449913C>T	uc003ihe.3	-	2	2936	c.2549G>A	c.(2548-2550)CGA>CAA	p.R850Q	PCDH18_uc003ihf.3_Missense_Mutation_p.R842Q|PCDH18_uc011cgz.1_Missense_Mutation_p.R61Q|PCDH18_uc003ihg.3_Missense_Mutation_p.R629Q|PCDH18_uc011cha.1_Missense_Mutation_p.R30Q	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	850	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTTGTTTCCTCGAAAACTTGG	0.373													5	95					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138449940	138449940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:138449940C>T	uc003ihe.3	-	2	2909	c.2522G>A	c.(2521-2523)GGG>GAG	p.G841E	PCDH18_uc003ihf.3_Missense_Mutation_p.G833E|PCDH18_uc011cgz.1_Missense_Mutation_p.G52E|PCDH18_uc003ihg.3_Missense_Mutation_p.G620E|PCDH18_uc011cha.1_Missense_Mutation_p.G21E	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	841	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CTGATATTGCCCCTGGTGAAG	0.403													3	86					0	0	1	0	0
SETD7	80854	broad.mit.edu	37	4	140432981	140432981	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:140432981A>T	uc003ihw.2	-	8	1223	c.937T>A	c.(937-939)TTT>ATT	p.F313I		NM_030648	NP_085151	Q8WTS6	SETD7_HUMAN	SET domain-containing protein 7	313	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.156)					ATGGGCCCAAAACGGGGGTGG	0.577													4	77					0	0	1	0	0
ELMOD2	255520	broad.mit.edu	37	4	141458692	141458692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:141458692G>A	uc003iik.2	+	5	488	c.396G>A	c.(394-396)ATG>ATA	p.M132I		NM_153702	NP_714913	Q8IZ81	ELMD2_HUMAN	ELMO/CED-12 domain containing 2	132	ELMO.				phagocytosis|regulation of defense response to virus|response to virus	cytoskeleton	GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)					AGCTACTCATGAAGGTAAATT	0.363													5	64					0	0	1	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148744081	148744081	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:148744081G>A	uc003ilf.2	+	3	285	c.285G>A	c.(283-285)AAG>AAA	p.K95K	ARHGAP10_uc003ile.1_Silent_p.K95K	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	95	BAR.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		ATTTTTTGAAGAATCTGGAGG	0.363													4	44					0	0	1	0	0
SH3D19	152503	broad.mit.edu	37	4	152096067	152096067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:152096067G>A	uc010ipl.1	-	7	1539	c.449C>T	c.(448-450)TCC>TTC	p.S150F	SH3D19_uc003imc.2_Missense_Mutation_p.S150F|SH3D19_uc003ime.2_Missense_Mutation_p.S150F|SH3D19_uc010ipm.2_Missense_Mutation_p.S150F	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	150	Pro-rich.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GTTTTCTGAGGAAACAGATTT	0.562													11	185					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153864362	153864362	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:153864362G>C	uc003inf.2	+	1	228	c.153G>C	c.(151-153)AGG>AGC	p.R51S		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	51					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CATGTTCAAGGGAAGAGTGTC	0.463													5	27					0	0	1	0	0
RNF175	285533	broad.mit.edu	37	4	154649469	154649469	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:154649469C>T	uc003int.2	-	4	664	c.291G>A	c.(289-291)ACG>ACA	p.T97T	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	97	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ATAATTTTATCGTGAAATATA	0.453													10	146					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155252751	155252751	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:155252751G>A	uc003inw.2	-	10	2349	c.2349C>T	c.(2347-2349)TTC>TTT	p.F783F	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	783	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ctaattcacagaaCAGAGACT	0.224													3	22					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505313	155505313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:155505313G>A	uc003iod.1	-	6	2622	c.2564C>T	c.(2563-2565)GCT>GTT	p.A855V		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	855	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CATGCGAACAGCCCTGAGGGA	0.478													4	86					0	0	1	0	0
FGG	2266	broad.mit.edu	37	4	155530860	155530860	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:155530860T>C	uc003ioj.2	-	6	729	c.588A>G	c.(586-588)AAA>AAG	p.K196K	FGG_uc003iog.2_Silent_p.K196K|FGG_uc003ioh.2_Silent_p.K204K|FGG_uc010ipx.2_Silent_p.K24K|FGG_uc010ipy.2_5'UTR|FGG_uc003ioi.2_5'UTR|FGG_uc003iok.2_Silent_p.K204K	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	196	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CTTTCAGAGGTTTAATAAAGT	0.408													4	62					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156136174	156136174	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:156136174G>A	uc003ioq.2	+	2	1578	c.1083G>A	c.(1081-1083)AAG>AAA	p.K361K	NPY2R_uc003ior.2_Silent_p.K361K	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	361	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity	p.K361R(1)		lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				AGGCTAAAAAGAACCTGGAGG	0.483													4	78					0	0	1	0	0
MAP9	79884	broad.mit.edu	37	4	156294426	156294426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:156294426C>T	uc003ios.2	-	4	607	c.343G>A	c.(343-345)GAA>AAA	p.E115K	MAP9_uc011cin.1_Missense_Mutation_p.E115K|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.E115K|MAP9_uc010iqb.1_Missense_Mutation_p.E43K	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	115					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		GGTGCCATTTCCTCTTCATTT	0.328													9	106					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634325	156634325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:156634325G>A	uc003iov.2	+	8	1698	c.1162G>A	c.(1162-1164)GAC>AAC	p.D388N	GUCY1A3_uc010iqc.2_Missense_Mutation_p.D388N|GUCY1A3_uc003iow.2_Missense_Mutation_p.D388N|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D387N|GUCY1A3_uc003iox.2_Missense_Mutation_p.D388N|GUCY1A3_uc003ioz.2_Missense_Mutation_p.D153N|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D388N|GUCY1A3_uc010iqe.2_Missense_Mutation_p.D153N|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D388N	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	388					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ACCCTGTGTGGACAGATTAGA	0.453													3	41					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158057740	158057740	+	Nonsense_Mutation	SNP	G	A	A	rs62636642		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:158057740G>A	uc003ipj.2	+	5	619	c.417G>A	c.(415-417)TGG>TGA	p.W139*		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	139	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AGTGTTTATGGAAACCTGATT	0.408													6	64					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160274695	160274695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:160274695C>T	uc003iqg.3	+	22	3975	c.3665C>T	c.(3664-3666)TCT>TTT	p.S1222F		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1222					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		ACAGTAATTTCTTCTCCAAGC	0.488													6	92					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164246577	164246577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:164246577C>T	uc003iqm.1	-	3	1299	c.1033G>A	c.(1033-1035)GAT>AAT	p.D345N	NPY1R_uc011cjj.1_Missense_Mutation_p.D102N	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	345	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCATAATCATCATCCCGAGAC	0.398													6	114					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169085350	169085350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:169085350G>A	uc003irm.2	+	5	456	c.311G>A	c.(310-312)GGA>GAA	p.G104E	ANXA10_uc003irn.2_5'Flank	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	104	Annexin 2.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		TTTCTCTAGGGAGTAGGCACT	0.363													3	37					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169201578	169201578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:169201578G>A	uc003irp.2	-	14	2178	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	629							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ACTTTTACAGGATTTCAAAAA	0.373													6	47					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	172735764	172735764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:172735764G>A	uc003isv.2	+	2	769	c.33G>A	c.(31-33)ATG>ATA	p.M11I		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	11	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						TTCTGCAGATGACTTTGTTGT	0.458													5	56					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183245366	183245366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:183245366G>A	uc003ivd.1	+	1	230	c.193G>A	c.(193-195)GAT>AAT	p.D65N	ODZ3_uc010irv.1_Missense_Mutation_p.D65N	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	65	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGAGTGAAGGATTTGGTTCA	0.478													6	60					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183652216	183652216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:183652216C>T	uc003ivd.1	+	15	2928	c.2891C>T	c.(2890-2892)CCC>CTC	p.P964L	ODZ3_uc003ive.1_Missense_Mutation_p.P370L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	964	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGGCCAAATCCCATCATTGTG	0.418													6	33					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183713986	183713986	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:183713986A>T	uc003ivd.1	+	25	6198	c.6161A>T	c.(6160-6162)GAG>GTG	p.E2054V		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2054	YD 14.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGCAAAGTTGAGCAGTTTGGA	0.403													4	63					0	0	1	0	0
C4orf41	60684	broad.mit.edu	37	4	184587497	184587497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:184587497G>A	uc003ivx.2	+	3	468	c.292G>A	c.(292-294)GTT>ATT	p.V98I	C4orf41_uc003ivw.2_Missense_Mutation_p.V98I|C4orf41_uc010isc.2_Intron	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	98											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		AGCCCTGGTGGTTGTGTTCTA	0.463													7	105					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545077	186545077	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:186545077C>T	uc003iyl.2	-	13	2352	c.1494G>A	c.(1492-1494)ACG>ACA	p.T498T	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.T598T|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.T402T|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.T612T|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	498						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GCACCTCCTCCGTGGAGCACT	0.572													7	99					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187201273	187201273	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:187201273C>A	uc003iza.1	+	8	1196	c.863C>A	c.(862-864)CCA>CAA	p.P288Q		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	288					blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CACAGCATCCCAGGTAAACTG	0.502													5	44					1	1	1	1	0
FAT1	2195	broad.mit.edu	37	4	187539302	187539302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:187539302G>A	uc003izf.2	-	10	8626	c.8438C>T	c.(8437-8439)CCA>CTA	p.P2813L		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2813	Extracellular (Potential).|Cadherin 26.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGCCTCATATGGACTAGATTC	0.458										HNSCC(5;0.00058)			9	130					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187541875	187541876	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:187541875_187541876GG>AA	uc003izf.2	-	10	6052_6053	c.5864_5865CC>TT	c.(5863-5865)TCC>TTT	p.S1955F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1955	Extracellular (Potential).|Cadherin 17.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATCTGCCATCGGAAGCTCTAAC	0.45										HNSCC(5;0.00058)			4	75					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187628027	187628027	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:187628027G>A	uc003izf.2	-	2	3143	c.2955C>T	c.(2953-2955)ATC>ATT	p.I985I	FAT1_uc010iso.1_Silent_p.I985I	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	985	Extracellular (Potential).|Cadherin 8.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACTGCTGGACGATCCTAACTG	0.468										HNSCC(5;0.00058)			11	91					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924156	188924156	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:188924156G>A	uc003izg.1	+	3	440	c.195G>A	c.(193-195)GGG>GGA	p.G65G	ZFP42_uc003izh.1_Silent_p.G65G|ZFP42_uc003izi.1_Silent_p.G65G	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	65					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		CTCTCGGAGGGGATGATTTCT	0.507													4	60					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924697	188924697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:188924697C>T	uc003izg.1	+	3	981	c.736C>T	c.(736-738)CGG>TGG	p.R246W	ZFP42_uc003izh.1_Missense_Mutation_p.R246W|ZFP42_uc003izi.1_Missense_Mutation_p.R246W	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	246	C2H2-type 3.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GAAGCCGTTTCGGTGCACTTT	0.522													6	35					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012615	189012615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:189012615G>A	uc003izl.2	-	7	1112	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F	TRIML2_uc003izj.1_Missense_Mutation_p.S187F|TRIML2_uc003izk.1_Missense_Mutation_p.S167F|TRIML2_uc011cle.1_Missense_Mutation_p.S434F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	359	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GATACAGAGGGAAAACACAGG	0.473													6	106					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068217	189068217	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:189068217G>A	uc003izm.1	+	6	1213	c.1098G>A	c.(1096-1098)GGG>GGA	p.G366G	TRIML1_uc003izn.1_Silent_p.G90G	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	366	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCAGAAAGGGGAATCTCCCCA	0.527													6	79					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1443229	1443229	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:1443229C>T	uc003jck.2	-	2	205	c.84G>A	c.(82-84)GAG>GAA	p.E28E		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	28	Cytoplasmic (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	TGAGCTCCACCTCCTTCGGGC	0.632													4	67					0	0	1	0	0
C5orf38	153571	broad.mit.edu	37	5	2753450	2753450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:2753450C>T	uc003jdc.2	+	3	502	c.385C>T	c.(385-387)CCT>TCT	p.P129S	C5orf38_uc011cmg.1_Missense_Mutation_p.P129S|C5orf38_uc011cmh.1_RNA|C5orf38_uc011cmi.1_RNA|C5orf38_uc011cmj.1_Intron	NM_178569	NP_848664	Q86SI9	CEI_HUMAN	hypothetical protein LOC153571 precursor	129						extracellular region					0				GBM - Glioblastoma multiforme(108;0.205)		GATGGCTCCTCCTGAGCCGGC	0.647													12	145					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5232490	5232490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:5232490G>A	uc003jdl.2	+	12	1849	c.1711G>A	c.(1711-1713)GGA>AGA	p.G571R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G571R|ADAMTS16_uc010itk.1_5'Flank	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	571	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GTGGTGCCGGGGAGGACAGTG	0.517													8	87					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5465073	5465073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:5465073C>T	uc003jdm.3	+	13	5848	c.5626C>T	c.(5626-5628)CCT>TCT	p.P1876S		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1876										ovary(1)|central_nervous_system(1)	2						AGGGAACCTCCCTCCAGCTGA	0.502													5	20					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9066595	9066595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:9066595C>T	uc003jek.2	-	17	2949	c.2237G>A	c.(2236-2238)GGA>GAA	p.G746E		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	746	TSP type-1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TCTCTGTCTTCCCACTTCCAG	0.542													12	192					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13776635	13776635	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13776635G>A	uc003jfd.2	-	55	9328	c.9286C>T	c.(9286-9288)CGA>TGA	p.R3096*		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3096	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTCTGTTTCGAAATTTCTCC	0.483									Kartagener_syndrome				6	59					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13786343	13786343	+	Missense_Mutation	SNP	C	T	T	rs148539877	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13786343C>T	uc003jfd.2	-	52	8807	c.8765G>A	c.(8764-8766)CGT>CAT	p.R2922H		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2922	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCGGCGCCACGGATGCTCTC	0.458									Kartagener_syndrome				3	30					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13788855	13788856	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13788855_13788856CC>AT	uc003jfd.2	-	51	8658_8659	c.8616_8617GG>AT	c.(8614-8619)GTGGAT>GTATAT	p.D2873Y		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2873					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCAAGAAATCCACAAAATATG	0.401									Kartagener_syndrome				13	103					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830773	13830773	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13830773C>T	uc003jfd.2	-	36	6036	c.5994G>A	c.(5992-5994)GGG>GGA	p.G1998G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1998	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGACGTATTTCCCGAGGCATC	0.488									Kartagener_syndrome				5	67					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13841810	13841810	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13841810G>A	uc003jfd.2	-	33	5517	c.5475C>T	c.(5473-5475)TTC>TTT	p.F1825F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1825	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTGAGCAGGGAAGGATGAAA	0.269									Kartagener_syndrome				3	49					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13862707	13862707	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13862707G>A	uc003jfd.2	-	29	4788	c.4746C>T	c.(4744-4746)ATC>ATT	p.I1582I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1582	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCATGTTGGCGATGATTTCCG	0.453									Kartagener_syndrome				4	70					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13871769	13871769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:13871769C>T	uc003jfd.2	-	23	3544	c.3502G>A	c.(3502-3504)GAA>AAA	p.E1168K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1168	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACTCAAATTCAGAAAGCAAG	0.403									Kartagener_syndrome				3	41					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14336794	14336794	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:14336794C>T	uc003jff.2	+	11	2010	c.2004C>T	c.(2002-2004)ATC>ATT	p.I668I	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.I619I|TRIO_uc003jfh.1_Silent_p.I317I	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	668					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AGCGAAAGATCCTACTGGACA	0.483													8	60					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14497966	14497966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:14497966C>T	uc003jff.2	+	51	8036	c.8030C>T	c.(8029-8031)CCC>CTC	p.P2677L	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2677					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CTTCTCAATCCCAACTACATT	0.403													19	327					0	0	1	0	0
MYO10	4651	broad.mit.edu	37	5	16675184	16675184	+	Missense_Mutation	SNP	G	A	A	rs142031622	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:16675184G>A	uc003jft.3	-	35	5210	c.4742C>T	c.(4741-4743)TCC>TTC	p.S1581F	MYO10_uc011cnb.1_Missense_Mutation_p.S210F|MYO10_uc011cnc.1_Missense_Mutation_p.S460F|MYO10_uc011cnd.1_Missense_Mutation_p.S938F|MYO10_uc011cne.1_Missense_Mutation_p.S938F|MYO10_uc010itx.2_Missense_Mutation_p.S1203F	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1581	MyTH4.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						GTCAGACATGGACTCCAGTTG	0.502													3	44					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	22078591	22078591	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:22078591T>C	uc010iuc.2	-	2	653	c.195A>G	c.(193-195)GAA>GAG	p.E65E	CDH12_uc011cno.1_Silent_p.E65E|CDH12_uc003jgk.2_Silent_p.E65E	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	65	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CCACGTATTCTTCCAGCACAA	0.448										HNSCC(59;0.17)			4	62					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23509621	23509621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:23509621G>A	uc003jgo.2	+	3	294	c.112G>A	c.(112-114)GAA>AAA	p.E38K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	38	KRAB-related.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTTCACCAAGGAAGAATGGGC	0.418										HNSCC(3;0.000094)			20	183					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23522420	23522420	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:23522420G>A	uc003jgo.2	+	7	698	c.516G>A	c.(514-516)AGG>AGA	p.R172R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	172					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TAGAACTCAGGAAGAAGGAGA	0.428										HNSCC(3;0.000094)			20	127					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527682	23527682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:23527682G>A	uc003jgo.2	+	11	2667	c.2485G>A	c.(2485-2487)GAG>AAG	p.E829K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	829					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACACAGGGGAGAAGCCCTA	0.582										HNSCC(3;0.000094)			7	122					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	28927365	28927365	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:28927365G>A	uc003jgz.1	+	1		c.389G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		CAGTTAATGTGAAAACAAGGT	0.448													5	115					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31323023	31323023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:31323023G>A	uc003jhe.1	+	12	2307	c.1981G>A	c.(1981-1983)GAC>AAC	p.D661N		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	661	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CAGTTACAACGACGAAGGTGG	0.488													5	61					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32090919	32090919	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:32090919G>A	uc003jhl.2	+	20	7753	c.7365G>A	c.(7363-7365)ACG>ACA	p.T2455T	PDZD2_uc003jhm.2_Silent_p.T2455T	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2455					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCACCCCAACGATGACCCTGG	0.567													13	96					0	0	1	0	0
ZFR	51663	broad.mit.edu	37	5	32397417	32397417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:32397417G>A	uc003jhr.1	-	10	1821	c.1741C>T	c.(1741-1743)CGG>TGG	p.R581W	MIR579_hsa-mir-579|MI0003586_5'Flank	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	581					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		CAATGGAACCGAATTACTTTT	0.343													6	53					0	0	1	0	0
NPR3	4883	broad.mit.edu	37	5	32712438	32712438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:32712438G>A	uc003jhv.2	+	1	774	c.556G>A	c.(556-558)GAG>AAG	p.E186K	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Missense_Mutation_p.E186K	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	186	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	CAAGATGGGCGAGATGATGCT	0.667													5	47					0	0	1	0	0
NPR3	4883	broad.mit.edu	37	5	32739085	32739085	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:32739085C>T	uc003jhv.2	+	3	1226	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	NPR3_uc010iuo.2_Silent_p.S120S|NPR3_uc011cnz.1_Silent_p.S120S|NPR3_uc003jhu.2_Silent_p.S336S	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	336	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGAAGTTTTCCATGGAGGTGA	0.443													8	73					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35014170	35014170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35014170C>T	uc003jjf.2	-	10	1097	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	AGXT2_uc003jje.1_5'UTR|AGXT2_uc011com.1_Intron	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	340					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GGCAGGACATCGTGGGTTTGG	0.502													9	62					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065841	35065841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35065841G>A	uc003jjm.2	-	10	1749	c.1219C>T	c.(1219-1221)CAT>TAT	p.H407Y	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.H306Y	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	407	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CCACCAGCATGAAAATAGGGG	0.493													17	203					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35072785	35072785	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35072785G>A	uc003jjm.2	-	6	965	c.435C>T	c.(433-435)CCC>CCT	p.P145P	PRLR_uc003jjg.1_Silent_p.P145P|PRLR_uc003jjh.1_Silent_p.P145P|PRLR_uc003jji.1_Silent_p.P74P|PRLR_uc003jjj.1_Silent_p.P145P|PRLR_uc003jjk.1_Silent_p.P74P|PRLR_uc003jjl.3_Silent_p.P44P|PRLR_uc010iuw.1_Silent_p.P74P	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	145	Fibronectin type-III 2.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCCACAGGTAGGGTTTTCTGT	0.458													9	73					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35654684	35654684	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35654684C>T	uc003jjo.2	+	7	945	c.834C>T	c.(832-834)ACC>ACT	p.T278T	SPEF2_uc003jjn.1_Silent_p.T278T|SPEF2_uc003jjq.3_Silent_p.T278T	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	278					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGACAACCACCGATTTGTTAA	0.358													7	56					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35691242	35691242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35691242C>T	uc003jjo.2	+	11	1739	c.1628C>T	c.(1627-1629)TCT>TTT	p.S543F	SPEF2_uc003jjq.3_Missense_Mutation_p.S543F|SPEF2_uc003jjp.1_Missense_Mutation_p.S34F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	543					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCTGAAAAATCTCTTCCTCCT	0.413													7	108					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35727789	35727789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35727789G>A	uc003jjo.2	+	21	3038	c.2927G>A	c.(2926-2928)GGA>GAA	p.G976E	SPEF2_uc003jjp.1_Missense_Mutation_p.G462E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	976					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCTCCTAAAGGAAAATCATCA	0.383													4	64					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35763653	35763653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35763653C>T	uc003jjo.2	+	26	3761	c.3650C>T	c.(3649-3651)TCT>TTT	p.S1217F	SPEF2_uc003jjp.1_Missense_Mutation_p.S703F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1217					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATATCCATTTCTCTGGAAACA	0.358													3	46					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35857113	35857113	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:35857113T>A	uc003jjs.2	+	1	123	c.34T>A	c.(34-36)TTT>ATT	p.F12I	IL7R_uc011coo.1_Missense_Mutation_p.F12I|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	12					immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TGGCATGGTTTTTTCTTTACT	0.239													12	93					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039616	36039616	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:36039616C>T	uc003jjz.1	-	5	1131	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V	UGT3A2_uc011cos.1_Silent_p.V312V|UGT3A2_uc011cot.1_Silent_p.V44V	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	346	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCACAATTTTCACATTTGCAG	0.532													11	119					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36064363	36064363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:36064363G>A	uc003jjz.1	-	2	277	c.184C>T	c.(184-186)CCT>TCT	p.P62S	UGT3A2_uc011cos.1_Intron|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	62	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGCATAAAAGGACCTCTTTTG	0.393													4	58					0	0	1	0	0
LMBRD2	92255	broad.mit.edu	37	5	36116684	36116684	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:36116684G>A	uc003jkb.1	-	11	1729	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	438	Helical; (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGATGGAAAGGAAGCAGGCAA	0.328													3	40					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38448420	38448420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:38448420G>A	uc003jlc.1	+	19	2830	c.2506G>A	c.(2506-2508)GAG>AAG	p.E836K	EGFLAM_uc003jlb.1_Missense_Mutation_p.E828K|EGFLAM_uc003jle.1_Missense_Mutation_p.E594K|EGFLAM_uc003jlf.1_Missense_Mutation_p.E194K|EGFLAM_uc003jlg.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	836	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					AGAAGCCATTGAGATCCCGCA	0.483													20	212					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38510699	38510699	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:38510699G>A	uc010ive.1	-	7	1190	c.858C>T	c.(856-858)AAC>AAT	p.N286N	LIFR_uc003jli.2_Silent_p.N286N	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	286	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TCAAGGGGCAGTTTGTATGGC	0.373			T	PLAG1	salivary adenoma								4	49					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38530721	38530721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:38530721C>T	uc010ive.1	-	2	361	c.29G>A	c.(28-30)CGA>CAA	p.R10Q	LIFR_uc003jli.2_Missense_Mutation_p.R10Q	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	10					positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CCAGGATGGTCGTTTCAAACA	0.388			T	PLAG1	salivary adenoma								9	98					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38886289	38886289	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:38886289C>T	uc003jln.1	+	7	1355	c.988C>T	c.(988-990)CGA>TGA	p.R330*	OSMR_uc003jlm.1_Nonsense_Mutation_p.R330*	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	330	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CCTGACTCATCGAGGTGAGAC	0.408													4	72					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40958352	40958352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:40958352G>A	uc003jmh.2	+	11	1592	c.1478G>A	c.(1477-1479)GGG>GAG	p.G493E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	493					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTCCTCGTAGGGAATCAAGCA	0.488													4	49					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41160458	41160458	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:41160458G>A	uc003jmk.2	-	11	1680	c.1470C>T	c.(1468-1470)ATC>ATT	p.I490I	C6_uc003jml.1_Silent_p.I490I	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	490	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CCAAGTCCACGATGGGGGCAA	0.498													6	52					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42695149	42695149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:42695149G>A	uc003jmt.2	+	5	440	c.397G>A	c.(397-399)GGT>AGT	p.G133S	GHR_uc011cpq.1_5'UTR	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	133	Extracellular (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AACTAGCAATGGTGGTACAGT	0.363													7	43					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42718559	42718559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:42718559G>A	uc003jmt.2	+	10	993	c.950G>A	c.(949-951)GGA>GAA	p.G317E	GHR_uc011cpq.1_Missense_Mutation_p.G130E	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	317	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TTCTAGGAAGGAAAATTAGAG	0.299													8	129					0	0	1	0	0
MGC42105	167359	broad.mit.edu	37	5	43277234	43277234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:43277234C>T	uc003jno.2	+	3	1249	c.368C>T	c.(367-369)TCC>TTC	p.S123F		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	123	Protein kinase.						ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						CGAGAAATCTCCAGCATGGAA	0.483													3	59					0	0	1	0	0
C5orf34	375444	broad.mit.edu	37	5	43508741	43508741	+	Nonsense_Mutation	SNP	G	A	A	rs143336043		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:43508741G>A	uc003jnz.1	-	4	540	c.223C>T	c.(223-225)CGA>TGA	p.R75*	C5orf34_uc011cpx.1_5'UTR	NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	75										breast(1)	1	Lung NSC(6;2.07e-05)					GAAGAGTTTCGAAAATCTAGG	0.289													5	76					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49699225	49699225	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:49699225G>A	uc003jom.2	-	6	913	c.664C>T	c.(664-666)CTG>TTG	p.L222L	EMB_uc010ivq.2_Silent_p.L16L|EMB_uc003jol.2_Silent_p.L153L|EMB_uc011cpy.1_Silent_p.L172L|EMB_uc010ivr.2_Silent_p.L168L	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	222	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GTTATCTTCAGCTTTGTTTCG	0.388													3	38					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52145262	52145262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:52145262C>T	uc003jou.2	+	2	177	c.125C>T	c.(124-126)CCG>CTG	p.P42L	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	42	Extracellular (Potential).|FG-GAP 1.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TTCAGCGGCCCGGTGGAAGAC	0.353													3	45					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52240815	52240815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:52240815C>T	uc003jou.2	+	27	3380	c.3328C>T	c.(3328-3330)CGG>TGG	p.R1110W	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.R641W	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	1110	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				GGGAGAACTTCGGAGTGAAAA	0.323													8	199					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52360782	52360782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:52360782G>A	uc003joy.2	+	14	1786	c.1643G>A	c.(1642-1644)GGC>GAC	p.G548D	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.G472D|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	548	Extracellular (Potential).|FG-GAP 6.				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				GGCCCCGAGGGCATTGAAAAC	0.398													9	74					0	0	1	0	0
FST	10468	broad.mit.edu	37	5	52779399	52779399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:52779399C>T	uc003jpd.2	+	3	370	c.343C>T	c.(343-345)CGC>TGC	p.R115C	FST_uc003jpc.2_Missense_Mutation_p.R115C	NM_013409	NP_037541	P19883	FST_HUMAN	follistatin isoform FST344 precursor	115	Follistatin-like 1.|Kazal-like 1.				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of follicle-stimulating hormone secretion|negative regulation of transcription from RNA polymerase II promoter|positive regulation of hair follicle development	extracellular region	activin binding|protein binding|signal transducer activity				0		Ovarian(174;1.78e-06)|Lung NSC(810;3.55e-06)|Breast(144;4.08e-05)				GAACAAACCCCGCTGCGTCTG	0.512													7	71					0	0	1	0	0
ANKRD55	79722	broad.mit.edu	37	5	55398347	55398347	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:55398347T>C	uc003jqu.2	-	11	1849	c.1697A>G	c.(1696-1698)AAC>AGC	p.N566S	ANKRD55_uc003jqt.2_Missense_Mutation_p.N278S	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	565										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GGGAGCTAGGTTGTTCCGAGT	0.373													3	60					0	0	1	0	0
FLJ37543	285668	broad.mit.edu	37	5	60982870	60982870	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:60982870G>A	uc003jst.1	+	3	273	c.198G>A	c.(196-198)TCG>TCA	p.S66S	uc003jsu.1_Intron|uc010iwo.1_Intron|uc003jsv.2_Intron	NM_173667	NP_775938	Q2M2E5	CE064_HUMAN	hypothetical protein LOC285668 precursor	66						extracellular region					0		Lung NSC(810;0.000468)|Prostate(74;0.0283)|Breast(144;0.237)				CAATCAAATCGAGATCACATC	0.418													4	64					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256911	63256911	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:63256911C>T	uc011cqt.1	-	1	636	c.636G>A	c.(634-636)CTG>CTA	p.L212L		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	212	Helical; Name=5; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CATAGAGAACCAGCATGAGCA	0.567													13	216					0	0	1	0	0
C5orf44	80006	broad.mit.edu	37	5	64957927	64957927	+	Silent	SNP	C	T	T	rs150042544	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:64957927C>T	uc003jtz.3	+	11	1278	c.948C>T	c.(946-948)ACC>ACT	p.T316T	C5orf44_uc003jua.3_Silent_p.T316T|C5orf44_uc003juc.3_Silent_p.T310T|C5orf44_uc010iwv.2_Silent_p.T310T	NM_024941	NP_079217	A5PLN9	CE044_HUMAN	hypothetical protein LOC80006 isoform 2	316										ovary(1)	1						TACCAGATACCGTAAACCTTG	0.393													3	46					0	0	1	0	0
CCDC125	202243	broad.mit.edu	37	5	68616180	68616181	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:68616180_68616181GG>AA	uc003jvv.1	-	1	230_231	c.187_188CC>TT	c.(187-189)CCG>TTG	p.P63L	CCDC125_uc003jvx.1_Missense_Mutation_p.P63L|CCDC125_uc003jvy.1_Intron|CCDC125_uc003jvw.2_Intron|CCDC125_uc003jvz.1_Missense_Mutation_p.P63L	NM_176816	NP_789786	Q86Z20	CC125_HUMAN	coiled-coil domain containing 125	63						cytoplasm					0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.2e-56)|Epithelial(20;2.31e-52)|all cancers(19;5.85e-48)|Lung(70;0.0183)		TCCCTTTCTCGGAAATGGAGGA	0.406													10	95					0	0	1	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715330	68715330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:68715330G>A	uc003jwq.2	+	2	177	c.118G>A	c.(118-120)GCA>ACA	p.A40T	MARVELD2_uc010ixf.2_Missense_Mutation_p.A40T|MARVELD2_uc003jwr.1_Missense_Mutation_p.A40T|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	40	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		CAGTGAGCGGGCAGTGAGCGC	0.562													9	88					0	0	1	0	0
BDP1	55814	broad.mit.edu	37	5	70858292	70858292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:70858292C>T	uc003kbp.1	+	38	7951	c.7688C>T	c.(7687-7689)CCA>CTA	p.P2563L	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2563					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GATCTGCTTCCATCTCCAAGT	0.363													9	72					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71752379	71752379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:71752379G>A	uc003kce.1	-	3	1562	c.1376C>T	c.(1375-1377)ACC>ATC	p.T459I		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	459	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGCCAGCAGGGTGAACTCCCG	0.537													25	221					0	0	1	0	0
TMEM174	134288	broad.mit.edu	37	5	72469289	72469289	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:72469289C>T	uc010izc.2	+	1	267	c.219C>T	c.(217-219)CTC>CTT	p.L73L		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	73	Helical; (Potential).					integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		GGACCCAGCTCCTTGGGCCCG	0.507													13	63					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73072345	73072345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:73072345C>T	uc011csq.1	+	5	675	c.664C>T	c.(664-666)CAG>TAG	p.Q222*	RGNEF_uc003kcx.2_Nonsense_Mutation_p.Q222*|RGNEF_uc003kcy.1_Nonsense_Mutation_p.Q222*|RGNEF_uc010izf.2_Nonsense_Mutation_p.Q222*	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	222					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TTTCAGTTTTCAGGGCAGATG	0.512													3	34					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73072419	73072419	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:73072419G>A	uc011csq.1	+	5	749	c.738G>A	c.(736-738)TCG>TCA	p.S246S	RGNEF_uc003kcx.2_Silent_p.S246S|RGNEF_uc003kcy.1_Silent_p.S246S|RGNEF_uc010izf.2_Silent_p.S246S	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	246					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TTCACTCATCGGAAACGCTGA	0.473													7	161					0	0	1	0	0
FAM169A	26049	broad.mit.edu	37	5	74109758	74109758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:74109758C>T	uc003kdm.2	-	6	620	c.577G>A	c.(577-579)GAT>AAT	p.D193N	FAM169A_uc010izm.2_Intron|FAM169A_uc003kdl.2_Missense_Mutation_p.D11N	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	193											0						AGCCCAAAATCTTTACCTCTG	0.398													7	79					0	0	1	0	0
GCNT4	51301	broad.mit.edu	37	5	74324860	74324860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:74324860C>T	uc003kdn.2	-	1	1865	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	335	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		AAGTGCTCATCAGGAGAGTAT	0.423													5	55					0	0	1	0	0
GCNT4	51301	broad.mit.edu	37	5	74325058	74325058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:74325058G>A	uc003kdn.2	-	1	1667	c.805C>T	c.(805-807)CAT>TAT	p.H269Y		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	269	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		CTAAGTTCATGATGGTAAGTG	0.398													8	133					0	0	1	0	0
GCNT4	51301	broad.mit.edu	37	5	74325203	74325203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:74325203C>T	uc003kdn.2	-	1	1522	c.660G>A	c.(658-660)TGG>TGA	p.W220*		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	220	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		TAACATATTTCCACTGGATTG	0.398													8	95					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75505590	75505590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:75505590C>T	uc003kei.1	+	4	925	c.791C>T	c.(790-792)TCG>TTG	p.S264L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	264	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		ACTGTGTTCTCGTACTTTGCT	0.557													6	100					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75597323	75597323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:75597323G>A	uc003kei.1	+	12	2087	c.1953G>A	c.(1951-1953)TGG>TGA	p.W651*		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	651	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TCTCAGCCTGGAACTCTCTTG	0.507													24	189					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75961000	75961000	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:75961000G>A	uc003kek.2	+	22	2901	c.2679G>A	c.(2677-2679)CAG>CAA	p.Q893Q	IQGAP2_uc010izv.2_Silent_p.Q446Q|IQGAP2_uc011csv.1_Silent_p.Q389Q|IQGAP2_uc003kel.2_Silent_p.Q389Q	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	893					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		ACCTTTTACAGGTGAGAACAA	0.353													3	84					0	0	1	0	0
LOC441089	441089	broad.mit.edu	37	5	79647607	79647607	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:79647607G>A	uc010jaj.1	-	1		c.179C>T				NR_003665				Homo sapiens CRSP8 pseudogene (LOC441089), non-coding RNA.												0						AAGTTGTCCTGGAAGTGCGCA	0.562													6	159					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80419547	80419547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:80419547C>T	uc003kha.1	+	16	2557	c.2557C>T	c.(2557-2559)CCC>TCC	p.P853S	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	853					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TTGCAGATCCCCCTCAACTCC	0.527													4	65					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80476056	80476056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:80476056C>T	uc003kha.1	+	18	2749	c.2749C>T	c.(2749-2751)CGA>TGA	p.R917*	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	917					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		GGCTACCAATCGAGTTCTGAA	0.398													15	132					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89938673	89938673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:89938673G>A	uc003kju.2	+	13	2464	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	790	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTTTTTAAAGGAAGGAGAATC	0.373													7	78					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89990047	89990047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:89990047C>T	uc003kju.2	+	33	7570	c.7474C>T	c.(7474-7476)CTT>TTT	p.L2492F	GPR98_uc003kjt.2_Missense_Mutation_p.L198F|GPR98_uc003kjv.2_Missense_Mutation_p.L92F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2492	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGTAGCATCTCTTTTTAGTGG	0.493													7	39					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89992930	89992930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:89992930C>T	uc003kju.2	+	34	8218	c.8122C>T	c.(8122-8124)CAG>TAG	p.Q2708*	GPR98_uc003kjt.2_Nonsense_Mutation_p.Q414*|GPR98_uc003kjv.2_Nonsense_Mutation_p.Q308*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2708	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGTTAGCTTTCAGACAGCTTC	0.393													4	110					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90072360	90072360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:90072360C>T	uc003kju.2	+	61	12590	c.12494C>T	c.(12493-12495)CCC>CTC	p.P4165L	GPR98_uc003kjt.2_Missense_Mutation_p.P1871L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4165	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTGGGGAACCCTCAGCAAAA	0.393													4	48					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90136455	90136455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:90136455G>A	uc003kju.2	+	78	16768	c.16672G>A	c.(16672-16674)GAT>AAT	p.D5558N	GPR98_uc003kjt.2_Missense_Mutation_p.D3264N|GPR98_uc003kjw.2_Missense_Mutation_p.D1219N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5558	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCTGGAAAGGATTTTGTGAT	0.398													12	67					0	0	1	0	0
NR2F1	7025	broad.mit.edu	37	5	92923970	92923970	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:92923970C>T	uc003kkj.2	+	2	2498	c.811C>T	c.(811-813)CTG>TTG	p.L271L		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	271					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		CTCTATGCCGCTGCACGTGGC	0.667													9	63					0	0	1	0	0
ELL2	22936	broad.mit.edu	37	5	95234462	95234462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:95234462C>T	uc003klr.3	-	8	1357	c.1007G>A	c.(1006-1008)CGA>CAA	p.R336Q		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	336					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		GTGAGATATTCGGGCTTTTTT	0.448													13	208					0	0	1	0	0
CHD1	1105	broad.mit.edu	37	5	98192094	98192094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:98192094C>T	uc003knf.2	-	35	5271	c.5123G>A	c.(5122-5124)CGG>CAG	p.R1708Q	CHD1_uc010jbn.2_Missense_Mutation_p.R434Q	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1708					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	TTATGTTTTCCGACTACTCCA	0.388													3	69					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101574973	101574973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:101574973G>A	uc003knm.2	-	12	2283	c.1996C>T	c.(1996-1998)CAT>TAT	p.H666Y		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	666	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		ACTAGCATATGGGCCATCTTG	0.323													3	28					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101631927	101631927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:101631927G>A	uc003knm.2	-	1	327	c.40C>T	c.(40-42)CCC>TCC	p.P14S		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	14	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GGGCTGGAGGGGACAAAAGCC	0.577													5	35					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110730439	110730439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:110730439G>A	uc011cvj.1	+	6	517	c.418G>A	c.(418-420)GAT>AAT	p.D140N	CAMK4_uc003kpf.2_Missense_Mutation_p.D140N|CAMK4_uc010jbv.2_5'UTR	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	140	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		CAGTGAGCGAGATGCTGCAGA	0.388													4	56					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110809049	110809049	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:110809049G>A	uc011cvj.1	+	9	765	c.666G>A	c.(664-666)GTG>GTA	p.V222V	CAMK4_uc003kpf.2_Silent_p.V222V|CAMK4_uc010jbv.2_Silent_p.V25V	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	222	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		GACCTGAGGTGGACATGTGGT	0.333													10	84					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111540173	111540173	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:111540173A>G	uc003kpv.1	-	15	1549	c.1275T>C	c.(1273-1275)AAT>AAC	p.N425N	EPB41L4A_uc003kpp.1_Silent_p.N52N	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	425						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CACTGGGAGAATTGTAGAGTC	0.507													6	78					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111576445	111576445	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:111576445C>T	uc003kpv.1	-	10	1132	c.858G>A	c.(856-858)AAG>AAA	p.K286K		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	286	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CCACACTGCACTTCCAGAGGT	0.308													5	52					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112175434	112175435	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:112175434_112175435AC>TT	uc010jby.2	+	16	4523_4524	c.4143_4144AC>TT	c.(4141-4146)CCACTC>CCTTTC	p.L1382F	APC_uc011cvt.1_Missense_Mutation_p.L1364F|APC_uc003kpz.3_Missense_Mutation_p.L1382F|APC_uc003kpy.3_Missense_Mutation_p.L1382F|APC_uc010jbz.2_Missense_Mutation_p.L1099F|APC_uc010jca.2_Missense_Mutation_p.L682F	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1382	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.L1382fs*4(2)|p.Y1376fs*41(1)|p.K1192fs*3(1)|p.?(1)|p.L1382fs*33(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AGGAGACCCCACTCATGTTTAG	0.465		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			4	66					0	0	1	0	0
DCP2	167227	broad.mit.edu	37	5	112327826	112327826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:112327826C>T	uc003kqh.2	+	3	412	c.214C>T	c.(214-216)CAT>TAT	p.H72Y	DCP2_uc011cwa.1_Intron|DCP2_uc010jcc.2_5'UTR	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	72					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		ACTCTTCAGTCATTGTCCGTT	0.333													9	132					0	0	1	0	0
TRIM36	55521	broad.mit.edu	37	5	114466465	114466465	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:114466465G>A	uc003kqs.2	-	9	2165	c.1656C>T	c.(1654-1656)ATC>ATT	p.I552I	TRIM36_uc011cwc.1_Silent_p.I540I|TRIM36_uc003kqt.2_Silent_p.I397I	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	552	B30.2/SPRY.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		AACCCACTTGGATGCGTTCTG	0.423													5	145					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115335595	115335595	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:115335595G>C	uc003kro.2	+	7	1675	c.1511G>C	c.(1510-1512)AGC>ACC	p.S504T	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	504	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TTTACTTACAGCAAGGTAAAA	0.373													3	80					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118970044	118970044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:118970044G>A	uc003ksm.2	+	3	811	c.601G>A	c.(601-603)GAC>AAC	p.D201N	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.D201N|FAM170A_uc003kso.2_Missense_Mutation_p.D154N	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	201						intracellular	zinc ion binding			skin(1)	1						GACAGAATCAGACAGCCTGCC	0.587													5	98					0	0	1	0	0
PRR16	51334	broad.mit.edu	37	5	120022114	120022114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:120022114G>A	uc003ksq.2	+	2	788	c.625G>A	c.(625-627)GAA>AAA	p.E209K	PRR16_uc003ksp.2_Missense_Mutation_p.E186K|PRR16_uc003ksr.2_Missense_Mutation_p.E139K	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	209	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		TCGGTTTAATGAAAAAGTACA	0.488													5	38					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121787121	121787121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:121787121C>T	uc003ksw.1	+	10	2785	c.2579C>T	c.(2578-2580)CCT>CTT	p.P860L	SNCAIP_uc011cwl.1_Missense_Mutation_p.P418L|SNCAIP_uc003ksx.1_Missense_Mutation_p.P907L|SNCAIP_uc003ksy.1_Missense_Mutation_p.P494L|SNCAIP_uc003ksz.1_Missense_Mutation_p.P494L|SNCAIP_uc010jcu.2_Missense_Mutation_p.P456L|SNCAIP_uc011cwm.1_Missense_Mutation_p.P494L|SNCAIP_uc003kta.1_Missense_Mutation_p.P492L|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.P554L|SNCAIP_uc010jcx.1_Missense_Mutation_p.P800L|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.P376L	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	860					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CTGAAAAGGCCTTTTGGAGCC	0.468													7	83					0	0	1	0	0
LMNB1	4001	broad.mit.edu	37	5	126161727	126161727	+	Silent	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:126161727C>A	uc003kud.1	+	9	1907	c.1539C>A	c.(1537-1539)CTC>CTA	p.L513L	LMNB1_uc010jdb.1_RNA|LMNB1_uc011cxb.1_Silent_p.L303L	NM_005573	NP_005564	P20700	LMNB1_HUMAN	lamin B1	513	Tail.				cellular component disassembly involved in apoptosis	lamin filament|nuclear inner membrane	protein binding|structural molecule activity			kidney(1)|central_nervous_system(1)	2		all_cancers(142;0.103)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.033)|OV - Ovarian serous cystadenocarcinoma(64;0.0398)|all cancers(49;0.0903)		CAACTGACCTCATCTGGAAGA	0.507													5	43					0.014758	0.0148129	1	1	0
FBN2	2201	broad.mit.edu	37	5	127645737	127645737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:127645737C>T	uc003kuu.2	-	40	5577	c.5138G>A	c.(5137-5139)GGA>GAA	p.G1713E		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1713	EGF-like 28; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGTGTAATTTCCCAGGGTGTT	0.433													4	88					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128862045	128862045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:128862045C>T	uc003kvb.1	+	4	964	c.964C>T	c.(964-966)CCT>TCT	p.P322S	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	322					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ATACAAATTACCTCAAGAATA	0.393													3	40					0	0	1	0	0
SEPT8	23176	broad.mit.edu	37	5	132096504	132096504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:132096504C>T	uc003kxr.2	-	9	1514	c.1276G>A	c.(1276-1278)GAC>AAC	p.D426N	SEPT8_uc003kxs.1_Missense_Mutation_p.D426N|SEPT8_uc003kxu.2_Missense_Mutation_p.D426N|SEPT8_uc011cxi.1_Missense_Mutation_p.D424N|SEPT8_uc003kxv.2_Missense_Mutation_p.D424N|SEPT8_uc003kxt.2_Missense_Mutation_p.D366N	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	426					cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTCTTCTTGTCCTTGTCCTTC	0.632													4	90					0	0	1	0	0
TIFAB	497189	broad.mit.edu	37	5	134785536	134785536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:134785536C>T	uc003law.3	-	2	295	c.94G>A	c.(94-96)GAT>AAT	p.D32N	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	32											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGGCTGGTATCATGCTGCAGC	0.652													11	101					0	0	1	0	0
LOC153328	153328	broad.mit.edu	37	5	135188435	135188435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:135188435G>A	uc003laz.1	+	4	518	c.346G>A	c.(346-348)GTC>ATC	p.V116I	LOC153328_uc003lba.2_Missense_Mutation_p.V116I			Q6ZT89	S2548_HUMAN	RecName: Full=Putative mitochondrial carrier protein FLJ44862;	116	Helical; Name=3; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGCCGGCGTGGTCTCTGTCGG	0.677													3	41					0	0	1	0	0
IL9	3578	broad.mit.edu	37	5	135231462	135231462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:135231462G>A	uc003lbb.1	-	1	55	c.44C>T	c.(43-45)TCC>TTC	p.S15F		NM_000590	NP_000581	P15248	IL9_HUMAN	interleukin 9 precursor	15					immune response|inflammatory response|positive regulation of cell proliferation|positive regulation of interleukin-5 biosynthetic process	extracellular space	cytokine activity|cytokine receptor binding|growth factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCCTGCCACGGAGCACAGGAG	0.567													4	72					0	0	1	0	0
REEP2	51308	broad.mit.edu	37	5	137780107	137780107	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:137780107C>T	uc003lcz.2	+	4	308	c.186C>T	c.(184-186)TTC>TTT	p.F62F	REEP2_uc003lda.2_Silent_p.F62F|REEP2_uc011cyt.1_Silent_p.F23F	NM_016606	NP_057690	Q9BRK0	REEP2_HUMAN	receptor accessory protein 2	62						integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CCAACAGGTTCCCCTTCTACT	0.612													7	122					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166533	140166533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140166533C>T	uc003lhb.2	+	1	658	c.658C>T	c.(658-660)CCG>TCG	p.P220S	PCDHA1_uc003lha.2_Missense_Mutation_p.P220S|PCDHA1_uc003lgz.2_Missense_Mutation_p.P220S	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	220	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGGGCAAACCGGAGCTGCA	0.453													4	117					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167623	140167623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140167623G>A	uc003lhb.2	+	1	1748	c.1748G>A	c.(1747-1749)CGA>CAA	p.R583Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Missense_Mutation_p.R583Q	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	583	Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGTGCCGCGATTGGTGGGT	0.662													12	123					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174807	140174807	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140174807G>A	uc003lhd.2	+	1	364	c.258G>A	c.(256-258)GTG>GTA	p.V86V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.V86V|PCDHA2_uc011czy.1_Silent_p.V86V	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	86	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTTGTTTGTGAATTCTCGGA	0.602													28	332					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176515	140176515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140176515G>A	uc003lhd.2	+	1	2072	c.1966G>A	c.(1966-1968)GAA>AAA	p.E656K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E656K|PCDHA2_uc011czy.1_Missense_Mutation_p.E656K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	656	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGGCGAACCAGCGTT	0.672													6	106					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201627	140201627	+	Silent	SNP	C	T	T	rs148967528	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140201627C>T	uc003lhl.2	+	1	267	c.267C>T	c.(265-267)ATC>ATT	p.I89I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.I89I|PCDHA5_uc003lhj.1_Silent_p.I89I	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	89	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGGGAGG	0.627													13	295					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202182	140202182	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140202182G>A	uc003lhl.2	+	1	822	c.822G>A	c.(820-822)AAG>AAA	p.K274K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.K274K|PCDHA5_uc003lhj.1_Silent_p.K274K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	274	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATCAATAAGGAAATAGTGT	0.328													4	60					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202854	140202854	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140202854G>A	uc003lhl.2	+	1	1494	c.1494G>A	c.(1492-1494)GTG>GTA	p.V498V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.V498V|PCDHA5_uc003lhj.1_Silent_p.V498V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	498	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGGCGGGTGGGCGAGCGCC	0.672													8	105					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203480	140203480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140203480C>T	uc003lhl.2	+	1	2120	c.2120C>T	c.(2119-2121)TCC>TTC	p.S707F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S707F|PCDHA5_uc003lhj.1_Missense_Mutation_p.S707F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	707	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGCGGTGTCCAGCCTGCTG	0.692													17	108					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140210016	140210016	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140210016T>C	uc003lho.2	+	1	2367	c.2340T>C	c.(2338-2340)CCT>CCC	p.P780P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.P780P	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	780	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTTGTCCTATTATGATGG	0.448													14	118					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222207	140222207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140222207C>T	uc003lhs.2	+	1	1301	c.1301C>T	c.(1300-1302)TCG>TTG	p.S434L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S434L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	434	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCGCCTTCGCTGTGGGCC	0.627													17	202					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222568	140222568	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140222568C>T	uc003lhs.2	+	1	1662	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.F554F	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	554	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTGTTCGTGCTGGACG	0.701													12	156					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222697	140222697	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140222697G>A	uc003lhs.2	+	1	1791	c.1791G>A	c.(1789-1791)GTG>GTA	p.V597V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.V597V	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	597	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCGCGCAGTGGACGCCGACT	0.692													7	110					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228535	140228535	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140228535T>A	uc003lhu.2	+	1	1179	c.455T>A	c.(454-456)TTT>TAT	p.F152Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.F152Y	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	152	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACTCTCGGTTTCCACTAGAG	0.552													7	67					0	0	1	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236607	140236607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140236607G>A	uc003lhx.2	+	1	974	c.974G>A	c.(973-975)GGA>GAA	p.G325E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.G325E|PCDHA10_uc011dad.1_Missense_Mutation_p.G325E	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	325	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAGATAAGGGAAACCCACCT	0.403													5	128					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140261919	140261919	+	Silent	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140261919A>C	uc003lif.2	+	1	66	c.66A>C	c.(64-66)GCA>GCC	p.A22A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.A22A|PCDHA13_uc003lid.2_Silent_p.A22A	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	22					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATCCTCGCAGCCTGGGAGA	0.602													7	241					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263050	140263050	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140263050C>T	uc003lif.2	+	1	1197	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.S399S|PCDHA13_uc003lid.2_Silent_p.S399S	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	399	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGGTGTCCACCTACAAGA	0.587													17	279					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308470	140308470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140308470C>T	uc003lih.2	+	1	2169	c.1993C>T	c.(1993-1995)CCA>TCA	p.P665S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.P665S	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	665	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGTTACTTCCAGACTTTGA	0.502													7	120					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347041	140347041	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140347041G>A	uc003lii.2	+	1	930	c.690G>A	c.(688-690)GTG>GTA	p.V230V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.V230V	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	230	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCACAGCCGTGGATGGGGGCA	0.597													8	82					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348599	140348599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140348599G>A	uc003lii.2	+	1	2488	c.2248G>A	c.(2248-2250)GAA>AAA	p.E750K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.E750K	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	750	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGTAAGGGAAAGGTCCCC	0.458													4	70					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475307	140475307	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140475307C>T	uc003lil.2	+	1	1071	c.933C>T	c.(931-933)TTC>TTT	p.F311F	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	311	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTGGATTTCGAATCCATCC	0.403													8	105					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475961	140475961	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140475961C>T	uc003lil.2	+	1	1725	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	PCDHB2_uc003lim.1_Silent_p.F190F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	529	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGCGTTCGAGTTCCGCG	0.701													11	97					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476711	140476711	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140476711G>A	uc003lil.2	+	1	2475	c.2337G>A	c.(2335-2337)CAG>CAA	p.Q779Q	PCDHB2_uc003lim.1_Silent_p.Q440Q	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	779	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCGTTGCTCAGGGTGCAGAGA	0.478													10	120					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480786	140480786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140480786C>T	uc003lio.2	+	1	553	c.553C>T	c.(553-555)CGT>TGT	p.R185C	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	185	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACTCGCAGTCGTAGGGACGG	0.542													14	98					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481048	140481049	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140481048_140481049GA>AG	uc003lio.2	+	1	815_816	c.815_816GA>AG	c.(814-816)GGA>GAG	p.G272E	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	272	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAGATACAGGAAGTTTTGGGA	0.406													10	108					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516442	140516442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140516442G>A	uc003liq.2	+	1	1643	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	476	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGCGCCACAGACAGAGACTC	0.637													22	264					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517365	140517365	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140517365G>A	uc003liq.2	+	1	2566	c.2349G>A	c.(2347-2349)GGG>GGA	p.G783G		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	783	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGAAATAGGGAAAACTGCTG	0.468													5	144					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553242	140553242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140553242G>A	uc003lit.2	+	1	1000	c.826G>A	c.(826-828)GAA>AAA	p.E276K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	276	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGTAATGGGGAAATAGCCTA	0.458													7	114					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553802	140553802	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140553802G>A	uc003lit.2	+	1	1560	c.1386G>A	c.(1384-1386)GAG>GAA	p.E462E		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	462	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTGTCCGTGAGAACAACAGCC	0.612													12	245					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554580	140554580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140554580C>T	uc003lit.2	+	1	2338	c.2164C>T	c.(2164-2166)CGC>TGC	p.R722C	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	722	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCGGTGGGTCGCTGCTCGGT	0.667													11	586					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558604	140558604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140558604G>A	uc011dai.1	+	1	1175	c.989G>A	c.(988-990)GGA>GAA	p.G330E	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	330	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTTTTCTGGAAAATGCACC	0.428													15	634					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589760	140589760	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140589760G>A	uc003liz.2	+	1	1470	c.1281G>A	c.(1279-1281)GGG>GGA	p.G427G	PCDHB12_uc011dak.1_Silent_p.G90G	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	427	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGACTTGGGGACCCCCAGGC	0.532													22	118					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590232	140590232	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140590232C>T	uc003liz.2	+	1	1942	c.1753C>T	c.(1753-1755)CTG>TTG	p.L585L	PCDHB12_uc011dak.1_Silent_p.L248L	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	585	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGGGCTACCTGGTGACCAA	0.697													22	349					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140596017	140596017	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140596017C>T	uc003lja.1	+	1	2509	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	774	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCAACTTCCCTCCCCAGT	0.478													10	108					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626095	140626095	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140626095C>A	uc003lje.2	+	1	949	c.949C>A	c.(949-951)CTA>ATA	p.L317I		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	317	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCGTATGATCTAGATATAGA	0.408													14	170					2.23348e-06	2.25243e-06	1	1	0
PCDHB15	56121	broad.mit.edu	37	5	140626638	140626638	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140626638C>T	uc003lje.2	+	1	1492	c.1492C>T	c.(1492-1494)CTG>TTG	p.L498L		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	498	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACCCGCACCTGCCCCTCAC	0.667													13	232					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719148	140719148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140719148G>A	uc003ljk.1	+	1	795	c.610G>A	c.(610-612)GAA>AAA	p.E204K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.E204K	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	204	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCGCGAGGAAGAGGCTGT	0.597													8	91					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720289	140720289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140720289C>T	uc003ljk.1	+	1	1936	c.1751C>T	c.(1750-1752)CCC>CTC	p.P584L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.P584L	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	584	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCGCAGAGCCCGGCTACCTG	0.662													18	216					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723788	140723788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140723788G>A	uc003ljm.1	+	1	188	c.188G>A	c.(187-189)GGA>GAA	p.G63E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Missense_Mutation_p.G63E	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	63	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGAGCGCGGAGTCCGCATC	0.612											OREG0016855	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	148					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724001	140724001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140724001C>T	uc003ljm.1	+	1	401	c.401C>T	c.(400-402)CCA>CTA	p.P134L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA3_uc011dap.1_Missense_Mutation_p.P134L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	134	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTAATTTCCCAACAGAGGAA	0.333													4	29					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751953	140751953	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140751953C>T	uc003ljw.1	+	1	1992	c.1992C>T	c.(1990-1992)TTC>TTT	p.F664F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.F664F|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	664	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTAATCTTCGCAGATAGCT	0.607													5	95					0	0	1	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140783937	140783938	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140783937_140783938CC>TT	uc003lkh.1	+	1	1418_1419	c.1418_1419CC>TT	c.(1417-1419)TCC>TTT	p.S473F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.S473F	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	473	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCATCTTCTCCGTGATTGCCT	0.47													4	62					0	0	1	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812573	140812573	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:140812573C>T	uc003lkt.1	+	1	2416	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.F749F	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGCTTTCCTGCAGACCT	0.637													11	166					0	0	1	0	0
ARAP3	64411	broad.mit.edu	37	5	141052595	141052595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:141052595G>A	uc003llm.2	-	7	1156	c.1078C>T	c.(1078-1080)CGC>TGC	p.R360C	ARAP3_uc011dbe.1_Missense_Mutation_p.R22C|ARAP3_uc003lln.2_Missense_Mutation_p.R282C|ARAP3_uc003llo.1_Missense_Mutation_p.R360C	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	360	PH 1.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CTCTCTGTGCGGAACACGAAC	0.602													9	83					0	0	1	0	0
PCDH12	51294	broad.mit.edu	37	5	141337075	141337076	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:141337075_141337076CC>TT	uc003llx.2	-	1	1552_1553	c.341_342GG>AA	c.(340-342)GGG>GAA	p.G114E		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	114	Cadherin 1.|Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCAAATCCCCTGTGGCAAG	0.574													7	144					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393509	145393509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:145393509C>T	uc003lnt.2	+	5	1182	c.944C>T	c.(943-945)CCT>CTT	p.P315L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P315L	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	315							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCCATTCTCCTTCAGGGCGC	0.577													10	118					0	0	1	0	0
SPINK7	84651	broad.mit.edu	37	5	147695212	147695212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:147695212G>A	uc003lpd.2	+	4	280	c.223G>A	c.(223-225)GGA>AGA	p.G75R	uc003lpb.1_Intron	NM_032566	NP_115955	P58062	ISK7_HUMAN	serine peptidase inhibitor, Kazal type 7	75	Kazal-like.					extracellular region	protein binding|serine-type endopeptidase inhibitor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAAGTAATGGAAGAGTTCA	0.303													6	44					0	0	1	0	0
HTR4	3360	broad.mit.edu	37	5	147902871	147902871	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:147902871T>C	uc003lpn.2	-	5	556	c.392A>G	c.(391-393)AAC>AGC	p.N131S	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.N131S|HTR4_uc003lpj.1_Missense_Mutation_p.N131S|HTR4_uc003lpk.2_Missense_Mutation_p.N131S|HTR4_uc011dby.1_Missense_Mutation_p.N131S|HTR4_uc003lpl.2_Missense_Mutation_p.N131S|HTR4_uc003lpm.2_Missense_Mutation_p.N131S|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.N131S	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	131	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GGTCATCTTGTTCCTATAGAC	0.498													4	23					0	0	1	0	0
SLC6A7	6534	broad.mit.edu	37	5	149583553	149583553	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:149583553G>A	uc003lrr.2	+	10	1655	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	428	Helical; Name=9; (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	TGTTCTCAGGGCTCATCTGCG	0.587													4	26					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150696648	150696648	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:150696648G>A	uc003lty.2	-	10	1312	c.1182C>T	c.(1180-1182)TGC>TGT	p.C394C	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.C196C	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	394	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGCCAGGAGGCCTGCAGGGA	0.537													3	35					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150715010	150715010	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:150715010G>A	uc003lty.2	-	6	754	c.624C>T	c.(622-624)TTC>TTT	p.F208F	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.F10F|SLC36A2_uc010jhv.2_Silent_p.F208F	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	208	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAAGGGCAGGAAGGAGAGCA	0.527													12	133					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153026564	153026564	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:153026564C>T	uc003lva.3	+	3	662	c.297C>T	c.(295-297)TCC>TCT	p.S99S	GRIA1_uc003luy.3_Silent_p.S99S|GRIA1_uc003luz.3_Silent_p.S4S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Intron|GRIA1_uc011dcx.1_Silent_p.S30S|GRIA1_uc011dcy.1_Silent_p.S109S|GRIA1_uc011dcz.1_Silent_p.S109S|GRIA1_uc010jia.1_Silent_p.S79S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	99	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGCTGACCTCCTTTTGTGGGG	0.493													5	80					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153035405	153035405	+	Silent	SNP	C	T	T	rs147489207	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:153035405C>T	uc003lva.3	+	5	1037	c.672C>T	c.(670-672)ATC>ATT	p.I224I	GRIA1_uc003luy.3_Silent_p.I224I|GRIA1_uc003luz.3_Silent_p.I129I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.I144I|GRIA1_uc011dcx.1_Silent_p.I155I|GRIA1_uc011dcy.1_Silent_p.I234I|GRIA1_uc011dcz.1_Silent_p.I234I|GRIA1_uc010jia.1_Silent_p.I204I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	224	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGAATGGCATCGGCTACCACT	0.418													8	59					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153085343	153085343	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:153085343G>A	uc003lva.3	+	11	1904	c.1539G>A	c.(1537-1539)GGG>GGA	p.G513G	GRIA1_uc003luy.3_Silent_p.G513G|GRIA1_uc003luz.3_Silent_p.G418G|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.G433G|GRIA1_uc011dcx.1_Silent_p.G444G|GRIA1_uc011dcy.1_Silent_p.G523G|GRIA1_uc011dcz.1_Silent_p.G523G|GRIA1_uc010jia.1_Silent_p.G493G	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	513	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGAGTTTGGGGATCTCCATCA	0.408													5	70					0	0	1	0	0
HAND1	9421	broad.mit.edu	37	5	153857387	153857387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:153857387G>A	uc003lvn.2	-	1	438	c.182C>T	c.(181-183)CCG>CTG	p.P61L		NM_004821	NP_004812	O96004	HAND1_HUMAN	basic helix-loop-helix transcription factor	61					angiogenesis|cardiac left ventricle formation|cardiac right ventricle formation|cardiac septum morphogenesis|heart looping|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|trophectodermal cell differentiation|ventricular cardiac muscle tissue morphogenesis	cytoplasm|nucleolus|nucleoplasm	bHLH transcription factor binding|DNA binding|protein homodimerization activity|transcription coactivator activity				0	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			cgcgggcggcggcccgcccgc	0.622													3	12					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395297	154395297	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:154395297G>A	uc010jih.1	+	1	2038	c.1878G>A	c.(1876-1878)AAG>AAA	p.K626K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	626	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGAAACTAAAGGAATCCACAG	0.458													6	125					0	0	1	0	0
TIMD4	91937	broad.mit.edu	37	5	156381462	156381462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:156381462C>T	uc003lwh.2	-	2	421	c.364G>A	c.(364-366)GAT>AAT	p.D122N	TIMD4_uc010jii.2_Missense_Mutation_p.D122N	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	122	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATCTTTACATCGTTGAACCAG	0.507													7	49					0	0	1	0	0
TIMD4	91937	broad.mit.edu	37	5	156381695	156381695	+	Missense_Mutation	SNP	G	A	A	rs115724540	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:156381695G>A	uc003lwh.2	-	2	188	c.131C>T	c.(130-132)TCC>TTC	p.S44F	TIMD4_uc010jii.2_Missense_Mutation_p.S44F	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	44	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGAGACCAGGATGAGTACAG	0.542													5	60					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479455	156479455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:156479455G>A	uc010jij.1	-	4	775	c.590C>T	c.(589-591)CCA>CTA	p.P197L	HAVCR1_uc011ddl.1_Missense_Mutation_p.P28L|HAVCR1_uc003lwi.2_Missense_Mutation_p.P197L|HAVCR1_uc011ddm.1_Missense_Mutation_p.P197L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	192	10.|Extracellular (Potential).|11 X 6 AA approximate tandem repeats of V-P-T-T-T-T].|Thr-rich.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTTGTTGTTGGAATGCTCGT	0.453													16	354					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156592713	156592713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:156592713G>A	uc003lwn.2	-	1	567	c.467C>T	c.(466-468)CCC>CTC	p.P156L		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	156						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTCAGAAGAGGGACACAACTG	0.473													9	81					0	0	1	0	0
SOX30	11063	broad.mit.edu	37	5	157078486	157078486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:157078486C>T	uc003lxb.1	-	1	943	c.601G>A	c.(601-603)GGC>AGC	p.G201S	SOX30_uc003lxc.1_Missense_Mutation_p.G201S|SOX30_uc011dds.1_Intron	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	201					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGCTTTTGCCTGCCCCGCCT	0.662													16	157					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160763735	160763735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:160763735C>T	uc003lys.1	-	7	801	c.583G>A	c.(583-585)GAT>AAT	p.D195N	GABRB2_uc011deh.1_Missense_Mutation_p.D34N|GABRB2_uc003lyr.1_Missense_Mutation_p.D195N|GABRB2_uc003lyt.1_Missense_Mutation_p.D195N|GABRB2_uc010jiu.1_Missense_Mutation_p.D132N	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	195	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GCATTATCATCGCCACGCCAG	0.289													8	111					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161302643	161302643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:161302643G>A	uc010jiw.2	+	7	1022	c.554G>A	c.(553-555)GGA>GAA	p.G185E	GABRA1_uc010jix.2_Missense_Mutation_p.G185E|GABRA1_uc010jiy.2_Missense_Mutation_p.G185E|GABRA1_uc003lyx.3_Missense_Mutation_p.G185E|GABRA1_uc010jiz.2_Missense_Mutation_p.G185E|GABRA1_uc010jja.2_Missense_Mutation_p.G185E|GABRA1_uc010jjb.2_Missense_Mutation_p.G185E	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	185	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CTAAAATTTGGAAGTTGTGAG	0.393													7	63					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167645469	167645469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:167645469G>A	uc010jjd.2	+	23	4546	c.4546G>A	c.(4546-4548)GAT>AAT	p.D1516N	ODZ2_uc003lzr.3_Missense_Mutation_p.D1286N|ODZ2_uc003lzt.3_Missense_Mutation_p.D889N|ODZ2_uc010jje.2_Missense_Mutation_p.D780N	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTGCAAAAACGATGTCAATTG	0.488													20	181					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168233490	168233490	+	Missense_Mutation	SNP	A	T	T	rs140643965		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:168233490A>T	uc003mab.2	-	9	1316	c.896T>A	c.(895-897)ATG>AAG	p.M299K	SLIT3_uc010jjg.2_Missense_Mutation_p.M299K|SLIT3_uc010jji.2_Missense_Mutation_p.M299K|SLIT3_uc003mac.1_Missense_Mutation_p.M96K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	299	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGAATCTCCATCAAGCCCTT	0.582													9	127					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170239110	170239110	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:170239110T>G	uc003mau.2	+	10	1369	c.1171T>G	c.(1171-1173)TTC>GTC	p.F391V	GABRP_uc011dev.1_3'UTR	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	391	Cytoplasmic (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGCGACAAGTTCAAGTTTGT	0.403													8	49					0	0	1	0	0
FBXW11	23291	broad.mit.edu	37	5	171295697	171295697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:171295697G>A	uc003mbm.1	-	12	1942	c.1571C>T	c.(1570-1572)CCC>CTC	p.P524L	FBXW11_uc011dey.1_Missense_Mutation_p.P492L|FBXW11_uc003mbl.1_Missense_Mutation_p.P511L|FBXW11_uc003mbn.1_Missense_Mutation_p.P490L	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	524	WD 7.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTGGGCACTGGGAGGCACATT	0.458													6	92					0	0	1	0	0
STC2	8614	broad.mit.edu	37	5	172745135	172745135	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:172745135C>T	uc003mco.1	-	4	1934	c.624G>A	c.(622-624)TTG>TTA	p.L208L	STC2_uc003mcn.1_Silent_p.L123L	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	208					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TGCAGAAGCTCAAGATGGAGC	0.642													3	33					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174869338	174869338	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:174869338T>C	uc003mcz.2	-	2	1710	c.765A>G	c.(763-765)CAA>CAG	p.Q255Q		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	255	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	AACTTTCCGGTTGAGAACATT	0.478													6	80					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176318112	176318112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:176318112C>T	uc003mfa.2	-	4	432	c.340G>A	c.(340-342)GAG>AAG	p.E114K	HK3_uc003mez.2_5'Flank	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	114	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTATGCCCCTCAATGCCAGTT	0.612													6	91					0	0	1	0	0
NSD1	64324	broad.mit.edu	37	5	176709573	176709573	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:176709573C>T	uc003mfr.3	+	19	6138	c.6000C>T	c.(5998-6000)ACC>ACT	p.T2000T	NSD1_uc003mft.3_Silent_p.T1731T|NSD1_uc011dfx.1_Silent_p.T1648T	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2000	SET.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		ATATGCTCACCCTAGACAAAG	0.383			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			6	108					0	0	1	0	0
TMED9	54732	broad.mit.edu	37	5	177020755	177020755	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:177020755C>T	uc003mhx.2	+	3	393	c.390C>T	c.(388-390)TCC>TCT	p.S130S	TMED9_uc010jko.2_RNA	NM_017510	NP_059980	Q9BVK6	TMED9_HUMAN	transmembrane emp24 protein transport domain	130	GOLD.|Lumenal (Potential).				transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|integral to membrane					0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCAAGTTCTCCCTCTTTGCTG	0.567													14	202					0	0	1	0	0
N4BP3	23138	broad.mit.edu	37	5	177547340	177547340	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:177547340C>T	uc003mik.1	+	3	739	c.492C>T	c.(490-492)GCC>GCT	p.A164A	N4BP3_uc003mil.1_5'Flank	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	164						cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCCCGGGCCAGCCAGGCCC	0.701													3	11					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178391919	178391919	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:178391919C>T	uc003mjo.1	+	5	785	c.514C>T	c.(514-516)CAA>TAA	p.Q172*	ZNF454_uc010jkz.1_Nonsense_Mutation_p.Q172*	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCAGGGATTTCAACCTAGCAA	0.413													12	57					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178408800	178408800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:178408800G>A	uc003mjr.2	-	10	2671	c.2492C>T	c.(2491-2493)TCC>TTC	p.S831F	GRM6_uc003mjq.2_Missense_Mutation_p.S234F	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	831	Helical; Name=7; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CATGCCGAGGGACACCGAGGC	0.577													9	218					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178563038	178563038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:178563038C>T	uc003mjw.2	-	13	1957	c.1957G>A	c.(1957-1959)GAG>AAG	p.E653K		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	653	Cys-rich.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TGGCATCTCTCCTTGGCTGGA	0.602													16	163					0	0	1	0	0
MAML1	9794	broad.mit.edu	37	5	179192414	179192414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:179192414C>T	uc003mkm.2	+	2	666	c.403C>T	c.(403-405)CCT>TCT	p.P135S	MAML1_uc003mkn.1_Missense_Mutation_p.P135S	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	135					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGACCTCTTTCCTGGGCATAA	0.542													4	67					0	0	1	0	0
MAPK9	5601	broad.mit.edu	37	5	179688771	179688771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:179688771C>T	uc003mls.3	-	5	634	c.363G>A	c.(361-363)ATG>ATA	p.M121I	MAPK9_uc003mlt.3_Missense_Mutation_p.M121I|MAPK9_uc010jlc.2_Missense_Mutation_p.M121I|MAPK9_uc003mlv.3_Missense_Mutation_p.M121I|MAPK9_uc011dgx.1_Missense_Mutation_p.M121I	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	121	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GATCCAGCTCCATGTGAATAA	0.358													22	212					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180048900	180048900	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:180048900G>A	uc003mma.3	-	13	1741	c.1662C>T	c.(1660-1662)ATC>ATT	p.I554I	FLT4_uc003mlz.3_Silent_p.I554I|FLT4_uc003mmb.1_Silent_p.I87I|FLT4_uc011dgy.1_Silent_p.I554I	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	554	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGCCGTCGGGGATGGCTGTGG	0.652									Congenital_Hereditary_Lymphedema				20	172					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180424352	180424352	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr5:180424352C>T	uc003mmr.2	+	3	665	c.537C>T	c.(535-537)TCC>TCT	p.S179S		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	179	Ig-like V-type.|Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			CTTCAGACTCCAGAGCAAATG	0.512													4	38					0	0	1	0	0
DUSP22	56940	broad.mit.edu	37	6	348268	348268	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:348268C>T	uc003msx.2	+	6	868	c.429C>T	c.(427-429)GTC>GTT	p.V143V	DUSP22_uc011dhn.1_Silent_p.V143V|DUSP22_uc003msy.1_Silent_p.V100V	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	143					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		AGCATGAGGTCCATCAGGTAA	0.587													4	117					0	0	1	0	0
C6orf195	154386	broad.mit.edu	37	6	2623787	2623787	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:2623787G>A	uc003mtw.2	-	3	1255	c.270C>T	c.(268-270)TTC>TTT	p.F90F		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	90											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				CCGTGAAAGTGAAGGAGGAAA	0.597													6	74					0	0	1	0	0
MYLK4	340156	broad.mit.edu	37	6	2678502	2678502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:2678502G>A	uc003mty.3	-	10	1289	c.992C>T	c.(991-993)TCG>TTG	p.S331L	MYLK4_uc003mtx.3_Missense_Mutation_p.S46L	NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	331	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				GGCCTCCTCCGAGATGTCCTG	0.517													38	166					0	0	1	0	0
SERPINB1	1992	broad.mit.edu	37	6	2833938	2833939	+	Missense_Mutation	DNP	GG	AC	AC	rs143196754	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:2833938_2833939GG>AC	uc003mub.2	-	7	1087_1088	c.1043_1044CC>GT	c.(1042-1044)CCC>CGT	p.P348R	SERPINB1_uc003muc.2_Missense_Mutation_p.P197R	NM_030666	NP_109591	P30740	ILEU_HUMAN	serine (or cysteine) proteinase inhibitor, clade	348					regulation of proteolysis	cytoplasm|extracellular space	serine-type endopeptidase inhibitor activity			breast(4)|ovary(1)	5	Ovarian(93;0.0412)			OV - Ovarian serous cystadenocarcinoma(45;0.0717)		AATTTTCTTCGGGCATCAACAT	0.446													3	37					0	0	1	0	0
SERPINB6	5269	broad.mit.edu	37	6	2948778	2948778	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:2948778G>A	uc003muk.2	-	6	2880	c.885C>T	c.(883-885)TTC>TTT	p.F295F	SERPINB6_uc003mui.2_Silent_p.F178F|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Silent_p.F295F|SERPINB6_uc003mum.2_Silent_p.F295F|SERPINB6_uc003mun.2_Silent_p.F295F|SERPINB6_uc003muo.2_Silent_p.F295F	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	295					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	TGCCCAGCTCGAAGGCATCAG	0.547													26	181					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4069785	4069785	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:4069785C>T	uc003mvx.2	-	7	1012	c.672G>A	c.(670-672)CTG>CTA	p.L224L	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Silent_p.L161L	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	224										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GCTTCAAGTTCAGGTCCACCT	0.368													7	124					0	0	1	0	0
RPP40	10799	broad.mit.edu	37	6	4996298	4996298	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:4996298G>A	uc003mwl.2	-	7	815	c.780C>T	c.(778-780)TTC>TTT	p.F260F	RPP40_uc003mwm.2_Silent_p.F237F	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	260					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				AGGTTGATATGAAATTATTAG	0.368													7	62					0	0	1	0	0
RPP40	10799	broad.mit.edu	37	6	4996509	4996509	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:4996509G>A	uc003mwl.2	-	6	740	c.705C>T	c.(703-705)TGC>TGT	p.C235C	RPP40_uc003mwm.2_Silent_p.C212C	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	235					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				CCAGAGCCCGGCAGGACACCT	0.597													12	63					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6251088	6251088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:6251088C>T	uc003mwv.2	-	5	769	c.646G>A	c.(646-648)GGA>AGA	p.G216R	F13A1_uc011dib.1_Missense_Mutation_p.G153R	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	216					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTGACCTCTCCATAAAAAATT	0.383													4	61					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7579585	7579585	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:7579585G>A	uc003mxp.1	+	23	3441	c.3162G>A	c.(3160-3162)AAG>AAA	p.K1054K	DSP_uc003mxq.1_Silent_p.K1054K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1054	Globular 1.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACTGTAATAAGAACAAATTCC	0.473													8	58					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10876135	10876135	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:10876135G>A	uc003mzn.3	-	4	643	c.571C>T	c.(571-573)CGA>TGA	p.R191*	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	191					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TCGGATTCTCGAATTCTCTTT	0.448													8	78					0	0	1	0	0
DTNBP1	84062	broad.mit.edu	37	6	15627669	15627669	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:15627669C>T	uc003nbm.2	-	5	431	c.260G>A	c.(259-261)TGG>TAG	p.W87*	DTNBP1_uc003nbl.2_Nonsense_Mutation_p.W6*|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Nonsense_Mutation_p.W87*|DTNBP1_uc010jph.2_Nonsense_Mutation_p.W74*	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	87					actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			TTTCTTCTCCCAGTGCGCAGA	0.493									Hermansky-Pudlak_syndrome				3	32					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16327214	16327214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:16327214G>A	uc003nbt.2	-	8	2299	c.1328C>T	c.(1327-1329)CCA>CTA	p.P443L	ATXN1_uc010jpi.2_Missense_Mutation_p.P443L|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	443					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CACCGGGAGTGGCTCTGAAGC	0.622													22	244					0	0	1	0	0
MRS2	57380	broad.mit.edu	37	6	24416695	24416695	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:24416695T>C	uc003neb.2	+	7	912	c.790T>C	c.(790-792)TTG>CTG	p.L264L	MRS2_uc003nea.2_Silent_p.L264L|MRS2_uc011djl.1_Silent_p.L267L|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Silent_p.L214L|MRS2_uc003nec.2_Silent_p.L141L	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	264	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						TGAGGAAGAGTTGCTAGAAGA	0.303													17	161					0	0	1	0	0
MRS2	57380	broad.mit.edu	37	6	24416704	24416704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:24416704G>A	uc003neb.2	+	7	921	c.799G>A	c.(799-801)GAG>AAG	p.E267K	MRS2_uc003nea.2_Missense_Mutation_p.E267K|MRS2_uc011djl.1_Missense_Mutation_p.E270K|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.E217K|MRS2_uc003nec.2_Missense_Mutation_p.E144K	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	267	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						GTTGCTAGAAGAGCTCTGTGT	0.308													17	165					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596508	24596508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:24596508C>T	uc011djo.1	-	3	631	c.394G>A	c.(394-396)GAC>AAC	p.D132N	KIAA0319_uc011djp.1_Missense_Mutation_p.D87N|KIAA0319_uc003neh.1_Missense_Mutation_p.D132N|KIAA0319_uc011djq.1_Missense_Mutation_p.D123N|KIAA0319_uc011djr.1_Missense_Mutation_p.D132N	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	132	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TCAGGTGAGTCCCCCCAGATC	0.547													9	76					0	0	1	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726643	25726643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:25726643C>T	uc003nfc.2	-	1	148	c.113G>A	c.(112-114)GGA>GAA	p.G38E	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	38					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGCATAGTTTCCCTTACGAAG	0.552													6	45					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25799051	25799051	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:25799051G>A	uc003nfh.3	-	12	1482	c.1366C>T	c.(1366-1368)CAG>TAG	p.Q456*	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Nonsense_Mutation_p.Q454*|SLC17A1_uc010jqc.1_Nonsense_Mutation_p.Q400*	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	456					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GCCCAGTCCTGAATTTCTGCT	0.428													5	89					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25813083	25813083	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:25813083G>A	uc003nfh.3	-	8	989	c.873C>T	c.(871-873)TCC>TCT	p.S291S	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.S289S|SLC17A1_uc010jqc.1_Intron	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	291					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						CATGAAGCATGGAGTTGATAA	0.358													4	30					0	0	1	0	0
BTN1A1	696	broad.mit.edu	37	6	26505198	26505198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:26505198G>A	uc003nif.3	+	3	493	c.473G>A	c.(472-474)GGA>GAA	p.G158E		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	158	Extracellular (Potential).|Ig-like V-type 2.					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						CAAGAGAATGGAGAAATCTGT	0.502													4	51					0	0	1	0	0
PRSS16	10279	broad.mit.edu	37	6	27222777	27222777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:27222777C>T	uc003nja.2	+	11	1355	c.1343C>T	c.(1342-1344)CCC>CTC	p.P448L	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Missense_Mutation_p.P191L|PRSS16_uc003njd.2_RNA	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	448					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						GACACAGACCCCTGGCATGTG	0.552													18	226					0	0	1	0	0
FKSG83	83954	broad.mit.edu	37	6	27293418	27293418	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:27293418G>A	uc010jqt.2	+	1	841	c.357G>A	c.(355-357)GAG>GAA	p.E119E	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	119						integral to membrane	pheromone receptor activity				0						CCATGTATGAGAACAGCCTAA	0.353													4	64					0	0	1	0	0
ZNF391	346157	broad.mit.edu	37	6	27368423	27368423	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:27368423G>C	uc003njf.1	+	3	792	c.274G>C	c.(274-276)GAT>CAT	p.D92H		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	92					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						AAACTCCAAAGATAATTCAGA	0.373													12	58					0	0	1	0	0
PGBD1	84547	broad.mit.edu	37	6	28269385	28269385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:28269385C>T	uc003nky.2	+	7	2124	c.1754C>T	c.(1753-1755)CCC>CTC	p.P585L	PGBD1_uc003nkz.2_Missense_Mutation_p.P585L	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	585					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						TGGTTTGAACCCTATCAAGAA	0.398													10	69					0	0	1	0	0
ZNF323	64288	broad.mit.edu	37	6	28294109	28294109	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:28294109T>C	uc003nla.2	-	4	1455	c.1055A>G	c.(1054-1056)CAG>CGG	p.Q352R	ZNF323_uc003nld.2_Missense_Mutation_p.Q352R|ZNF323_uc010jra.2_Missense_Mutation_p.Q352R|ZNF323_uc003nlb.2_Missense_Mutation_p.Q193R|ZNF323_uc010jrb.2_Missense_Mutation_p.Q193R|ZNF323_uc003nlc.2_Missense_Mutation_p.Q352R	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	352	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTCACGACACTGATAGCGCTT	0.502													17	178					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540176	28540176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:28540176C>T	uc003nlo.2	-	4	4108	c.3490G>A	c.(3490-3492)GAA>AAA	p.E1164K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1164					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttacctacttcattgataatt	0													3	5					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29274811	29274811	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:29274811G>A	uc011dln.1	+	1	345	c.345G>A	c.(343-345)GTG>GTA	p.V115V		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTCTCACAGTGATGTCTTATG	0.448													6	82					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29408455	29408455	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:29408455C>T	uc011dlp.1	+	1	663	c.663C>T	c.(661-663)CTC>CTT	p.L221L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGCGTATCCTCGTTACCATCT	0.592													16	258					0	0	1	0	0
OR10C1	442194	broad.mit.edu	37	6	29408570	29408570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:29408570C>T	uc011dlp.1	+	1	778	c.778C>T	c.(778-780)CGC>TGC	p.R260C	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATCTATATTCGCCCTAAGGC	0.582													39	330					0	0	1	0	0
MOG	4340	broad.mit.edu	37	6	29627199	29627199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:29627199G>A	uc003nnf.2	+	2	370	c.192G>A	c.(190-192)ATG>ATA	p.M64I	MOG_uc003qzk.1_Missense_Mutation_p.M64I|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Missense_Mutation_p.M64I|MOG_uc003nmz.2_Missense_Mutation_p.M64I|MOG_uc011dlt.1_Intron|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Missense_Mutation_p.M64I|MOG_uc003nne.2_Missense_Mutation_p.M64I|MOG_uc003nng.2_Missense_Mutation_p.M64I|MOG_uc003nnh.2_Missense_Mutation_p.M64I|MOG_uc003nni.2_Missense_Mutation_p.M64I|MOG_uc003nnj.2_Missense_Mutation_p.M64I|MOG_uc003nnk.2_Missense_Mutation_p.M64I	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	64	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						CTACAGGCATGGAGGTGGGGT	0.562													13	157					0	0	1	0	0
TRIM40	135644	broad.mit.edu	37	6	30105123	30105123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:30105123G>A	uc003npk.2	+	2	696	c.310G>A	c.(310-312)GAA>AAA	p.E104K	TRIM40_uc003npl.1_RNA|TRIM40_uc003npm.2_Missense_Mutation_p.E104K	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	104	B box-type.					intracellular	zinc ion binding			ovary(1)	1						GTCTCATCATGAACTGACCAT	0.552													9	129					0	0	1	0	0
C6orf15	29113	broad.mit.edu	37	6	31079879	31079879	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31079879C>A	uc003nsk.1	-	2	257	c.257G>T	c.(256-258)GGC>GTC	p.G86V	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	86											0						AGGTGGGAAGCCATCTGATGC	0.602													7	58					7.48243e-07	7.54965e-07	1	1	0
CDSN	1041	broad.mit.edu	37	6	31084379	31084379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31084379G>A	uc003nsm.1	-	2	1040	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	338	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGCTGCAAAGGAAGGGACCCC	0.552													5	36					0	0	1	0	0
LTB	4050	broad.mit.edu	37	6	31550168	31550168	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31550168C>T	uc003nuk.2	-	1	35	c.27G>A	c.(25-27)AGG>AGA	p.R9R	LTB_uc003nul.2_Silent_p.R9R	NM_002341	NP_002332	Q06643	TNFC_HUMAN	lymphotoxin-beta isoform a	9	Cytoplasmic (Potential).				cell-cell signaling|immune response|positive regulation of interleukin-12 biosynthetic process|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding				0					Infliximab(DB00065)|Simvastatin(DB00641)	GCCTCCCACCCCTGCCCTCCA	0.652													5	53					0	0	1	0	0
MSH5	4439	broad.mit.edu	37	6	31711761	31711761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31711761C>T	uc003nwv.1	+	6	575	c.496C>T	c.(496-498)CTC>TTC	p.L166F	MSH5_uc003nwt.1_Missense_Mutation_p.L166F|MSH5_uc003nwu.1_Missense_Mutation_p.L166F|MSH5_uc003nww.1_Missense_Mutation_p.L166F|MSH5_uc003nwx.1_Missense_Mutation_p.L166F|MSH5_uc011dof.1_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	166					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						TGAGAAAATCCTCTTCCTCTC	0.517								Direct_reversal_of_damage|MMR					31	310					0	0	1	0	0
MSH5	4439	broad.mit.edu	37	6	31726056	31726056	+	Missense_Mutation	SNP	C	T	T	rs28399977		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31726056C>T	uc003nwv.1	+	13	1208	c.1129C>T	c.(1129-1131)CTC>TTC	p.L377F	MSH5_uc003nwt.1_Missense_Mutation_p.L394F|MSH5_uc003nwu.1_Missense_Mutation_p.L377F|MSH5_uc003nww.1_Missense_Mutation_p.L377F|MSH5_uc003nwx.1_Missense_Mutation_p.L394F|MSH5_uc011dof.1_Missense_Mutation_p.L76F|MSH5_uc003nwy.1_Missense_Mutation_p.L51F|MSH5_uc003nwz.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	377					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						TATCGCCAGCCTCATTGGGAA	0.552								Direct_reversal_of_damage|MMR					4	71					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31929122	31929122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:31929122C>T	uc003nyn.1	+	8	1137	c.748C>T	c.(748-750)CCC>TCC	p.P250S	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.P92S|SKIV2L_uc011dov.1_Missense_Mutation_p.P57S	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	250						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CTGCAGTGCTCCCCTGGCCCG	0.597													19	136					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32020585	32020585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32020585G>A	uc003nzl.2	-	26	9173	c.8971C>T	c.(8971-8973)CCC>TCC	p.P2991S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3038	Fibronectin type-III 22.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACCACCTGGGGCCGCCCGTCC	0.662													9	59					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32029489	32029489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32029489C>T	uc003nzl.2	-	21	7379	c.7177G>A	c.(7177-7179)GAA>AAA	p.E2393K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2453					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGGTCTCTTCCTCTGCAGCT	0.622													4	60					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32036463	32036463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32036463G>A	uc003nzl.2	-	17	6126	c.5924C>T	c.(5923-5925)TCA>TTA	p.S1975L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2057					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGAGGTTCTGAAGGCTTCTC	0.642													4	88					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32083616	32083616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32083616G>A	uc003nzn.2	-	18	2045	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Missense_Mutation_p.S668F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	671	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGGGTTGGGGATGGCTGTTT	0.602													6	72					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32084285	32084286	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32084285_32084286GG>AA	uc003nzn.2	-	17	1886_1887	c.1853_1854CC>TT	c.(1852-1854)TCC>TTT	p.S618F	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Missense_Mutation_p.S191F|ATF6B_uc003nzo.2_Missense_Mutation_p.S615F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	618	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCATCACCAGGGACATCTTGGG	0.624													8	76					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32178660	32178660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32178660G>A	uc003obb.2	-	18	2873	c.2734C>T	c.(2734-2736)CCC>TCC	p.P912S	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	912	EGF-like 23.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AAATAGGAGGGGCCGCTGTCG	0.567													4	34					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32605241	32605241	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32605241C>T	uc003obr.2	+	1	59	c.6C>T	c.(4-6)ATC>ATT	p.I2I	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Silent_p.I2I	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	2					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						AGAGGATGATCCTAAACAAAG	0.522													3	43					0	0	1	0	0
HLA-DQB1	3119	broad.mit.edu	37	6	32629807	32629807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32629807C>T	uc003obw.2	-	3	680	c.598G>A	c.(598-600)GGA>AGA	p.G200R	HLA-DQB1_uc010juc.1_Missense_Mutation_p.G155R|HLA-DQB1_uc003obv.2_Missense_Mutation_p.G200R|HLA-DQB1_uc011dqd.1_Missense_Mutation_p.G200R|HLA-DQB1_uc011dqe.1_3'UTR	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	200	Extracellular (Potential).|Beta-2.|Ig-like C1-type.		GD -> A (in allele DQB1*03:09).		antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TAGACATCTCCACGCTGGGGA	0.567									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				17	114					0	0	1	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32714114	32714114	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:32714114C>T	uc003obx.2	+	4	769	c.711C>T	c.(709-711)GTC>GTT	p.V237V		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	237	Helical; (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGGGCACTGTCTTCATCATCC	0.532													7	103					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33135053	33135053	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:33135053G>A	uc003ocx.1	-	57	4392	c.4164C>T	c.(4162-4164)CCC>CCT	p.P1388P	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.P1302P|COL11A2_uc003ocz.1_Silent_p.P1281P	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1388	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CAGGACCTGGGGGCCCAGCCT	0.657													6	88					0	0	1	0	0
TAPBP	6892	broad.mit.edu	37	6	33271739	33271739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:33271739G>A	uc003odx.1	-	7	1499	c.1328C>T	c.(1327-1329)TCA>TTA	p.S443L	TAPBP_uc010jus.1_Missense_Mutation_p.S461L|TAPBP_uc003ody.2_3'UTR|TAPBP_uc003odz.2_Missense_Mutation_p.S443L|TAPBP_uc010jut.1_Missense_Mutation_p.S356L	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	443	Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						TACCTTCTTTGAATCCTTGCA	0.458													16	110					0	0	1	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423862	33423862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:33423862C>T	uc003oeq.2	+	2	1253	c.985C>T	c.(985-987)CCT>TCT	p.P329S		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	329	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTCTTGTTGCCTTCAGGGCC	0.567													11	85					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34003902	34003902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:34003902C>T	uc003oir.3	-	8	2155	c.1985G>A	c.(1984-1986)GGG>GAG	p.G662E	GRM4_uc011dsn.1_Missense_Mutation_p.G615E|GRM4_uc010jvh.2_Missense_Mutation_p.G662E|GRM4_uc010jvi.2_Missense_Mutation_p.G354E|GRM4_uc003oio.2_Missense_Mutation_p.G354E|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.G522E|GRM4_uc003oiq.2_Missense_Mutation_p.G529E|GRM4_uc011dsm.1_Missense_Mutation_p.G493E	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	662	Helical; Name=3; (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GATGCTCATCCCTAGTCCCAG	0.607													7	92					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826139	34826139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:34826139C>T	uc003oju.3	+	14	2240	c.2006C>T	c.(2005-2007)GCC>GTC	p.A669V	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	669										ovary(3)	3						TTGCATCATGCCTTTCAGATG	0.498													6	68					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826651	34826651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:34826651C>T	uc003oju.3	+	14	2752	c.2518C>T	c.(2518-2520)CGC>TGC	p.R840C	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	840	Potential.									ovary(3)	3						GGCTCTGCTTCGCCTGAAGGA	0.537													15	165					0	0	1	0	0
DEF6	50619	broad.mit.edu	37	6	35278413	35278413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:35278413C>T	uc003okk.2	+	3	454	c.415C>T	c.(415-417)CCT>TCT	p.P139S	DEF6_uc010jvs.2_Missense_Mutation_p.P139S|DEF6_uc010jvt.2_5'UTR	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	139						cytoplasm|nucleus|plasma membrane					0						GATCATGGTTCCTGATGAGGT	0.527													7	96					0	0	1	0	0
DEF6	50619	broad.mit.edu	37	6	35289167	35289167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:35289167G>A	uc003okk.2	+	11	1915	c.1876G>A	c.(1876-1878)GAT>AAT	p.D626N	DEF6_uc010jvs.2_Missense_Mutation_p.D601N|DEF6_uc010jvt.2_Missense_Mutation_p.D371N	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	626						cytoplasm|nucleus|plasma membrane					0						AGATAAACTGGATCCAGCACC	0.572													7	68					0	0	1	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773726	35773726	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:35773726C>T	uc003olg.1	+	1	656	c.279C>T	c.(277-279)GCC>GCT	p.A93A		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	93						integral to membrane				skin(1)	1						CCTCTAGAGCCTTCAAGACTG	0.552													19	229					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36767754	36767754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:36767754G>A	uc003omr.1	-	4	344	c.277C>T	c.(277-279)CGT>TGT	p.R93C	CPNE5_uc003oms.1_Missense_Mutation_p.R55C	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	93	C2 1.									skin(1)	1						AGATCAAAACGGAGGTTCTGC	0.517													4	74					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36976627	36976627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:36976627C>T	uc010jwp.1	+	2	257	c.86C>T	c.(85-87)CCC>CTC	p.P29L	FGD2_uc003onf.2_Missense_Mutation_p.P29L|FGD2_uc011dtu.1_Missense_Mutation_p.P29L|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	29					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GAAGCAGCACCCAGAGGCCAG	0.627													4	100					0	0	1	0	0
RNF8	9025	broad.mit.edu	37	6	37336780	37336780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:37336780C>T	uc003onq.3	+	3	954	c.761C>T	c.(760-762)TCC>TTC	p.S254F	RNF8_uc003onr.3_Missense_Mutation_p.S254F|RNF8_uc011dtx.1_Missense_Mutation_p.S186F	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	254					cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						GTGACCATGTCCAGGATTCTG	0.438													8	59					0	0	1	0	0
MDGA1	266727	broad.mit.edu	37	6	37626154	37626154	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:37626154G>A	uc003onu.1	-	3	1428	c.249C>T	c.(247-249)TTC>TTT	p.F83F		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	83	Ig-like 1.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						ATGTCTCCTGGAACTTGTCCG	0.657													15	104					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38743637	38743637	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38743637T>C	uc003ooe.1	+	11	1821	c.1221T>C	c.(1219-1221)GTT>GTC	p.V407V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACCAAGGGGTTAAGAAAAAGC	0.303													8	89					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38843385	38843385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38843385G>A	uc003ooe.1	+	51	7588	c.6988G>A	c.(6988-6990)GGG>AGG	p.G2330R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCTTCTGGAAGGGTTAATTCC	0.284													4	35					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38891817	38891817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38891817C>T	uc003ooe.1	+	71	10790	c.10190C>T	c.(10189-10191)CCT>CTT	p.P3397L	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TACCTTGGTCCTTTCAATCAG	0.413													4	82					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38976596	38976596	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38976596G>A	uc003ooe.1	+	87	13170	c.12570G>A	c.(12568-12570)CAG>CAA	p.Q4190Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTAGGTATCAGAGTAACACTG	0.393													7	110					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38976650	38976650	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38976650G>A	uc003ooe.1	+	87	13224	c.12624G>A	c.(12622-12624)GAG>GAA	p.E4208E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AACCCAAAGAGAGTGGAGGTG	0.418													14	163					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38998062	38998062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:38998062C>T	uc003ooe.1	+	91	13967	c.13367C>T	c.(13366-13368)CCC>CTC	p.P4456L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TACAAGAAACCCAGGCGAACT	0.493													10	95					0	0	1	0	0
GLP1R	2740	broad.mit.edu	37	6	39025308	39025308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:39025308C>T	uc003ooj.3	+	3	296	c.236C>T	c.(235-237)TCG>TTG	p.S79L	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	79	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	GAGCCAGGCTCGTTCGTGAAT	0.622													6	39					0	0	1	0	0
DAAM2	23500	broad.mit.edu	37	6	39864652	39864652	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:39864652C>T	uc003oow.2	+	20	2562	c.2406C>T	c.(2404-2406)ATC>ATT	p.I802I	DAAM2_uc003oox.2_Silent_p.I802I	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	802	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					TAGAGGTCATCCTAGCCATAG	0.612													6	30					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39874839	39874839	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:39874839C>T	uc003opb.2	-	10	1343	c.1205G>A	c.(1204-1206)TGG>TAG	p.W402*	MOCS1_uc003opa.2_3'UTR|MOCS1_uc003opc.2_Nonsense_Mutation_p.W386*|MOCS1_uc003opd.2_3'UTR|MOCS1_uc003ope.2_Nonsense_Mutation_p.W299*	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	402					Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GAGCGGGTCCCAGGAGAAAAT	0.498													6	64					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40399600	40399600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:40399600G>A	uc003oph.1	-	2	1718	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	418	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGGGCTTTTGGGAGGCTCTCC	0.652													6	101					0	0	1	0	0
TREML2	79865	broad.mit.edu	37	6	41160570	41160570	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:41160570G>A	uc010jxm.1	-	4	1034	c.855C>T	c.(853-855)GTC>GTT	p.V285V		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	285	Helical; (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AAAACCCATAGACCATGATCA	0.557													6	80					0	0	1	0	0
PGC	5225	broad.mit.edu	37	6	41712416	41712416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:41712416C>T	uc003ora.1	-	2	239	c.190G>A	c.(190-192)GAG>AAG	p.E64K		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	64					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			GCCATGGGCTCGTAGGTCACG	0.582													4	56					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42211043	42211043	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42211043G>A	uc003osd.2	-	15	3365	c.2802C>T	c.(2800-2802)ATC>ATT	p.I934I	TRERF1_uc011duq.1_Silent_p.I851I|TRERF1_uc003osb.2_Silent_p.I690I|TRERF1_uc003osc.2_Silent_p.I690I|TRERF1_uc003ose.2_Silent_p.I954I	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	934	SANT.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCAGCCGCATGATCTTTTTCC	0.552													7	182					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42224740	42224740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42224740G>A	uc003osd.2	-	11	3000	c.2437C>T	c.(2437-2439)CCC>TCC	p.P813S	TRERF1_uc011duq.1_Missense_Mutation_p.P730S|TRERF1_uc003osb.2_Missense_Mutation_p.P569S|TRERF1_uc003osc.2_Missense_Mutation_p.P569S|TRERF1_uc003ose.2_Missense_Mutation_p.P833S	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	813	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TCTGGCCAGGGCTTCCATACC	0.512													4	101					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42236591	42236591	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42236591C>T	uc003osd.2	-	5	1301	c.738G>A	c.(736-738)CAG>CAA	p.Q246Q	TRERF1_uc011duq.1_Silent_p.Q246Q|TRERF1_uc003osb.2_Silent_p.Q85Q|TRERF1_uc003osc.2_Silent_p.Q85Q|TRERF1_uc003ose.2_Silent_p.Q246Q	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	246	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCTGTCCTCCCTGCACTGGCA	0.607													6	83					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42236751	42236751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42236751G>A	uc003osd.2	-	5	1141	c.578C>T	c.(577-579)CCA>CTA	p.P193L	TRERF1_uc011duq.1_Missense_Mutation_p.P193L|TRERF1_uc003osb.2_Missense_Mutation_p.P32L|TRERF1_uc003osc.2_Missense_Mutation_p.P32L|TRERF1_uc003ose.2_Missense_Mutation_p.P193L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	193					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AGCCGGTGCTGGGGGCTCCAT	0.622													13	71					0	0	1	0	0
UBR2	23304	broad.mit.edu	37	6	42656116	42656116	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42656116C>T	uc011dur.1	+	45	5016	c.5016C>T	c.(5014-5016)ATC>ATT	p.I1672I	UBR2_uc011dus.1_Silent_p.I1317I|UBR2_uc003osh.2_RNA|UBR2_uc011dut.1_Silent_p.I260I|UBR2_uc011duu.1_Silent_p.I64I	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1672					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			GAGTGGGCATCTTCCTGAGGT	0.517													18	144					0	0	1	0	0
KLHDC3	116138	broad.mit.edu	37	6	42986153	42986153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:42986153C>T	uc003otl.2	+	6	761	c.592C>T	c.(592-594)CGT>TGT	p.R198C	KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Missense_Mutation_p.R174C|KLHDC3_uc003otn.2_Missense_Mutation_p.R82C|KLHDC3_uc003oto.2_Missense_Mutation_p.R139C	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	198	Kelch 4.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CTTTGGGGGCCGTGCCGACCG	0.577													4	55					0	0	1	0	0
CUL7	9820	broad.mit.edu	37	6	43008415	43008415	+	Silent	SNP	G	A	A	rs147056081	by1000genomes	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43008415G>A	uc003otq.2	-	21	4179	c.3876C>T	c.(3874-3876)ATC>ATT	p.I1292I	CUL7_uc010jyg.2_Silent_p.I571I|CUL7_uc011dvb.1_Silent_p.I1376I|CUL7_uc010jyh.2_Silent_p.I285I|KLC4_uc003otr.1_5'Flank	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1292					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			AGCAGGGACCGATCTGCTCCA	0.662													12	88					0	0	1	0	0
MRPL2	51069	broad.mit.edu	37	6	43023883	43023883	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43023883G>A	uc003ots.1	-	4	579	c.456C>T	c.(454-456)ATC>ATT	p.I152I	CUL7_uc011dvb.1_5'Flank|CUL7_uc003otq.2_5'Flank|CUL7_uc010jyh.2_5'Flank|KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Silent_p.I152I	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	152					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		TTTCTGTGGCGATGATCCAGC	0.552													12	161					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43153745	43153745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43153745C>T	uc003ouk.2	+	4	878	c.803C>T	c.(802-804)TCC>TTC	p.S268F	CUL9_uc003ouj.1_Missense_Mutation_p.S268F|CUL9_uc003oul.2_Missense_Mutation_p.S268F|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'Flank	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	268					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TGTGTCACGTCCCTCCTGGAT	0.542													5	60					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43173000	43173000	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43173000G>A	uc003ouk.2	+	24	4708	c.4633_splice	c.e24-1	p.M1545_splice	CUL9_uc003oul.2_Splice_Site_p.M1545_splice|CUL9_uc010jyk.2_Splice_Site_p.M697_splice	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein						ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCTGCCCCCAGATGAGTGAGC	0.567													26	347					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43222808	43222808	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43222808C>T	uc003ouq.1	+	7	877	c.598C>T	c.(598-600)CGA>TGA	p.R200*		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	200	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGCCGGGTTTCGAGGAACGGT	0.607													11	115					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43223480	43223480	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43223480G>A	uc003ouq.1	+	9	1026	c.747G>A	c.(745-747)GGG>GGA	p.G249G		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	249	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AACAGGTAGGGATGATCAAGG	0.582													7	125					0	0	1	0	0
SLC22A7	10864	broad.mit.edu	37	6	43267131	43267131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43267131G>A	uc003out.2	+	3	502	c.403G>A	c.(403-405)GAT>AAT	p.D135N	SLC22A7_uc010jyl.1_Missense_Mutation_p.D133N|SLC22A7_uc003ous.2_Missense_Mutation_p.D133N	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	135						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CTTGCAGTGGGATCTGGTGTG	0.587													3	63					0	0	1	0	0
SLC22A7	10864	broad.mit.edu	37	6	43269343	43269343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:43269343G>A	uc003out.2	+	7	1073	c.974G>A	c.(973-975)GGG>GAG	p.G325E	SLC22A7_uc010jyl.1_Missense_Mutation_p.G326E|SLC22A7_uc003ous.2_Missense_Mutation_p.G323E	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	325						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			GTGGCCGCCGGGGAACGGGTG	0.587													4	51					0	0	1	0	0
RCAN2	10231	broad.mit.edu	37	6	46214568	46214568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:46214568G>A	uc003oyb.1	-	3	665	c.350C>T	c.(349-351)CCA>CTA	p.P117L	RCAN2_uc003oyc.1_Missense_Mutation_p.P163L|RCAN2_uc003oyd.1_Missense_Mutation_p.P163L	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	117					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						GCCAACAGGTGGGGAGGAAGG	0.547													6	38					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46847631	46847631	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:46847631C>T	uc003oyo.3	-	9	1249	c.960G>A	c.(958-960)TCG>TCA	p.S320S	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Silent_p.S320S|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Silent_p.S320S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	320	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CGGTGTAAATCGAGAATCTGC	0.463													9	98					0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49660530	49660530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:49660530C>T	uc003ozq.2	-	10	944	c.688G>A	c.(688-690)GAA>AAA	p.E230K	CRISP2_uc003ozl.2_Missense_Mutation_p.E230K|CRISP2_uc003ozn.2_Missense_Mutation_p.E230K|CRISP2_uc003ozr.2_Missense_Mutation_p.E230K|CRISP2_uc003ozo.2_Missense_Mutation_p.E230K|CRISP2_uc003ozm.2_Missense_Mutation_p.E265K|CRISP2_uc003ozp.2_Missense_Mutation_p.E230K	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	230						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTGCACTTTTCCTTGAGTAAC	0.393													4	51					0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49676846	49676846	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:49676846T>A	uc003ozq.2	-	4	320	c.64A>T	c.(64-66)AAG>TAG	p.K22*	CRISP2_uc003ozl.2_Nonsense_Mutation_p.K22*|CRISP2_uc003ozn.2_Nonsense_Mutation_p.K22*|CRISP2_uc003ozr.2_Nonsense_Mutation_p.K22*|CRISP2_uc003ozo.2_Nonsense_Mutation_p.K22*|CRISP2_uc003ozm.2_Nonsense_Mutation_p.K22*|CRISP2_uc003ozp.2_Nonsense_Mutation_p.K22*	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	22						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			AACCTTACCTTTCCTTCTGCA	0.413													8	63					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754071	49754071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:49754071C>T	uc003ozu.2	-	1	937	c.830G>A	c.(829-831)GGT>GAT	p.G277D		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	277					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AATCCTTACACCATTCTTTTG	0.438													10	114					0	0	1	0	0
IL17A	3605	broad.mit.edu	37	6	52054017	52054017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:52054017C>T	uc003pak.1	+	3	440	c.395C>T	c.(394-396)TCC>TTC	p.S132F		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	132					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					TGCCCCAACTCCTTCCGGCTG	0.597													8	54					0	0	1	0	0
MCM3	4172	broad.mit.edu	37	6	52144205	52144205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:52144205G>A	uc003pan.1	-	5	834	c.724C>T	c.(724-726)CGT>TGT	p.R242C	MCM3_uc011dwu.1_Missense_Mutation_p.R196C	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	242					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					GGAAGGCAACGGTAGGTTCCC	0.552													7	59					0	0	1	0	0
GCLC	2729	broad.mit.edu	37	6	53372315	53372315	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:53372315C>T	uc003pbw.1	-	9	1435	c.1047G>A	c.(1045-1047)ACG>ACA	p.T349T	GCLC_uc003pbv.1_Silent_p.T73T	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	349					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	CTTTATCTATCGTCAAGTCGA	0.373													9	163					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53986345	53986345	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:53986345T>A	uc003pcg.3	+	2	277	c.164T>A	c.(163-165)TTC>TAC	p.F55Y	C6orf142_uc003pcf.2_Missense_Mutation_p.F55Y|C6orf142_uc003pch.3_Intron|C6orf142_uc011dwz.1_Intron|C6orf142_uc011dxa.1_Missense_Mutation_p.F66Y	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	55						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					ACCTCTAAATTCCTTGTTAAA	0.348													7	96					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54173485	54173485	+	Missense_Mutation	SNP	G	A	A	rs147898099		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:54173485G>A	uc003pcj.2	+	1	283	c.137G>A	c.(136-138)CGA>CAA	p.R46Q	TINAG_uc003pci.2_Missense_Mutation_p.R46Q|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	46					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			CAAGGTACTCGATTCAAAAGA	0.428													14	81					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54735141	54735141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:54735141G>A	uc003pck.2	+	2	213	c.97G>A	c.(97-99)GAT>AAT	p.D33N		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	33										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGTAGCCATTGATATTCTGAT	0.378													12	114					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805279	54805279	+	Missense_Mutation	SNP	C	T	T	rs115872183	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:54805279C>T	uc003pck.2	+	5	1626	c.1510C>T	c.(1510-1512)CAT>TAT	p.H504Y		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	504										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTAAATGATCATTCAGAAGC	0.408													5	73					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55119985	55119985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55119985C>T	uc003pcl.2	+	3	769	c.454C>T	c.(454-456)CGG>TGG	p.R152W	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R87W	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	152	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CGCCTTGGATCGGTGGTATGC	0.453													11	67					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55145155	55145155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55145155G>A	uc003pcl.2	+	6	1333	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	340	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TGAAGACAGAGAGACTGTGTA	0.363													5	94					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55198719	55198719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55198719G>A	uc003pcm.1	+	3	379	c.293G>A	c.(292-294)GGA>GAA	p.G98E		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	98	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAACTGCTTGGAAAAAAATGT	0.294													8	118					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55623892	55623892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55623892C>T	uc003pcq.2	-	6	1838	c.1126G>A	c.(1126-1128)GGA>AGA	p.G376R	BMP5_uc011dxf.1_Intron	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	376					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCAGCGTATCCTTCTGGTGCT	0.269													6	75					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55638937	55638937	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55638937G>A	uc003pcq.2	-	4	1649	c.937C>T	c.(937-939)CGA>TGA	p.R313*	BMP5_uc011dxf.1_Nonsense_Mutation_p.R313*	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	313					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTCACGGATCGAAGAAGTACC	0.458													11	81					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55925560	55925560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:55925560C>T	uc003pcs.2	-	27	2618	c.2386G>A	c.(2386-2388)GTT>ATT	p.V796I	COL21A1_uc010jzz.2_Missense_Mutation_p.V181I|COL21A1_uc011dxg.1_Missense_Mutation_p.V169I|COL21A1_uc011dxh.1_Missense_Mutation_p.V181I|COL21A1_uc003pcr.2_Missense_Mutation_p.V153I	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	796					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCTGTGCAAACTTGTCGAATA	0.303													7	50					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57467106	57467106	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:57467106C>T	uc003pdx.2	+	12	1134	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	349					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		CTTAGAACATCCGTCACAGCT	0.413													4	44					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990952	63990952	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:63990952C>T	uc003peh.2	-	4	538	c.504G>A	c.(502-504)GTG>GTA	p.V168V	LGSN_uc003pei.2_Silent_p.V168V	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	168					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TATCACATATCACTCTTGCAG	0.458													7	77					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69666657	69666657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:69666657G>A	uc003pev.3	+	8	1929	c.1481G>A	c.(1480-1482)GGA>GAA	p.G494E	BAI3_uc010kak.2_Missense_Mutation_p.G494E	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	494	TSP type-1 4.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CAATGTGAAGGAACGGGCGAA	0.473													10	62					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69949036	69949036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:69949036C>T	uc003pev.3	+	20	3180	c.2732C>T	c.(2731-2733)TCC>TTC	p.S911F	BAI3_uc010kak.2_Missense_Mutation_p.S911F|BAI3_uc011dxx.1_Missense_Mutation_p.S117F|BAI3_uc003pex.1_Missense_Mutation_p.S41F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	911	Helical; Name=2; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTGAGAGATCCATAATACTA	0.363													16	163					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70071047	70071047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:70071047G>A	uc003pev.3	+	29	4330	c.3882G>A	c.(3880-3882)ATG>ATA	p.M1294I	BAI3_uc010kak.2_Missense_Mutation_p.M1294I|BAI3_uc011dxx.1_Missense_Mutation_p.M500I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1294	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGGCTGACATGGACATAGTCC	0.373													5	41					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70847596	70847596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:70847596G>A	uc003pfc.1	+	19	1520	c.1403G>A	c.(1402-1404)GGA>GAA	p.G468E	COL19A1_uc010kam.1_Missense_Mutation_p.G364E	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	468	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GGACTACCAGGATTTCCAGGG	0.388													7	106					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70877936	70877936	+	Missense_Mutation	SNP	G	A	A	rs149953250		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:70877936G>A	uc003pfc.1	+	38	2582	c.2465G>A	c.(2464-2466)CGA>CAA	p.R822Q		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	822				GIPFNERN -> VSCSRLKI (in Ref. 6; AAA36358).	cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TTTAATGAACGAAACGGCATG	0.234													5	73					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70886434	70886434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:70886434C>T	uc003pfc.1	+	42	2762	c.2645C>T	c.(2644-2646)CCC>CTC	p.P882L		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	882	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCAGCAGGTCCCCCAGGAATA	0.408													4	51					0	0	1	0	0
KHDC1	80759	broad.mit.edu	37	6	73951283	73951283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:73951283G>A	uc003pgo.2	-	5	1184	c.683C>T	c.(682-684)TCG>TTG	p.S228L	KHDC1_uc011dyl.1_Intron|KHDC1_uc003pgn.3_Missense_Mutation_p.S155L	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	228						integral to membrane	RNA binding			skin(1)	1						ATGGAAACCCGAACAACCAAT	0.493													7	93					0	0	1	0	0
DPPA5	340168	broad.mit.edu	37	6	74063900	74063900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:74063900G>A	uc003pgs.1	-	1	54	c.49C>T	c.(49-51)CCC>TCC	p.P17S		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	17					multicellular organismal development	cytoplasm	RNA binding				0						AGGTCTTCGGGAACTTTCACC	0.582													6	74					0	0	1	0	0
DPPA5	340168	broad.mit.edu	37	6	74063911	74063911	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:74063911C>A	uc003pgs.1	-	1	43	c.38G>T	c.(37-39)TGG>TTG	p.W13L		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	13					multicellular organismal development	cytoplasm	RNA binding				0						AACTTTCACCCACGGCGGGAT	0.582													6	65					0.000274275	0.000275707	1	1	0
DDX43	55510	broad.mit.edu	37	6	74123754	74123754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:74123754G>A	uc003pgw.2	+	13	1902	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N		NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	520	Helicase C-terminal.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						TCTGCATGGAGATAGAGAACA	0.348													7	70					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75899009	75899009	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:75899009C>T	uc003phs.2	-	7	913	c.747G>A	c.(745-747)ACG>ACA	p.T249T	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_5'Flank	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	249	VWFA 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						ATTTTCCATCCGTAATAATAA	0.383													8	65					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76023945	76023945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:76023945C>T	uc003pia.2	-	5	1976	c.1603G>A	c.(1603-1605)GTG>ATG	p.V535M	FILIP1_uc003phy.1_Missense_Mutation_p.V535M|FILIP1_uc003phz.2_Missense_Mutation_p.V436M|FILIP1_uc010kbe.2_Missense_Mutation_p.V538M|FILIP1_uc003pib.1_Missense_Mutation_p.V287M	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	535	Potential.									skin(3)|ovary(1)	4						CCTTGTTCCACCTTAAAATTT	0.294													3	23					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76657234	76657234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:76657234C>T	uc003pik.1	-	14	1971	c.1841G>A	c.(1840-1842)CGA>CAA	p.R614Q		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	614	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AAGATTGGATCGTAGATATGG	0.373													4	32					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76734968	76734968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:76734968C>T	uc003pik.1	-	5	635	c.505G>A	c.(505-507)GAA>AAA	p.E169K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	169					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GCAGATATTTCATCTTTTCTA	0.343													4	51					0	0	1	0	0
ELOVL4	6785	broad.mit.edu	37	6	80626362	80626362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:80626362C>T	uc003pja.3	-	6	1227	c.908G>A	c.(907-909)GGA>GAA	p.G303E	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	303					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	CTGCTTTTTTCCATTTTCTAT	0.343													5	45					0	0	1	0	0
ELOVL4	6785	broad.mit.edu	37	6	80626373	80626373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:80626373C>T	uc003pja.3	-	6	1216	c.897G>A	c.(895-897)ATG>ATA	p.M299I	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	299					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	CATTTTCTATCATGAGTTGTT	0.363													5	46					0	0	1	0	0
SNAP91	9892	broad.mit.edu	37	6	84417585	84417585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:84417585G>A	uc011dze.1	-	2	379	c.62C>T	c.(61-63)GCT>GTT	p.A21V	SNAP91_uc003pkb.2_5'UTR|SNAP91_uc003pkc.2_Missense_Mutation_p.A21V|SNAP91_uc003pkd.2_Missense_Mutation_p.A21V|SNAP91_uc003pka.2_Missense_Mutation_p.A21V|SNAP91_uc011dzf.1_5'UTR	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	21	ENTH.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TCTTGCTACAGCAGAGCCTGT	0.542													5	57					0	0	1	0	0
RIPPLY2	134701	broad.mit.edu	37	6	84567050	84567050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:84567050C>T	uc003pke.2	+	4	480	c.329C>T	c.(328-330)TCA>TTA	p.S110L	CYB5R4_uc003pkf.2_5'Flank	NM_001009994	NP_001009994	Q5TAB7	RIPP2_HUMAN	ripply2 protein	110	Ripply homology domain.				somite rostral/caudal axis specification	nucleus					0						GCCACAATTTCATTTTATGAA	0.323													9	102					0	0	1	0	0
KIAA1009	22832	broad.mit.edu	37	6	84896193	84896193	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:84896193T>C	uc010kbp.2	-	12	1355	c.1258A>G	c.(1258-1260)AAT>GAT	p.N420D	KIAA1009_uc003pkj.3_Missense_Mutation_p.N344D|KIAA1009_uc003pkk.2_Missense_Mutation_p.N420D|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	420					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		ATACTCTCATTTGTGGTCTTT	0.333													17	186					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725382	87725382	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:87725382C>T	uc003pli.2	+	2	1033	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	110	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CCTGCTCCATCCTCCACCTCT	0.562													12	100					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88854222	88854222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:88854222C>T	uc011dzq.1	-	2	4335	c.772G>A	c.(772-774)GAG>AAG	p.E258K	CNR1_uc010kbz.2_Missense_Mutation_p.E258K|CNR1_uc011dzr.1_Missense_Mutation_p.E258K|CNR1_uc011dzs.1_Missense_Mutation_p.E258K|CNR1_uc003pmq.3_Missense_Mutation_p.E258K|CNR1_uc011dzt.1_Missense_Mutation_p.E258K|CNR1_uc010kca.2_Missense_Mutation_p.E225K	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	258	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TGCAGTTTCTCGCAGTTCCAG	0.527													10	90					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93967994	93967994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:93967994C>T	uc003poe.2	-	11	2174	c.1933G>A	c.(1933-1935)GGT>AGT	p.G645S	EPHA7_uc003pof.2_Missense_Mutation_p.G640S|EPHA7_uc011eac.1_Missense_Mutation_p.G641S	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	645	Cytoplasmic (Potential).|ATP (By similarity).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CAGACTTCACCGAATTCTCCT	0.348													14	97					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93973581	93973581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:93973581G>A	uc003poe.2	-	9	2036	c.1795C>T	c.(1795-1797)CAT>TAT	p.H599Y	EPHA7_uc003pof.2_Missense_Mutation_p.H594Y|EPHA7_uc011eac.1_Missense_Mutation_p.H599Y	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	599	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CACTTACAATGAAAGTAAAGC	0.348													4	49					0	0	1	0	0
C6orf167	253714	broad.mit.edu	37	6	97702545	97702545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:97702545C>T	uc003ppb.2	-	10	1273	c.1007G>A	c.(1006-1008)AGA>AAA	p.R336K	C6orf167_uc011eaf.1_Missense_Mutation_p.R336K|C6orf167_uc010kcn.1_Missense_Mutation_p.R110K|C6orf167_uc010kco.1_Missense_Mutation_p.R72K|C6orf167_uc003ppc.2_Missense_Mutation_p.R336K	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	336					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		CATAGAGGATCTTCTTCGGTC	0.358													5	61					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100382357	100382357	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:100382357G>A	uc003pqh.1	-	5	939	c.624C>T	c.(622-624)TTC>TTT	p.F208F	MCHR2_uc003pqi.1_Silent_p.F208F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	208	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		AGGGTAGAGGGAAAAAAAAAG	0.284													10	77					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100841761	100841761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:100841761G>A	uc003pqj.3	-	10	1379	c.1172C>T	c.(1171-1173)TCG>TTG	p.S391L	SIM1_uc010kcu.2_Missense_Mutation_p.S391L	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	391	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GTGAAATCCCGAATACTGAAA	0.463													6	47					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102483364	102483364	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:102483364T>C	uc003pqp.3	+	14	2483	c.2234T>C	c.(2233-2235)GTT>GCT	p.V745A	GRIK2_uc003pqo.3_Missense_Mutation_p.V745A|GRIK2_uc010kcw.2_Missense_Mutation_p.V745A	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	745	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	ATCGAGTTTGTTACCCAGCGG	0.468													17	203					0	0	1	0	0
POPDC3	64208	broad.mit.edu	37	6	105609476	105609476	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:105609476G>A	uc003prb.2	-	2	711	c.309C>T	c.(307-309)ACC>ACT	p.T103T	uc003pqz.2_Intron|POPDC3_uc003pra.2_Intron	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	103						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				CTCGGGCAAAGGTTATGCTGC	0.433													20	266					0	0	1	0	0
SMPD2	6610	broad.mit.edu	37	6	109763470	109763470	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:109763470A>T	uc003pti.2	+	5	770	c.376A>T	c.(376-378)AGT>TGT	p.S126C	PPIL6_uc003ptg.3_5'Flank|PPIL6_uc010kdo.2_5'Flank|PPIL6_uc010kdp.2_5'Flank|PPIL6_uc003pth.1_5'Flank	NM_003080	NP_003071	O60906	NSMA_HUMAN	sphingomyelin phosphodiesterase 2, neutral	126					induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|sphingomyelin metabolic process	integral to plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity				0		all_cancers(87;1.1e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000144)|all_lung(197;0.0221)|Colorectal(196;0.0488)|Lung SC(18;0.0548)		Epithelial(106;0.0137)|all cancers(137;0.0188)|OV - Ovarian serous cystadenocarcinoma(136;0.0228)|BRCA - Breast invasive adenocarcinoma(108;0.0566)		GCTCCATCTAAGTGGCATGGT	0.577													6	68					0	0	1	0	0
MICAL1	64780	broad.mit.edu	37	6	109771616	109771616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:109771616C>T	uc003ptj.2	-	7	1332	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	MICAL1_uc003ptk.2_Missense_Mutation_p.D360N|MICAL1_uc010kdr.2_Intron|MICAL1_uc011eaq.1_Missense_Mutation_p.D379N	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	360					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		GCAGAGACATCAGGCTGCCCA	0.617													10	84					0	0	1	0	0
AKD1	221264	broad.mit.edu	37	6	109863281	109863281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:109863281G>A	uc003ptn.2	-	27	3396	c.3319C>T	c.(3319-3321)CTT>TTT	p.L1107F	AKD1_uc011eat.1_Missense_Mutation_p.L186F	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1107					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						CACTCAGAAAGAATTACTTCA	0.299													3	21					0	0	1	0	0
GPR6	2830	broad.mit.edu	37	6	110301234	110301234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:110301234C>T	uc011eaw.1	+	2	1099	c.919C>T	c.(919-921)CCG>TCG	p.P307S	GPR6_uc011eav.1_Missense_Mutation_p.P322S|GPR6_uc003ptu.2_Missense_Mutation_p.P307S	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	307	Extracellular (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		CCATGAGGACCCGGCGGTCTA	0.617													10	80					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110759998	110759998	+	Silent	SNP	G	A	A	rs138030296	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:110759998G>A	uc003puf.2	-	5	1303	c.1236C>T	c.(1234-1236)GTC>GTT	p.V412V	SLC22A16_uc003pue.2_Silent_p.V393V	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	412					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		TTCTCCTCCCGACCTTGTCCA	0.507													10	75					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110763562	110763562	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:110763562C>T	uc003puf.2	-	4	1135	c.1068G>A	c.(1066-1068)ACG>ACA	p.T356T	SLC22A16_uc003pue.2_Silent_p.T337T	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	356					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GTGTCCTTTTCGTAATGCTCC	0.393													14	115					0	0	1	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368494	111368494	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:111368494C>T	uc003puq.2	-	1	264	c.129G>A	c.(127-129)CTG>CTA	p.L43L		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						CAATGCAGCCCAGGATGGCCT	0.527													16	108					0	0	1	0	0
REV3L	5980	broad.mit.edu	37	6	111696990	111696990	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:111696990A>T	uc003puy.3	-	13	2891	c.2568T>A	c.(2566-2568)AAT>AAA	p.N856K	REV3L_uc003pux.3_Missense_Mutation_p.N778K|REV3L_uc003puz.3_Missense_Mutation_p.N778K	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	856					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TTTGTATAAAATTATCTTTTG	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	53					0	0	1	0	0
TUBE1	51175	broad.mit.edu	37	6	112392637	112392637	+	Missense_Mutation	SNP	G	A	A	rs17856920		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:112392637G>A	uc003pvq.2	-	12	1520	c.1406C>T	c.(1405-1407)CCC>CTC	p.P469L	TUBE1_uc003pvr.2_Missense_Mutation_p.P394L	NM_016262	NP_057346	Q9UJT0	TBE_HUMAN	tubulin, epsilon 1	469				P -> R (in Ref. 4; AAH31101).	centrosome cycle|microtubule-based movement|protein polymerization	microtubule|pericentriolar material	GTP binding|GTPase activity|structural constituent of cytoskeleton			ovary(1)	1		all_cancers(87;0.0101)|all_hematologic(75;0.000258)|Colorectal(196;0.0466)|all_epithelial(87;0.1)		all cancers(137;0.0217)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0636)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		GCTTAGTCTGGGTAAATCCTG	0.363													14	142					0	0	1	0	0
LAMA4	3910	broad.mit.edu	37	6	112452237	112452237	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:112452237G>A	uc003pvu.2	-	29	4210	c.3901C>T	c.(3901-3903)CAG>TAG	p.Q1301*	LAMA4_uc003pvv.2_Nonsense_Mutation_p.Q1294*|LAMA4_uc003pvt.2_Nonsense_Mutation_p.Q1294*	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	1301	Laminin G-like 3.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TCTACTGACTGAACTTTGATT	0.443													5	59					0	0	1	0	0
LAMA4	3910	broad.mit.edu	37	6	112522872	112522872	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:112522872T>A	uc003pvu.2	-	5	749	c.440A>T	c.(439-441)TAT>TTT	p.Y147F	LAMA4_uc003pvv.2_Missense_Mutation_p.Y147F|LAMA4_uc003pvt.2_Missense_Mutation_p.Y147F	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	147	Laminin EGF-like 2.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		ATTTTTCCTATAGCAGGATTC	0.358													17	234					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116757052	116757052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:116757052G>A	uc003pws.2	+	6	1615	c.1421G>A	c.(1420-1422)GGG>GAG	p.G474E	DSE_uc011ebg.1_Missense_Mutation_p.G493E|DSE_uc003pwt.2_Missense_Mutation_p.G474E|DSE_uc003pwu.2_Missense_Mutation_p.G141E	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	474					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GCTCTGTACGGGCCAAAGTAC	0.448													7	48					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116757789	116757789	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:116757789C>T	uc003pws.2	+	6	2352	c.2158C>T	c.(2158-2160)CTG>TTG	p.L720L	DSE_uc011ebg.1_Silent_p.L739L|DSE_uc003pwt.2_Silent_p.L720L|DSE_uc003pwu.2_Silent_p.L387L	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	720					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		TCACAAAATTCTGTTTGACCG	0.488													12	133					0	0	1	0	0
FAM26E	254228	broad.mit.edu	37	6	116836885	116836885	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:116836885G>A	uc003pwy.2	+	2	715	c.663G>A	c.(661-663)AAG>AAA	p.K221K	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	221						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		ATGCACAAAAGGAGAAGGAGC	0.433													6	61					0	0	1	0	0
RWDD1	51389	broad.mit.edu	37	6	116914170	116914170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:116914170C>T	uc003pxd.2	+	7	801	c.638C>T	c.(637-639)TCT>TTT	p.S213F	RWDD1_uc003pxb.2_Missense_Mutation_p.S117F|RWDD1_uc003pxc.2_Missense_Mutation_p.S117F	NM_015952	NP_057036	Q9H446	RWDD1_HUMAN	RWD domain containing 1 isoform a	213							protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.0312)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)|Epithelial(106;0.161)		GTAGATGAGTCTTTGTTCCAA	0.393													3	60					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113480	117113480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117113480G>A	uc003pxj.1	-	6	2628	c.2606C>T	c.(2605-2607)GCT>GTT	p.A869V	GPRC6A_uc003pxk.1_Missense_Mutation_p.A694V|GPRC6A_uc003pxl.1_Missense_Mutation_p.A798V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	869	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		GTCCAGTGAAGCAGGACTCAG	0.453													3	57					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117114301	117114301	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117114301G>A	uc003pxj.1	-	6	1807	c.1785C>T	c.(1783-1785)ATC>ATT	p.I595I	GPRC6A_uc003pxk.1_Silent_p.I420I|GPRC6A_uc003pxl.1_Silent_p.I524I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	595	Helical; Name=1; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TCAGGAGTAGGATGGCCAAGG	0.438													6	74					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117127875	117127875	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117127875C>T	uc003pxj.1	-	3	1015	c.993G>A	c.(991-993)GGG>GGA	p.G331G	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Silent_p.G331G	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	331	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AGGATATATTCCCTCTTCTAA	0.403													4	76					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117638418	117638418	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117638418T>C	uc003pxp.1	-	38	6222	c.6023A>G	c.(6022-6024)AAC>AGC	p.N2008S	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2008	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCAGAATGTTGGGATGATT	0.448			T	GOPC|ROS1	glioblastoma|NSCLC								6	102					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117647417	117647417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117647417C>T	uc003pxp.1	-	33	5726	c.5527G>A	c.(5527-5529)GGA>AGA	p.G1843R	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1843	Fibronectin type-III 9.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCACTGATTCCACTATATTCA	0.353			T	GOPC|ROS1	glioblastoma|NSCLC								14	92					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117710875	117710875	+	Missense_Mutation	SNP	C	T	T	rs140178288	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:117710875C>T	uc003pxp.1	-	12	1596	c.1397G>A	c.(1396-1398)CGA>CAA	p.R466Q	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	466	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GTAAATGATTCGCTTGGCTTG	0.493			T	GOPC|ROS1	glioblastoma|NSCLC								3	35					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119611922	119611922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:119611922C>T	uc003pym.1	-	5	1265	c.823G>A	c.(823-825)GAA>AAA	p.E275K	MAN1A1_uc010kei.1_Missense_Mutation_p.E298K	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	275	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		ACAGAAATTTCAGCATTCTAT	0.294													6	43					0	0	1	0	0
RNF217	154214	broad.mit.edu	37	6	125397950	125397950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:125397950C>T	uc003pzs.2	+	6	891	c.553C>T	c.(553-555)CGC>TGC	p.R185C	RNF217_uc003pzr.2_Missense_Mutation_p.R242C|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	185					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		ATGCAAATATCGCTACCTCCC	0.438													10	112					0	0	1	0	0
NCOA7	135112	broad.mit.edu	37	6	126210353	126210353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:126210353C>T	uc010kes.2	+	11	1602	c.1153C>T	c.(1153-1155)CCC>TCC	p.P385S	NCOA7_uc003qae.3_Missense_Mutation_p.P385S|NCOA7_uc003qah.2_Missense_Mutation_p.P374S|NCOA7_uc003qai.2_Missense_Mutation_p.P385S|NCOA7_uc010ket.2_Missense_Mutation_p.P270S	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	385					cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		CCATGGTTCTCCCACAGTGAC	0.458													8	28					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127797356	127797356	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:127797356G>A	uc003qbd.2	-	6	2680	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	605	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CCAGTTCGACGATTTTCCTGC	0.607													12	240					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128294253	128294253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:128294253C>T	uc003qbk.2	-	29	4547	c.4180G>A	c.(4180-4182)GAA>AAA	p.E1394K	PTPRK_uc003qbj.2_Missense_Mutation_p.E1395K|PTPRK_uc010kfc.2_Missense_Mutation_p.E1401K|PTPRK_uc011ebu.1_Missense_Mutation_p.E1417K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1394	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TTCACCATTTCAACAACGATG	0.443													12	123					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128388791	128388791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:128388791C>T	uc003qbk.2	-	12	2397	c.2030G>A	c.(2029-2031)GGA>GAA	p.G677E	PTPRK_uc003qbj.2_Missense_Mutation_p.G677E|PTPRK_uc010kfc.2_Missense_Mutation_p.G677E|PTPRK_uc011ebu.1_Missense_Mutation_p.G677E|PTPRK_uc003qbl.1_Missense_Mutation_p.G547E|PTPRK_uc011ebv.1_Missense_Mutation_p.G677E	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	677	Extracellular (Potential).|Fibronectin type-III 4.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AGGTAGGTTTCCCGGGGGGAG	0.542													6	75					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128505667	128505667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:128505667C>T	uc003qbk.2	-	7	1439	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	PTPRK_uc003qbj.2_Missense_Mutation_p.E358K|PTPRK_uc010kfc.2_Missense_Mutation_p.E358K|PTPRK_uc011ebu.1_Missense_Mutation_p.E358K|PTPRK_uc003qbl.1_Missense_Mutation_p.E228K|PTPRK_uc011ebv.1_Missense_Mutation_p.E358K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	358	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ATCTCATATTCGGTATCTGGA	0.458													15	116					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129371212	129371212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:129371212C>T	uc003qbn.2	+	2	367	c.262C>T	c.(262-264)CAA>TAA	p.Q88*	LAMA2_uc003qbo.2_Nonsense_Mutation_p.Q88*	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	88	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AATCTGCAATCAAAACAGCAG	0.448													6	74					0	0	1	0	0
SAMD3	154075	broad.mit.edu	37	6	130465694	130465694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:130465694C>T	uc003qbv.2	-	13	1860	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	SAMD3_uc003qbx.2_Missense_Mutation_p.E512K|SAMD3_uc003qbw.2_Missense_Mutation_p.E512K	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	512										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		AATCCTACTTCGTTTTCCTTT	0.368													4	34					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762527	130762527	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:130762527G>A	uc003qca.2	+	3	1831	c.960G>A	c.(958-960)AGG>AGA	p.R320R	TMEM200A_uc010kfh.2_Silent_p.R320R|TMEM200A_uc010kfi.2_Silent_p.R320R|TMEM200A_uc003qcb.2_Silent_p.R320R	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	320	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GTAGGTCAAGGAATTTGTCAA	0.428													7	52					0	0	1	0	0
TAAR6	319100	broad.mit.edu	37	6	132891890	132891890	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:132891890T>C	uc011eck.1	+	1	430	c.430T>C	c.(430-432)TTC>CTC	p.F144L		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	144	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TCCTACCAAGTTCACCGTATC	0.498													22	248					0	0	1	0	0
TAAR6	319100	broad.mit.edu	37	6	132891930	132891930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:132891930G>A	uc011eck.1	+	1	470	c.470G>A	c.(469-471)TGG>TAG	p.W157*		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	157	Helical; Name=4; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		AGCGTGTCCTGGATCCTGCCC	0.502													17	226					0	0	1	0	0
TAAR1	134864	broad.mit.edu	37	6	132966495	132966495	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:132966495G>A	uc003qdm.1	-	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	216	Cytoplasmic (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	GTTCTTTAGCGATAAGATATA	0.333													4	41					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133078573	133078573	+	Missense_Mutation	SNP	G	A	A	rs149351884		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:133078573G>A	uc003qdt.2	-	2	337	c.326C>T	c.(325-327)CCG>CTG	p.P109L	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Missense_Mutation_p.P109L|VNN2_uc003qdv.2_Missense_Mutation_p.P56L	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	109	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		GTCTTGACACGGAATCCAGTT	0.418													10	50					0	0	1	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349785	134349785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:134349785C>T	uc003qem.1	-	2	1349	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	393	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GTTTCCTGGTCCATAAATCAC	0.448													12	116					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136594272	136594272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:136594272G>A	uc003qgx.1	-	7	2159	c.1906C>T	c.(1906-1908)CAG>TAG	p.Q636*	BCLAF1_uc003qgw.1_Nonsense_Mutation_p.Q463*|BCLAF1_uc003qgy.1_Nonsense_Mutation_p.Q634*|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Nonsense_Mutation_p.Q634*	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	636					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTGGCTTTCTGATACGAAGTG	0.388													12	220					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	137041714	137041714	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:137041714C>T	uc003qhc.2	-	2	823	c.462G>A	c.(460-462)GTG>GTA	p.V154V	MAP3K5_uc011edk.1_5'UTR|MAP3K5_uc010kgw.1_Silent_p.V154V	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	154					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		CGCTCATCTCCACCACCGCAA	0.443													8	36					0	0	1	0	0
PBOV1	59351	broad.mit.edu	37	6	138539186	138539186	+	Missense_Mutation	SNP	G	A	A	rs35031653		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:138539186G>A	uc003qhv.2	-	1	442	c.347C>T	c.(346-348)ACC>ATC	p.T116I	KIAA1244_uc003qhu.2_Intron	NM_021635	NP_067648	Q9GZY1	PBOV1_HUMAN	prostate and breast cancer overexpressed 1	116						cytoplasm|nucleus					0	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00055)|GBM - Glioblastoma multiforme(68;0.000674)		CAGACCTAGGGTCTGAGTTAA	0.398													7	67					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584019	138584019	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:138584019T>A	uc003qhu.2	+	12	1399	c.1399T>A	c.(1399-1401)TGG>AGG	p.W467R		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	467					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TGGGGCTGAGTGGAGCCGAGA	0.617													3	18					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093092	143093092	+	Silent	SNP	G	A	A	rs35448483		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:143093092G>A	uc003qjd.2	-	5	3527	c.2784C>T	c.(2782-2784)TCC>TCT	p.S928S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	928					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CGGGGAGCTGGGAAAGGGTCT	0.547													4	55					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	145051503	145051503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:145051503G>A	uc003qkt.2	+	53	7912	c.7820G>A	c.(7819-7821)CGG>CAG	p.R2607Q		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2607	Spectrin 18.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GCCCTGAGACGGGAGTTAAAG	0.458													9	93					0	0	1	0	0
SHPRH	257218	broad.mit.edu	37	6	146276180	146276180	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:146276180G>A	uc003qlf.2	-	2	678	c.279C>T	c.(277-279)TCC>TCT	p.S93S	SHPRH_uc003qld.2_Silent_p.S93S|SHPRH_uc003qle.2_Silent_p.S93S|SHPRH_uc003qlg.1_5'UTR|SHPRH_uc003qlj.1_Intron|SHPRH_uc003qlk.1_Silent_p.S93S	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	93					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CAGACAAAGGGGAAAAAATAC	0.368													4	91					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146350776	146350776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:146350776G>A	uc010khw.1	+	2	593	c.123G>A	c.(121-123)ATG>ATA	p.M41I	GRM1_uc010khu.1_Missense_Mutation_p.M41I|GRM1_uc010khv.1_Missense_Mutation_p.M41I|GRM1_uc003qll.2_Missense_Mutation_p.M41I|GRM1_uc011edz.1_Missense_Mutation_p.M41I|GRM1_uc011eea.1_Missense_Mutation_p.M41I	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	41	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TGGCCAGAATGGACGGAGATG	0.587													14	127					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146350831	146350831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:146350831G>A	uc010khw.1	+	2	648	c.178G>A	c.(178-180)GAG>AAG	p.E60K	GRM1_uc010khu.1_Missense_Mutation_p.E60K|GRM1_uc010khv.1_Missense_Mutation_p.E60K|GRM1_uc003qll.2_Missense_Mutation_p.E60K|GRM1_uc011edz.1_Missense_Mutation_p.E60K|GRM1_uc011eea.1_Missense_Mutation_p.E60K	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	60	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GCCTCCGGCCGAGAAAGTGCC	0.592													4	52					0	0	1	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149777980	149777980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:149777980G>A	uc003qmn.1	-	3	572	c.502C>T	c.(502-504)CGC>TGC	p.R168C	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Missense_Mutation_p.R168C|ZC3H12D_uc010kid.2_Missense_Mutation_p.R168C	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	168						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TGCACCTTGCGGGACGGCGTG	0.682													7	89					0	0	1	0	0
RAET1K	646024	broad.mit.edu	37	6	150322729	150322729	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:150322729C>T	uc003qnq.2	-	2		c.148G>A				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						ATCCACCAGGCCTTGAACTTC	0.453													13	89					0	0	1	0	0
C6orf97	80129	broad.mit.edu	37	6	151936716	151936716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:151936716G>A	uc003qol.2	+	10	1938	c.1849G>A	c.(1849-1851)GAG>AAG	p.E617K		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	617	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		TGAGGCTAAGGAGAATAAAGA	0.403													6	77					0	0	1	0	0
ESR1	2099	broad.mit.edu	37	6	152201885	152201885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152201885G>A	uc003qom.3	+	5	1109	c.739G>A	c.(739-741)GAA>AAA	p.E247K	ESR1_uc010kin.2_Missense_Mutation_p.E247K|ESR1_uc010kio.2_Missense_Mutation_p.E249K|ESR1_uc010kip.2_Missense_Mutation_p.E247K|ESR1_uc003qon.3_Missense_Mutation_p.E247K|ESR1_uc003qoo.3_Missense_Mutation_p.E247K|ESR1_uc010kiq.2_Missense_Mutation_p.R3Q|ESR1_uc010kir.2_Intron|ESR1_uc011eet.1_Intron|ESR1_uc011eeu.1_RNA|ESR1_uc011eev.1_Intron|ESR1_uc011eew.1_Intron|ESR1_uc010kis.2_Missense_Mutation_p.E28K|ESR1_uc011eex.1_Missense_Mutation_p.E28K	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	247	Nuclear receptor.|Mediates interaction with DNTTIP2.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	TAAATGCTACGAAGTGGGAAT	0.542													5	40					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152453312	152453312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152453312G>A	uc010kiw.2	-	144	26641	c.26039C>T	c.(26038-26040)ACC>ATC	p.T8680I	SYNE1_uc010kiv.2_Missense_Mutation_p.T3204I|SYNE1_uc003qos.3_Missense_Mutation_p.T3204I|SYNE1_uc003qot.3_Missense_Mutation_p.T8632I|SYNE1_uc003qou.3_Missense_Mutation_p.T8680I|SYNE1_uc003qop.3_Missense_Mutation_p.T865I|SYNE1_uc011eez.1_Missense_Mutation_p.T882I|SYNE1_uc003qoq.3_Missense_Mutation_p.T882I|SYNE1_uc003qor.3_Missense_Mutation_p.T1603I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8680	Ser-rich.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGACCCTGAGGTGTCCAGTTC	0.507										HNSCC(10;0.0054)			16	161					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152708490	152708490	+	Nonsense_Mutation	SNP	C	T	T	rs145493303		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152708490C>T	uc010kiw.2	-	54	8806	c.8204G>A	c.(8203-8205)TGG>TAG	p.W2735*	SYNE1_uc003qot.3_Nonsense_Mutation_p.W2742*|SYNE1_uc003qou.3_Nonsense_Mutation_p.W2735*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.W2718*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2735	Cytoplasmic (Potential).|HAT 5.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAGTCATTCCATTGGCTAAT	0.373										HNSCC(10;0.0054)			12	63					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152720830	152720830	+	Silent	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152720830T>G	uc010kiw.2	-	48	7760	c.7158A>C	c.(7156-7158)ATA>ATC	p.I2386I	SYNE1_uc003qot.3_Silent_p.I2393I|SYNE1_uc003qou.3_Silent_p.I2386I|SYNE1_uc010kjb.1_Silent_p.I2369I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2386	Spectrin 3.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CATGTTTCTTTATCAGACCAG	0.507										HNSCC(10;0.0054)			12	120					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152755059	152755059	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152755059C>T	uc010kiw.2	-	34	4934	c.4332G>A	c.(4330-4332)GTG>GTA	p.V1444V	SYNE1_uc003qot.3_Silent_p.V1451V|SYNE1_uc003qou.3_Silent_p.V1444V|SYNE1_uc010kjb.1_Silent_p.V1427V|SYNE1_uc003qow.2_Silent_p.V739V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1444	Potential.|HAT 3.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACTTGGTTTTCACCATTTCCA	0.338										HNSCC(10;0.0054)			4	13					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152776591	152776591	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152776591C>T	uc010kiw.2	-	24	3464	c.2862G>A	c.(2860-2862)GGG>GGA	p.G954G	SYNE1_uc003qot.3_Silent_p.G961G|SYNE1_uc003qou.3_Silent_p.G954G|SYNE1_uc010kjb.1_Silent_p.G937G|SYNE1_uc003qow.2_Silent_p.G249G|SYNE1_uc003qox.1_Silent_p.G470G|SYNE1_uc003qoz.2_Silent_p.G386G|SYNE1_uc003qoy.2_Silent_p.G521G	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	954	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTCTGGATCCCCCTTTTCCT	0.507										HNSCC(10;0.0054)			5	60					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152804348	152804348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152804348G>A	uc010kiw.2	-	14	1824	c.1222C>T	c.(1222-1224)CCT>TCT	p.P408S	SYNE1_uc003qot.3_Missense_Mutation_p.P415S|SYNE1_uc003qou.3_Missense_Mutation_p.P408S|SYNE1_uc010kjb.1_Missense_Mutation_p.P391S|SYNE1_uc003qpa.1_Missense_Mutation_p.P408S|SYNE1_uc003qox.1_5'UTR	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	408	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGAGGTGCAGGAAGAGATTTA	0.423										HNSCC(10;0.0054)			5	71					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152831412	152831412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152831412G>A	uc010kiw.2	-	8	1099	c.497C>T	c.(496-498)CCA>CTA	p.P166L	SYNE1_uc003qot.3_Missense_Mutation_p.P173L|SYNE1_uc003qou.3_Missense_Mutation_p.P166L|SYNE1_uc010kjb.1_Missense_Mutation_p.P166L|SYNE1_uc003qpa.1_Missense_Mutation_p.P166L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	166	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTACTTGGTGGGCTGGGAGT	0.488										HNSCC(10;0.0054)			4	86					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152847286	152847286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:152847286C>T	uc010kiw.2	-	5	756	c.154G>A	c.(154-156)GAT>AAT	p.D52N	SYNE1_uc003qot.3_Missense_Mutation_p.D52N|SYNE1_uc003qou.3_Missense_Mutation_p.D52N|SYNE1_uc010kjb.1_Missense_Mutation_p.D52N|SYNE1_uc003qpa.1_Missense_Mutation_p.D52N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	52	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCAAAAAGATCGTCCACCACC	0.343										HNSCC(10;0.0054)			5	68					0	0	1	0	0
MYCT1	80177	broad.mit.edu	37	6	153043328	153043328	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:153043328C>T	uc003qpd.3	+	2	656	c.648C>T	c.(646-648)GGC>GGT	p.G216G	MYCT1_uc010kjc.1_Silent_p.G168G|MYCT1_uc003qpc.3_Silent_p.G216G	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	216						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		TTCGAGTGGGCCTTTCAACAC	0.512													7	101					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155485632	155485632	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:155485632G>A	uc003qqb.2	+	10	3385	c.2112G>A	c.(2110-2112)GGG>GGA	p.G704G	TIAM2_uc003qqe.2_Silent_p.G704G|TIAM2_uc010kjj.2_Silent_p.G237G|TIAM2_uc003qqf.2_Silent_p.G56G|TIAM2_uc011efl.1_Silent_p.G16G|TIAM2_uc003qqg.2_Silent_p.G16G	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	704					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TACAAGGTGGGGAGTTACCGA	0.537													9	154					0	0	1	0	0
ARID1B	57492	broad.mit.edu	37	6	157405921	157405921	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:157405921C>T	uc003qqn.2	+	5	2102	c.1950C>T	c.(1948-1950)TCC>TCT	p.S650S	ARID1B_uc003qqo.2_Silent_p.S663S|ARID1B_uc003qqp.2_Silent_p.S650S|ARID1B_uc003qqq.1_Silent_p.S92S	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	708	Ser-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CGCCTTTCTCCCCACATGCGT	0.617													10	112					0	0	1	0	0
ZDHHC14	79683	broad.mit.edu	37	6	158014138	158014139	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:158014138_158014139CC>TT	uc003qqt.2	+	3	1022_1023	c.525_526CC>TT	c.(523-528)CCCCCT>CCTTCT	p.P176S	ZDHHC14_uc003qqs.2_Missense_Mutation_p.P176S|ZDHHC14_uc010kjm.1_Missense_Mutation_p.P71S	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	176	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		TTTTCCGGCCCCCTCGCGCCTC	0.599													9	71					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158484827	158484827	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:158484827C>T	uc003qqx.1	+	9	1207	c.1132C>T	c.(1132-1134)CAG>TAG	p.Q378*	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Nonsense_Mutation_p.Q378*|SYNJ2_uc003qqy.1_Nonsense_Mutation_p.Q91*|SYNJ2_uc011efn.1_Nonsense_Mutation_p.Q306*|SYNJ2_uc010kjo.1_Nonsense_Mutation_p.Q327*|SYNJ2_uc003qqz.1_5'UTR	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	378	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CCTAAGTTTTCAGAAAGGCAC	0.488													12	176					0	0	1	0	0
TULP4	56995	broad.mit.edu	37	6	158882728	158882728	+	Silent	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:158882728G>T	uc003qrf.2	+	6	2350	c.993G>T	c.(991-993)GGG>GGT	p.G331G	TULP4_uc011efo.1_Silent_p.G331G|TULP4_uc003qrg.2_Silent_p.G331G	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	331					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		ATGTTCGTGGGGAGCACATCT	0.473													11	101					2.80697e-09	2.83715e-09	1	1	0
TULP4	56995	broad.mit.edu	37	6	158914729	158914729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:158914729C>T	uc003qrf.2	+	10	3113	c.1756C>T	c.(1756-1758)CCT>TCT	p.P586S	TULP4_uc003qrg.2_Missense_Mutation_p.P586S	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	586					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		GAGAGAGTTTCCTTTTGAAGA	0.667													7	94					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159654316	159654316	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:159654316C>T	uc010kjv.2	+	11	2972	c.2772C>T	c.(2770-2772)CCC>CCT	p.P924P	FNDC1_uc010kjw.1_Silent_p.P809P	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	924						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGAAGGAACCCATCCCAGAGA	0.607													5	37					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159682262	159682262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:159682262G>A	uc010kjv.2	+	19	5415	c.5215G>A	c.(5215-5217)GGA>AGA	p.G1739R		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1739	Fibronectin type-III 5.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TCATGGCTACGGACCTATCAG	0.333													5	65					0	0	1	0	0
SLC22A2	6582	broad.mit.edu	37	6	160664719	160664719	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:160664719G>A	uc003qtf.2	-	7	1334	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	SLC22A2_uc003qte.1_Silent_p.F388F	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	388	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		AGGCAGCTGGGAATTCAACCA	0.552													7	92					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160978488	160978488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:160978488C>T	uc003qtl.2	-	30	4867	c.4747G>A	c.(4747-4749)GAA>AAA	p.E1583K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4091	Kringle 36.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ACACCTGATTCTGTTTCTGAG	0.483													13	125					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160978564	160978564	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:160978564C>T	uc003qtl.2	-	30	4791	c.4671G>A	c.(4669-4671)GGG>GGA	p.G1557G		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4065	Kringle 36.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	AGGGTTGTTTCCCAGAATCTG	0.507													10	85					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161016404	161016404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:161016404C>T	uc003qtl.2	-	22	3571	c.3451G>A	c.(3451-3453)GAG>AAG	p.E1151K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3659	Kringle 32.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GAAGAAGCCTCTGTGCTTGGA	0.493													9	99					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161134085	161134085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:161134085C>T	uc003qtm.3	+	5	538	c.475C>T	c.(475-477)CCG>TCG	p.P159S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	159	Kringle 1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGACAACGATCCGCAGGGGCC	0.483													9	132					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161160173	161160173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:161160173G>A	uc003qtm.3	+	16	2014	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	651	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GCATGTTCAGGAAATAGAAGT	0.498													6	94					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161173178	161173178	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:161173178C>T	uc003qtm.3	+	18	2220	c.2157C>T	c.(2155-2157)GCC>GCT	p.A719A		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	719	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TCAAGGAAGCCCAGCTCCCTG	0.468													4	42					0	0	1	0	0
PARK2	5071	broad.mit.edu	37	6	161771215	161771215	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:161771215C>T	uc003qtx.3	-	12	1448	c.1314G>A	c.(1312-1314)CAG>CAA	p.Q438Q	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Silent_p.Q247Q|PARK2_uc003qtw.3_3'UTR|PARK2_uc003qty.3_Silent_p.Q410Q|PARK2_uc003qtz.3_Silent_p.Q289Q|PARK2_uc011egf.1_Silent_p.Q112Q	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	438	RING-type 2.				aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		TGCACTGGGGCTGCGGACACT	0.617													6	34					0	0	1	0	0
PDE10A	10846	broad.mit.edu	37	6	165801865	165801865	+	Silent	SNP	G	A	A	rs139267725		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:165801865G>A	uc003qun.2	-	18	1945	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.F498F|PDE10A_uc003quo.2_Silent_p.F578F	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	568					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GAGGGTGGTCGAACTTCTGCA	0.537													10	103					0	0	1	0	0
PDE10A	10846	broad.mit.edu	37	6	165801887	165801887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:165801887C>T	uc003qun.2	-	18	1923	c.1682G>A	c.(1681-1683)AGT>AAT	p.S561N	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.S491N|PDE10A_uc003quo.2_Missense_Mutation_p.S571N	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	561					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GTAGCTGTTACTGAAGCCCCT	0.507													9	117					0	0	1	0	0
T	6862	broad.mit.edu	37	6	166571848	166571848	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:166571848G>A	uc003quu.1	-	9	1756	c.1263C>T	c.(1261-1263)GGC>GGT	p.G421G	T_uc003qut.1_Silent_p.G422G|T_uc003quv.1_Silent_p.G363G	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	421					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		CTATGAGGCGGCCTTGGGCTG	0.632									Chordoma_Familial_Clustering_of				13	208					0	0	1	0	0
T	6862	broad.mit.edu	37	6	166580193	166580193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:166580193G>A	uc003quu.1	-	3	851	c.358C>T	c.(358-360)CCC>TCC	p.P120S	T_uc003qut.1_Missense_Mutation_p.P120S|T_uc003quv.1_Missense_Mutation_p.P120S	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	120	T-box.				anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		ACGCAGCTGGGCGCCTGCGGC	0.632									Chordoma_Familial_Clustering_of				7	86					0	0	1	0	0
TCP10L2	401285	broad.mit.edu	37	6	167590488	167590488	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:167590488T>C	uc010kkp.2	+	4	495	c.364T>C	c.(364-366)TTG>CTG	p.L122L		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	122											0						CTTTTAGGCATTGGAACCTGC	0.388													7	158					0	0	1	0	0
TTLL2	83887	broad.mit.edu	37	6	167754833	167754833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:167754833C>T	uc003qvs.1	+	3	1533	c.1445C>T	c.(1444-1446)GCT>GTT	p.A482V	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	482					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CGTCCTGAAGCTGCACCTGCC	0.517													8	128					0	0	1	0	0
PRKAR1B	5575	broad.mit.edu	37	7	751023	751023	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:751023G>A	uc003siu.1	-	3	226	c.120C>T	c.(118-120)ATC>ATT	p.I40I	PRKAR1B_uc003siv.2_Silent_p.I40I|PRKAR1B_uc003siw.1_Silent_p.I40I	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	40	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		CGGGCTTGGAGATGCAGAGGT	0.637													12	129					0	0	1	0	0
GPER	2852	broad.mit.edu	37	7	1131671	1131671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:1131671G>A	uc010ksd.1	+	2	696	c.307G>A	c.(307-309)GTG>ATG	p.V103M	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.V103M|GPER_uc003ska.1_Missense_Mutation_p.V103M|GPER_uc003skb.2_Missense_Mutation_p.V103M	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	103	Helical; Name=2; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		CAACCTGGCGGTGGCGGACCT	0.577													16	91					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1478579	1478579	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:1478579G>A	uc003skj.3	-	10	2166	c.2019C>T	c.(2017-2019)CTC>CTT	p.L673L	MICALL2_uc003skh.3_5'UTR|MICALL2_uc003ski.3_Silent_p.L160L	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	673						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		CACAAACGTCGAGGCTGGCAG	0.672													12	35					0	0	1	0	0
IQCE	23288	broad.mit.edu	37	7	2638194	2638194	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:2638194C>T	uc003smo.3	+	17	1720	c.1536C>T	c.(1534-1536)TCC>TCT	p.S512S	IQCE_uc010ksm.1_Silent_p.S512S|IQCE_uc003sml.1_Silent_p.S512S|IQCE_uc011jvy.1_Silent_p.S496S|IQCE_uc011jvz.1_Silent_p.S447S|IQCE_uc003smk.3_Silent_p.S496S|IQCE_uc003smn.3_Silent_p.S447S	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	512											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		GGCCCCGCTCCCCCTGCTCTG	0.701													8	63					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2949716	2949716	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:2949716G>A	uc003smv.2	-	24	3632	c.3228C>T	c.(3226-3228)ATC>ATT	p.I1076I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1076	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CACACACCCGGATGAAGAGCA	0.587			Mis		DLBCL								14	213					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2979457	2979458	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:2979457_2979458CC>TT	uc003smv.2	-	6	1193_1194	c.789_790GG>AA	c.(787-792)AAGGAG>AAAAAG	p.E264K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	264	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AGAACCTGCTCCTTCTTGGGCC	0.51			Mis		DLBCL								14	183					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4119157	4119157	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:4119157C>T	uc003smx.2	+	22	3404	c.3265C>T	c.(3265-3267)CAG>TAG	p.Q1089*	SDK1_uc010kso.2_Nonsense_Mutation_p.Q365*	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1089	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CGCCACCCTTCAGTTCCGGCC	0.562													19	171					0	0	1	0	0
FOXK1	221937	broad.mit.edu	37	7	4800889	4800889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:4800889C>T	uc003snc.1	+	8	1901	c.1891C>T	c.(1891-1893)CCC>TCC	p.P631S	FOXK1_uc003sna.1_Missense_Mutation_p.P468S	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	631					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		GCATGCGGTTCCCACGAACAG	0.637													4	48					0	0	1	0	0
RADIL	55698	broad.mit.edu	37	7	4839027	4839027	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:4839027G>A	uc003snj.1	-	15	3383	c.3210C>T	c.(3208-3210)TTC>TTT	p.F1070F	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Silent_p.F575F|RADIL_uc011jwc.1_Silent_p.F830F|RADIL_uc011jwd.1_RNA|RADIL_uc003snh.1_Silent_p.F366F	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	1070					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		GGGGCGTGCGGAAATGGATCT	0.632													15	103					0	0	1	0	0
PAPOLB	56903	broad.mit.edu	37	7	4900113	4900113	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:4900113C>T	uc003snk.2	-	1	1513	c.1329G>A	c.(1327-1329)GGG>GGA	p.G443G	RADIL_uc003sng.1_Intron|RADIL_uc011jwd.1_Intron|RADIL_uc003snj.1_Intron	NM_020144	NP_064529	Q9NRJ5	PAPOB_HUMAN	poly(A) polymerase beta (testis specific)	442					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.089)|OV - Ovarian serous cystadenocarcinoma(56;2.06e-14)		GCTTTTTTAGCCCTAACCCAA	0.378													11	143					0	0	1	0	0
RADIL	55698	broad.mit.edu	37	7	4917611	4917611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:4917611C>T	uc003snj.1	-	2	333	c.160G>A	c.(160-162)GAG>AAG	p.E54K	RADIL_uc003sng.1_RNA|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	54					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		GTGGAGAGCTCGGCGGGGTCA	0.647													4	19					0	0	1	0	0
ACTB	60	broad.mit.edu	37	7	5567912	5567913	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:5567912_5567913CC>TT	uc003sos.3	-	3	837_838	c.801_802GG>AA	c.(799-804)CTGGGC>CTAAGC	p.G268S	ACTB_uc003sor.3_Missense_Mutation_p.G146S|ACTB_uc003sot.3_Missense_Mutation_p.G268S|ACTB_uc003soq.3_Missense_Mutation_p.G146S|ACTB_uc010ksy.2_Missense_Mutation_p.G146S	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	268					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CTCCACTCACCCAGGAAGGAAG	0.609													13	109					0	0	1	0	0
RNF216	54476	broad.mit.edu	37	7	5662690	5662690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:5662690G>A	uc003soy.1	-	17	2592	c.2402C>T	c.(2401-2403)GCC>GTC	p.A801V	RNF216_uc010ksz.1_Missense_Mutation_p.A423V|RNF216_uc010kta.1_Missense_Mutation_p.A423V|RNF216_uc011jwj.1_Missense_Mutation_p.A423V|RNF216_uc003sox.1_Missense_Mutation_p.A858V	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	801	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		GTGCGCGAAGGCATAGGGTGG	0.667													12	126					0	0	1	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353													24	133					0	0	1	0	0
MEOX2	4223	broad.mit.edu	37	7	15652141	15652141	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:15652141C>T	uc003stc.2	-	3	1067	c.786G>A	c.(784-786)GTG>GTA	p.V262V	MEOX2_uc011jxw.1_Silent_p.V262V	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	262					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TTCCCTTTTTCACATTCACCA	0.517													15	126					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066902	18066902	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:18066902G>A	uc003stz.2	-	1	585	c.504C>T	c.(502-504)GTC>GTT	p.V168V		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	168					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CATCTGGCGAGACAATAATGC	0.448													5	59					0	0	1	0	0
TMEM196	256130	broad.mit.edu	37	7	19765281	19765281	+	Silent	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:19765281A>C	uc011jyg.1	-	3	400	c.315T>G	c.(313-315)CTT>CTG	p.L105L	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	111	Helical; (Potential).					integral to membrane					0						ACATGGAGGCAAGGTGCAGTG	0.522													9	71					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21775302	21775302	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:21775302C>T	uc003svc.2	+	47	7537	c.7506C>T	c.(7504-7506)TTC>TTT	p.F2502F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2502	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTAGATATTTCATGGAGTTGT	0.333									Kartagener_syndrome				3	5					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21924006	21924006	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:21924006A>C	uc003svc.2	+	77	12537	c.12506A>C	c.(12505-12507)GAA>GCA	p.E4169A		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4169					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTGTATTTAGAAGAATTCATG	0.358									Kartagener_syndrome				6	46					0	0	1	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202121	22202121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:22202121G>A	uc003svg.2	-	13	1176	c.863C>T	c.(862-864)TCA>TTA	p.S288L	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	138	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						CGGAACGTCTGAGTTTTCCTC	0.343													8	50					0	0	1	0	0
KLHL7	55975	broad.mit.edu	37	7	23213840	23213840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:23213840C>T	uc003svs.3	+	11	1977	c.1684C>T	c.(1684-1686)CGT>TGT	p.R562C	KLHL7_uc003svr.3_Missense_Mutation_p.R540C|KLHL7_uc011jys.1_Missense_Mutation_p.R486C|KLHL7_uc011jyt.1_Missense_Mutation_p.R337C|KLHL7_uc003svt.2_Missense_Mutation_p.R514C|KLHL7_uc011jyv.1_Missense_Mutation_p.R292C	NM_001031710	NP_001026880	Q8IXQ5	KLHL7_HUMAN	kelch-like 7 isoform 1	562	Kelch 6.					Golgi apparatus|nucleolus|plasma membrane					0						CTCCAAAGTTCGTGCTTTTCC	0.398													12	124					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23749924	23749924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:23749924C>T	uc003sws.3	+	1	87	c.20C>T	c.(19-21)TCT>TTT	p.S7F	STK31_uc003swt.3_5'UTR|STK31_uc011jze.1_Missense_Mutation_p.S7F|STK31_uc010kuq.2_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	7							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CAGGGTCACTCTTCTAGAGCT	0.582													5	40					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23826179	23826179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:23826179C>T	uc003sws.3	+	19	2394	c.2327C>T	c.(2326-2328)ACC>ATC	p.T776I	STK31_uc003swt.3_Missense_Mutation_p.T753I|STK31_uc011jze.1_Missense_Mutation_p.T776I|STK31_uc010kuq.2_Missense_Mutation_p.T753I|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	776	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AGAGCAGCCACCTACCATAGA	0.423													5	55					0	0	1	0	0
NPY	4852	broad.mit.edu	37	7	24329174	24329174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:24329174G>A	uc003sww.1	+	3	331	c.245G>A	c.(244-246)AGC>AAC	p.S82N		NM_000905	NP_000896	P01303	NPY_HUMAN	neuropeptide Y precursor	82					adult feeding behavior|calcium ion transport|cell proliferation|cellular component movement|central nervous system neuron development|cerebral cortex development|digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|neuron projection development|neuropeptide signaling pathway|positive regulation of appetite|synaptic transmission	cell|extracellular space	calcium channel regulator activity|G-protein coupled receptor activity|neuropeptide hormone activity				0						ATGAGAGAAAGCACAGAAAAT	0.458													10	90					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24690166	24690166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:24690166G>A	uc003swx.2	+	6	785	c.486G>A	c.(484-486)ATG>ATA	p.M162I	MPP6_uc003swy.2_Missense_Mutation_p.M162I	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	162	PDZ.				protein complex assembly		protein binding				0						ATGGGGGAATGATAGATCGAC	0.343													8	70					0	0	1	0	0
HOXA1	3198	broad.mit.edu	37	7	27134281	27134281	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:27134281G>A	uc003sye.2	-	2	880	c.786C>T	c.(784-786)ATC>ATT	p.I262I	HOXA1_uc003syd.2_3'UTR|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	262	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						GGGATGCAGCGATCTCCACCC	0.562													15	135					0	0	1	0	0
HOXA1	3198	broad.mit.edu	37	7	27134339	27134339	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:27134339T>A	uc003sye.2	-	2	822	c.728A>T	c.(727-729)GAA>GTA	p.E243V	HOXA1_uc003syd.2_3'UTR|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	243	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CTTCTCCAGTTCCGTGAGCTG	0.582													17	173					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28857758	28857758	+	Missense_Mutation	SNP	C	T	T	rs78786238		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:28857758C>T	uc003szq.2	+	10	1715	c.1325C>T	c.(1324-1326)CCA>CTA	p.P442L	CREB5_uc003szo.2_Missense_Mutation_p.P409L|CREB5_uc003szr.2_Missense_Mutation_p.P435L|CREB5_uc003szs.2_Missense_Mutation_p.P303L	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	442					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AAAGACTGCCCAATAACAGCC	0.363													13	97					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146129	31146129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:31146129G>A	uc003tca.1	+	16	1461	c.1238G>A	c.(1237-1239)CGA>CAA	p.R413Q	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.R392Q|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.R441Q|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.R441Q|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.R440Q|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	413	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GAGATCAAGCGAAAATGGCGA	0.612													20	92					0	0	1	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378624	31378624	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:31378624G>A	uc003tch.2	-	2	612	c.259C>T	c.(259-261)CTG>TTG	p.L87L		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	87					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						TCCAATCGCAGCTTTGTTGTC	0.373													22	225					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31877577	31877578	+	Nonsense_Mutation	DNP	CG	TA	TA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:31877577_31877578CG>TA	uc003tcm.1	-	10	1457_1458	c.988_989CG>TA	c.(988-990)CGA>TAA	p.R330*	PDE1C_uc003tcn.1_Nonsense_Mutation_p.R330*|PDE1C_uc003tco.1_Nonsense_Mutation_p.R390*|PDE1C_uc003tcr.2_Nonsense_Mutation_p.R330*|PDE1C_uc003tcs.2_Nonsense_Mutation_p.R330*	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	330	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TACCAAGGTTCGAAACTCCCTT	0.391													15	109					0	0	1	0	0
BBS9	27241	broad.mit.edu	37	7	33312753	33312753	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:33312753C>T	uc003tdn.1	+	8	1345	c.832C>T	c.(832-834)CGA>TGA	p.R278*	BBS9_uc003tdo.1_Nonsense_Mutation_p.R278*|BBS9_uc003tdp.1_Nonsense_Mutation_p.R278*|BBS9_uc003tdq.1_Nonsense_Mutation_p.R278*|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Nonsense_Mutation_p.R278*|BBS9_uc011kao.1_Nonsense_Mutation_p.R156*	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	278					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TGGACAAATTCGATTCATGAA	0.378									Bardet-Biedl_syndrome				7	84					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34010029	34010029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:34010029C>T	uc011kap.1	+	5	605	c.491C>T	c.(490-492)CCA>CTA	p.P164L		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	164	VWFC 3.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CCCACATGTCCAGGTAACGTT	0.488													7	83					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34014343	34014343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:34014343G>A	uc011kap.1	+	6	637	c.523G>A	c.(523-525)GAA>AAA	p.E175K		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	175	VWFC 3.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GCAGTATCAAGAAGGGGAGGA	0.483													15	140					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34091493	34091493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:34091493C>T	uc011kap.1	+	8	811	c.697C>T	c.(697-699)CTC>TTC	p.L233F		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	233					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						AGTGTTTGACCTCCCTTTTGG	0.458													8	74					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34867060	34867060	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:34867060C>T	uc003teg.1	+	5	654	c.526C>T	c.(526-528)CTG>TTG	p.L176L	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.L176L|NPSR1_uc010kwt.1_Silent_p.L23L|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Silent_p.L110L|NPSR1_uc003tei.1_Silent_p.L176L|NPSR1_uc010kww.1_Silent_p.L165L|NPSR1_uc011kar.1_Silent_p.L110L|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	176	Helical; Name=4; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCTGTCTTTTCTGTTCTCCAT	0.532													6	50					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34888154	34888154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:34888154C>T	uc003teg.1	+	8	1032	c.904C>T	c.(904-906)CTT>TTT	p.L302F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.L302F|NPSR1_uc010kwt.1_Missense_Mutation_p.L149F|NPSR1_uc010kwu.1_Missense_Mutation_p.L92F|NPSR1_uc010kwv.1_Missense_Mutation_p.L236F|NPSR1_uc003tei.1_Missense_Mutation_p.L302F|NPSR1_uc010kww.1_Missense_Mutation_p.L291F|NPSR1_uc011kar.1_Missense_Mutation_p.L236F	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	302	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TTTCAACCTCCTTCCAGACAC	0.493													37	243					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36588231	36588231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:36588231C>T	uc003tfh.3	-	15	1521	c.1120G>A	c.(1120-1122)GAT>AAT	p.D374N	AOAH_uc010kxf.2_Missense_Mutation_p.D374N|AOAH_uc011kba.1_Missense_Mutation_p.D342N	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	374					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						CTGCAGACATCATTTCCAATC	0.438													8	112					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37264597	37264597	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:37264597C>T	uc003tfk.1	-	9	895	c.588G>A	c.(586-588)TCG>TCA	p.S196S	ELMO1_uc011kbc.1_Silent_p.S100S|ELMO1_uc010kxg.1_Silent_p.S196S	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	196					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GCTGCAGGATCGAGATGTCTA	0.502													3	37					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37916582	37916582	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:37916582C>T	uc003tfn.2	+	12	1339	c.967C>T	c.(967-969)CGA>TGA	p.R323*		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	323	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GGCATTACTTCGACCAAATCT	0.318									Kartagener_syndrome				8	29					0	0	1	0	0
TARP	445347	broad.mit.edu	37	7	38305122	38305122	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:38305122C>T	uc003tge.1	-	5	962	c.585G>A	c.(583-585)ACG>ACA	p.T195T	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						ATCCCAGAATCGTGTTGCTCT	0.418													14	60					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38431605	38431605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:38431605G>A	uc003tgu.2	-	19	1691	c.1622C>T	c.(1621-1623)CCT>CTT	p.P541L	AMPH_uc003tgv.2_Missense_Mutation_p.P499L|AMPH_uc003tgt.2_Missense_Mutation_p.P426L|AMPH_uc003tgw.1_Missense_Mutation_p.P564L|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	541					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GACCACCGAAGGAATGACCTT	0.572													6	70					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	39894292	39894292	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:39894292G>A	uc003thg.2	-	1		c.568C>T								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		ATTGCTTATCGATGTTGCGGA	0.383													22	119					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42003946	42003946	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:42003946G>A	uc011kbh.1	-	15	4816	c.4725C>T	c.(4723-4725)TTC>TTT	p.F1575F	GLI3_uc011kbg.1_Silent_p.F1516F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1575					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TAACTGCAAGGAATTTGCTTT	0.458									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				5	45					0	0	1	0	0
PSMA2	5683	broad.mit.edu	37	7	42966987	42966987	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:42966987A>T	uc003thy.2	-	2	161	c.113T>A	c.(112-114)ATT>AAT	p.I38N	C7orf25_uc010kxr.2_5'UTR|PSMA2_uc010kxt.2_5'UTR|PSMA2_uc003thz.1_Intron	NM_002787	NP_002778	P25787	PSA2_HUMAN	proteasome subunit alpha type 2	38					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|response to virus|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity			large_intestine(2)|ovary(1)	3						ATTACCTTTAATTCCCACGGA	0.383													4	83					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43447216	43447216	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:43447216G>A	uc003tid.1	+	8	1292	c.687G>A	c.(685-687)CTG>CTA	p.L229L	HECW1_uc011kbi.1_Silent_p.L229L|HECW1_uc003tie.1_Silent_p.L261L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	229	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ACCCTTATCTGAAGATTTCCA	0.443													6	48					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43590049	43590049	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:43590049G>A	uc003tid.1	+	27	4859	c.4254G>A	c.(4252-4254)ACG>ACA	p.T1418T	HECW1_uc011kbi.1_Silent_p.T1384T	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1418	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ACAAGGTCACGGAAAGGGAGT	0.507													5	47					0	0	1	0	0
URGCP	55665	broad.mit.edu	37	7	43918643	43918644	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:43918643_43918644GG>AA	uc003tiw.2	-	6	475_476	c.418_419CC>TT	c.(418-420)CCA>TTA	p.P140L	URGCP_uc003tiu.2_Missense_Mutation_p.P97L|URGCP_uc003tiv.2_Missense_Mutation_p.P65L|URGCP_uc003tix.2_Missense_Mutation_p.P131L|URGCP_uc003tiy.2_Missense_Mutation_p.P97L|URGCP_uc003tiz.2_Missense_Mutation_p.P97L|URGCP_uc011kbj.1_Missense_Mutation_p.P97L	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	140					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						CCTGGCGTCTGGGAGCACGTCC	0.55													16	130					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44189458	44189458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:44189458C>T	uc003tkl.2	-	6	1050	c.580G>A	c.(580-582)GAC>AAC	p.D194N	GCK_uc003tkj.1_Missense_Mutation_p.D193N|GCK_uc003tkk.1_Missense_Mutation_p.D195N	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	194					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						ATTTCAAAGTCCTGCCAAGAA	0.597													10	112					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44191933	44191933	+	Silent	SNP	G	A	A	rs13306389		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:44191933G>A	uc003tkl.2	-	3	770	c.300C>T	c.(298-300)AGC>AGT	p.S100S	GCK_uc003tkj.1_Silent_p.S99S|GCK_uc003tkk.1_Silent_p.S101S	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	100					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TGGTCTTCACGCTCCACTGCC	0.627													5	236					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45010657	45010657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:45010657C>T	uc003tmh.2	-	8	992	c.848G>A	c.(847-849)GGA>GAA	p.G283E	MYO1G_uc003tmg.2_Missense_Mutation_p.G45E|MYO1G_uc010kym.2_Missense_Mutation_p.G168E|MYO1G_uc003tmi.1_Missense_Mutation_p.G195E|MYO1G_uc003tmj.2_Missense_Mutation_p.G45E	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	283	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						CTCGATGTTTCCCTGGTGATG	0.582													5	31					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45717523	45717523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:45717523C>T	uc003tne.3	+	9	1679	c.1661C>T	c.(1660-1662)ACC>ATC	p.T554I		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	554	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TCTTTTTCTACCAACGTTGTC	0.512													8	120					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45726195	45726195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:45726195C>T	uc003tne.3	+	14	2395	c.2377C>T	c.(2377-2379)CTC>TTC	p.L793F		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	793	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGCCATCCTGCTCTTCTCCTG	0.627													12	73					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47835607	47835607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:47835607C>T	uc003tny.1	-	55	8335	c.8335G>A	c.(8335-8337)GCT>ACT	p.A2779T	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2779	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACCATCTCAGCCTCTTCCAAC	0.398													9	141					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47945536	47945536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:47945536G>A	uc003tny.1	-	10	1426	c.1426C>T	c.(1426-1428)CCA>TCA	p.P476S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	476	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGAATAGATGGAAAGTGATGT	0.368													4	42					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50611661	50611661	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:50611661C>T	uc003tpf.3	-	2	209	c.123G>A	c.(121-123)CTG>CTA	p.L41L	DDC_uc010kza.2_Silent_p.L41L|DDC_uc003tpg.3_Silent_p.L41L	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	41					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CGGCAGGGATCAGCGGCCGCA	0.572													20	231					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51092839	51092839	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:51092839G>A	uc003tpr.3	-	12	3920	c.3735C>T	c.(3733-3735)ATC>ATT	p.I1245I	COBL_uc003tps.2_Silent_p.I1255I|COBL_uc011kcl.1_Silent_p.I1198I|COBL_uc003tpp.3_Silent_p.I1031I|COBL_uc003tpq.3_Silent_p.I1139I|COBL_uc003tpo.3_Silent_p.I787I	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1245	WH2 3.									skin(3)|ovary(2)	5	Glioma(55;0.08)					TGCCGGAGCGGATGGCGTCCA	0.632													19	233					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103536	53103536	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:53103536C>T	uc003tpz.2	+	1	188	c.172C>T	c.(172-174)CTG>TTG	p.L58L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	58											0						CCTGAGGTCCCTGACTCAGAG	0.706													11	59					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103629	53103629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:53103629C>T	uc003tpz.2	+	1	281	c.265C>T	c.(265-267)CCG>TCG	p.P89S		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	89											0						CCCCGCCAAGCCGCAGCGGGT	0.692													4	27					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55260515	55260515	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:55260515G>A	uc003tqk.2	+	22	2928	c.2682G>A	c.(2680-2682)CAG>CAA	p.Q894Q	EGFR_uc010kzg.1_Silent_p.Q849Q|EGFR_uc011kco.1_Silent_p.Q841Q	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	894	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	ATACCCACCAGAGTGATGTCT	0.413		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			16	114					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55269012	55269012	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:55269012C>T	uc003tqk.2	+	25	3324	c.3078C>T	c.(3076-3078)AGC>AGT	p.S1026S	EGFR_uc010kzg.1_Silent_p.S981S|EGFR_uc011kco.1_Silent_p.S973S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	1026	Cytoplasmic (Potential).|Ser-rich.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCTTCAGCAGCCCCTCCACGT	0.517		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			11	126					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57188335	57188335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:57188335G>A	uc010kzo.2	-	5	1058	c.787C>T	c.(787-789)CAT>TAT	p.H263Y		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	263	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TCTCCAGTATGAGTTCTCTTA	0.428													3	28					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529220	57529220	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:57529220C>T	uc011kdi.1	+	4	1165	c.1053C>T	c.(1051-1053)CTC>CTT	p.L351L		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						GGGAGAAACTCTACACATGTG	0.398													3	25					0	0	1	0	0
ZNF107	51427	broad.mit.edu	37	7	64167478	64167478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:64167478C>T	uc003ttd.2	+	7	1582	c.796C>T	c.(796-798)CAT>TAT	p.H266Y	ZNF107_uc003tte.2_Missense_Mutation_p.H266Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	266	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TAAGAGAATTCATGCTGGGGA	0.358													6	32					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71134994	71134994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:71134994G>A	uc003tvy.2	+	8	1304	c.1304G>A	c.(1303-1305)AGA>AAA	p.R435K	WBSCR17_uc003tvz.2_Missense_Mutation_p.R134K	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	435	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TCCGAAAGAAGAGCATTAAGG	0.463													7	85					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339456	72339456	+	RNA	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:72339456G>A	uc010lal.1	-	1		c.200C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						GCTCAGGGGCGAGCACCTTCC	0.602													3	39					0	0	1	0	0
GTF2IP1	2970	broad.mit.edu	37	7	72606585	72606585	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:72606585A>T	uc003txo.3	+	11	1460	c.579A>T	c.(577-579)ATA>ATT	p.I193I	FKBP6_uc003twz.2_Intron|GTF2IP1_uc011keq.1_Silent_p.I193I	NR_003580				SubName: Full=cDNA FLJ61347, highly similar to General transcription factor II-I;												0						CTAGTAAAATAAACACTAAAG	0.418													9	45					0	0	1	0	0
TRIM50	135892	broad.mit.edu	37	7	72738661	72738661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:72738661G>A	uc010lbd.1	-	2	250	c.125C>T	c.(124-126)TCC>TTC	p.S42F	FKBP6_uc003twz.2_Intron|TRIM50_uc003txy.1_Missense_Mutation_p.S42F|TRIM50_uc003txz.1_Missense_Mutation_p.S42F	NM_178125	NP_835226	Q86XT4	TRI50_HUMAN	tripartite motif protein 50A	42	RING-type.					cytoplasm|intracellular membrane-bounded organelle	ligase activity|zinc ion binding			skin(1)	1						GCAGGACAGGGAAACCAGGCA	0.657											OREG0018105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	72					0	0	1	0	0
FKBP6	8468	broad.mit.edu	37	7	72745747	72745747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:72745747C>T	uc003tya.2	+	5	688	c.556C>T	c.(556-558)CGT>TGT	p.R186C	FKBP6_uc003twz.2_Missense_Mutation_p.R156C|FKBP6_uc011kew.1_Missense_Mutation_p.R181C|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	186	TPR 1.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CCGCCAGAATCGTTTCTATGA	0.423													12	96					0	0	1	0	0
CLIP2	7461	broad.mit.edu	37	7	73731903	73731903	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:73731903C>T	uc003uam.2	+	2	354	c.27C>T	c.(25-27)CCC>CCT	p.P9P	CLIP2_uc003uan.2_Silent_p.P9P	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	9						microtubule associated complex				skin(3)	3						GCCTGAAGCCCCCCGGCCGTG	0.667													8	106					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74005189	74005190	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:74005189_74005190CC>TG	uc003uaq.2	+	24	2872_2873	c.2479_2480CC>TG	c.(2479-2481)CCT>TGT	p.P827C	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.P844C|GTF2IRD1_uc003uap.2_Missense_Mutation_p.P812C|GTF2IRD1_uc003uar.1_Missense_Mutation_p.P812C	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	827	GTF2I-like 5.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GGTGCTGGTCCCTTATAAACTA	0.599													4	73					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75197555	75197555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:75197555G>A	uc003uds.1	-	9	792	c.751C>T	c.(751-753)CCA>TCA	p.P251S	HIP1_uc011kfz.1_Missense_Mutation_p.P128S	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	251				KLHSCLP -> EFAAAST (in Ref. 6; CAA70574).	activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GTGTCAGCTGGGAGGCCTGGA	0.582			T	PDGFRB	CMML								9	86					0	0	1	0	0
CCL24	6369	broad.mit.edu	37	7	75442967	75442967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:75442967G>A	uc011kga.1	-	1	67	c.67C>T	c.(67-69)CCT>TCT	p.P23S		NM_002991	NP_002982	O00175	CCL24_HUMAN	small inducible cytokine A24 precursor	23					cell-cell signaling|chemotaxis|immune response|inflammatory response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|signal transduction	extracellular space	chemokine activity				0						TTACCCGTAGGGATGATGTGG	0.607													18	160					0	0	1	0	0
MDH2	4191	broad.mit.edu	37	7	75693679	75693679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:75693679C>T	uc003ueo.2	+	7	742	c.656C>T	c.(655-657)CCC>CTC	p.P219L	MDH2_uc003uep.2_Missense_Mutation_p.P112L|MDH2_uc011kgh.1_Missense_Mutation_p.P177L	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	219					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	GTGGACTTTCCCCAGGACCAG	0.647													4	40					0	0	1	0	0
ZP3	7784	broad.mit.edu	37	7	76062937	76062937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:76062937C>T	uc003ufd.3	+	4	696	c.686C>T	c.(685-687)CCT>CTT	p.P229L	ZP3_uc003ufc.3_Missense_Mutation_p.P178L|ZP3_uc003ufe.2_Missense_Mutation_p.P137L	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	229	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						AATGCCTCCCCTTATCACACC	0.562													15	179					0	0	1	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681113	76681113	+	RNA	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:76681113T>C	uc003ufy.2	+	5		c.1090T>C				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						GCACAAATGGTTCCTCTCCTC	0.517													7	122					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	78131015	78131015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:78131015C>T	uc003ugx.2	-	5	1098	c.844G>A	c.(844-846)GAG>AAG	p.E282K	MAGI2_uc003ugy.2_Missense_Mutation_p.E282K|MAGI2_uc011kgr.1_Missense_Mutation_p.E114K|MAGI2_uc011kgs.1_Missense_Mutation_p.E119K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	282	Guanylate kinase-like.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCCTTCAGCTCCTCAGGCTGA	0.488													5	84					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82388008	82388008	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82388008C>T	uc003uhx.2	-	25	15601	c.15312G>A	c.(15310-15312)GGG>GGA	p.G5104G		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	5027	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCATAAACTTCCCTCCATTGG	0.323													4	38					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82453651	82453651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82453651C>T	uc003uhx.2	-	19	14786	c.14497G>A	c.(14497-14499)GAT>AAT	p.D4833N	PCLO_uc003uhv.2_Missense_Mutation_p.D4833N|PCLO_uc003uht.1_Missense_Mutation_p.D275N|PCLO_uc003uhu.1_Missense_Mutation_p.D254N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4695					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCCATGATCAATGCTTTCA	0.438													4	61					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544307	82544307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82544307G>A	uc003uhx.2	-	7	13284	c.12995C>T	c.(12994-12996)TCA>TTA	p.S4332L	PCLO_uc003uhv.2_Missense_Mutation_p.S4332L|PCLO_uc010lec.2_Missense_Mutation_p.S1297L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4263	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCAGAGGATGATGCATGACT	0.423													4	39					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544788	82544788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82544788C>T	uc003uhx.2	-	7	12803	c.12514G>A	c.(12514-12516)GAA>AAA	p.E4172K	PCLO_uc003uhv.2_Missense_Mutation_p.E4172K|PCLO_uc010lec.2_Missense_Mutation_p.E1137K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4103					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTTGTTTTTCAAGTGTGAGT	0.368													4	68					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544905	82544905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82544905G>A	uc003uhx.2	-	7	12686	c.12397C>T	c.(12397-12399)CGT>TGT	p.R4133C	PCLO_uc003uhv.2_Missense_Mutation_p.R4133C|PCLO_uc010lec.2_Missense_Mutation_p.R1098C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4064					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTCCCTCTACGAAATTCCTGT	0.408													6	42					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82578863	82578863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82578863C>T	uc003uhx.2	-	6	11330	c.11041G>A	c.(11041-11043)GAC>AAC	p.D3681N	PCLO_uc003uhv.2_Missense_Mutation_p.D3681N|PCLO_uc010lec.2_Missense_Mutation_p.D646N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3612					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTTGGGGTCAGACATAGAA	0.483													13	161					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82578956	82578956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82578956C>T	uc003uhx.2	-	6	11237	c.10948G>A	c.(10948-10950)GAT>AAT	p.D3650N	PCLO_uc003uhv.2_Missense_Mutation_p.D3650N|PCLO_uc010lec.2_Missense_Mutation_p.D615N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3581					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGACTTATATCATCAGGGAGG	0.468													7	181					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579382	82579382	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82579382T>C	uc003uhx.2	-	6	10811	c.10522A>G	c.(10522-10524)AAA>GAA	p.K3508E	PCLO_uc003uhv.2_Missense_Mutation_p.K3508E|PCLO_uc010lec.2_Missense_Mutation_p.K473E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3439					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAAGGGGTTTGGTCTTGTCA	0.473													6	37					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579734	82579734	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82579734G>A	uc003uhx.2	-	6	10459	c.10170C>T	c.(10168-10170)ATC>ATT	p.I3390I	PCLO_uc003uhv.2_Silent_p.I3390I|PCLO_uc010lec.2_Silent_p.I355I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3321					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGTGCTCAGGATACCAGGTG	0.448													3	35					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82584459	82584459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82584459C>T	uc003uhx.2	-	5	6099	c.5810G>A	c.(5809-5811)CGA>CAA	p.R1937Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1937Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1868					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CACTTCATCTCGTTCATTTGC	0.363													8	24					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585683	82585683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82585683C>T	uc003uhx.2	-	5	4875	c.4586G>A	c.(4585-4587)CGA>CAA	p.R1529Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1529Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1460					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTAGTTCTTCGTTTTCTTTG	0.398													7	23					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82763711	82763711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:82763711G>A	uc003uhx.2	-	3	3444	c.3155C>T	c.(3154-3156)TCG>TTG	p.S1052L	PCLO_uc003uhv.2_Missense_Mutation_p.S1052L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	998					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGTTTGGGCGATTTCTCCAG	0.408													7	42					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83689803	83689803	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:83689803C>T	uc003uhz.2	-	5	840	c.525G>A	c.(523-525)CTG>CTA	p.L175L		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	175	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ATGCTGTCAGCAGCTTAGGGT	0.353													29	245					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468384	86468384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:86468384G>A	uc003uid.2	+	4	2653	c.1554G>A	c.(1552-1554)ATG>ATA	p.M518I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.M390I|GRM3_uc010leh.2_Missense_Mutation_p.M110I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	518	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCAATGAAATGAAGAATATGC	0.522													13	95					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468433	86468433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:86468433G>A	uc003uid.2	+	4	2702	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.E407K|GRM3_uc010leh.2_Missense_Mutation_p.E127K	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	535	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CATCCCCTGTGAACCCTACGA	0.532													10	152					0	0	1	0	0
CROT	54677	broad.mit.edu	37	7	87005030	87005030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:87005030C>T	uc003uit.2	+	8	984	c.739C>T	c.(739-741)CGA>TGA	p.R247*	CROT_uc003uiu.2_Nonsense_Mutation_p.R275*	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	247					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	GGAGCGAACTCGATGGGCTAA	0.373													6	81					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87037538	87037538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:87037538C>T	uc003uiv.1	-	25	3170	c.3094G>A	c.(3094-3096)GGA>AGA	p.G1032R	ABCB4_uc003uiw.1_Missense_Mutation_p.G1032R|ABCB4_uc003uix.1_Missense_Mutation_p.G985R	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1032	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GTTATATTTCCTTCAAATTTA	0.368													8	44					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87082366	87082366	+	Nonsense_Mutation	SNP	G	A	A	rs72552780		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:87082366G>A	uc003uiv.1	-	6	506	c.430C>T	c.(430-432)CGA>TGA	p.R144*	ABCB4_uc003uiw.1_Nonsense_Mutation_p.R144*|ABCB4_uc003uix.1_Nonsense_Mutation_p.R144*|ABCB4_uc003uiy.2_Nonsense_Mutation_p.R144*	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	144	ABC transmembrane type-1 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTGATCTGTCGACCAGCTGCC	0.408													9	74					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87795236	87795236	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:87795236G>A	uc003ujn.2	+	24	2245	c.2166G>A	c.(2164-2166)AAG>AAA	p.K722K	ADAM22_uc003ujk.1_Silent_p.K722K|ADAM22_uc003ujl.1_Silent_p.K722K|ADAM22_uc003ujm.2_Silent_p.K722K|ADAM22_uc003ujo.2_Silent_p.K722K|ADAM22_uc003ujp.1_Silent_p.K774K	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	722	Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			ATGATGCAAAGACTGGTATCA	0.383													11	53					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87912044	87912044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:87912044C>T	uc003ujs.2	-	3	1001	c.896G>A	c.(895-897)GGA>GAA	p.G299E	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.G299E	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	299	Ferric oxidoreductase.|Helical; (Potential).				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					GAAGGCAAATCCCAGAGCTAC	0.468													3	59					0	0	1	0	0
C7orf63	79846	broad.mit.edu	37	7	89939461	89939461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:89939461C>T	uc010lep.2	+	23	2986	c.2735C>T	c.(2734-2736)GCT>GTT	p.A912V	C7orf63_uc011khj.1_Missense_Mutation_p.A894V|C7orf63_uc011khk.1_Missense_Mutation_p.A428V	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	912							binding			ovary(1)	1						ACGGATATTGCTCTTAAAAAA	0.433													6	90					0	0	1	0	0
CDK14	5218	broad.mit.edu	37	7	90741917	90741917	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:90741917G>A	uc003uky.2	+	13	1437	c.1215G>A	c.(1213-1215)AAG>AAA	p.K405K	CDK14_uc003ukz.1_Silent_p.K387K|CDK14_uc010les.1_Silent_p.K359K|CDK14_uc011khl.1_Silent_p.K276K	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	405	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						GTTCCCCAAAGAACAGACTGT	0.502													10	75					0	0	1	0	0
FZD1	8321	broad.mit.edu	37	7	90895665	90895665	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:90895665C>T	uc003ula.2	+	1	1883	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	490	Helical; Name=5; (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			TGCGTGGCTTCGTGCTGGCGC	0.612													22	281					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91660864	91660864	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:91660864C>T	uc003ulg.2	+	16	4509	c.4284C>T	c.(4282-4284)ATC>ATT	p.I1428I	AKAP9_uc003ule.2_Silent_p.I1440I|AKAP9_uc003ulf.2_Silent_p.I1428I|AKAP9_uc003uli.2_Silent_p.I1053I	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1440	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAACAAATATCGTTAAGTTGC	0.289			T	BRAF	papillary thyroid								5	84					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91714906	91714906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:91714906C>T	uc003ulg.2	+	36	9155	c.8930C>T	c.(8929-8931)TCA>TTA	p.S2977L	AKAP9_uc003ulf.2_Missense_Mutation_p.S2969L|AKAP9_uc003uli.2_Missense_Mutation_p.S2600L|AKAP9_uc003ulj.2_Missense_Mutation_p.S747L|AKAP9_uc003ulk.2_Missense_Mutation_p.S252L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2981					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CAGCAGGTTTCAGAACCTTGG	0.428			T	BRAF	papillary thyroid								5	42					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92730652	92730652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92730652C>T	uc003umf.2	-	3	5015	c.4759G>A	c.(4759-4761)GAA>AAA	p.E1587K	SAMD9_uc003umg.2_Missense_Mutation_p.E1587K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1587						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TAAACAATTTCAATGTCATAA	0.393													15	127					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92731123	92731123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92731123C>T	uc003umf.2	-	3	4544	c.4288G>A	c.(4288-4290)GAA>AAA	p.E1430K	SAMD9_uc003umg.2_Missense_Mutation_p.E1430K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1430						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AAATACGGTTCTGAAAACTGA	0.373													11	131					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761187	92761187	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92761187G>A	uc003umh.1	-	5	5314	c.4098C>T	c.(4096-4098)TTC>TTT	p.F1366F	SAMD9L_uc003umj.1_Silent_p.F1366F|SAMD9L_uc003umi.1_Silent_p.F1366F|SAMD9L_uc010lfb.1_Silent_p.F1366F|SAMD9L_uc003umk.1_Silent_p.F1366F|SAMD9L_uc010lfc.1_Silent_p.F1366F|SAMD9L_uc010lfd.1_Silent_p.F1366F|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1366										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GCTGCAGTAGGAAGGCATATT	0.383													11	106					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762055	92762055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92762055C>T	uc003umh.1	-	5	4446	c.3230G>A	c.(3229-3231)CGA>CAA	p.R1077Q	SAMD9L_uc003umj.1_Missense_Mutation_p.R1077Q|SAMD9L_uc003umi.1_Missense_Mutation_p.R1077Q|SAMD9L_uc010lfb.1_Missense_Mutation_p.R1077Q|SAMD9L_uc003umk.1_Missense_Mutation_p.R1077Q|SAMD9L_uc010lfc.1_Missense_Mutation_p.R1077Q|SAMD9L_uc010lfd.1_Missense_Mutation_p.R1077Q|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1077										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGTGGGAATCGTCTACTTCC	0.418													11	87					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92844913	92844913	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92844913C>T	uc003umm.2	-	3	539	c.516G>A	c.(514-516)GTG>GTA	p.V172V	HEPACAM2_uc003uml.2_Silent_p.V160V|HEPACAM2_uc010lff.2_Silent_p.V160V|HEPACAM2_uc011khy.1_Silent_p.V195V	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	172	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TGCCCCCTTCCACATGGCATG	0.507													5	52					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92848715	92848715	+	Silent	SNP	G	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:92848715G>C	uc003umm.2	-	2	152	c.129C>G	c.(127-129)GGC>GGG	p.G43G	HEPACAM2_uc003uml.2_Silent_p.G31G|HEPACAM2_uc010lff.2_Silent_p.G31G|HEPACAM2_uc011khy.1_Silent_p.G66G	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	43	Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						GACCTCTGACGCCATGGACAG	0.517													6	89					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94034521	94034521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:94034521G>A	uc003ung.1	+	10	914	c.443G>A	c.(442-444)GGA>GAA	p.G148E	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfh.1_5'Flank	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	148					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGTCACCCTGGAAAACCCGGA	0.423										HNSCC(75;0.22)			10	38					0	0	1	0	0
PDK4	5166	broad.mit.edu	37	7	95224385	95224385	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:95224385G>A	uc003uoa.2	-	2	542	c.222C>T	c.(220-222)ATC>ATT	p.I74I	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	74					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			GGGTCGGGAGGATATCAATTT	0.388													13	186					0	0	1	0	0
DLX5	1749	broad.mit.edu	37	7	96651519	96651519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:96651519G>A	uc003uon.2	-	2	726	c.518C>T	c.(517-519)TCG>TTG	p.S173L	DLX5_uc011kim.1_Missense_Mutation_p.S173L	NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	173	Homeobox.				cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CAATCCCAGCGAGGCGGCCAG	0.577													17	168					0	0	1	0	0
TAC1	6863	broad.mit.edu	37	7	97363571	97363571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:97363571G>A	uc003uop.3	+	4	478	c.232G>A	c.(232-234)GAA>AAA	p.E78K	TAC1_uc003uoq.3_Missense_Mutation_p.E78K|TAC1_uc003uor.3_Intron|TAC1_uc003uos.3_Intron	NM_003182	NP_003173	P20366	TKN1_HUMAN	tachykinin 1 isoform beta precursor	78					detection of abiotic stimulus|elevation of cytosolic calcium ion concentration|insemination|neuropeptide signaling pathway|synaptic transmission|tachykinin receptor signaling pathway	extracellular space					0	all_cancers(62;3.95e-09)|all_epithelial(64;1.1e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0358)|all_lung(186;0.0384)				Bacitracin(DB00626)	TTCCTCAATTGAAAAACAAGT	0.343													3	44					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97823155	97823155	+	Silent	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:97823155C>A	uc003upd.1	+	11	3671	c.3378C>A	c.(3376-3378)TCC>TCA	p.S1126S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1126					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CCTCCCCATCCGCCTTGGTGT	0.607													4	86					0.217242	0.217511	1	1	0
TRRAP	8295	broad.mit.edu	37	7	98602800	98602800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:98602800C>T	uc003upp.2	+	68	10749	c.10540C>T	c.(10540-10542)CGG>TGG	p.R3514W	TRRAP_uc011kis.1_Missense_Mutation_p.R3485W|TRRAP_uc003upr.2_Missense_Mutation_p.R3220W	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3514					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CACCGCAGCCCGGCGGCTGTA	0.587													23	156					0	0	1	0	0
PTCD1	26024	broad.mit.edu	37	7	99022469	99022469	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:99022469G>A	uc003uqh.2	-	6	1817	c.1686C>T	c.(1684-1686)GCC>GCT	p.A562A	PTCD1_uc011kiw.1_Silent_p.A611A	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	562	PPR 8.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			GGCACCCGATGGCCAGGTTGC	0.627													12	77					0	0	1	0	0
PTCD1	26024	broad.mit.edu	37	7	99030974	99030974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:99030974C>T	uc003uqh.2	-	3	652	c.521G>A	c.(520-522)AGC>AAC	p.S174N	PTCD1_uc011kiw.1_Missense_Mutation_p.S223N	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	174	PPR 2.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CGTGTAGTTGCTCTCCATGGG	0.512													27	262					0	0	1	0	0
CYP3A43	64816	broad.mit.edu	37	7	99436796	99436796	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:99436796G>A	uc003urx.1	+	3	321	c.218_splice	c.e3+1	p.G73_splice	CYP3A43_uc003ury.1_Splice_Site_p.G73_splice|CYP3A43_uc003urz.1_Splice_Site_p.G73_splice|CYP3A43_uc003usa.1_Splice_Site|CYP3A43_uc010lgi.1_Splice_Site_p.A114_splice|CYP3A43_uc003usb.1_Splice_Site	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,						xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AAATGTGGGGGTGAGTATTCT	0.368													6	113					0	0	1	0	0
AP4M1	9179	broad.mit.edu	37	7	99700339	99700339	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:99700339C>T	uc003utb.3	+	3	397	c.189C>T	c.(187-189)GGC>GGT	p.G63G	MCM7_uc003usv.1_5'Flank|MCM7_uc003usw.1_5'Flank|MCM7_uc003usx.1_5'Flank|AP4M1_uc011kjg.1_Silent_p.G63G|AP4M1_uc010lgl.1_Silent_p.G63G|AP4M1_uc003utc.3_Silent_p.G70G|AP4M1_uc010lgm.2_5'UTR|AP4M1_uc003utd.2_Silent_p.G63G|AP4M1_uc011kjh.1_Silent_p.G15G|AP4M1_uc003ute.3_5'UTR|AP4M1_uc003utf.3_5'UTR	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	63					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GACACAGCGGCCTCTATTTGG	0.443													6	113					0	0	1	0	0
MEPCE	56257	broad.mit.edu	37	7	100028737	100028737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100028737C>T	uc003uuw.2	+	1	1209	c.1096C>T	c.(1096-1098)CGC>TGC	p.R366C	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	366							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCGCAAACGTCGCAGGACTTC	0.637													9	224					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100189429	100189429	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100189429C>T	uc003uvm.1	+	4	755	c.462C>T	c.(460-462)ACC>ACT	p.T154T	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.T140T|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.T192T|FBXO24_uc011kka.1_Silent_p.T142T	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	154						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACGTGGGGACCCTCTTCTTCC	0.587													9	137					0	0	1	0	0
TFR2	7036	broad.mit.edu	37	7	100229709	100229709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100229709C>T	uc003uvv.1	-	7	1003	c.962G>A	c.(961-963)GGA>GAA	p.G321E	TFR2_uc010lhc.1_5'UTR|TFR2_uc003uvu.1_Missense_Mutation_p.G150E	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	321	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACTCACATGTCCATACACTGC	0.582													11	120					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350306	100350306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100350306C>T	uc003uwj.2	+	14	2743	c.2578C>T	c.(2578-2580)CCC>TCC	p.P860S	ZAN_uc003uwk.2_Missense_Mutation_p.P860S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	860	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACCCACCATCCCCACAGAAAA	0.488													6	131					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350389	100350389	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100350389C>T	uc003uwj.2	+	14	2826	c.2661C>T	c.(2659-2661)ATC>ATT	p.I887I	ZAN_uc003uwk.2_Silent_p.I887I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	887	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACCCACCATCCCCATTGAAG	0.502													18	138					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100365543	100365543	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100365543G>A	uc003uwj.2	+	26	5115	c.4950G>A	c.(4948-4950)ACG>ACA	p.T1650T	ZAN_uc003uwk.2_Silent_p.T1650T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Silent_p.T227T	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1650	Extracellular (Potential).|VWFD 2.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCCTCTACACGAACTTTGGGC	0.602													4	54					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100421381	100421381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100421381G>A	uc003uwn.1	-	3	787	c.296C>T	c.(295-297)TCC>TTC	p.S99F	EPHB4_uc003uwm.1_Missense_Mutation_p.S6F|EPHB4_uc010lhj.1_Missense_Mutation_p.S99F|EPHB4_uc011kkf.1_Missense_Mutation_p.S99F|EPHB4_uc011kkg.1_Missense_Mutation_p.S99F|EPHB4_uc011kkh.1_Missense_Mutation_p.S99F	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	99	Extracellular (Potential).				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCGAGGCAGGGACAGGCACTC	0.692													23	120					0	0	1	0	0
SRRT	51593	broad.mit.edu	37	7	100482918	100482918	+	Missense_Mutation	SNP	G	A	A	rs150582291	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100482918G>A	uc003uwy.2	+	11	1512	c.1244G>A	c.(1243-1245)CGG>CAG	p.R415Q	SRRT_uc010lhl.1_Missense_Mutation_p.R414Q|SRRT_uc003uxa.2_Missense_Mutation_p.R414Q|SRRT_uc003uwz.2_Missense_Mutation_p.R415Q	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	415					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						TGCAAGCCGCGGCCGCTGCAT	0.632													12	73					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100677114	100677114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100677114C>T	uc003uxp.1	+	3	2470	c.2417C>T	c.(2416-2418)CCT>CTT	p.P806L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	806	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|11.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGGAAGTCCTTTATTAACA	0.483													36	530					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679189	100679189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100679189C>T	uc003uxp.1	+	3	4545	c.4492C>T	c.(4492-4494)CCT>TCT	p.P1498S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1498	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|23.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATCTCCTACACCTGCTGAAGG	0.493													15	336					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679686	100679686	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100679686C>T	uc003uxp.1	+	3	5042	c.4989C>T	c.(4987-4989)ATC>ATT	p.I1663I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1663	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|26.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCCTGTGATCACTTCTACTG	0.473													38	483					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681026	100681027	+	Missense_Mutation	DNP	GC	TG	TG			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100681026_100681027GC>TG	uc003uxp.1	+	3	6382_6383	c.6329_6330GC>TG	c.(6328-6330)AGC>ATG	p.S2110M	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2110	Extracellular (Potential).|33.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATACCTCTCAGCACCACGCCGG	0.49													21	421					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685695	100685695	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100685695G>A	uc003uxp.1	+	3	11051	c.10998G>A	c.(10996-10998)GTG>GTA	p.V3666V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3666	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCACACCTGTGATCACTTCTA	0.493													19	246					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100686587	100686587	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100686587C>A	uc003uxp.1	+	3	11943	c.11890C>A	c.(11890-11892)CCT>ACT	p.P3964T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3964	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGTATCTACCCCTGTGATAAC	0.448													5	142					0.307466	0.307771	1	1	0
MUC17	140453	broad.mit.edu	37	7	100686592	100686592	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100686592G>A	uc003uxp.1	+	3	11948	c.11895G>A	c.(11893-11895)GTG>GTA	p.V3965V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3965	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTACCCCTGTGATAACTTCCA	0.448													9	133					0	0	1	0	0
MOGAT3	346606	broad.mit.edu	37	7	100841484	100841484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:100841484G>A	uc003uyc.2	-	5	823	c.656C>T	c.(655-657)GCG>GTG	p.A219V	MOGAT3_uc010lhr.2_Missense_Mutation_p.A219V	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	219					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					GTGCCTCAGCGCCAGGCGCAC	0.642													4	73					0	0	1	0	0
EMID2	136227	broad.mit.edu	37	7	101200735	101200735	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:101200735C>T	uc010lhy.1	+	14	1437	c.1245C>T	c.(1243-1245)CCC>CCT	p.P415P	EMID2_uc003uyo.1_3'UTR	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	417						collagen				ovary(1)	1	Lung NSC(181;0.215)					GCGCCCAACCCGATGGGGTCC	0.647													4	39					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103123354	103123354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:103123354C>T	uc003vca.2	-	63	10406	c.10246G>A	c.(10246-10248)GAT>AAT	p.D3416N	RELN_uc010liz.2_Missense_Mutation_p.D3416N	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3416					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCCCATTGATCATGACCTGTT	0.473													13	113					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103275896	103275896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:103275896G>A	uc003vca.2	-	19	2601	c.2441C>T	c.(2440-2442)TCA>TTA	p.S814L	RELN_uc010liz.2_Missense_Mutation_p.S814L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	814					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCTGAGATATGAATAATGCTC	0.408													7	56					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103557529	103557529	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:103557529G>A	uc003vca.2	-	2	490	c.330C>T	c.(328-330)TTC>TTT	p.F110F	RELN_uc010liz.2_Silent_p.F110F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	110	Reelin.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TACCAAATCCGAAAGCACTGG	0.393													12	100					0	0	1	0	0
SLC26A4	5172	broad.mit.edu	37	7	107323769	107323769	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:107323769C>T	uc003vep.2	+	7	1112	c.888C>T	c.(886-888)ATC>ATT	p.I296I		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	296	Helical; (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						GACACAAAATCCCAGTCCCTA	0.353									Pendred_syndrome				6	111					0	0	1	0	0
LAMB1	3912	broad.mit.edu	37	7	107618514	107618514	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:107618514G>A	uc003vew.2	-	9	1313	c.978C>T	c.(976-978)GGC>GGT	p.G326G	LAMB1_uc003vev.2_Silent_p.G350G|LAMB1_uc003vex.2_Silent_p.G326G|LAMB1_uc010ljn.1_Silent_p.G412G	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	326	Laminin EGF-like 1.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGCTGTTTCGGCCTTCAGCAG	0.438													9	93					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107696146	107696146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:107696146C>T	uc010ljo.1	-	25	3770	c.3686G>A	c.(3685-3687)AGG>AAG	p.R1229K	LAMB4_uc003vey.2_Missense_Mutation_p.R1229K|LAMB4_uc010ljp.1_Missense_Mutation_p.R198K	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1229	Domain II.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TTTCAAAATCCTTTCTATTTC	0.408													7	75					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107746315	107746315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:107746315C>T	uc010ljo.1	-	8	901	c.817G>A	c.(817-819)GAA>AAA	p.E273K	LAMB4_uc003vey.2_Missense_Mutation_p.E273K	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	273	Laminin EGF-like 1.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GGGCGACATTCGCTAGCATGG	0.468													9	140					0	0	1	0	0
LRRN3	54674	broad.mit.edu	37	7	110763511	110763511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:110763511C>T	uc003vft.3	+	4	1729	c.683C>T	c.(682-684)CCA>CTA	p.P228L	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.P228L|LRRN3_uc003vfs.3_Missense_Mutation_p.P228L	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	228	Extracellular (Potential).|LRR 7.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		ACAGAAATACCAGATAACGCC	0.368													10	55					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111503492	111503492	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:111503492G>A	uc003vfx.2	-	23	2678	c.2409C>T	c.(2407-2409)TCC>TCT	p.S803S	DOCK4_uc003vfw.2_Silent_p.S244S|DOCK4_uc003vfy.2_Silent_p.S803S|DOCK4_uc003vga.1_Silent_p.S408S	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	803					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TGGCCTGCAGGGAATCATCCA	0.522													3	65					0	0	1	0	0
ZNF277	11179	broad.mit.edu	37	7	111935966	111935966	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:111935966C>T	uc003vge.2	+	3	465	c.336C>T	c.(334-336)ATC>ATT	p.I112I	ZNF277_uc003vgd.2_Silent_p.I112I|ZNF277_uc003vgf.2_Silent_p.I34I|ZNF277_uc003vgg.2_5'UTR	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	112						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						AACAGCCCATCACAGATTTTT	0.328													6	101					0	0	1	0	0
C7orf53	286006	broad.mit.edu	37	7	112129885	112129885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:112129885G>A	uc011kmq.1	+	4	412	c.277G>A	c.(277-279)GAT>AAT	p.D93N	C7orf53_uc003vgl.2_RNA|C7orf53_uc003vgm.2_Missense_Mutation_p.D93N	NM_001134468	NP_001127940	Q8N8F7	CG053_HUMAN	hypothetical protein LOC286006	93	Potential.					integral to membrane				ovary(1)	1						AAACAAGATGGATGATGTGTC	0.388													5	68					0	0	1	0	0
TMEM168	64418	broad.mit.edu	37	7	112407699	112407699	+	Silent	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:112407699T>G	uc003vgn.2	-	5	2039	c.1647A>C	c.(1645-1647)TCA>TCC	p.S549S	TMEM168_uc010lju.2_Silent_p.S549S|TMEM168_uc011kmr.1_Silent_p.S165S	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	549						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						CCCAAGGGGTTGAATTTTCGC	0.413													9	80					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518660	113518660	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:113518660C>T	uc010ljy.1	-	4	2518	c.2487G>A	c.(2485-2487)AGG>AGA	p.R829R		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	829					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CATGTGTCTTCCTAGGATTGT	0.368													4	110					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113520098	113520098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:113520098G>A	uc010ljy.1	-	4	1080	c.1049C>T	c.(1048-1050)CCA>CTA	p.P350L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	350					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGCTTTATTTGGAAAATTGAC	0.373													9	113					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115594656	115594656	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:115594656C>T	uc003vhj.1	-	5	607	c.423G>A	c.(421-423)AAG>AAA	p.K141K	TFEC_uc003vhk.1_Silent_p.K112K|TFEC_uc003vhl.3_Silent_p.K112K|TFEC_uc011kmw.1_Silent_p.K231K	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	141	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			TGTGGTTGTCCTTTTTTTGTC	0.333													3	36					0	0	1	0	0
ASZ1	136991	broad.mit.edu	37	7	117021076	117021076	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:117021076C>A	uc003vjb.2	-	9	997	c.934G>T	c.(934-936)GAA>TAA	p.E312*	ASZ1_uc011kno.1_Nonsense_Mutation_p.E312*|ASZ1_uc011knp.1_Nonsense_Mutation_p.E104*	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	312	SAM.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TTTGTAAATTCATCTTCCCTC	0.318													5	185					0.0215528	0.0216169	1	1	0
CFTR	1080	broad.mit.edu	37	7	117120199	117120199	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:117120199C>T	uc003vjd.2	+	1	183	c.51C>T	c.(49-51)TTC>TTT	p.F17F	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	17	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AACTTTTTTTCAGGTGAGAAG	0.567									Cystic_Fibrosis				7	78					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117199657	117199657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:117199657C>T	uc003vjd.2	+	11	1664	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	CFTR_uc011knq.1_5'UTR|CFTR_uc003vje.1_RNA	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	511	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTGGTGTTTCCTATGATGAA	0.358									Cystic_Fibrosis				5	64					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117232347	117232347	+	Missense_Mutation	SNP	G	A	A	rs35722447		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:117232347G>A	uc003vjd.2	+	14	2258	c.2126G>A	c.(2125-2127)CGA>CAA	p.R709Q	CFTR_uc011knq.1_Missense_Mutation_p.R115Q	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	709	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AACTCTATACGAAAATTTTCC	0.383									Cystic_Fibrosis				8	61					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915400	119915400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:119915400G>A	uc003vjj.1	+	1	1679	c.714G>A	c.(712-714)ATG>ATA	p.M238I		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	238	Helical; Name=Segment S2; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CCTGCGTCATGATCTTCACAG	0.542													8	63					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120382599	120382599	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:120382599C>T	uc003vjj.1	+	4	2375	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	470	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TTAGCAAATCCGGCTCCAGCT	0.478													9	123					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120385879	120385879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:120385879G>A	uc003vjj.1	+	5	2478	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	505	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					AAGCTGCATGGAAGTTGCAAC	0.408													3	30					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120911337	120911337	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:120911337G>A	uc003vjq.3	+	22	3169	c.2722_splice	c.e22-1	p.S908_splice		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1							endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TTTCCAATCAGAGTGAAGTAC	0.318													3	27					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121650586	121650586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:121650586C>T	uc003vjy.2	+	12	1881	c.1486C>T	c.(1486-1488)CCC>TCC	p.P496S	PTPRZ1_uc003vjz.2_Missense_Mutation_p.P496S|PTPRZ1_uc011knt.1_5'UTR	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	496	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GGGTGATGTTCCCAATACATC	0.423													10	51					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121674425	121674425	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:121674425C>T	uc003vjy.2	+	17	5672	c.5277C>T	c.(5275-5277)ATC>ATT	p.I1759I	PTPRZ1_uc003vjz.2_Silent_p.I892I|PTPRZ1_uc011knt.1_Silent_p.I349I	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1759	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ACATAAATATCGTTGCCTGTA	0.393													4	52					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122047607	122047607	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:122047607G>A	uc010lkp.2	-	19	2896	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F	CADPS2_uc011knx.1_Silent_p.F286F|CADPS2_uc003vkg.3_Silent_p.F605F|CADPS2_uc010lkq.2_Silent_p.F905F	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	911	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CATTTCGGAGGAAATTATTAA	0.418													3	23					0	0	1	0	0
SLC13A1	6561	broad.mit.edu	37	7	122765624	122765624	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:122765624A>G	uc003vkm.2	-	11	1264	c.1239T>C	c.(1237-1239)ATT>ATC	p.I413I	SLC13A1_uc010lks.2_Silent_p.I289I	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	413						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	ATACTCAACCAATTTCTCCTG	0.358													17	67					0	0	1	0	0
IQUB	154865	broad.mit.edu	37	7	123097505	123097505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:123097505G>A	uc003vkn.2	-	12	2700	c.2123C>T	c.(2122-2124)TCC>TTC	p.S708F	IQUB_uc011kny.1_Missense_Mutation_p.S41F|IQUB_uc003vko.2_Missense_Mutation_p.S708F|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	708										ovary(3)|large_intestine(1)	4						GTTCCAGGGGGACCACTCCAG	0.453													7	198					0	0	1	0	0
IQUB	154865	broad.mit.edu	37	7	123109328	123109328	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:123109328C>T	uc003vkn.2	-	9	2098	c.1521G>A	c.(1519-1521)CTG>CTA	p.L507L	IQUB_uc003vko.2_Silent_p.L507L|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Silent_p.L507L	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	507										ovary(3)|large_intestine(1)	4						AGATATTTTTCAGCATAATGC	0.398													7	102					0	0	1	0	0
ASB15	142685	broad.mit.edu	37	7	123269153	123269153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:123269153C>T	uc003vku.1	+	10	1397	c.1105C>T	c.(1105-1107)CTT>TTT	p.L369F	ASB15_uc003vkw.1_Missense_Mutation_p.L369F	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	369	ANK 7.				intracellular signal transduction					skin(2)|lung(1)	3						CACAGAAGTCCTTCTGGCTGC	0.468													6	97					0	0	1	0	0
HYAL4	23553	broad.mit.edu	37	7	123508850	123508850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:123508850G>A	uc003vlc.2	+	3	1161	c.523G>A	c.(523-525)GGA>AGA	p.G175R	HYAL4_uc011knz.1_Missense_Mutation_p.G175R	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	175	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TTCCGATATGGGAAAGAATGT	0.388													14	71					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123594178	123594178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:123594178C>T	uc003vld.2	+	4	956	c.554C>T	c.(553-555)ACT>ATT	p.T185I	SPAM1_uc003vle.2_Missense_Mutation_p.T185I|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.T185I|SPAM1_uc010lku.2_Missense_Mutation_p.T185I	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	185					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ACAGAGGCCACTGAGAAAGCA	0.393													4	38					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173165	126173165	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126173165G>A	uc003vlr.2	-	8	2582	c.2271C>T	c.(2269-2271)ATC>ATT	p.I757I	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.I757I|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	757	Helical; Name=5; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCATCAAGAGGATACTGTATC	0.443										HNSCC(24;0.065)			3	45					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173369	126173369	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126173369G>A	uc003vlr.2	-	8	2378	c.2067C>T	c.(2065-2067)TTC>TTT	p.F689F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.F689F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	689	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CTGGACTAATGAACTTGGGCG	0.502										HNSCC(24;0.065)			4	75					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173531	126173531	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126173531G>A	uc003vlr.2	-	8	2216	c.1905C>T	c.(1903-1905)ATC>ATT	p.I635I	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.I635I|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	635	Helical; Name=2; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TTAAAAACGTGATTGAATAAC	0.468										HNSCC(24;0.065)			4	45					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126249424	126249424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126249424G>A	uc003vlr.2	-	7	1797	c.1486C>T	c.(1486-1488)CAT>TAT	p.H496Y	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.H496Y|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	496	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GCTTTTAGATGAAGCTGATTG	0.363										HNSCC(24;0.065)			16	186					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126410044	126410044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126410044G>A	uc003vlr.2	-	6	1543	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.S411F|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.S132F	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	411	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GTAAGCCATGGAATATACAGC	0.428										HNSCC(24;0.065)			8	25					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126542622	126542622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:126542622C>T	uc003vlr.2	-	5	1441	c.1130G>A	c.(1129-1131)AGG>AAG	p.R377K	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R377K|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.R98K	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	377	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATGACTGTTCCTTTTCCCATG	0.358										HNSCC(24;0.065)			7	71					0	0	1	0	0
RBM28	55131	broad.mit.edu	37	7	127961426	127961427	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:127961426_127961427GG>AA	uc003vmp.2	-	14	1570_1571	c.1455_1456CC>TT	c.(1453-1458)TCCCGA>TCTTGA	p.R486*	RBM28_uc003vmo.2_Nonsense_Mutation_p.R103*|RBM28_uc011koj.1_Nonsense_Mutation_p.R345*	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	486					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						AGCCTGGTTCGGGAGACAAAGA	0.47													5	71					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128477266	128477266	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128477266C>T	uc003vnz.3	+	3	863	c.654C>T	c.(652-654)GCC>GCT	p.A218A	FLNC_uc003voa.3_Silent_p.A218A	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	218	CH 2.|Actin-binding.			A -> S (in Ref. 1; AAD12245 and 2; AAF68195).	cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGGAGAACGCCCGGGAGGCCA	0.701													3	30					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128478688	128478688	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128478688C>T	uc003vnz.3	+	8	1451	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	FLNC_uc003voa.3_Silent_p.I414I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	414	Filamin 2.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTGTGGTGATCGTGGACCCAC	0.657													17	230					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128484784	128484784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128484784G>A	uc003vnz.3	+	21	3474	c.3265G>A	c.(3265-3267)GGG>AGG	p.G1089R	FLNC_uc003voa.3_Missense_Mutation_p.G1089R	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1089	Filamin 9.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGACACCAAGGGGGCTGGCAC	0.632													4	64					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128487751	128487752	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128487751_128487752GG>AA	uc003vnz.3	+	25	4498_4499	c.4289_4290GG>AA	c.(4288-4290)GGG>GAA	p.G1430E	FLNC_uc003voa.3_Missense_Mutation_p.G1430E	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1430	Filamin 12.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTCCTCACAGGGAGCCCGTTCC	0.644													8	132					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128488720	128488720	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128488720C>T	uc003vnz.3	+	27	4895	c.4686C>T	c.(4684-4686)TTC>TTT	p.F1562F	FLNC_uc003voa.3_Silent_p.F1562F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1562	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTGTGGAGTTCACCATCGACG	0.647													10	152					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128488743	128488743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128488743G>A	uc003vnz.3	+	27	4918	c.4709G>A	c.(4708-4710)GGC>GAC	p.G1570D	FLNC_uc003voa.3_Missense_Mutation_p.G1570D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1570	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGGGACGCGGGCGAGGGGTTG	0.657													8	156					0	0	1	0	0
IRF5	3663	broad.mit.edu	37	7	128582311	128582311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128582311G>A	uc003vog.2	+	2	297	c.176G>A	c.(175-177)GGA>GAA	p.G59E	IRF5_uc010llr.1_Missense_Mutation_p.G59E|IRF5_uc011kot.1_Missense_Mutation_p.G59E|IRF5_uc011kou.1_Missense_Mutation_p.G59E|IRF5_uc010lls.1_Missense_Mutation_p.G59E|IRF5_uc003voh.2_Missense_Mutation_p.G59E|IRF5_uc010llt.2_Missense_Mutation_p.G59E|IRF5_uc003voi.2_Missense_Mutation_p.G59E|IRF5_uc010llu.1_Missense_Mutation_p.G59E|IRF5_uc003vok.2_Missense_Mutation_p.G59E|IRF5_uc003voj.3_Missense_Mutation_p.G59E|IRF5_uc010llv.1_Missense_Mutation_p.G59E|IRF5_uc010llw.1_Missense_Mutation_p.G59E	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	59	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGCCAGGACGGAGATAACACC	0.582													4	74					0	0	1	0	0
TNPO3	23534	broad.mit.edu	37	7	128694744	128694744	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:128694744C>T	uc003vol.1	-	1	455	c.81G>A	c.(79-81)AAG>AAA	p.K27K	TNPO3_uc003vom.1_5'UTR|TNPO3_uc010lly.1_Silent_p.K27K|TNPO3_uc010llz.1_Silent_p.K27K|TPI1P2_uc003von.1_5'Flank	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	27					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						AGGCGCGCTCCTTTCCGCTGG	0.652													5	30					0	0	1	0	0
CPA2	1358	broad.mit.edu	37	7	129922006	129922006	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:129922006G>A	uc003vpq.2	+	10	1069	c.1050G>A	c.(1048-1050)GTG>GTA	p.V350V		NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	350					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					AGTACAAAGTGGGACCAATCT	0.458													5	95					0	0	1	0	0
CPA1	1357	broad.mit.edu	37	7	130025680	130025680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:130025680G>A	uc003vpx.2	+	9	1060	c.988G>A	c.(988-990)GAT>AAT	p.D330N	CPA1_uc003vpw.2_Missense_Mutation_p.D164N	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	330					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TTTTGTCCAGGATCAGCTTTC	0.567													4	35					0	0	1	0	0
TSGA13	114960	broad.mit.edu	37	7	130363994	130363994	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:130363994A>G	uc003vqi.2	-	5	843	c.386T>C	c.(385-387)ATG>ACG	p.M129T	TSGA13_uc003vqj.2_Missense_Mutation_p.M129T	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	129										ovary(2)	2	Melanoma(18;0.0435)					TCTGCTTACCATGACCTTGAG	0.428													27	108					0	0	1	0	0
TSGA13	114960	broad.mit.edu	37	7	130368455	130368455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:130368455C>T	uc003vqi.2	-	3	536	c.79G>A	c.(79-81)GGA>AGA	p.G27R	TSGA13_uc003vqj.2_Missense_Mutation_p.G27R	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	27										ovary(2)	2	Melanoma(18;0.0435)					ACAACCATTCCTTTCTCACGT	0.388													7	77					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131833327	131833327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:131833327C>T	uc003vra.3	-	26	4968	c.4739G>A	c.(4738-4740)CGA>CAA	p.R1580Q		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1580	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGTGTTCAGTCGCTTCCAATC	0.522													8	116					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131870220	131870220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:131870220C>T	uc003vra.3	-	16	3225	c.2996G>A	c.(2995-2997)CGA>CAA	p.R999Q		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	999	IPT/TIG 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGATGGAGATCGCCTGGAGGG	0.592													15	76					0	0	1	0	0
EXOC4	60412	broad.mit.edu	37	7	133622737	133622737	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:133622737C>T	uc003vrk.2	+	14	2156	c.2121C>T	c.(2119-2121)CTC>CTT	p.L707L	EXOC4_uc011kpo.1_Silent_p.L606L|EXOC4_uc003vrl.2_Silent_p.L317L|EXOC4_uc011kpp.1_Silent_p.L239L|EXOC4_uc011kpq.1_5'UTR	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	707					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TCAGTGACCTCAAAGCCTTGG	0.453													4	89					0	0	1	0	0
AKR1B10	57016	broad.mit.edu	37	7	134216769	134216769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:134216769G>A	uc003vrr.2	+	3	664	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	115					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						TGGCCACAGGGATTCAAGGTT	0.507													12	142					0	0	1	0	0
WDR91	29062	broad.mit.edu	37	7	134878080	134878080	+	Missense_Mutation	SNP	G	A	A	rs139844816		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:134878080G>A	uc003vsp.2	-	11	1624	c.1562C>T	c.(1561-1563)TCC>TTC	p.S521F	WDR91_uc010lmq.2_Missense_Mutation_p.S110F|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	521	WD 3.							p.S521F(1)		breast(2)|ovary(1)|skin(1)	4						GTCCACCTGGGAAGTGAGGCT	0.597													8	87					0	0	1	0	0
CNOT4	4850	broad.mit.edu	37	7	135078814	135078815	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:135078814_135078815CC>TT	uc003vsv.1	-	10	1789_1790	c.1482_1483GG>AA	c.(1480-1485)CAGGCA>CAAACA	p.A495T	CNOT4_uc003vss.2_Missense_Mutation_p.A492T|CNOT4_uc011kpz.1_Missense_Mutation_p.A492T|CNOT4_uc003vst.2_Missense_Mutation_p.A495T|CNOT4_uc003vsu.1_Missense_Mutation_p.A492T|CNOT4_uc011kpy.1_Missense_Mutation_p.A495T	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	495					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						TAGCGGGCTGCCTGGCCTGGAA	0.465													8	55					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136699707	136699707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:136699707C>T	uc003vtf.1	+	4	718	c.95C>T	c.(94-96)TCC>TTC	p.S32F	CHRM2_uc003vtg.1_Missense_Mutation_p.S32F|CHRM2_uc003vtj.1_Missense_Mutation_p.S32F|CHRM2_uc003vtk.1_Missense_Mutation_p.S32F|CHRM2_uc003vtl.1_Missense_Mutation_p.S32F|CHRM2_uc003vtm.1_Missense_Mutation_p.S32F|CHRM2_uc003vti.1_Missense_Mutation_p.S32F|CHRM2_uc003vto.1_Missense_Mutation_p.S32F|CHRM2_uc003vtn.1_Missense_Mutation_p.S32F|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	32	Helical; Name=1; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GTGGCTGGATCCCTCAGTTTG	0.423													7	68					0	0	1	0	0
AKR1D1	6718	broad.mit.edu	37	7	137776630	137776630	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:137776630G>A	uc003vtz.2	+	3	447	c.378G>A	c.(376-378)AAG>AAA	p.K126K	AKR1D1_uc011kqb.1_Silent_p.K126K|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Silent_p.K126K|AKR1D1_uc011kqf.1_Silent_p.K126K|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	126					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TGGCCTTTAAGGTGAGTTCAG	0.512													9	104					0	0	1	0	0
TRIM24	8805	broad.mit.edu	37	7	138235855	138235855	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138235855C>T	uc003vuc.2	+	8	1406	c.1191C>T	c.(1189-1191)TCC>TCT	p.S397S	TRIM24_uc003vub.2_Silent_p.S397S	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	397					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						GTGATGCATCCCCAGTGACCA	0.403													11	90					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138444500	138444500	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138444500C>T	uc003vuf.2	-	7	874	c.636G>A	c.(634-636)GTG>GTA	p.V212V	ATP6V0A4_uc003vug.2_Silent_p.V212V|ATP6V0A4_uc003vuh.2_Silent_p.V212V	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	212	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TTCCCACCGTCACAGGATCCT	0.527													5	61					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138453618	138453618	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138453618A>T	uc003vuf.2	-	4	436	c.198T>A	c.(196-198)CGT>CGA	p.R66R	ATP6V0A4_uc003vug.2_Silent_p.R66R|ATP6V0A4_uc003vuh.2_Silent_p.R66R	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	66	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CTTCCAGAAAACCTGAAGAAT	0.458													6	39					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138552730	138552730	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138552730G>A	uc011kql.1	-	15	4969	c.4920C>T	c.(4918-4920)ATC>ATT	p.I1640I	KIAA1549_uc011kqi.1_Silent_p.I424I|KIAA1549_uc003vuk.3_Silent_p.I1590I|KIAA1549_uc011kqj.1_Silent_p.I1640I|KIAA1549_uc011kqk.1_Silent_p.I424I	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1640						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTGGGCATCCGATGTAGGCTG	0.627			O	BRAF	pilocytic astrocytoma								5	51					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138566304	138566304	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138566304G>A	uc011kql.1	-	11	4108	c.4059C>T	c.(4057-4059)TTC>TTT	p.F1353F	KIAA1549_uc011kqi.1_Silent_p.F137F|KIAA1549_uc003vuk.3_Silent_p.F1303F|KIAA1549_uc011kqj.1_Silent_p.F1353F|KIAA1549_uc011kqk.1_Silent_p.F137F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1353						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TAGCAAAATCGAAGCCCTTCA	0.488			O	BRAF	pilocytic astrocytoma								4	24					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603198	138603198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138603198C>T	uc011kql.1	-	2	1223	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	KIAA1549_uc003vuk.3_Missense_Mutation_p.E342K|KIAA1549_uc011kqj.1_Missense_Mutation_p.E392K	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	392						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTATGCAATTCGGATGTTTTG	0.512			O	BRAF	pilocytic astrocytoma								10	87					0	0	1	0	0
UBN2	254048	broad.mit.edu	37	7	138946168	138946168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:138946168C>T	uc011kqr.1	+	6	1076	c.1076C>T	c.(1075-1077)CCA>CTA	p.P359L	UBN2_uc003vuv.2_Missense_Mutation_p.P82L	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	359										ovary(1)|skin(1)	2						AATAAACCCCCATGTGCTGCT	0.473													5	86					0	0	1	0	0
KLRG2	346689	broad.mit.edu	37	7	139168326	139168326	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139168326G>A	uc003vvb.2	-	1	132	c.63C>T	c.(61-63)CCC>CCT	p.P21P	KLRG2_uc010lnc.2_Silent_p.P21P	NM_198508	NP_940910	A4D1S0	KLRG2_HUMAN	killer cell lectin-like receptor subfamily G,	21	Pro-rich.					integral to membrane	sugar binding			central_nervous_system(1)	1	Melanoma(164;0.233)					GGCTTCCCACGGGCTCCATTG	0.726													4	27					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139717589	139717589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139717589C>T	uc011kqv.1	+	13	1788	c.1624C>T	c.(1624-1626)CAC>TAC	p.H542Y	TBXAS1_uc003vvh.2_Missense_Mutation_p.H496Y|TBXAS1_uc010lne.2_Missense_Mutation_p.H428Y|TBXAS1_uc003vvi.2_Missense_Mutation_p.H496Y|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Missense_Mutation_p.H476Y	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	495	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					GACACTGCTCCACGTGCTGCA	0.692													16	159					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139726123	139726123	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139726123T>A	uc003vvl.1	-	11	2528	c.1654A>T	c.(1654-1656)AAT>TAT	p.N552Y	PARP12_uc003vvk.1_Missense_Mutation_p.N338Y|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	552	PARP catalytic.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TTCCCTCCGTTCTGCTTCTGC	0.572													24	140					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139756722	139756722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139756722C>T	uc003vvl.1	-	3	1568	c.694G>A	c.(694-696)GAC>AAC	p.D232N	PARP12_uc003vvk.1_Missense_Mutation_p.D18N|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	232						nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TTCTTGATGTCATGTGCATTT	0.498													8	123					0	0	1	0	0
JHDM1D	80853	broad.mit.edu	37	7	139790936	139790936	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139790936G>A	uc003vvm.2	-	20	2788	c.2784C>T	c.(2782-2784)ATC>ATT	p.I928I	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	928					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TCAACTTAAGGATCTTCCCAA	0.443													16	96					0	0	1	0	0
JHDM1D	80853	broad.mit.edu	37	7	139819010	139819010	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:139819010C>T	uc003vvm.2	-	9	1153	c.1149G>A	c.(1147-1149)GAG>GAA	p.E383E	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	383	JmjC.				midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TTTTCTCCATCTCATAACACC	0.313													13	102					0	0	1	0	0
SLC37A3	84255	broad.mit.edu	37	7	140055487	140055487	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:140055487A>G	uc003vvo.2	-	7	765	c.599T>C	c.(598-600)GTT>GCT	p.V200A	SLC37A3_uc003vvp.2_Missense_Mutation_p.V200A|SLC37A3_uc010lnh.2_Missense_Mutation_p.V200A|SLC37A3_uc011kqz.1_RNA|SLC37A3_uc011kra.1_Missense_Mutation_p.V200A|SLC37A3_uc011krb.1_Missense_Mutation_p.V172A	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	200					carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					ATACTGAAGAACAGAAGAAGC	0.433													8	124					0	0	1	0	0
MKRN1	23608	broad.mit.edu	37	7	140156541	140156541	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:140156541G>A	uc003vvt.2	-	5	1122	c.897C>T	c.(895-897)TTC>TTT	p.F299F	MKRN1_uc003vvs.2_Silent_p.F235F|MKRN1_uc011krd.1_Silent_p.F33F|MKRN1_uc003vvv.3_Silent_p.F299F|MKRN1_uc003vvu.3_Silent_p.F235F	NM_013446	NP_038474	Q9UHC7	MKRN1_HUMAN	makorin ring finger protein 1 isoform 1	299	RING-type.						ligase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.00956)					AGAGGATCCCGAAGCGGCGCT	0.527													15	121					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140269450	140269450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:140269450C>T	uc010lnj.2	-	5	1680	c.1535G>A	c.(1534-1536)GGA>GAA	p.G512E	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.G512E|DENND2A_uc003vvw.2_Missense_Mutation_p.G512E|DENND2A_uc003vvx.2_Missense_Mutation_p.G512E	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	512										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TCTACCTTTTCCTGAGTTGCT	0.527													8	240					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140481408	140481408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:140481408G>A	uc003vwc.3	-	11	1461	c.1400C>T	c.(1399-1401)TCA>TTA	p.S467L		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	467	ATP (By similarity).|Protein kinase.		S -> A (in CFC syndrome).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.S467L(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TGTTCCAAATGATCCAGATCC	0.383		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				31	163					0	0	1	0	0
MRPS33	51650	broad.mit.edu	37	7	140710238	140710238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:140710238G>A	uc003vwd.3	-	2	352	c.196C>T	c.(196-198)CGA>TGA	p.R66*	MRPS33_uc003vwe.3_Nonsense_Mutation_p.R66*	NM_016071	NP_057155	Q9Y291	RT33_HUMAN	mitochondrial ribosomal protein S33	66					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0	Melanoma(164;0.00956)					CCAAGAAATCGGAGCGTCTGC	0.418													9	94					0	0	1	0	0
WEE2	494551	broad.mit.edu	37	7	141414102	141414102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141414102G>A	uc003vwn.2	+	2	842	c.436G>A	c.(436-438)GAG>AAG	p.E146K	FLJ40852_uc011krh.1_RNA|FLJ40852_uc010lnm.2_RNA|FLJ40852_uc010lnn.2_RNA|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	146					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CCTCAAGGATGAGATGACCTC	0.458													6	59					0	0	1	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490278	141490278	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141490278C>T	uc003vwr.1	+	1	262	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	39	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					TCAGAAAATTCAACTGGTCCT	0.458													8	89					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672580	141672580	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141672580A>G	uc003vwx.1	-	1	994	c.910T>C	c.(910-912)TTG>CTG	p.L304L		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	304	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					GCTCTCCTCAACTTGGCATTG	0.542													6	62					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673247	141673247	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141673247G>A	uc003vwx.1	-	1	327	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	81	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					TCAACTTCTGGAAGTGGGTAA	0.527													15	177					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673423	141673423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141673423C>T	uc003vwx.1	-	1	151	c.67G>A	c.(67-69)GTC>ATC	p.V23I		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	23	Helical; Name=1; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					AACTCCAGGACTGAAATGAAC	0.443													8	109					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141720809	141720809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141720809C>T	uc003vwy.2	+	5	538	c.484C>T	c.(484-486)CCA>TCA	p.P162S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	162	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCCTTCTTCACCAGTGTTTGG	0.333													3	41					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141721516	141721516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141721516G>A	uc003vwy.2	+	6	743	c.689G>A	c.(688-690)AGA>AAA	p.R230K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	230	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AAAGTGACCAGAAGAAGCAAC	0.458													14	75					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141722237	141722237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141722237G>A	uc003vwy.2	+	7	934	c.880G>A	c.(880-882)GGA>AGA	p.G294R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	294	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AACTCCCAATGGAGTAAGCTT	0.383													7	60					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141732659	141732659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141732659C>T	uc003vwy.2	+	14	1673	c.1619C>T	c.(1618-1620)TCG>TTG	p.S540L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	540	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTTGATGGTTCGGTCTCAGGA	0.368													3	25					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141750067	141750067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141750067G>A	uc003vwy.2	+	23	2674	c.2620G>A	c.(2620-2622)GAG>AAG	p.E874K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	874	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTTTTATGTGAGTTTTCTGT	0.403													7	117					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141754581	141754581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141754581G>A	uc003vwy.2	+	27	3241	c.3187G>A	c.(3187-3189)GAA>AAA	p.E1063K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1063	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAATCGGTATGAAGTTCCAGT	0.418													12	217					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141754588	141754588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141754588C>T	uc003vwy.2	+	27	3248	c.3194C>T	c.(3193-3195)CCA>CTA	p.P1065L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1065	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TATGAAGTTCCAGTCCCTCTG	0.443													19	205					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141754683	141754683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141754683C>T	uc003vwy.2	+	27	3343	c.3289C>T	c.(3289-3291)CGC>TGC	p.R1097C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1097	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GATTGAAATTCGCCGGAAGAG	0.498													7	64					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141758013	141758013	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141758013G>T	uc003vwy.2	+	31	3758	c.3704G>T	c.(3703-3705)CGG>CTG	p.R1235L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1235	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTGATTGGCCGGCCTGTGATG	0.438													43	282					2.27459e-33	2.30654e-33	1	1	0
MGAM	8972	broad.mit.edu	37	7	141758086	141758086	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141758086C>T	uc003vwy.2	+	31	3831	c.3777C>T	c.(3775-3777)ATC>ATT	p.I1259I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1259	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTCTGAGATCGCCAGCTTGT	0.498													18	263					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141794428	141794428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141794428G>A	uc003vwy.2	+	39	4681	c.4627G>A	c.(4627-4629)GAG>AAG	p.E1543K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1543	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGGCATGATGGAGTTCAGCCT	0.547													11	74					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141794439	141794439	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141794439C>T	uc003vwy.2	+	39	4692	c.4638C>T	c.(4636-4638)CTC>CTT	p.L1546L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1546	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGTTCAGCCTCTTCGGCATAT	0.522													5	81					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141794561	141794561	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141794561C>T	uc003vwy.2	+	40	4722	c.4668C>T	c.(4666-4668)ATC>ATT	p.I1556I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1556	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAGCAGATATCTGTGGGTTCT	0.483													3	40					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141796195	141796195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141796195G>A	uc003vwy.2	+	42	5038	c.4984G>A	c.(4984-4986)GTC>ATC	p.V1662I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1662	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGCCTTCCTGGTCAGCCCTGT	0.527													25	69					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141955402	141955402	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:141955402G>A	uc003vxb.2	-	2	452	c.132C>T	c.(130-132)GTC>GTT	p.V44V	TRYX3_uc003vxc.3_Silent_p.V44V	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	44	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GGTGGATCAGGACTCCAGCGC	0.493													15	75					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142000829	142000829	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142000829C>T	uc011kro.1	+	1	54	c.9C>T	c.(7-9)ACC>ACT	p.T3T						SubName: Full=V_segment translation product; Flags: Fragment;																		CCATGGATACCTGGCTCGTAT	0.488													3	75					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142460720	142460720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142460720G>A	uc003wak.2	+	5	610	c.593G>A	c.(592-594)GGT>GAT	p.G198D	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.G138D	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	198	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TCCCCCCAGGGTGATTCTGGT	0.527									Hereditary_Pancreatitis				32	94					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142562191	142562191	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142562191G>A	uc011kst.1	+	7	1420	c.633G>A	c.(631-633)GTG>GTA	p.V211V	EPHB6_uc011ksu.1_Silent_p.V211V|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_5'UTR|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	211	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GCTTCTACGTGGCCTTCCAGG	0.652													24	216					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142572287	142572287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142572287C>T	uc003wbx.1	-	11	1625	c.1409G>A	c.(1408-1410)CGA>CAA	p.R470Q	TRPV6_uc003wbw.1_Missense_Mutation_p.R256Q|TRPV6_uc010lou.1_Missense_Mutation_p.R341Q	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	470	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CTGGAATCCTCGGGCGAAGTA	0.557													7	144					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142573242	142573242	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142573242G>A	uc003wbx.1	-	8	1317	c.1101C>T	c.(1099-1101)CTC>CTT	p.L367L	TRPV6_uc003wbw.1_Silent_p.L153L|TRPV6_uc010lou.1_Silent_p.L238L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	367	Extracellular (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TCTGCTGTAAGAGGGTGTTGT	0.562													22	97					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142574314	142574314	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142574314G>A	uc003wbx.1	-	6	825	c.609C>T	c.(607-609)CTC>CTT	p.L203L	TRPV6_uc003wbw.1_5'UTR|TRPV6_uc010lou.1_Silent_p.L74L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	203	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCTGGAGGATGAGGATGTGTA	0.572													21	182					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142605689	142605689	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142605689G>A	uc003wby.1	-	15	2445	c.2181C>T	c.(2179-2181)TAC>TAT	p.Y727Y		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	727	Cytoplasmic (Potential).|Involved in Ca(2+)-dependent inactivation (By similarity).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ATCAAAAATGGTAGACCTCCT	0.537													5	112					0	0	1	0	0
C7orf34	135927	broad.mit.edu	37	7	142636764	142636764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142636764C>T	uc003wca.2	+	1	162	c.121C>T	c.(121-123)CCT>TCT	p.P41S		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	16						extracellular region					0	Melanoma(164;0.059)					GTTCCTGGTTCCTATCTTGCT	0.632													5	60					0	0	1	0	0
C7orf34	135927	broad.mit.edu	37	7	142636842	142636842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142636842C>T	uc003wca.2	+	1	240	c.199C>T	c.(199-201)CCC>TCC	p.P67S		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	42						extracellular region					0	Melanoma(164;0.059)					AGAGAAAACGCCCTCTGCAGG	0.547													3	48					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142655418	142655418	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142655418A>T	uc003wcb.2	-	5	708	c.498T>A	c.(496-498)ACT>ACA	p.T166T		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	166	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TGAGGGGACCAGTCCCTGCAG	0.483													23	94					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142749488	142749488	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142749488C>T	uc011ksv.1	+	1	51	c.51C>T	c.(49-51)TCC>TCT	p.S17S		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					GCTTCTCCTCCTTTGGTGAGC	0.458													5	133					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142880857	142880857	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:142880857A>G	uc011ksw.1	+	1	346	c.346A>G	c.(346-348)AGT>GGT	p.S116G		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	116	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					ATTCAAAATAAGTTTTATATT	0.373													5	71					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143048914	143048914	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143048914C>T	uc003wcr.1	+	23	2910	c.2823C>T	c.(2821-2823)TCC>TCT	p.S941S	CLCN1_uc011ktc.1_Silent_p.S553S	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	941	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCCCTCTCTCCCTGGCCCCAG	0.662													4	57					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143092430	143092431	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143092430_143092431CC>TT	uc003wcz.2	-	12	2151_2152	c.2064_2065GG>AA	c.(2062-2067)CTGGAA>CTAAAA	p.E689K		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	689	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				ACGACGCCTTCCAGATGCAGAA	0.545											OREG0018405	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	669					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143095028	143095028	+	Missense_Mutation	SNP	G	A	A	rs142265364		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143095028G>A	uc003wcz.2	-	8	1687	c.1600C>T	c.(1600-1602)CGG>TGG	p.R534W		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	534	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				GGGCTGGTCCGAAACTCATGA	0.562													10	99					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140839	143140840	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143140839_143140840CC>TT	uc011ktg.1	+	1	294_295	c.294_295CC>TT	c.(292-297)TTCCAG>TTTTAG	p.Q99*	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	99	Helical; Name=3; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TTCTAGCTTTCCAGTGGGACTT	0.48													8	108					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175803	143175803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143175803C>T	uc003wdc.1	+	1	838	c.838C>T	c.(838-840)CCC>TCC	p.P280S	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	280	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					ATCTGTCCATCCCTTCATCCT	0.498													5	54					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657112	143657112	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143657112C>T	uc003wds.1	+	1	93	c.49C>T	c.(49-51)CTG>TTG	p.L17L		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TCTCCTCGGCCTGTCCAGTGA	0.453													14	197					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657390	143657390	+	Silent	SNP	G	A	A	rs150878069		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143657390G>A	uc003wds.1	+	1	371	c.327G>A	c.(325-327)GGG>GGA	p.G109G		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G109G(1)|p.G109E(1)		skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CCTTGGGTGGGATTGAGTTTG	0.537													12	128					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657706	143657706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143657706C>T	uc003wds.1	+	1	687	c.643C>T	c.(643-645)CTT>TTT	p.L215F		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CTGCCTGGTTCTTTTGTCCTA	0.502													4	109					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747940	143747940	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143747940G>A	uc011ktw.1	+	1	446	c.446G>A	c.(445-447)TGG>TAG	p.W149*		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GTCACTTCTTGGGCATGTGGT	0.522													32	194					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771361	143771361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143771361C>T	uc011ktx.1	+	1	49	c.49C>T	c.(49-51)CCC>TCC	p.P17S		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ACTGGGATTTCCCATTGGCCC	0.488													11	111					0	0	1	0	0
OR2A12	346525	broad.mit.edu	37	7	143792875	143792875	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143792875G>A	uc011kty.1	+	1	675	c.675G>A	c.(673-675)TTG>TTA	p.L225L		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TGGCCATCTTGAGGATCCAGT	0.587													19	217					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143806950	143806950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143806950C>T	uc011ktz.1	+	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					AGAACCATCTCCTTTGTTCCA	0.423													14	116					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143807172	143807172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143807172C>T	uc011ktz.1	+	1	497	c.497C>T	c.(496-498)CCC>CTC	p.P166L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CTAAGGTTGCCCTTCTGTGGG	0.522													8	77					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143807590	143807590	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143807590G>A	uc011ktz.1	+	1	915	c.915G>A	c.(913-915)CAG>CAA	p.Q305Q		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GAGCACTCCAGAGGAAGAGGT	0.443													7	98					0	0	1	0	0
OR2A14	135941	broad.mit.edu	37	7	143826330	143826330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143826330G>A	uc011kua.1	+	1	125	c.125G>A	c.(124-126)GGG>GAG	p.G42E		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	42	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTGGGGAATGGGGTCATCTTT	0.502													19	174					0	0	1	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882692	143882692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143882692C>T	uc010lpc.2	+	1	2145	c.2096C>T	c.(2095-2097)GCT>GTT	p.A699V		NM_198495	NP_940897	Q8IX94	CTGE4_HUMAN	CTAGE family, member 4	699	Pro-rich.					integral to membrane					0						CCACCTCTTGCTCCAATCAGC	0.498													11	284					0	0	1	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882754	143882754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143882754C>T	uc010lpc.2	+	1	2207	c.2158C>T	c.(2158-2160)CCT>TCT	p.P720S		NM_198495	NP_940897	Q8IX94	CTGE4_HUMAN	CTAGE family, member 4	720	Pro-rich.					integral to membrane					0						AAGAGGACCTCCTTTCCCCCC	0.532													9	231					0	0	1	0	0
OR2A1	346528	broad.mit.edu	37	7	143929691	143929691	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:143929691C>T	uc011kub.1	-	1	246	c.246G>A	c.(244-246)GCG>GCA	p.A82A		NM_001005287	NP_001005287	Q8NGT9	OR2A1_HUMAN	olfactory receptor, family 2, subfamily A,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.14)					GCAGGAGGTTCGCCAGCATCT	0.572													8	77					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144060423	144060423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:144060423C>T	uc003wel.2	+	2	779	c.661C>T	c.(661-663)CTC>TTC	p.L221F	ARHGEF5_uc003wek.2_Missense_Mutation_p.L221F	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	221					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					AAGTCAAGGGCTCTTGCATCC	0.572													9	315					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144077134	144077134	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:144077134G>A	uc003wel.2	+	15	4897	c.4779G>A	c.(4777-4779)GTG>GTA	p.V1593V	ARHGEF5_uc003wem.2_Silent_p.V394V	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1593					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					TACAGCTGGTGGAACAGCAAG	0.542													7	101					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098981	144098981	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:144098981C>T	uc011kue.1	-	3	273	c.273G>A	c.(271-273)GGG>GGA	p.G91G		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	91					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GTTCCCTTTTCCCAGACACCA	0.458													8	69					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146471453	146471453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:146471453C>T	uc003weu.1	+	2	704	c.188C>T	c.(187-189)GCC>GTC	p.A63V		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	63	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCCGGCTATGCCAAGATAAAC	0.368										HNSCC(39;0.1)			6	47					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536811	146536811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:146536811G>A	uc003weu.1	+	3	733	c.217G>A	c.(217-219)GGA>AGA	p.G73R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	73	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGTGCTGGGGGATGGTCTCC	0.428										HNSCC(39;0.1)			8	91					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146741093	146741093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:146741093G>A	uc003weu.1	+	4	1013	c.497G>A	c.(496-498)TGG>TAG	p.W166*		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	166	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCTCTGGATTGGAATGGAGAA	0.433										HNSCC(39;0.1)			12	188					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092834	147092834	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:147092834C>T	uc003weu.1	+	10	2148	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	544	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGGGAAGTTTCGCGAATGTCA	0.438										HNSCC(39;0.1)			9	132					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147844743	147844743	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:147844743C>T	uc003weu.1	+	17	3231	c.2715C>T	c.(2713-2715)ATC>ATT	p.I905I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	905	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGCAGCAGATCCGCAAGGCCC	0.567										HNSCC(39;0.1)			5	102					0	0	1	0	0
ZNF212	7988	broad.mit.edu	37	7	148950994	148950994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:148950994C>T	uc003wfp.2	+	5	1072	c.976C>T	c.(976-978)CGC>TGC	p.R326C		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	326	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			GATCACCTTCCGCTATAAGCA	0.587													5	65					0	0	1	0	0
ZNF777	27153	broad.mit.edu	37	7	149129460	149129460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:149129460G>A	uc003wfv.2	-	6	2066	c.1903C>T	c.(1903-1905)CCC>TCC	p.P635S		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	635					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CACTTGTAGGGCTTAGGGCCA	0.662													23	327					0	0	1	0	0
ZNF746	155061	broad.mit.edu	37	7	149172482	149172482	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:149172482G>A	uc003wfw.2	-	7	1199	c.928C>T	c.(928-930)CTG>TTG	p.L310L	ZNF746_uc010lpi.2_Silent_p.L311L	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	310					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGTCCAAACAGGGTCCCGTGA	0.557													3	75					0	0	1	0	0
ZNF746	155061	broad.mit.edu	37	7	149172508	149172508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:149172508G>A	uc003wfw.2	-	7	1173	c.902C>T	c.(901-903)CCT>CTT	p.P301L	ZNF746_uc010lpi.2_Missense_Mutation_p.P302L	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	301					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TAGGTCAGTAGGATGTACGGG	0.532													5	88					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149497063	149497063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:149497063C>T	uc010lpk.2	+	49	7103	c.7103C>T	c.(7102-7104)CCA>CTA	p.P2368L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2368					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGGTGCCCCCACACCCTGTG	0.617													4	92					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149515026	149515026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:149515026G>A	uc010lpk.2	+	81	11416	c.11416G>A	c.(11416-11418)GAC>AAC	p.D3806N		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3806					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTCCCTGGACGACTGCTTCGA	0.692													11	103					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171108	150171108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150171108G>A	uc003whj.2	+	4	1021	c.691G>A	c.(691-693)GAA>AAA	p.E231K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	231						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AGGCCCAAGGGAAAGGCAGCT	0.527													5	90					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150174830G>A	uc003whj.2	+	5	2290	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	654	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCCAAGCCGAAAAACTCCT	0.463													8	77					0	0	1	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217378	150217378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150217378G>A	uc003whk.2	+	2	446	c.316G>A	c.(316-318)GAG>AAG	p.E106K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	106							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCGCTACACAGAGGAGGAGCA	0.547													5	74					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269404	150269404	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150269404C>T	uc003whl.2	+	3	328	c.246C>T	c.(244-246)GTC>GTT	p.V82V	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Silent_p.V96V	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	82							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGAACTTGTCGTAGTTGACA	0.498													6	37					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150324822	150324822	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150324822C>T	uc003whn.2	-	3	1288	c.864G>A	c.(862-864)GGG>GGA	p.G288G	GIMAP6_uc003whm.2_Silent_p.G208G	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	288							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGTCAGCCTTCCCCAGCAGGC	0.582													4	118					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389765	150389765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150389765G>A	uc003who.2	+	3	479	c.391G>A	c.(391-393)GAG>AAG	p.E131K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	131						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGGTGAAGGAGATCTTTGG	0.522													4	69					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389984	150389984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150389984G>A	uc003who.2	+	3	698	c.610G>A	c.(610-612)GAT>AAT	p.D204N	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	204						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGTATTGAGGATCTGTTGAT	0.453													6	179					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417459	150417459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150417459C>T	uc003whq.2	+	3	454	c.367C>T	c.(367-369)CGG>TGG	p.R123W	GIMAP1_uc003whp.2_Missense_Mutation_p.R131W	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	123	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAGTTGGGTCGGTTCACCGC	0.622													4	44					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439527	150439527	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150439527C>T	uc003whr.1	+	3	652	c.300C>T	c.(298-300)ATC>ATT	p.I100I	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	100	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACAAGAACATCGGGGACTGCT	0.582													9	106					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150493513	150493513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150493513G>A	uc003wht.3	-	2	311	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	TMEM176B_uc003whu.3_Missense_Mutation_p.H49Y|TMEM176B_uc003whv.3_Missense_Mutation_p.H49Y|TMEM176B_uc003whw.3_Missense_Mutation_p.H49Y	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	49					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCCCAGGGTGAAAAAGAAAC	0.562													6	83					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150493570	150493570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150493570C>T	uc003wht.3	-	2	254	c.88G>A	c.(88-90)GAG>AAG	p.E30K	TMEM176B_uc003whu.3_Missense_Mutation_p.E30K|TMEM176B_uc003whv.3_Missense_Mutation_p.E30K|TMEM176B_uc003whw.3_Missense_Mutation_p.E30K	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	30					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAGCTGACTCCTGGTGGATG	0.532													10	69					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150501559	150501559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150501559G>A	uc003whx.1	+	6	743	c.665G>A	c.(664-666)GGG>GAG	p.G222E		NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	222						integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAACCAAAGGGGTGAGTCCC	0.552													8	89					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150553935	150553935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150553935G>A	uc003why.1	+	3	4595	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	ABP1_uc003whz.1_Missense_Mutation_p.R126Q|ABP1_uc003wia.1_Missense_Mutation_p.R126Q	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	126					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TGCTACATGCGAGCACTGTCC	0.637													7	87					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150656745	150656745	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150656745G>A	uc003wic.2	-	3	400	c.387C>T	c.(385-387)TTC>TTT	p.F129F	KCNH2_uc011kux.1_Silent_p.F33F|KCNH2_uc003wie.2_Silent_p.F129F	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	129	Cytoplasmic (Potential).|PAC.				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCACCACCTCGAAATTGAGGA	0.592													7	92					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150656780	150656780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150656780C>T	uc003wic.2	-	3	365	c.352G>A	c.(352-354)GAG>AAG	p.E118K	KCNH2_uc011kux.1_Missense_Mutation_p.E22K|KCNH2_uc003wie.2_Missense_Mutation_p.E118K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	118	Cytoplasmic (Potential).|PAC.				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GCCCCATCCTCGTTCTTCACG	0.597													14	101					0	0	1	0	0
AGAP3	116988	broad.mit.edu	37	7	150838997	150838997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150838997C>T	uc003wjg.1	+	14	1820	c.1817C>T	c.(1816-1818)TCG>TTG	p.S606L	AGAP3_uc003wje.1_Missense_Mutation_p.S275L|AGAP3_uc003wjj.1_Missense_Mutation_p.S105L|AGAP3_uc003wjk.1_Missense_Mutation_p.S24L	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	570	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GCAGAGGAGTCGTTTGAATTT	0.612													4	111					0	0	1	0	0
CHPF2	54480	broad.mit.edu	37	7	150934798	150934798	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:150934798G>A	uc003wjr.1	+	4	2863	c.1350G>A	c.(1348-1350)TTG>TTA	p.L450L	CHPF2_uc003wjq.1_Silent_p.L442L|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	450	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						ACCTGCTGTTGGAATGTGTGA	0.647													9	116					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414157	157414157	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:157414157C>T	uc003wno.2	-	15	2362	c.2241G>A	c.(2239-2241)AAG>AAA	p.K747K	PTPRN2_uc003wnp.2_Silent_p.K730K|PTPRN2_uc003wnq.2_Silent_p.K718K|PTPRN2_uc003wnr.2_Silent_p.K709K|PTPRN2_uc011kwa.1_Silent_p.K770K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	747	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTTCCCACTCCTTCTCCAGCC	0.627													18	334					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959919	157959919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:157959919G>A	uc003wno.2	-	6	735	c.614C>T	c.(613-615)CCT>CTT	p.P205L	PTPRN2_uc003wnp.2_Missense_Mutation_p.P188L|PTPRN2_uc003wnq.2_Missense_Mutation_p.P205L|PTPRN2_uc003wnr.2_Missense_Mutation_p.P167L|PTPRN2_uc011kwa.1_Missense_Mutation_p.P228L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	205	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGACCCGGGAGGGTAGGTCAG	0.632													8	67					0	0	1	0	0
NCAPG2	54892	broad.mit.edu	37	7	158457348	158457348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:158457348G>A	uc003wnv.1	-	14	1719	c.1574C>T	c.(1573-1575)TCT>TTT	p.S525F	NCAPG2_uc010lqu.1_Missense_Mutation_p.S317F|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.S525F|NCAPG2_uc011kwe.1_Missense_Mutation_p.S525F|NCAPG2_uc011kwc.1_Missense_Mutation_p.S26F|NCAPG2_uc011kwd.1_Missense_Mutation_p.S26F	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	525					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		AGGCAGGAAAGAATTAAAGAT	0.547													9	162					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1513946	1513946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:1513946G>A	uc003wpl.2	+	3	1185	c.1088G>A	c.(1087-1089)GGG>GAG	p.G363E	DLGAP2_uc003wpm.2_Missense_Mutation_p.G363E	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	442					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		AAAGCCATGGGGGACGAGGAG	0.567													3	31					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1844594	1844594	+	Silent	SNP	C	T	T	rs141646890		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:1844594C>T	uc003wpr.2	+	14	1714	c.1536C>T	c.(1534-1536)CCC>CCT	p.P512P	ARHGEF10_uc003wpq.1_Silent_p.P537P|ARHGEF10_uc003wps.2_Silent_p.P474P|ARHGEF10_uc003wpt.2_Silent_p.P388P|ARHGEF10_uc003wpv.2_Silent_p.P245P|ARHGEF10_uc010lre.2_Silent_p.P192P	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	537	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CCACAAAGCCCGCTTTTCTTG	0.393													10	62					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2057203	2057203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:2057203G>A	uc003wpx.3	+	25	3199	c.3061G>A	c.(3061-3063)GAA>AAA	p.E1021K	MYOM2_uc011kwi.1_Missense_Mutation_p.E446K	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1021					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TCTGAAATCGGAATTAGCTTA	0.413													7	45					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2820859	2820859	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:2820859G>A	uc011kwk.1	-	60	9732	c.9342C>T	c.(9340-9342)TTC>TTT	p.F3114F	CSMD1_uc011kwj.1_Silent_p.F2443F|CSMD1_uc010lrg.2_Silent_p.F1005F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3114	Sushi 25.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGCCCCAGCGGAAATCACTTC	0.562													18	180					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3019773	3019773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:3019773G>A	uc011kwk.1	-	38	6145	c.5755C>T	c.(5755-5757)CCA>TCA	p.P1919S	CSMD1_uc011kwj.1_Missense_Mutation_p.P1311S|CSMD1_uc003wqe.2_Missense_Mutation_p.P1075S|CSMD1_uc010lrg.2_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1919	Sushi 11.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGGAGGGCTGGTTCTTGGCAT	0.448													3	19					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3081376	3081376	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:3081376C>T	uc011kwk.1	-	28	4752	c.4362G>A	c.(4360-4362)GGG>GGA	p.G1454G	CSMD1_uc011kwj.1_Silent_p.G846G|CSMD1_uc003wqe.2_Silent_p.G610G	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1454	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCGTCAGATTCCCTCCACAAG	0.502													3	19					0	0	1	0	0
DEFA6	1671	broad.mit.edu	37	8	6782392	6782392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:6782392G>A	uc003wqt.2	-	2	292	c.251C>T	c.(250-252)TCC>TTC	p.S84F		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	84					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GGTCCCATAGGAATATTCTGT	0.443													7	99					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8176168	8176168	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:8176168G>A	uc003wsh.3	-	5	3717	c.3717C>T	c.(3715-3717)ATC>ATT	p.I1239I		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1239	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AAGCAGACACGATCTCGGGGG	0.617													5	68					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8185535	8185536	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:8185535_8185536GG>AA	uc003wsh.3	-	4	2756_2757	c.2756_2757CC>TT	c.(2755-2757)TCC>TTT	p.S919F		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	919							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CGCTCAGCTGGGAGGATGAGGC	0.678													4	51					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8185662	8185662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:8185662G>A	uc003wsh.3	-	4	2630	c.2630C>T	c.(2629-2631)TCC>TTC	p.S877F		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	877							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CAGAGGATCGGAAGAGGAGAA	0.602													27	359					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8185786	8185786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:8185786G>A	uc003wsh.3	-	4	2506	c.2506C>T	c.(2506-2508)CCC>TCC	p.P836S		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	836							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CCGGGCTTGGGGGAGCCTTGG	0.612													10	178					0	0	1	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998971	8998971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:8998971G>A	uc003wsn.3	-	2	356	c.191C>T	c.(190-192)TCC>TTC	p.S64F	PPP1R3B_uc003wso.3_Missense_Mutation_p.S63F	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	64					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		GTCTGCGAAGGACACCCGCTT	0.537													10	92					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10396104	10396104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:10396104C>T	uc003wta.2	+	5	875	c.860C>T	c.(859-861)TCG>TTG	p.S287L	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	287	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATATACACCTCGTTGGTGAAC	0.527													5	112					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10470392	10470392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:10470392C>T	uc003wtc.2	-	4	1445	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	406					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTCCAGATTTCATACTTGGGC	0.672													5	92					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10755512	10755512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:10755512G>A	uc003wtk.1	-	3	1903	c.1876C>T	c.(1876-1878)CGA>TGA	p.R626*		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	626						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GGTCCGTCTCGATATCGAATG	0.473													13	114					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10756350	10756350	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:10756350C>T	uc003wtk.1	-	3	1065	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	346						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TCTTGTCGTCCCTGGAGTCCC	0.557													8	120					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16026106	16026106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:16026106G>A	uc003wwz.2	-	4	689	c.491C>T	c.(490-492)TCC>TTC	p.S164F	MSR1_uc010lsu.2_Missense_Mutation_p.S182F|MSR1_uc003wxa.2_Missense_Mutation_p.S164F|MSR1_uc003wxb.2_Missense_Mutation_p.S164F|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	164	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CTGGACTGAGGAAAACAAGGT	0.388													11	108					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17417918	17417918	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:17417918G>A	uc011kyc.1	+	9	1549	c.1380G>A	c.(1378-1380)TCG>TCA	p.S460S	SLC7A2_uc011kyd.1_Silent_p.S499S|SLC7A2_uc011kye.1_Silent_p.S500S|SLC7A2_uc011kyf.1_Silent_p.S460S	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	460	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	GGGTAACCTCGAAGAGTGAGT	0.542													8	59					0	0	1	0	0
NAT2	10	broad.mit.edu	37	8	18258356	18258356	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:18258356C>T	uc003wyw.1	+	2	950	c.843C>T	c.(841-843)CCC>CCT	p.P281P		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	281					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		ATCTCGTGCCCAAACCTGGTG	0.308									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				5	59					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22051673	22051673	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:22051673T>A	uc003xbg.2	+	10	1527	c.1283T>A	c.(1282-1284)TTT>TAT	p.F428Y	BMP1_uc003xba.2_Missense_Mutation_p.F428Y|BMP1_uc003xbb.2_Missense_Mutation_p.F428Y|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Missense_Mutation_p.F177Y|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Missense_Mutation_p.F177Y|BMP1_uc011kzc.1_Missense_Mutation_p.F177Y|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	428	CUB 1.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		AAGGGCTTCTTTGCAGTCTAC	0.587													4	86					0	0	1	0	0
BIN3	55909	broad.mit.edu	37	8	22481492	22481492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:22481492G>A	uc003xcl.2	-	8	648	c.551C>T	c.(550-552)CCG>CTG	p.P184L	BIN3_uc003xck.2_Missense_Mutation_p.P136L|BIN3_uc010ltw.2_Missense_Mutation_p.P130L	NM_018688	NP_061158	Q9NQY0	BIN3_HUMAN	bridging integrator 3	184	BAR.				actin filament organization|barrier septum formation|cell cycle|protein localization|unidimensional cell growth	cytoplasm|cytoskeleton	cytoskeletal adaptor activity				0		Prostate(55;0.0424)|Breast(100;0.102)|all_epithelial(46;0.143)		BRCA - Breast invasive adenocarcinoma(99;0.00664)|Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		GTAGAAGCGCGGCATCTCCTC	0.617													3	23					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22972231	22972231	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:22972231C>T	uc003xcy.2	+	3	429	c.228C>T	c.(226-228)ACC>ACT	p.T76T	TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	76	TNFR-Cys 2.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TGGATTACACCAACGCTTCCA	0.483													17	141					0	0	1	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049444	23049444	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:23049444C>T	uc003xda.2	-	10	1235	c.1170G>A	c.(1168-1170)ACG>ACA	p.T390T		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	390	Cytoplasmic (Potential).|Death.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		TCTCATTTTTCGTGAGGTCCA	0.522													7	89					0	0	1	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23059356	23059356	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:23059356G>A	uc003xda.2	-	4	659	c.594C>T	c.(592-594)GAC>GAT	p.D198D		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	198	TNFR-Cys 3.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		CAGCAGAATTGTCATTCCGGA	0.512													8	76					0	0	1	0	0
ENTPD4	9583	broad.mit.edu	37	8	23290577	23290577	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:23290577G>A	uc003xdl.2	-	13	1877	c.1713C>T	c.(1711-1713)TTC>TTT	p.F571F	ENTPD4_uc011kzu.1_Intron|ENTPD4_uc003xdm.2_Silent_p.F563F	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	571	Helical; (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		GCACCACCAGGAAGCAGCCAG	0.652													7	128					0	0	1	0	0
STC1	6781	broad.mit.edu	37	8	23702327	23702327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:23702327C>T	uc003xdw.1	-	4	984	c.700G>A	c.(700-702)GAC>AAC	p.D234N		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	234					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAGGGAGAGTCCTCCTCACCT	0.527													4	43					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24199120	24199120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:24199120G>A	uc003xdy.2	+	16	1763	c.1680G>A	c.(1678-1680)ATG>ATA	p.M560I	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.M247I	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	560	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GTGATACCATGTGTGGGAAGT	0.383													13	200					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24207478	24207478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:24207478G>A	uc003xdy.2	+	19	2175	c.2092G>A	c.(2092-2094)GAT>AAT	p.D698N	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.D385N	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	698	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GCAGAAGAAAGATCAGAGGTG	0.413													6	69					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24255195	24255195	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:24255195G>A	uc003xdz.2	+	7	848	c.628_splice	c.e7-1	p.K210_splice	ADAMDEC1_uc010lub.2_Splice_Site_p.K131_splice|ADAMDEC1_uc011lab.1_Splice_Site_p.K131_splice	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1						integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TCTTTGTAAAGAAAGAAGACT	0.348													4	53					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24324428	24324428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:24324428C>T	uc003xeb.2	+	6	619	c.506C>T	c.(505-507)TCC>TTC	p.S169F	ADAM7_uc003xea.1_Missense_Mutation_p.S169F	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	169	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GCCAATTATTCCTGTACAGAG	0.373													5	123					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24772027	24772027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:24772027G>A	uc003xed.3	+	1	754	c.721G>A	c.(721-723)GAG>AAG	p.E241K	NEFM_uc011lac.1_Missense_Mutation_p.E241K|NEFM_uc010lue.2_5'Flank|uc010luc.1_Missense_Mutation_p.S14F	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	241	Rod.|Coil 1B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CCACGAGGAGGAGGTGGCCGA	0.602													5	52					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27296617	27296617	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:27296617C>T	uc003xfn.1	+	24	2521	c.1713C>T	c.(1711-1713)TCC>TCT	p.S571S	PTK2B_uc003xfo.1_Silent_p.S571S|PTK2B_uc003xfp.1_Silent_p.S571S|PTK2B_uc003xfq.1_Silent_p.S571S|PTK2B_uc003xfr.1_Silent_p.S317S	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	571	Protein kinase.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TTGGTCTTTCCCGGTACATTG	0.557													13	99					0	0	1	0	0
CHRNA2	1135	broad.mit.edu	37	8	27319169	27319169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:27319169G>A	uc010lur.2	-	7	2176	c.1567C>T	c.(1567-1569)CCG>TCG	p.P523S	CHRNA2_uc011lal.1_Missense_Mutation_p.P508S|CHRNA2_uc010lus.2_Missense_Mutation_p.P325S	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	523						cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	GCTAGGAACGGAGGCAGAAAG	0.572													12	109					0	0	1	0	0
EPHX2	2053	broad.mit.edu	37	8	27399008	27399008	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:27399008C>T	uc003xfu.2	+	16	1479	c.1398C>T	c.(1396-1398)TAC>TAT	p.Y466Y	EPHX2_uc010luu.2_Silent_p.Y434Y|EPHX2_uc010luv.2_Silent_p.Y400Y|EPHX2_uc003xfv.2_Silent_p.Y413Y|EPHX2_uc010luw.2_Silent_p.Y400Y	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	466	Epoxide hydrolase.	Proton donor.			aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	TAAACTGGTACCGAAACATGG	0.537													8	92					0	0	1	0	0
CLU	1191	broad.mit.edu	37	8	27455978	27455978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:27455978G>A	uc003xfw.1	-	7	1397	c.1339C>T	c.(1339-1341)CGG>TGG	p.R447W	CLU_uc010lux.1_Missense_Mutation_p.R312W|CLU_uc003xfx.1_Missense_Mutation_p.R447W|CLU_uc003xfy.1_Missense_Mutation_p.R458W|CLU_uc003xfz.1_Missense_Mutation_p.R499W	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	447	Nuclear localization signal (By similarity).				chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		CCTGCTTACCGGTGCTTTTTG	0.547													5	60					0	0	1	0	0
KIF13B	23303	broad.mit.edu	37	8	28984712	28984712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:28984712C>T	uc003xhh.3	-	25	3208	c.3149G>A	c.(3148-3150)TGT>TAT	p.C1050Y	uc003xhi.1_Intron	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1050					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		AGACAGTATACATTCTTCCAT	0.458													10	93					0	0	1	0	0
GTF2E2	2961	broad.mit.edu	37	8	30492628	30492628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:30492628C>T	uc003xig.2	-	3	432	c.179G>A	c.(178-180)GGA>GAA	p.G60E		NM_002095	NP_002086	P29084	T2EB_HUMAN	general transcription factor IIE, polypeptide 2,	60					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIE complex	DNA binding|protein binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.113)|Kidney(114;0.135)		GTTAAATGATCCATTGCTATG	0.323													4	45					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	32613921	32613921	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:32613921G>A	uc003xiv.2	+	9	1321	c.804G>A	c.(802-804)AAG>AAA	p.K268K	NRG1_uc011lbf.1_Silent_p.K265K|NRG1_uc010lvo.2_Silent_p.K265K|NRG1_uc003xiu.2_Silent_p.K273K|NRG1_uc003xiw.2_Silent_p.K265K|NRG1_uc003xit.2_Silent_p.K268K|NRG1_uc010lvr.2_Silent_p.K10K|NRG1_uc010lvs.2_Silent_p.K10K|NRG1_uc010lvp.2_Silent_p.K222K|NRG1_uc010lvq.2_Silent_p.K205K|NRG1_uc011lbg.1_Silent_p.K114K|NRG1_uc011lbh.1_Silent_p.K111K|NRG1_uc003xja.2_Silent_p.K79K	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	268	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TTATGTCCAGGAAACAGCGGA	0.418													8	66					0	0	1	0	0
DUSP26	78986	broad.mit.edu	37	8	33451266	33451266	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:33451266C>T	uc003xjp.2	-	3	555	c.222_splice	c.e3-1	p.Q74_splice	DUSP26_uc003xjq.2_Splice_Site_p.Q74_splice	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26							Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		AGCCATGTCCCTGCATTGAGT	0.567													3	57					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35606211	35606211	+	Missense_Mutation	SNP	G	A	A	rs144314548		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:35606211G>A	uc003xjr.1	+	12	2261	c.1933G>A	c.(1933-1935)GAG>AAG	p.E645K	UNC5D_uc003xjs.1_Missense_Mutation_p.E640K|UNC5D_uc003xju.1_Missense_Mutation_p.E221K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	645	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GGGCAAATGGGAGGTGAGACC	0.438													8	68					0	0	1	0	0
ADAM9	8754	broad.mit.edu	37	8	38899578	38899578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:38899578C>T	uc003xmr.2	+	12	1322	c.1244C>T	c.(1243-1245)CCC>CTC	p.P415L	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	415	Extracellular (Potential).|Disintegrin.				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			TATAGTGCTCCCTCCTGTGGT	0.413													3	86					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39128403	39128403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:39128403C>T	uc003xmt.3	+	20	2416	c.2171C>T	c.(2170-2172)TCG>TTG	p.S724L	ADAM32_uc011lch.1_Missense_Mutation_p.S625L|ADAM32_uc003xmu.3_Intron|ADAM32_uc003xmv.2_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	724	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			AGATCTAAATCGGAAGGTAGC	0.289													3	24					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39496021	39496021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:39496021C>T	uc003xni.2	+	10	865	c.865C>T	c.(865-867)CCT>TCT	p.P289S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P265S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	289	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGCAACATTTCCTGGCACTGT	0.274													3	47					0	0	1	0	0
SFRP1	6422	broad.mit.edu	37	8	41166440	41166440	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:41166440T>C	uc003xnt.2	-	1	541	c.239A>G	c.(238-240)AAC>AGC	p.N80S		NM_003012	NP_003003	Q8N474	SFRP1_HUMAN	secreted frizzled-related protein 1 precursor	80	FZ.				brain development|canonical Wnt receptor signaling pathway|cellular response to BMP stimulus|cellular response to estradiol stimulus|cellular response to fibroblast growth factor stimulus|cellular response to heparin|cellular response to hypoxia|cellular response to interleukin-1|cellular response to prostaglandin E stimulus|cellular response to starvation|cellular response to transforming growth factor beta stimulus|cellular response to tumor necrosis factor|cellular response to vitamin D|DNA fragmentation involved in apoptotic nuclear change|dorsal/ventral axis specification|hemopoietic progenitor cell differentiation|hemopoietic stem cell differentiation|menstrual cycle phase|negative regulation of androgen receptor signaling pathway|negative regulation of B cell differentiation|negative regulation of bone remodeling|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cysteine-type endopeptidase activity|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast apoptosis|negative regulation of fibroblast proliferation|negative regulation of insulin secretion|negative regulation of ossification|negative regulation of osteoblast proliferation|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell growth|positive regulation of epithelial cell proliferation|positive regulation of fat cell differentiation|positive regulation of fibroblast apoptosis|positive regulation of focal adhesion assembly|positive regulation of non-canonical Wnt receptor signaling pathway|positive regulation of Rac GTPase activity|positive regulation of smoothened signaling pathway|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|regulation of angiogenesis|regulation of cell cycle process|response to drug|response to organic cyclic compound|vasculature development	cell surface|cytosol|extracellular space|plasma membrane|proteinaceous extracellular matrix	cysteine-type endopeptidase activity|drug binding|frizzled binding|heparin binding|identical protein binding|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1	Breast(1;9.19e-13)|Ovarian(28;0.00769)|Colorectal(14;0.0305)|Lung SC(25;0.211)	all_lung(54;0.0034)|Lung NSC(58;0.0134)|Hepatocellular(245;0.023)|Esophageal squamous(32;0.0559)	BRCA - Breast invasive adenocarcinoma(1;1.11e-10)|LUSC - Lung squamous cell carcinoma(45;0.00894)|COAD - Colon adenocarcinoma(11;0.0174)			CTCCAGCAGGTTGGGCAGCAC	0.647													3	26					0	0	1	0	0
POTEA	340441	broad.mit.edu	37	8	43173647	43173647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:43173647G>A	uc003xpz.1	+	9	1112	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	POTEA_uc003xqa.1_Missense_Mutation_p.E311K	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	357										ovary(1)	1						GGGATTATCAGAAAACCTGAC	0.378													8	101					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537550	55537550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:55537550C>T	uc003xsd.1	+	4	1256	c.1108C>T	c.(1108-1110)CCA>TCA	p.P370S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	370					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GATGAGTTTTCCAGGAAGAAC	0.398													4	35					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538048	55538048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:55538048G>A	uc003xsd.1	+	4	1754	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	536					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGAAAAAAGGAAAACAGTCT	0.338													5	42					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538365	55538365	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:55538365A>G	uc003xsd.1	+	4	2071	c.1923A>G	c.(1921-1923)AGA>AGG	p.R641R	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	641					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCACTGCAAGAATTGACAGAC	0.353													5	39					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540336	55540336	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:55540336C>T	uc003xsd.1	+	4	4042	c.3894C>T	c.(3892-3894)TTC>TTT	p.F1298F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1298					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGGCTTGTTTCCTAGGAGAGG	0.413													18	141					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56015427	56015427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:56015427G>A	uc003xsf.2	+	1	411	c.379G>A	c.(379-381)GGC>AGC	p.G127S		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	127	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CGCGGACGTGGGCACAGACGT	0.687													5	107					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61757561	61757561	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:61757561C>T	uc003xue.2	+	22	5466	c.4989C>T	c.(4987-4989)TTC>TTT	p.F1663F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1663					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TCAAAAGCTTCATCTGGGATC	0.478													20	182					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65517261	65517261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:65517261G>A	uc003xvj.2	-	5	1415	c.1211C>T	c.(1210-1212)CCT>CTT	p.P404L		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	404					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AAAGATTTCAGGGTCACCATG	0.473													5	98					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527679	65527679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:65527679C>T	uc003xvj.2	-	4	1165	c.961G>A	c.(961-963)GAA>AAA	p.E321K		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	321					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				CGGTCAATTTCGTCACGCACT	0.488													6	55					0	0	1	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66988929	66988929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:66988929C>T	uc003xvs.1	+	4	445	c.154C>T	c.(154-156)CCA>TCA	p.P52S	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	52	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			AGACAAGAATCCAGATGATCC	0.383													7	98					0	0	1	0	0
CSPP1	79848	broad.mit.edu	37	8	68007774	68007774	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:68007774C>T	uc003xxi.2	+	8	893	c.862C>T	c.(862-864)CTA>TTA	p.L288L	CSPP1_uc003xxg.1_Silent_p.L280L|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Silent_p.L253L|CSPP1_uc003xxk.2_5'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	288						centrosome|microtubule|spindle		p.D288Y(1)		ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			CATTTCCAACCTAAAACATCA	0.373													6	54					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68995601	68995601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:68995601C>T	uc003xxv.1	+	18	2032	c.2005C>T	c.(2005-2007)CTT>TTT	p.L669F	PREX2_uc003xxu.1_Missense_Mutation_p.L669F|PREX2_uc011lez.1_Missense_Mutation_p.L604F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	669	PDZ 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCTAAGAGTTCTTGTGAGCAC	0.318													6	50					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69400280	69400280	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:69400280C>T	uc010lyz.2	+	5	550	c.501C>T	c.(499-501)CTC>CTT	p.L167L	C8orf34_uc010lyy.1_Silent_p.L167L|C8orf34_uc003xyb.2_Silent_p.L142L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	167					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CAGATGAACTCGATAAGGTAA	0.274													4	30					0	0	1	0	0
LACTB2	51110	broad.mit.edu	37	8	71574071	71574071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:71574071C>T	uc011lfd.1	-	2	276	c.184G>A	c.(184-186)GCT>ACT	p.A62T	LACTB2_uc003xyp.2_Missense_Mutation_p.A62T	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	62							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			TCAGTTAGAGCCTGCTTTAAA	0.388													10	90					0	0	1	0	0
XKR9	389668	broad.mit.edu	37	8	71619375	71619375	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:71619375G>A	uc003xyq.2	+	4	1014	c.480G>A	c.(478-480)GCG>GCA	p.A160A	XKR9_uc010lze.2_Silent_p.A160A|XKR9_uc010lzd.2_Silent_p.A28A	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	160						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			ATGGACAAGCGAATTTCAGTC	0.398													11	81					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72267137	72267137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:72267137C>T	uc003xys.3	-	2	291	c.4G>A	c.(4-6)GAA>AAA	p.E2K	EYA1_uc003xyr.3_Missense_Mutation_p.E2K|EYA1_uc003xyt.3_Intron|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.E2K|EYA1_uc011lfe.1_Missense_Mutation_p.E2K|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	2					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			TCCTGCATTTCCATAGACCTA	0.428													11	159					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480400	73480400	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:73480400A>T	uc003xzb.2	+	2	1019	c.431A>T	c.(430-432)AAA>ATA	p.K144I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	144	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TATCATCAAAAAAAAGAACAA	0.448													5	81					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616858	77616858	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77616858C>T	uc003yav.2	+	2	922	c.535C>T	c.(535-537)CAG>TAG	p.Q179*	ZFHX4_uc003yat.1_Nonsense_Mutation_p.Q179*|ZFHX4_uc003yau.1_Nonsense_Mutation_p.Q179*|ZFHX4_uc003yaw.1_Nonsense_Mutation_p.Q179*	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	179						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAGAGTGATCAGTCTGCTTC	0.488										HNSCC(33;0.089)			3	27					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617180	77617180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77617180C>T	uc003yav.2	+	2	1244	c.857C>T	c.(856-858)TCT>TTT	p.S286F	ZFHX4_uc003yat.1_Missense_Mutation_p.S286F|ZFHX4_uc003yau.1_Missense_Mutation_p.S286F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S286F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	286						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGCAAGTTGTCTTTTGGTTAT	0.428										HNSCC(33;0.089)			7	57					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763659	77763659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77763659C>T	uc003yav.2	+	10	4754	c.4367C>T	c.(4366-4368)CCT>CTT	p.P1456L	ZFHX4_uc003yau.1_Missense_Mutation_p.P1501L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1456L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1456						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAAGCAAGTCCTGTAGGAAGT	0.478										HNSCC(33;0.089)			3	37					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767571	77767571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77767571C>T	uc003yav.2	+	10	8666	c.8279C>T	c.(8278-8280)TCG>TTG	p.S2760L	ZFHX4_uc003yau.1_Missense_Mutation_p.S2805L|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2760L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2760						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAGACTTCATCGATTAATACG	0.453										HNSCC(33;0.089)			5	30					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768044	77768044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77768044G>A	uc003yav.2	+	10	9139	c.8752G>A	c.(8752-8754)GGG>AGG	p.G2918R	ZFHX4_uc003yau.1_Missense_Mutation_p.G2963R|ZFHX4_uc003yaw.1_Missense_Mutation_p.G2918R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2918	Homeobox 4.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGAAATGTTAGGGAATGAGAT	0.423										HNSCC(33;0.089)			6	32					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77775789	77775789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:77775789G>A	uc003yav.2	+	11	10091	c.9704G>A	c.(9703-9705)GGA>GAA	p.G3235E		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3231						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A3235G(1)		ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGCTCCCTGGAACAGTGCAG	0.527										HNSCC(33;0.089)			7	73					0	0	1	0	0
ZNF704	619279	broad.mit.edu	37	8	81577238	81577238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:81577238C>T	uc003yby.1	-	6	971	c.739G>A	c.(739-741)GCA>ACA	p.A247T		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	247						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			AGCCCGTCTGCCACTGAGTCT	0.522													6	72					0	0	1	0	0
CHMP4C	92421	broad.mit.edu	37	8	82665378	82665378	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:82665378G>A	uc003ycl.2	+	2	444	c.270G>A	c.(268-270)GAG>GAA	p.E90E		NM_152284	NP_689497	Q96CF2	CHM4C_HUMAN	chromatin modifying protein 4C	90	Intramolecular interaction with C- terminus (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(2)	2						CTACCATTGAGTTCCAGAGAG	0.443													3	56					0	0	1	0	0
RALYL	138046	broad.mit.edu	37	8	85774624	85774624	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:85774624G>A	uc003ycq.3	+	7	923	c.507G>A	c.(505-507)GGG>GGA	p.G169G	RALYL_uc003ycr.3_Silent_p.G169G|RALYL_uc003ycs.3_Silent_p.G169G|RALYL_uc010lzy.2_Silent_p.G158G|RALYL_uc003yct.3_Silent_p.G182G|RALYL_uc003ycu.3_Silent_p.G96G|RALYL_uc003ycv.3_Silent_p.G81G	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	169							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CTCGCAGGGGGAAAGGAGTCT	0.473													3	35					0	0	1	0	0
LRRCC1	85444	broad.mit.edu	37	8	86041443	86041443	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:86041443C>T	uc003ycw.2	+	10	1609	c.1455C>T	c.(1453-1455)TCC>TCT	p.S485S	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Silent_p.S186S|LRRCC1_uc003ycx.2_Silent_p.S392S|LRRCC1_uc003ycy.2_Silent_p.S465S	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	485	Potential.				cell division|mitosis	centriole|nucleus					0						AGAGAAATTCCAAAGGACAAC	0.294													9	155					0	0	1	0	0
LRRCC1	85444	broad.mit.edu	37	8	86042224	86042224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:86042224C>T	uc003ycw.2	+	11	1851	c.1697C>T	c.(1696-1698)TCC>TTC	p.S566F	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.S267F|LRRCC1_uc003ycx.2_Missense_Mutation_p.S473F|LRRCC1_uc003ycy.2_Missense_Mutation_p.S546F	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	566	Potential.				cell division|mitosis	centriole|nucleus					0						CTTAGAACTTCCCTTCATCGA	0.368													12	88					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242492	87242492	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:87242492C>T	uc003ydq.1	-	1	113	c.15G>A	c.(13-15)GAG>GAA	p.E5E	SLC7A13_uc003ydr.1_Silent_p.E5E	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	5	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						GCTGTATTTTCTCCCCTCTAT	0.358													5	58					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87641241	87641241	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:87641241G>A	uc003ydx.2	-	12	1432	c.1386C>T	c.(1384-1386)ACC>ACT	p.T462T	CNGB3_uc010maj.2_Silent_p.T324T	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	462	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TGTAGGCAATGGTGTCATCCA	0.453													17	185					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885825	88885825	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:88885825C>T	uc003ydz.2	-	1	472	c.375G>A	c.(373-375)CGG>CGA	p.R125R		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	125										ovary(1)	1						AATTCACCTTCCGATTAGGGA	0.562													12	101					0	0	1	0	0
CALB1	793	broad.mit.edu	37	8	91094893	91094893	+	Silent	SNP	G	A	A	rs11556994		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:91094893G>A	uc003yel.1	-	1	215	c.33C>T	c.(31-33)ATC>ATT	p.I11I	CALB1_uc003yem.1_Intron|CALB1_uc011lge.1_5'Flank	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	11	EF-hand 1.					nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			GTGAGGCTGTGATGAGGGATG	0.527													24	200					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95172199	95172199	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:95172199C>T	uc003ygh.2	-	12	1676	c.1551G>A	c.(1549-1551)AAG>AAA	p.K517K	CDH17_uc011lgo.1_Silent_p.K303K|CDH17_uc011lgp.1_Silent_p.K517K	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	517	Extracellular (Potential).|Cadherin 5.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			GGCTATTTACCTTTTTAATTA	0.383													4	58					0	0	1	0	0
C8orf47	203111	broad.mit.edu	37	8	99102183	99102183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:99102183G>A	uc003yih.1	+	2	1086	c.938G>A	c.(937-939)CGA>CAA	p.R313Q		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	313	Glu-rich.										0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			CATCCAGCACGAAATGTAGAG	0.438													4	118					0	0	1	0	0
KCNS2	3788	broad.mit.edu	37	8	99441223	99441223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:99441223G>A	uc003yin.2	+	2	1366	c.1016G>A	c.(1015-1017)GGG>GAG	p.G339E		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	339	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CTCTCCGTGGGGATTTCCATC	0.577													8	64					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100831779	100831779	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:100831779A>T	uc003yiv.2	+	48	8947	c.8836A>T	c.(8836-8838)ATA>TTA	p.I2946L	VPS13B_uc003yiw.2_Missense_Mutation_p.I2921L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2946					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GCTTCAACCCATATGGCCCTA	0.368													3	24					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101016271	101016271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:101016271C>T	uc003yjb.1	-	17	2705	c.2510G>A	c.(2509-2511)CGA>CAA	p.R837Q	RGS22_uc003yja.1_Missense_Mutation_p.R656Q|RGS22_uc003yjc.1_Missense_Mutation_p.R825Q|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	837					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ATATTCTGTTCGTTTAGAGAC	0.353													5	69					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101052308	101052308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:101052308G>A	uc003yjb.1	-	13	2141	c.1946C>T	c.(1945-1947)ACC>ATC	p.T649I	RGS22_uc003yja.1_Missense_Mutation_p.T468I|RGS22_uc003yjc.1_Missense_Mutation_p.T637I|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	649					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ATCTGACACGGTTTTAACCTA	0.348													4	31					0	0	1	0	0
SPAG1	6674	broad.mit.edu	37	8	101190158	101190158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:101190158C>T	uc003yjh.1	+	4	501	c.415C>T	c.(415-417)CAT>TAT	p.H139Y	SPAG1_uc003yjg.1_Missense_Mutation_p.H139Y|SPAG1_uc003yji.1_Missense_Mutation_p.H139Y	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	139					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		CAGCTGTCTTCATGTAGGCAA	0.318													9	81					0	0	1	0	0
ANKRD46	157567	broad.mit.edu	37	8	101540168	101540168	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:101540168G>A	uc003yjm.2	-	4	579	c.375C>T	c.(373-375)ATC>ATT	p.I125I	ANKRD46_uc003yjn.1_Silent_p.I125I|ANKRD46_uc003yjo.1_Silent_p.I125I|ANKRD46_uc003yjp.1_Silent_p.I125I	NM_198401	NP_940683	Q86W74	ANR46_HUMAN	ankyrin repeat domain 46	125	ANK 4.					integral to membrane					0	all_cancers(14;5.07e-05)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000353)|all_lung(17;0.000998)		Epithelial(11;2.61e-11)|all cancers(13;5.03e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.49e-06)|STAD - Stomach adenocarcinoma(118;0.0957)			CCAGCAATCGGATGACATCTT	0.378													12	107					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102555576	102555577	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:102555576_102555577CC>TT	uc010mbu.2	+	2	458_459	c.128_129CC>TT	c.(127-129)CCC>CTT	p.P43L	GRHL2_uc010mbt.1_Missense_Mutation_p.P43L|GRHL2_uc011lhi.1_Missense_Mutation_p.P43L	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	43	Transcription activation.					cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TTGGAGAATCCCCTGACAGCAG	0.545													8	96					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103308007	103308007	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:103308007G>A	uc003ykr.1	-	29	3702	c.3669C>T	c.(3667-3669)CTC>CTT	p.L1223L	UBR5_uc003yks.1_Silent_p.L1223L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1223	UBR-type.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			ATGTCCGTTTGAGTCTATAGA	0.338													4	31					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104922370	104922370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:104922370G>A	uc003yls.2	+	3	1208	c.967G>A	c.(967-969)GAT>AAT	p.D323N	RIMS2_uc003ylp.2_Missense_Mutation_p.D545N|RIMS2_uc003ylw.2_Missense_Mutation_p.D353N|RIMS2_uc003ylq.2_Missense_Mutation_p.D353N|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	612					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGGAGACATGGATTACAACTG	0.408										HNSCC(12;0.0054)			17	145					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105257282	105257282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:105257282G>A	uc003yls.2	+	24	3768	c.3527G>A	c.(3526-3528)GGA>GAA	p.G1176E	RIMS2_uc003ylp.2_Missense_Mutation_p.G1158E|RIMS2_uc003ylw.2_Missense_Mutation_p.G1165E|RIMS2_uc003ylq.2_Missense_Mutation_p.G972E|RIMS2_uc003ylr.2_Missense_Mutation_p.G997E	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1220					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGCTCAGAAGGAAAGTGAGTG	0.498										HNSCC(12;0.0054)			5	83					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105361650	105361650	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:105361650G>A	uc003ylx.1	+	2	919	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	290					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTAAAGAAAGGAAAAACCTGG	0.493													6	80					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105368387	105368387	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:105368387G>A	uc003ylx.1	+	4	1423	c.1374G>A	c.(1372-1374)AGG>AGA	p.R458R		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	458	Cytoplasmic.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AAATGATTAGGAAGAAGCAAA	0.448													3	47					0	0	1	0	0
DPYS	1807	broad.mit.edu	37	8	105405031	105405031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:105405031C>T	uc003yly.3	-	8	1553	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q	DPYS_uc010mcf.1_Missense_Mutation_p.R45Q	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	475					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTGCTTTATTCGTTTGTAAAT	0.473													28	218					0	0	1	0	0
ABRA	137735	broad.mit.edu	37	8	107782054	107782054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:107782054C>T	uc003ymm.3	-	1	419	c.365G>A	c.(364-366)GGG>GAG	p.G122E		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	122					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GCTCACGTCCCCTCCTCTCTC	0.532													17	132					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110416853	110416853	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:110416853C>T	uc003yne.2	+	15	1548	c.1444C>T	c.(1444-1446)CGA>TGA	p.R482*		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	482	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTACCAGTATCGAAATGTTTA	0.363										HNSCC(38;0.096)			3	35					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110437383	110437383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:110437383C>T	uc003yne.2	+	24	2871	c.2767C>T	c.(2767-2769)CAT>TAT	p.H923Y		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	923	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTCAAAAATTCATATTCAAAG	0.318										HNSCC(38;0.096)			3	29					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509215	110509215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:110509215G>A	uc003yne.2	+	64	10499	c.10395G>A	c.(10393-10395)ATG>ATA	p.M3465I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3465	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGATCTATATGAACCAAGATG	0.378										HNSCC(38;0.096)			7	77					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110520420	110520420	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:110520420G>A	uc003yne.2	+	70	11426	c.11322G>A	c.(11320-11322)CTG>CTA	p.L3774L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3774	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGAAAGTCTGGATCCTGACA	0.393										HNSCC(38;0.096)			14	118					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113237016	113237016	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:113237016A>T	uc003ynu.2	-	71	11267	c.11108T>A	c.(11107-11109)GTT>GAT	p.V3703D	CSMD3_uc003yns.2_Missense_Mutation_p.V2905D|CSMD3_uc003ynt.2_Missense_Mutation_p.V3663D|CSMD3_uc011lhx.1_Missense_Mutation_p.V3534D	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3703	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATTGTGCAAACCGTGTTCAA	0.423										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	171					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113308069	113308069	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:113308069G>A	uc003ynu.2	-	54	8766	c.8607C>T	c.(8605-8607)TCC>TCT	p.S2869S	CSMD3_uc003yns.2_Silent_p.S2071S|CSMD3_uc003ynt.2_Silent_p.S2829S|CSMD3_uc011lhx.1_Silent_p.S2700S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2869	Extracellular (Potential).|Sushi 18.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TACGCACACAGGATGGGAGCT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			4	59					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113316994	113316994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:113316994G>A	uc003ynu.2	-	52	8381	c.8222C>T	c.(8221-8223)CCT>CTT	p.P2741L	CSMD3_uc003yns.2_Missense_Mutation_p.P1943L|CSMD3_uc003ynt.2_Missense_Mutation_p.P2701L|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2741	Extracellular (Potential).|Sushi 16.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGTACCATTAGGAAGACATTC	0.388										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	81					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113662503	113662503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:113662503G>A	uc003ynu.2	-	19	3239	c.3080C>T	c.(3079-3081)TCC>TTC	p.S1027F	CSMD3_uc003yns.2_Missense_Mutation_p.S299F|CSMD3_uc003ynt.2_Missense_Mutation_p.S987F|CSMD3_uc011lhx.1_Missense_Mutation_p.S923F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1027	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGAGCCAATGGAGAAATCATG	0.433										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			15	160					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113988098	113988098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:113988098C>T	uc003ynu.2	-	7	1469	c.1310G>A	c.(1309-1311)AGA>AAA	p.R437K	CSMD3_uc003ynt.2_Missense_Mutation_p.R397K|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	437	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTCTTTAGTTCTTTCTATCTG	0.423										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	96					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114186002	114186002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:114186002C>T	uc003ynu.2	-	4	817	c.658G>A	c.(658-660)GCC>ACC	p.A220T	CSMD3_uc003ynt.2_Missense_Mutation_p.A180T|CSMD3_uc011lhx.1_Missense_Mutation_p.A220T|CSMD3_uc010mcx.1_Missense_Mutation_p.A220T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	220	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACTGAATTGGCTATGCAGGTG	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			4	94					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114326879	114326879	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:114326879G>A	uc003ynu.2	-	2	481	c.322C>T	c.(322-324)CAG>TAG	p.Q108*	CSMD3_uc003ynt.2_Nonsense_Mutation_p.Q68*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.Q108*|CSMD3_uc010mcx.1_Nonsense_Mutation_p.Q108*|CSMD3_uc003ynx.3_Nonsense_Mutation_p.Q108*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	108	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCAAATGACTGAAAAACAATT	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	71					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114327001	114327001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:114327001C>T	uc003ynu.2	-	2	359	c.200G>A	c.(199-201)GGA>GAA	p.G67E	CSMD3_uc003ynt.2_Missense_Mutation_p.G27E|CSMD3_uc011lhx.1_Missense_Mutation_p.G67E|CSMD3_uc010mcx.1_Missense_Mutation_p.G67E|CSMD3_uc003ynx.3_Missense_Mutation_p.G67E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	67	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTTAAAGTTCCACCACATGT	0.318										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	114					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118183310	118183310	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:118183310G>A	uc003yoh.2	+	7	1097	c.867G>A	c.(865-867)GAG>GAA	p.E289E	SLC30A8_uc010mcz.2_Silent_p.E240E|SLC30A8_uc011lia.1_Silent_p.E240E|SLC30A8_uc003yog.2_Silent_p.E240E	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	289	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GTGTGAAAGAGCTTATTTTAG	0.448													6	102					0	0	1	0	0
MAL2	114569	broad.mit.edu	37	8	120233967	120233967	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:120233967G>A	uc003yop.2	+	3	375	c.273G>A	c.(271-273)GTG>GTA	p.V91V		NM_052886	NP_443118	Q969L2	MAL2_HUMAN	MAL2 proteolipid protein	91	Cytoplasmic (Potential).|MARVEL.					apical plasma membrane|endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding				0	all_cancers(13;1.91e-26)|Lung NSC(37;8.61e-08)|Ovarian(258;0.018)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000967)			CTGGCATGGTGGCTCAAATTG	0.428													5	67					0	0	1	0	0
NOV	4856	broad.mit.edu	37	8	120430338	120430338	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:120430338C>T	uc003yoq.2	+	3	572	c.351C>T	c.(349-351)TAC>TAT	p.Y117Y		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	117	VWFC.				regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGGTCATCTACCGCAGTGGAG	0.493													7	75					0	0	1	0	0
DSCC1	79075	broad.mit.edu	37	8	120865425	120865425	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:120865425T>C	uc003yov.2	-	2	348	c.213A>G	c.(211-213)CAA>CAG	p.Q71Q		NM_024094	NP_076999	Q9BVC3	DCC1_HUMAN	defective in sister chromatid cohesion 1	71					DNA replication|maintenance of mitotic sister chromatid cohesion|post-translational protein acetylation|regulation of DNA replication	chromatin|chromosome, centromeric region|nucleoplasm	DNA binding|protein binding			pancreas(1)	1	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			ACAGCACAGCTTGCTCGTCTT	0.388													6	93					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121290694	121290694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:121290694C>T	uc003yox.2	+	28	3623	c.3358C>T	c.(3358-3360)CGA>TGA	p.R1120*	COL14A1_uc003yoz.2_Nonsense_Mutation_p.R85*	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1120	VWFA 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TAAGTATGTTCGAGATACCTT	0.398													4	44					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123963870	123963870	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:123963870T>C	uc003ypk.1	+	3	687	c.120T>C	c.(118-120)CCT>CCC	p.P40P		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	40						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CACCACAGCCTGACGTGGCCA	0.483													4	38					0	0	1	0	0
WDR67	93594	broad.mit.edu	37	8	124105836	124105836	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124105836C>T	uc003ypp.1	+	5	615	c.525C>T	c.(523-525)TTC>TTT	p.F175F	WDR67_uc011lig.1_Silent_p.F175F|WDR67_uc011lih.1_Silent_p.F65F|WDR67_uc003ypq.1_RNA|WDR67_uc003ypo.1_Silent_p.F175F|WDR67_uc003ypr.2_RNA	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	175	WD 3.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CTTAGGTTTTCTTTCTACCAT	0.299													9	62					0	0	1	0	0
WDR67	93594	broad.mit.edu	37	8	124113183	124113183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124113183C>T	uc003ypp.1	+	7	1058	c.968C>T	c.(967-969)TCT>TTT	p.S323F	WDR67_uc011lig.1_Missense_Mutation_p.S323F|WDR67_uc011lih.1_Missense_Mutation_p.S213F|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.S36F|WDR67_uc003ypo.1_Missense_Mutation_p.S323F|WDR67_uc003ypr.2_RNA	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	323	WD 5.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TACATTGCATCTATTATGGAA	0.343													3	53					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124358978	124358978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124358978G>A	uc003yqh.3	-	17	2333	c.2225C>T	c.(2224-2226)CCT>CTT	p.P742L	ATAD2_uc011lii.1_Missense_Mutation_p.P533L|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.P742L	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	742					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TTCTAGCAGAGGACAAGAAAT	0.323													15	147					0	0	1	0	0
FBXO32	114907	broad.mit.edu	37	8	124553243	124553243	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124553243G>A	uc003yqr.2	-	1	204	c.12C>T	c.(10-12)CTC>CTT	p.L4L	FBXO32_uc010mdk.2_Silent_p.L4L	NM_058229	NP_478136	Q969P5	FBX32_HUMAN	F-box only protein 32 isoform 1	4										skin(3)|breast(2)|lung(1)	6	Lung NSC(37;1.13e-13)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			AGTCCTGCCCGAGGAATGGCA	0.697													7	45					0	0	1	0	0
FBXO32	114907	broad.mit.edu	37	8	124553245	124553245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124553245G>A	uc003yqr.2	-	1	202	c.10C>T	c.(10-12)CTC>TTC	p.L4F	FBXO32_uc010mdk.2_Missense_Mutation_p.L4F	NM_058229	NP_478136	Q969P5	FBX32_HUMAN	F-box only protein 32 isoform 1	4										skin(3)|breast(2)|lung(1)	6	Lung NSC(37;1.13e-13)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TCCTGCCCGAGGAATGGCATG	0.692													7	43					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124978440	124978440	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124978440G>A	uc003yqw.2	+	5	500	c.294G>A	c.(292-294)GAG>GAA	p.E98E		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	98	C2 1.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TGGTGGGTGAGAACATTGACC	0.498													4	27					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124989728	124989728	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124989728C>T	uc003yqw.2	+	10	1148	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	314	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGGAAATGTTCCCTCCCTTGT	0.502													11	117					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124992898	124992898	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:124992898G>A	uc003yqw.2	+	11	1463	c.1257G>A	c.(1255-1257)CTG>CTA	p.L419L		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	419	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCAAGGCCCTGAAGGAGCTCA	0.463											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	61					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125076686	125076686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:125076686C>T	uc003yqw.2	+	26	3633	c.3427C>T	c.(3427-3429)CCC>TCC	p.P1143S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1143	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TGAGCCACCTCCCACAGTGGT	0.587													16	137					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125110043	125110043	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:125110043C>G	uc003yqw.2	+	37	5008	c.4802C>G	c.(4801-4803)ACC>AGC	p.T1601S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1601	C2 6.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTGAGAGTGACCATCTGGAAC	0.413													3	87					0	0	1	0	0
MTSS1	9788	broad.mit.edu	37	8	125565887	125565887	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:125565887A>T	uc003yrk.2	-	14	2148	c.1614T>A	c.(1612-1614)GAT>GAA	p.D538E	NDUFB9_uc011lim.1_Intron|MTSS1_uc003yrh.2_Missense_Mutation_p.D187E|MTSS1_uc011lin.1_Missense_Mutation_p.D312E|MTSS1_uc011lio.1_Missense_Mutation_p.D428E|MTSS1_uc003yri.2_Missense_Mutation_p.D256E|MTSS1_uc003yrj.2_Missense_Mutation_p.D513E|MTSS1_uc003yrl.2_Missense_Mutation_p.D542E	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	538					actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			ACTCCTGCTGATCTGCCTCCT	0.458													5	83					0	0	1	0	0
ASAP1	50807	broad.mit.edu	37	8	131104275	131104275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:131104275G>A	uc003yta.1	-	24	2544	c.2516C>T	c.(2515-2517)TCC>TTC	p.S839F	ASAP1_uc003ysz.1_Missense_Mutation_p.S650F|ASAP1_uc011liw.1_Missense_Mutation_p.S832F	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	839	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GGGAGGGTCGGATAGGGTTCT	0.592													10	134					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131916227	131916227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:131916227C>T	uc003ytd.3	-	7	1958	c.1702G>A	c.(1702-1704)GGC>AGC	p.G568S	ADCY8_uc010mds.2_Missense_Mutation_p.G568S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	568	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTACCATGGCCCTCTTCCACG	0.453										HNSCC(32;0.087)			10	152					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133152358	133152358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:133152358C>T	uc003ytj.2	-	11	1758	c.1533G>A	c.(1531-1533)ATG>ATA	p.M511I	KCNQ3_uc010mdt.2_Missense_Mutation_p.M511I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	511					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGGTGGGGATCATGTCTTCGA	0.632													4	80					0	0	1	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134474154	134474154	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:134474154G>A	uc003yuk.2	-	9	1642	c.813C>T	c.(811-813)ATC>ATT	p.I271I	ST3GAL1_uc003yum.2_Silent_p.I271I	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	271	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			TGACCGAGAGGATGCCGGTAG	0.572													18	215					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135614509	135614509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:135614509G>A	uc003yup.2	-	6	1628	c.1453C>T	c.(1453-1455)CAG>TAG	p.Q485*	ZFAT_uc003yun.2_Nonsense_Mutation_p.Q473*|ZFAT_uc003yuo.2_Nonsense_Mutation_p.Q473*|ZFAT_uc010meh.2_Nonsense_Mutation_p.Q473*|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Nonsense_Mutation_p.Q473*|ZFAT_uc010mej.2_Nonsense_Mutation_p.Q423*|ZFAT_uc003yur.2_Nonsense_Mutation_p.Q473*	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AAGGCCTCCTGGGCAGCCCCG	0.602													6	44					0	0	1	0	0
KHDRBS3	10656	broad.mit.edu	37	8	136554981	136554981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:136554981C>T	uc003yuv.2	+	3	686	c.292C>T	c.(292-294)CTT>TTT	p.L98F	KHDRBS3_uc003yuw.2_Missense_Mutation_p.L98F	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	98	KH.				regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			AATGTCCATCCTTGGGAAAGG	0.368													4	63					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142178392	142178392	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:142178392A>C	uc003yvy.2	+	13	2081	c.1803A>C	c.(1801-1803)GAA>GAC	p.E601D	DENND3_uc010mep.2_Missense_Mutation_p.E562D|DENND3_uc003yvz.1_Missense_Mutation_p.E285D	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	601										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GGACGGTGGAATCCATGTCTG	0.572													13	124					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142228518	142228518	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:142228518G>A	uc003ywd.1	-	4	1376	c.1068C>T	c.(1066-1068)GCC>GCT	p.A356A	SLC45A4_uc003ywc.1_Silent_p.A356A|SLC45A4_uc010meq.1_Silent_p.A354A	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	407					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			AGCTCGACGTGGCCGAGGGCT	0.627													4	53					0	0	1	0	0
EEF1D	1936	broad.mit.edu	37	8	144662886	144662886	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:144662886G>A	uc011lki.1	-	6	671	c.402C>T	c.(400-402)CCC>CCT	p.P134P	NAPRT1_uc003yym.3_5'Flank|NAPRT1_uc003yyn.3_5'Flank|NAPRT1_uc011lkh.1_5'Flank|NAPRT1_uc003yyo.3_5'Flank|EEF1D_uc003yyp.1_Silent_p.P476P|EEF1D_uc003yyq.1_Silent_p.P550P|EEF1D_uc011lkj.1_Silent_p.P499P|EEF1D_uc003yyr.2_Silent_p.P500P|EEF1D_uc003yyt.2_Silent_p.P500P|EEF1D_uc011lkk.1_Silent_p.P134P|EEF1D_uc003yys.2_Silent_p.P134P|EEF1D_uc003yyv.2_Silent_p.P110P|EEF1D_uc003yyu.2_Silent_p.P134P|EEF1D_uc011lkl.1_Silent_p.P115P	NM_001130057	NP_001123529	P29692	EF1D_HUMAN	eukaryotic translation elongation factor 1 delta	134					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|signal transducer activity|translation elongation factor activity			ovary(1)|kidney(1)|skin(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			CTTGGCGCATGGGAGATACGT	0.637													13	145					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144874996	144874996	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:144874996G>A	uc003yzp.1	-	30	4066	c.4059C>T	c.(4057-4059)TCC>TCT	p.S1353S	SCRIB_uc003yzn.1_Silent_p.S62S|SCRIB_uc003yzo.1_Silent_p.S1353S	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1353					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GCTCCCGGAAGGACAGCTGCT	0.706													6	34					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940786	144940786	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:144940786C>T	uc003zaa.1	-	1	6649	c.6636G>A	c.(6634-6636)GAG>GAA	p.E2212E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2212						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGCGGTCGTCCTCCATGAGCT	0.622													10	114					0	0	1	0	0
FBXL6	26233	broad.mit.edu	37	8	145579670	145579670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:145579670G>A	uc003zcb.2	-	8	1455	c.1430C>T	c.(1429-1431)TCT>TTT	p.S477F	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'Flank|FBXL6_uc003zbz.2_Missense_Mutation_p.S204F|FBXL6_uc003zca.2_Missense_Mutation_p.S471F|FBXL6_uc010mfx.2_Missense_Mutation_p.S238F|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform	477	LRR 10.				proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GAGGTTAAGAGAGCACAGGGC	0.627													4	99					0	0	1	0	0
CPSF1	29894	broad.mit.edu	37	8	145619965	145619965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:145619965G>A	uc003zcj.2	-	31	3536	c.3461C>T	c.(3460-3462)CCC>CTC	p.P1154L	MIR939_hsa-mir-939|MI0005761_5'Flank	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1154					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CTTGGTCAAGGGCTGGCCAGG	0.502													5	58					0	0	1	0	0
ZNF251	90987	broad.mit.edu	37	8	145947980	145947980	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:145947980C>T	uc003zdv.3	-	5	1321	c.1065G>A	c.(1063-1065)GGG>GGA	p.G355G		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	355	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TGAAGGCCTTCCCACAGTGAC	0.493													6	44					0	0	1	0	0
ZNF251	90987	broad.mit.edu	37	8	145948186	145948186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:145948186G>A	uc003zdv.3	-	5	1115	c.859C>T	c.(859-861)CAC>TAC	p.H287Y		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	287	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TCTCCAGTGTGAATTCTCCGA	0.433													8	80					0	0	1	0	0
ZNF250	58500	broad.mit.edu	37	8	146108125	146108125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:146108125C>T	uc003zeq.3	-	6	575	c.458G>A	c.(457-459)AGG>AAG	p.R153K	COMMD5_uc010mgf.2_Intron|ZNF250_uc003zer.3_Missense_Mutation_p.R148K|ZNF250_uc010mgg.2_Missense_Mutation_p.R148K	NM_021061	NP_066405	P15622	ZN250_HUMAN	zinc finger protein 250 isoform a	153					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;2.53e-38)|OV - Ovarian serous cystadenocarcinoma(54;4.07e-38)|all cancers(56;2.27e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.0654)		TTGATCAATCCTCCCCAAGGG	0.433													15	179					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990276	990276	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:990276C>T	uc003zgw.1	+	2	728	c.690C>T	c.(688-690)CTC>CTT	p.L230L		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	230					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		AGAATCACCTCCTGATTGAGG	0.567													9	87					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990452	990452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:990452G>A	uc003zgw.1	+	2	904	c.866G>A	c.(865-867)CGA>CAA	p.R289Q		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	289					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		CTGTCCAGCCGATCCTCAGTC	0.572													11	72					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8507350	8507350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:8507350G>A	uc003zkk.2	-	21	2339	c.1628C>T	c.(1627-1629)ACC>ATC	p.T543I	PTPRD_uc003zkp.2_Missense_Mutation_p.T543I|PTPRD_uc003zkq.2_Missense_Mutation_p.T543I|PTPRD_uc003zkr.2_Missense_Mutation_p.T537I|PTPRD_uc003zks.2_Missense_Mutation_p.T533I|PTPRD_uc003zkl.2_Missense_Mutation_p.T543I|PTPRD_uc003zkm.2_Missense_Mutation_p.T530I|PTPRD_uc003zkn.2_Missense_Mutation_p.T543I|PTPRD_uc003zko.2_Missense_Mutation_p.T540I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	543	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTTGGCAATGGTATCTGAACG	0.468										TSP Lung(15;0.13)			7	147					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13168489	13168489	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:13168489G>A	uc010mia.1	-	21	3187	c.3130C>T	c.(3130-3132)CGA>TGA	p.R1044*	MPDZ_uc003zkz.3_5'UTR|MPDZ_uc010mhy.2_Nonsense_Mutation_p.R1044*|MPDZ_uc010mhz.2_Nonsense_Mutation_p.R1044*|MPDZ_uc011lmn.1_Nonsense_Mutation_p.R1044*|MPDZ_uc003zlb.3_Nonsense_Mutation_p.R1044*	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1044	PDZ 6.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CGGCCATCTCGACTAATGGCA	0.443													13	144					0	0	1	0	0
CER1	9350	broad.mit.edu	37	9	14722444	14722444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:14722444C>T	uc003zlj.2	-	1	272	c.227G>A	c.(226-228)AGA>AAA	p.R76K		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	76					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		CATCTTCTCTCTCTGCCTCTG	0.567													9	93					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14823314	14823314	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:14823314G>A	uc003zlm.2	-	13	2771	c.2181C>T	c.(2179-2181)AAC>AAT	p.N727N	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	727	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTTCATATAGTTCACAGCAT	0.443													26	190					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15175054	15175054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:15175054C>T	uc003zlr.1	-	19	1844	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K	TTC39B_uc003zlq.1_Missense_Mutation_p.E544K|TTC39B_uc011lmp.1_Missense_Mutation_p.E476K|TTC39B_uc010mie.1_Missense_Mutation_p.E573K|TTC39B_uc011lmq.1_Missense_Mutation_p.E562K|TTC39B_uc011lmr.1_Missense_Mutation_p.E506K|TTC39B_uc003zlp.1_Missense_Mutation_p.E158K	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	575	TPR 3.						binding			ovary(1)	1						TTGTCAATTTCCCCCTGGCTT	0.408													5	84					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15190649	15190649	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:15190649G>A	uc003zlr.1	-	11	931	c.810C>T	c.(808-810)CTC>CTT	p.L270L	TTC39B_uc003zlq.1_Silent_p.L239L|TTC39B_uc011lmp.1_Silent_p.L171L|TTC39B_uc010mie.1_Silent_p.L268L|TTC39B_uc011lmq.1_Silent_p.L270L|TTC39B_uc011lmr.1_Silent_p.L201L|TTC39B_uc010mif.1_Silent_p.L270L|TTC39B_uc003zls.1_Silent_p.L171L|TTC39B_uc010mig.1_Silent_p.L239L|TTC39B_uc011lms.1_RNA|TTC39B_uc003zlp.1_5'Flank	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	270							binding			ovary(1)	1						GTAACTGCAGGAGGCCCAACT	0.358													3	27					0	0	1	0	0
FAM154A	158297	broad.mit.edu	37	9	18950914	18950914	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:18950914G>A	uc003zni.1	-	2	338	c.60C>T	c.(58-60)CTC>CTT	p.L20L	FAM154A_uc010mip.1_5'UTR	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	20										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		TCTTGGTAGGGAGATGTGGAC	0.428													11	63					0	0	1	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971017	21971017	+	Missense_Mutation	SNP	G	A	A	rs121913386		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:21971017G>A	uc003zpk.2	-	2	553	c.341C>T	c.(340-342)CCC>CTC	p.P114L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A169A	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	114	ANK 4.		P -> L (in non-small cell lung carcinoma).|P -> S (found in some patients with melanoma; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.P114L(21)|p.?(13)|p.P114H(3)|p.H83fs*2(2)|p.P114S(2)|p.A68fs*3(1)|p.P114P(1)|p.V115fs*11(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGGTCCACGGGCAGACGGCC	0.731	P114L(SKMEL30_SKIN)|P114L(WM983B_SKIN)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			4	39					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27169587	27169587	+	Silent	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:27169587A>T	uc003zqi.3	+	4	1030	c.588A>T	c.(586-588)GGA>GGT	p.G196G	TEK_uc010mjc.1_Silent_p.G49G|TEK_uc011lnn.1_Silent_p.G196G|TEK_uc011lno.1_Silent_p.G196G|TEK_uc011lnp.1_Silent_p.G92G|TEK_uc003zqj.1_Silent_p.G173G	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	196	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		ATATAGGAGGAAACCTCTTCA	0.483													12	76					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27206697	27206697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:27206697G>A	uc003zqi.3	+	15	2924	c.2482G>A	c.(2482-2484)GAT>AAT	p.D828N	TEK_uc011lno.1_Missense_Mutation_p.D785N|TEK_uc011lnp.1_Missense_Mutation_p.D680N|TEK_uc003zqj.1_Missense_Mutation_p.D762N	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	828	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CAAATTTCAAGATGTGATTGG	0.458													6	42					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32633685	32633685	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:32633685G>A	uc003zrg.1	-	1	1983	c.1893C>T	c.(1891-1893)ATC>ATT	p.I631I	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	631					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GGAACTGCCGGATTTTGATGG	0.488													12	82					0	0	1	0	0
GALT	2592	broad.mit.edu	37	9	34649471	34649471	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:34649471C>T	uc003zve.2	+	10	1036	c.969C>T	c.(967-969)TAC>TAT	p.Y323Y	GALT_uc003zvf.2_Silent_p.Y214Y|GALT_uc003zvg.2_Silent_p.Y195Y|GALT_uc003zvh.2_Silent_p.Y275Y|IL11RA_uc003zvi.2_5'Flank|IL11RA_uc011loq.1_5'Flank	NM_000155	NP_000146	P07902	GALT_HUMAN	galactose-1-phosphate uridylyltransferase	323			Y -> H (in GALCT).|Y -> D (in GALCT).		galactose catabolic process	cytosol	UDP-glucose:hexose-1-phosphate uridylyltransferase activity|zinc ion binding				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		CTCATTACTACCCTCCGCTCC	0.587									Galactosemia				20	122					0	0	1	0	0
IL11RA	3590	broad.mit.edu	37	9	34660508	34660508	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:34660508G>A	uc003zvi.2	+	11	2436	c.1080G>A	c.(1078-1080)AGG>AGA	p.R360R	IL11RA_uc011loq.1_Silent_p.R360R|IL11RA_uc003zvj.2_Silent_p.R360R|IL11RA_uc003zvk.2_Silent_p.R360R|IL11RA_uc010mke.2_Silent_p.R242R|IL11RA_uc003zvl.2_RNA	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	360	Extracellular (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	CAGATCACAGGGACTCTGTGG	0.577													4	45					0	0	1	0	0
IL11RA	3590	broad.mit.edu	37	9	34660931	34660931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:34660931C>T	uc003zvi.2	+	12	2606	c.1250C>T	c.(1249-1251)CCA>CTA	p.P417L	IL11RA_uc011loq.1_Missense_Mutation_p.P417L|IL11RA_uc003zvk.2_Missense_Mutation_p.P417L|IL11RA_uc010mke.2_Missense_Mutation_p.P299L|IL11RA_uc003zvl.2_RNA	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	417	Cytoplasmic (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	GACAGGCGTCCAGGTGAGTAG	0.527													7	105					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35043898	35043898	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:35043898G>A	uc003zvw.2	+	2	1301	c.1272G>A	c.(1270-1272)TGG>TGA	p.W424*	C9orf131_uc003zvu.2_Nonsense_Mutation_p.W376*|C9orf131_uc003zvv.2_Nonsense_Mutation_p.W351*|C9orf131_uc003zvx.2_Nonsense_Mutation_p.W389*	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	424											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			GAAACCTCTGGGCTTTTGAGT	0.532													8	70					0	0	1	0	0
CREB3	10488	broad.mit.edu	37	9	35735337	35735337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:35735337C>T	uc003zxv.2	+	6	1030	c.577C>T	c.(577-579)CAG>TAG	p.Q193*	TLN1_uc003zxt.2_5'Flank|TLN1_uc003zxu.3_5'Flank|CREB3_uc010mla.2_Nonsense_Mutation_p.Q112*	NM_006368	NP_006359	O43889	CREB3_HUMAN	cAMP responsive element binding protein 3	217	Cytoplasmic (Potential).|Leucine-zipper.				chemotaxis|induction of positive chemotaxis|interspecies interaction between organisms|negative regulation of cell cycle|positive regulation of calcium ion transport|positive regulation of cell migration|positive regulation of transcription, DNA-dependent|reactivation of latent virus|regulation of cell proliferation	cytosol|endoplasmic reticulum|endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|integral to membrane|nucleus|nucleus	cAMP response element binding protein binding|CCR1 chemokine receptor binding|DNA binding|protein dimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity				0	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)	GBM - Glioblastoma multiforme(74;0.0285)		TATGGAGCTTCAGAACAAAGT	0.433													18	228					0	0	1	0	0
TMEM8B	51754	broad.mit.edu	37	9	35853798	35853798	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:35853798C>T	uc003zym.2	+	14	2395	c.1380C>T	c.(1378-1380)GGC>GGT	p.G460G	TMEM8B_uc003zyo.2_Silent_p.G460G	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	460	Cytoplasmic (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						GCCTCGTGGGCCCAGGAGGGG	0.637													13	49					0	0	1	0	0
OR2S2	56656	broad.mit.edu	37	9	35957934	35957934	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:35957934G>A	uc011lpi.1	-	1	218	c.162C>T	c.(160-162)TCC>TCT	p.S54S		NM_019897	NP_063950	Q9NQN1	OR2S1_HUMAN	olfactory receptor, family 2, subfamily S,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00613)|STAD - Stomach adenocarcinoma(86;0.194)			TGTGCAGGCGGGAGTCAAGGA	0.547													8	82					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39085744	39085744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:39085744C>T	uc004abi.2	-	21	3670	c.3431G>A	c.(3430-3432)GGA>GAA	p.G1144E	CNTNAP3_uc004abj.2_Missense_Mutation_p.G1063E|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_3'UTR	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	1144	Laminin G-like 4.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TAAAACCTTTCCCAATATGAG	0.408													14	67					0	0	1	0	0
FAM75A2	642265	broad.mit.edu	37	9	39888258	39888258	+	Silent	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:39888258T>G	uc004abp.2	+	4	1274	c.1245T>G	c.(1243-1245)CTT>CTG	p.L415L		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	415						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		ATAGCCAGCTTTTCTGGGGCC	0.507													22	116					0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43630623	43630623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:43630623C>T	uc011lrb.1	-	1	108	c.79G>A	c.(79-81)GAT>AAT	p.D27N		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	27	Helical; (Potential).					integral to membrane					0						AGGAAGATATCCAACACCCAT	0.483													16	55					0	0	1	0	0
FOXD4L3	286380	broad.mit.edu	37	9	70918873	70918873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:70918873G>A	uc004agm.1	+	1	1091	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K		NM_199135	NP_954586	Q6VB84	FX4L3_HUMAN	forkhead box D4-like 3	336						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				all cancers(8;0.00136)|Epithelial(8;0.0288)|GBM - Glioblastoma multiforme(74;0.0402)|OV - Ovarian serous cystadenocarcinoma(323;0.18)		GGGGTCAGGGGAGCGGGTACA	0.627													23	284					0	0	1	0	0
PGM5	5239	broad.mit.edu	37	9	71006540	71006540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:71006540G>A	uc004agr.2	+	5	1017	c.788G>A	c.(787-789)GGA>GAA	p.G263E		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	263					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						GAAGACTTTGGAGGGCAGCAC	0.473													7	48					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71532599	71532599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:71532599C>T	uc004agu.2	+	9	1212	c.907C>T	c.(907-909)CTC>TTC	p.L303F	PIP5K1B_uc011lrq.1_Missense_Mutation_p.L303F|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	303	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		GCAGAAGGTTCTCTACTCAAC	0.502													12	88					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72047535	72047535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:72047535G>A	uc004ahh.2	-	12	2635	c.2359C>T	c.(2359-2361)CGG>TGG	p.R787W		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	787	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TCAATGATCCGGTGCCCCACA	0.582													14	88					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72067053	72067053	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:72067053C>T	uc004ahh.2	-	9	2229	c.1953G>A	c.(1951-1953)TCG>TCA	p.S651S		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	651					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TACAGTTTTCCGACTTGGAGA	0.532													18	183					0	0	1	0	0
TRPM3	80036	broad.mit.edu	37	9	73151867	73151867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:73151867C>T	uc004aid.2	-	25	4370	c.4126G>A	c.(4126-4128)GAA>AAA	p.E1376K	TRPM3_uc004ahu.2_Missense_Mutation_p.E1218K|TRPM3_uc004ahv.2_Missense_Mutation_p.E1178K|TRPM3_uc004ahw.2_Missense_Mutation_p.E1248K|TRPM3_uc004ahx.2_Missense_Mutation_p.E1235K|TRPM3_uc004ahy.2_Missense_Mutation_p.E1238K|TRPM3_uc004ahz.2_Missense_Mutation_p.E1225K|TRPM3_uc004aia.2_Missense_Mutation_p.E1223K|TRPM3_uc004aib.2_Missense_Mutation_p.E1213K|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1401	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GCTTTGGGTTCTTTTGCTACA	0.448													20	105					0	0	1	0	0
GDA	9615	broad.mit.edu	37	9	74828873	74828873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:74828873G>A	uc004aiq.2	+	5	727	c.544G>A	c.(544-546)GAG>AAG	p.E182K	GDA_uc011lse.1_Missense_Mutation_p.E108K|GDA_uc011lsf.1_Missense_Mutation_p.E108K|GDA_uc004air.2_Missense_Mutation_p.E182K|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.E140K|GDA_uc004ait.1_Missense_Mutation_p.E108K	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	182					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		AGAATACAAGGAGACCACTGA	0.398													12	83					0	0	1	0	0
GDA	9615	broad.mit.edu	37	9	74838073	74838073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:74838073C>T	uc004aiq.2	+	7	827	c.644C>T	c.(643-645)TCC>TTC	p.S215F	GDA_uc011lse.1_Missense_Mutation_p.S141F|GDA_uc011lsf.1_Missense_Mutation_p.S141F|GDA_uc004air.2_Missense_Mutation_p.S215F|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Intron|GDA_uc004ait.1_Missense_Mutation_p.S141F	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	215					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		CCACGTTTTTCCCTCTCCTGC	0.338													8	102					0	0	1	0	0
ALDH1A1	216	broad.mit.edu	37	9	75531841	75531841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:75531841G>A	uc004ajd.2	-	9	1083	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S	ALDH1A1_uc011lsh.1_Missense_Mutation_p.P265S|ALDH1A1_uc011lsg.1_Missense_Mutation_p.P170S	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1	344					cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CTTACCTGAGGGCCTTGAGTG	0.398													4	66					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77257718	77257718	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:77257718C>T	uc004aji.2	+	4	706	c.657C>T	c.(655-657)ACC>ACT	p.T219T	RORB_uc004ajh.2_Silent_p.T208T	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	219	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CAGGGATAACCATGACTGAAA	0.393													9	99					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77353455	77353456	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:77353455_77353456CC>TT	uc004ajl.1	-	36	5881_5882	c.5643_5644GG>AA	c.(5641-5646)GGGGAG>GGAAAG	p.E1882K	TRPM6_uc004ajk.1_Missense_Mutation_p.E1877K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.E833K|TRPM6_uc010mpd.1_Missense_Mutation_p.E715K|TRPM6_uc010mpe.1_Missense_Mutation_p.E429K|TRPM6_uc004ajj.1_Missense_Mutation_p.E838K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1882	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTCCGGAACTCCCCTGTCATAT	0.465													4	54					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77415188	77415188	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:77415188C>T	uc004ajl.1	-	17	2458	c.2220G>A	c.(2218-2220)AGG>AGA	p.R740R	TRPM6_uc004ajk.1_Silent_p.R735R|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.R118R	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	740	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AAGAGTTTTTCCTCATTTTCA	0.393													5	44					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78784672	78784672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:78784672C>T	uc004ajz.2	+	13	2210	c.1672C>T	c.(1672-1674)CAT>TAT	p.H558Y	PCSK5_uc004ajy.2_Missense_Mutation_p.H558Y|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	558	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CATGACCATTCATTGCTGGGG	0.423													11	93					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	78942989	78942989	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:78942989G>A	uc004akc.1	+	5	799	c.579G>A	c.(577-579)CTG>CTA	p.L193L						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		AGAAAGGCCTGATCATGAACC	0.587													55	344					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320514	79320514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:79320514G>A	uc010mpk.2	-	8	6800	c.6676C>T	c.(6676-6678)CCA>TCA	p.P2226S	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2226					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCAATCCTTGGGATTCTTCTG	0.423													3	69					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324450	79324450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:79324450C>T	uc010mpk.2	-	8	2864	c.2740G>A	c.(2740-2742)GAA>AAA	p.E914K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	914					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCTACCTTTTCATATACCTTG	0.398													16	143					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465512	79465512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:79465512C>T	uc010mpk.2	-	3	335	c.211G>A	c.(211-213)GAG>AAG	p.E71K	PRUNE2_uc004akn.2_Missense_Mutation_p.E71K	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	71					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AACCTCGTCTCGGTGAAGTAG	0.393													11	164					0	0	1	0	0
VPS13A	23230	broad.mit.edu	37	9	79936185	79936185	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:79936185A>T	uc004akr.2	+	43	5776	c.5516A>T	c.(5515-5517)GAC>GTC	p.D1839V	VPS13A_uc004akp.3_Missense_Mutation_p.D1839V|VPS13A_uc004akq.3_Missense_Mutation_p.D1839V|VPS13A_uc004aks.2_Missense_Mutation_p.D1800V|VPS13A_uc004akt.2_Missense_Mutation_p.D179V	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1839					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CATTCAAAAGACCAATTAAAC	0.294													5	20					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609113	84609113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:84609113G>A	uc004amn.2	+	4	3775	c.3728G>A	c.(3727-3729)GGC>GAC	p.G1243D		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1243						integral to membrane					0						AATTCCCAGGGCATCTCGAGT	0.532													33	280					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609683	84609683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:84609683C>T	uc004amn.2	+	4	4345	c.4298C>T	c.(4297-4299)TCC>TTC	p.S1433F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1433						integral to membrane					0						GAGCCCCTTTCCTTCCCAGTG	0.547													3	44					0	0	1	0	0
RASEF	158158	broad.mit.edu	37	9	85613284	85613284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:85613284C>T	uc004amo.1	-	13	2062	c.1801G>A	c.(1801-1803)GAG>AAG	p.E601K		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	601					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						ACTTGCCTCTCCTGACCAGCT	0.448													22	305					0	0	1	0	0
RASEF	158158	broad.mit.edu	37	9	85613350	85613350	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:85613350G>A	uc004amo.1	-	13	1996	c.1735C>T	c.(1735-1737)CAA>TAA	p.Q579*		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	579					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						GTTTTCATTTGGAAATCAACT	0.443													9	154					0	0	1	0	0
SLC28A3	64078	broad.mit.edu	37	9	86912889	86912889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:86912889G>A	uc010mpz.2	-	7	840	c.715C>T	c.(715-717)CTT>TTT	p.L239F	SLC28A3_uc011lsy.1_Missense_Mutation_p.L170F|SLC28A3_uc004anu.1_Missense_Mutation_p.L239F|SLC28A3_uc010mqb.2_Missense_Mutation_p.L170F	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	239	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						AAGAGCCCAAGAAGAAACTGT	0.413													9	103					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90500585	90500585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:90500585G>A	uc004app.3	+	4	1218	c.1183G>A	c.(1183-1185)GGG>AGG	p.G395R	C9orf79_uc004apo.1_Missense_Mutation_p.G207R	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	395						integral to membrane				ovary(3)	3						GACATCACTGGGGAAGGAGTG	0.567													8	117					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502271	90502271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:90502271G>A	uc004app.3	+	4	2904	c.2869G>A	c.(2869-2871)GGG>AGG	p.G957R		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	957						integral to membrane				ovary(3)	3						CAAGGGCAGGGGGTGTTCTCA	0.617													8	78					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90746869	90746869	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:90746869G>A	uc011lti.1	-	4	1112	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F						SubName: Full=cDNA FLJ59639;																		ATAGGACTGGGAAAGAGGATT	0.527													13	430					0	0	1	0	0
S1PR3	1903	broad.mit.edu	37	9	91616643	91616643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:91616643G>A	uc004aqe.2	+	2	924	c.528G>A	c.(526-528)TGG>TGA	p.W176*		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	176	Helical; Name=4; (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						TTCTGGGCTGGAACTGCCTGC	0.582											OREG0019291	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	61					0	0	1	0	0
SEMA4D	10507	broad.mit.edu	37	9	91994241	91994241	+	Missense_Mutation	SNP	G	A	A	rs148535806		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:91994241G>A	uc004aqo.1	-	18	2539	c.1967C>T	c.(1966-1968)CCC>CTC	p.P656L	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.P654L	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	656	Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						TGACAAGGTGGGGGCCACTAC	0.567													25	265					0	0	1	0	0
NOL8	55035	broad.mit.edu	37	9	95076677	95076677	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:95076677T>A	uc004arv.2	-	7	2567	c.2230A>T	c.(2230-2232)AAT>TAT	p.N744Y	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.N676Y	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	744					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						TCTGACGAATTACTAATAGAA	0.438													3	32					0	0	1	0	0
CENPP	401541	broad.mit.edu	37	9	95142075	95142075	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:95142075T>G	uc004arz.2	+	5	1038	c.498T>G	c.(496-498)TTT>TTG	p.F166L	CENPP_uc010mqx.2_Missense_Mutation_p.F54L|CENPP_uc004ary.1_Missense_Mutation_p.F166L	NM_001012267	NP_001012267	Q6IPU0	CENPP_HUMAN	centromere protein P	166					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				ovary(2)	2						TGTTCATGTTTTTCCGAAGCC	0.318													5	69					0	0	1	0	0
WNK2	65268	broad.mit.edu	37	9	96019413	96019413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:96019413C>T	uc004ati.1	+	10	2374	c.2374C>T	c.(2374-2376)CCT>TCT	p.P792S	WNK2_uc011lud.1_Missense_Mutation_p.P792S|WNK2_uc004atj.2_Missense_Mutation_p.P792S|WNK2_uc004atk.2_Missense_Mutation_p.P429S|WNK2_uc010mrc.1_Missense_Mutation_p.P740S	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	792					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						TGCTCAAGTCCCTCCGCAGGT	0.667													8	35					0	0	1	0	0
HIATL1	84641	broad.mit.edu	37	9	97207282	97207282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:97207282C>T	uc004aur.2	+	6	816	c.547C>T	c.(547-549)CCG>TCG	p.P183S	HIATL1_uc011luh.1_Missense_Mutation_p.P118S	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	183	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				TGTCAGCAGCCCGGCCATTGG	0.557													31	168					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98220343	98220343	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:98220343G>A	uc004avk.3	-	18	3308	c.3120C>T	c.(3118-3120)TTC>TTT	p.F1040F	PTCH1_uc010mro.2_Silent_p.F889F|PTCH1_uc010mrp.2_Silent_p.F889F|PTCH1_uc010mrq.2_Silent_p.F889F|PTCH1_uc004avl.3_Silent_p.F889F|PTCH1_uc010mrr.2_Silent_p.F974F|PTCH1_uc004avm.3_Silent_p.F1039F	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1040	Helical; (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.L1041fs*104(2)|p.I963fs*2(1)|p.L1040fs*104(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CGCACACGAGGAATGTGCAGG	0.552									Basal_Cell_Nevus_syndrome				14	72					0	0	1	0	0
CORO2A	7464	broad.mit.edu	37	9	100888950	100888950	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:100888950A>T	uc004ayl.2	-	11	1593	c.1327T>A	c.(1327-1329)TCC>ACC	p.S443T	CORO2A_uc004aym.2_Missense_Mutation_p.S443T|CORO2A_uc004ayk.2_Missense_Mutation_p.S90T	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	443					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				TCCAACAGGGAGGAAGACCTC	0.552													41	202					0	0	1	0	0
GABBR2	9568	broad.mit.edu	37	9	101156521	101156521	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:101156521C>T	uc004ays.2	-	9	1470	c.1314G>A	c.(1312-1314)AAG>AAA	p.K438K		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	438	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	ACTCTCCCACCTTCACCTCCC	0.572													21	79					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101818679	101818679	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:101818679G>A	uc004azb.1	+	35	3536	c.3330G>A	c.(3328-3330)CTG>CTA	p.L1110L		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1110	Nonhelical region 9 (NC9).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CAGCTATCCTGGGAGCAGGTT	0.622													3	40					0	0	1	0	0
BAAT	570	broad.mit.edu	37	9	104133572	104133572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:104133572C>T	uc010mtd.2	-	2	224	c.115G>A	c.(115-117)GAA>AAA	p.E39K	BAAT_uc004bbd.3_Missense_Mutation_p.E39K	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	39					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	TCTCCGTTTTCATCTTCCAGT	0.478													5	58					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432378	104432378	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:104432378C>T	uc004bbp.1	-	3	2917	c.2316G>A	c.(2314-2316)AAG>AAA	p.K772K	GRIN3A_uc004bbq.1_Silent_p.K772K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	772	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CTTCATAGATCTTCTCACCTA	0.393													4	61					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433278	104433278	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:104433278G>A	uc004bbp.1	-	3	2017	c.1416C>T	c.(1414-1416)CCC>CCT	p.P472P	GRIN3A_uc004bbq.1_Silent_p.P472P	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	472	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GCTTTCCCATGGGGTCATGTT	0.502													24	121					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767709	105767709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:105767709G>A	uc004bbs.2	+	5	866	c.796G>A	c.(796-798)GAG>AAG	p.E266K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	266	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				AGATGCAAAGGAGATTAAAAA	0.299													10	51					0	0	1	0	0
OR13C4	138804	broad.mit.edu	37	9	107288855	107288855	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107288855G>A	uc011lvn.1	-	1	636	c.636C>T	c.(634-636)CTC>CTT	p.L212L		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAAAAATCACGAGCAGAGGAA	0.418													10	63					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298434	107298434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107298434C>T	uc004bcb.1	-	1	661	c.661G>A	c.(661-663)GAT>AAT	p.D221N		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	221	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						AGGGATATATCAGCACAGGCC	0.393													6	111					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298818	107298818	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107298818G>A	uc004bcb.1	-	1	277	c.277C>T	c.(277-279)CTG>TTG	p.L93L		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	93	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						AGGTTGCCCAGGAAGAAGTAC	0.398													6	44					0	0	1	0	0
OR13C8	138802	broad.mit.edu	37	9	107331809	107331809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107331809G>A	uc011lvo.1	+	1	361	c.361G>A	c.(361-363)GAC>AAC	p.D121N		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GATGGCACTGGACCGCTATGT	0.522													12	60					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107361157	107361157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107361157C>T	uc011lvp.1	-	1	538	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCTAGAATTTCACAGGTGAAA	0.423													27	123					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367195	107367195	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107367195G>A	uc011lvq.1	-	1	714	c.714C>T	c.(712-714)TCC>TCT	p.S238S		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AACAGGTAGAGGAAGCTTTGC	0.403													7	45					0	0	1	0	0
OR13D1	286365	broad.mit.edu	37	9	107457101	107457101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:107457101G>A	uc011lvs.1	+	1	399	c.399G>A	c.(397-399)ATG>ATA	p.M133I		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTCTGCAGATGGTTGTGTCCC	0.483													20	154					0	0	1	0	0
KLF4	9314	broad.mit.edu	37	9	110249759	110249759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:110249759G>A	uc004bdh.2	-	3	1510	c.889C>T	c.(889-891)CCC>TCC	p.P297S	KLF4_uc004bdf.1_Missense_Mutation_p.P256S|KLF4_uc004bdg.2_Missense_Mutation_p.P306S	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	306	Pro-rich.				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						CGCCCCAGGGGGAAGTCGTGT	0.682													4	17					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113221378	113221378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:113221378C>T	uc010mtz.2	-	19	3675	c.3338G>A	c.(3337-3339)GGA>GAA	p.G1113E	SVEP1_uc010mua.1_Missense_Mutation_p.G1113E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1113					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CGAGAATTTTCCTTCTGGACA	0.423													22	101					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113312205	113312205	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:113312205G>A	uc010mtz.2	-	2	1048	c.711C>T	c.(709-711)ACC>ACT	p.T237T	SVEP1_uc010mua.1_Silent_p.T237T|SVEP1_uc004beu.2_Silent_p.T237T|SVEP1_uc004bev.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	237	VWFA.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTCCTTTGGGGTGGAAGCCA	0.483													3	21					0	0	1	0	0
OR2K2	26248	broad.mit.edu	37	9	114089932	114089932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:114089932G>A	uc011lwp.1	-	1	782	c.782C>T	c.(781-783)CCT>CTT	p.P261L		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	290	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGATGAAGAAGGCTTTAGGTA	0.413													9	42					0	0	1	0	0
DNAJC25-GNG10	552891	broad.mit.edu	37	9	114429186	114429186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:114429186C>T	uc004bfn.2	+	2	450	c.428C>T	c.(427-429)CCC>CTC	p.P143L	GNG10_uc011lws.1_RNA|GNG10_uc004bfp.2_Missense_Mutation_p.P58L	NM_004125	NP_004116	Q9H1X3	DJC25_HUMAN	DNAJC25-GNG10 protein	Error:Variant_position_missing_in_Q9H1X3_after_alignment					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						GGAAGTAACCCCTTCCGGGAG	0.512													15	32					0	0	1	0	0
C9orf84	158401	broad.mit.edu	37	9	114490225	114490225	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:114490225C>A	uc004bfr.2	-	11	1465	c.1330G>T	c.(1330-1332)GAA>TAA	p.E444*	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Nonsense_Mutation_p.E405*|C9orf84_uc010mug.2_Nonsense_Mutation_p.E390*	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	444										ovary(2)	2						TCTGGTACTTCTTTTGCCAGA	0.333													3	28					0.0215528	0.0216169	1	1	0
SLC31A1	1317	broad.mit.edu	37	9	116021091	116021091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:116021091C>T	uc004bgu.2	+	4	506	c.320C>T	c.(319-321)CCT>CTT	p.P107L	FKBP15_uc010muu.1_Intron|SLC31A1_uc004bgv.3_Missense_Mutation_p.P107L	NM_001859	NP_001850	O15431	COPT1_HUMAN	solute carrier family 31 (copper transporters),	107	Cytoplasmic (Potential).					integral to plasma membrane	copper ion transmembrane transporter activity				0						AATTCCATGCCTGTCCCAGGA	0.453													15	76					0	0	1	0	0
ORM1	5004	broad.mit.edu	37	9	117087381	117087381	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:117087381C>T	uc004bik.3	+	5	600	c.489C>T	c.(487-489)CTC>CTT	p.L163L	ORM1_uc011lxo.1_Intron	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	163					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	ACGAAGCTCTCGACTGCTTGC	0.572													33	117					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119567939	119567939	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:119567939G>A	uc004bjs.1	-	13	2469	c.2368C>T	c.(2368-2370)CAA>TAA	p.Q790*	ASTN2_uc004bjr.1_Nonsense_Mutation_p.Q786*|ASTN2_uc004bjt.1_Nonsense_Mutation_p.Q739*	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	790	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						ACTTGGCCTTGGTTCACATGC	0.498													19	104					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119568089	119568089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:119568089C>T	uc004bjs.1	-	13	2319	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K	ASTN2_uc004bjr.1_Missense_Mutation_p.E736K|ASTN2_uc004bjt.1_Missense_Mutation_p.E689K	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	740	Extracellular (Potential).|EGF-like 3.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGTTTGTACTCCTCCACGCAA	0.488													23	90					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	120053707	120053707	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:120053707G>A	uc004bjs.1	-	2	629	c.528C>T	c.(526-528)TCC>TCT	p.S176S	ASTN2_uc004bjr.1_Silent_p.S176S|ASTN2_uc004bjt.1_Silent_p.S176S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	176	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGCTGCTCATGGAGACGTGGA	0.592													16	94					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929509	121929509	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:121929509C>T	uc004bkc.2	-	8	2595	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	713					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGTTTCCCCGGGGCCA	0.552													21	95					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929824	121929824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:121929824C>T	uc004bkc.2	-	8	2280	c.1824G>A	c.(1822-1824)TGG>TGA	p.W608*		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	608					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AAAATGTTTTCCACCGATTGC	0.557													28	146					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121976369	121976369	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:121976369G>A	uc004bkc.2	-	6	1206	c.750C>T	c.(748-750)ATC>ATT	p.I250I	DBC1_uc004bkd.2_Silent_p.I250I	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	250	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CATTGCACATGATATAGCTCA	0.512													9	59					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123182191	123182191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:123182191G>A	uc004bkf.2	-	27	4233	c.4052C>T	c.(4051-4053)CCT>CTT	p.P1351L	CDK5RAP2_uc010mvi.2_Missense_Mutation_p.P360L|CDK5RAP2_uc004bke.2_Missense_Mutation_p.P636L|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.P1351L|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.P616L|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.P616L|CDK5RAP2_uc011lya.1_Missense_Mutation_p.P616L|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.P1121L|CDK5RAP2_uc004bki.2_Missense_Mutation_p.P1118L	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	1351					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						TGAAGGCTCAGGAGATTCAGG	0.423													20	82					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123779751	123779751	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:123779751G>A	uc004bkv.2	-	14	1785	c.1755C>T	c.(1753-1755)GGC>GGT	p.G585G	C5_uc010mvm.1_Silent_p.G585G|C5_uc010mvn.1_Silent_p.G585G	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	585					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ACACAGTTTGGCCTGGAGAAT	0.418													8	44					0	0	1	0	0
LHX6	26468	broad.mit.edu	37	9	124979498	124979498	+	Silent	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:124979498G>T	uc010mvw.2	-	4	553	c.444C>A	c.(442-444)CGC>CGA	p.R148R	LHX6_uc004blx.3_Silent_p.R177R|LHX6_uc004bly.3_Silent_p.R177R	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	148	LIM zinc-binding 2.|Required for interaction with LBD1 (By similarity).				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGGCGTTGCCGCGAGCTCTCC	0.667													16	77					3.41278e-10	3.4512e-10	1	1	0
OR1J1	347168	broad.mit.edu	37	9	125239753	125239753	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125239753G>A	uc011lyu.1	-	1	453	c.453C>T	c.(451-453)ATC>ATT	p.I151I	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						ACGCACAAGCGATGACCCAGG	0.542													4	22					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125281455	125281455	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125281455C>T	uc011lyw.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTCTGAGTTCCTCCTCCTGG	0.512													27	146					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125423950	125423950	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125423950A>G	uc011lza.1	+	1	106	c.106A>G	c.(106-108)AGA>GGA	p.R36G		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	36	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AGATGTTGGAAGAATCTGTTA	0.343													6	59					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424883	125424883	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125424883A>G	uc011lza.1	+	1	1039	c.1039A>G	c.(1039-1041)AAG>GAG	p.K347E		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	347	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CAAAGACATGAAGCAGGGTTT	0.393													8	82					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125438074	125438074	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125438074C>T	uc011lzb.1	+	1	666	c.666C>T	c.(664-666)CTC>CTT	p.L222L		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TAAGAATTCTCATCGCTGTTC	0.463													6	43					0	0	1	0	0
OR1L6	392390	broad.mit.edu	37	9	125512920	125512920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125512920C>T	uc011lzc.1	+	1	902	c.902C>T	c.(901-903)TCC>TTC	p.S301F		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	301	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGCCCCTGTCCATGTACTCA	0.498													9	42					0	0	1	0	0
RC3H2	54542	broad.mit.edu	37	9	125617604	125617604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:125617604G>A	uc010mwc.1	-	15	2915	c.2674C>T	c.(2674-2676)CCA>TCA	p.P892S	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.P892S|RC3H2_uc004bne.3_Missense_Mutation_p.P892S	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	892						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						GGAATTATTGGATCTTCTTCT	0.413													11	72					0	0	1	0	0
NR5A1	2516	broad.mit.edu	37	9	127262837	127262837	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:127262837G>A	uc004boo.1	-	4	589	c.402C>T	c.(400-402)CCC>CCT	p.P134P		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	134					cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						AGTCCGGTGCGGGAGGGGGCG	0.711													17	48					0	0	1	0	0
ZNF79	7633	broad.mit.edu	37	9	130207131	130207131	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:130207131T>C	uc004bqw.3	+	5	1566	c.1152T>C	c.(1150-1152)ACT>ACC	p.T384T	ZNF79_uc011maf.1_Silent_p.T360T|ZNF79_uc011mag.1_Silent_p.T360T	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GGACTCACACTGGGGAGAAAC	0.547													4	96					0	0	1	0	0
ZNF79	7633	broad.mit.edu	37	9	130207140	130207140	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:130207140A>G	uc004bqw.3	+	5	1575	c.1161A>G	c.(1159-1161)AAA>AAG	p.K387K	ZNF79_uc011maf.1_Silent_p.K363K|ZNF79_uc011mag.1_Silent_p.K363K	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	387					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTGGGGAGAAACCCTACAAGT	0.532													4	91					0	0	1	0	0
TOR2A	27433	broad.mit.edu	37	9	130494319	130494319	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:130494319G>A	uc004brs.3	-	5	1015	c.960C>T	c.(958-960)TTC>TTT	p.F320F	TOR2A_uc004brt.3_3'UTR|TOR2A_uc004brw.3_3'UTR|TOR2A_uc011maj.1_3'UTR|TOR2A_uc004bru.3_Silent_p.F158F|TOR2A_uc004brv.3_RNA|TOR2A_uc004brx.1_3'UTR	NM_001085347	NP_001078816	Q5JU69	TOR2A_HUMAN	torsin family 2, member A isoform a	320					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum|extracellular region	ATP binding|nucleoside-triphosphatase activity				0						AGAGTCAGAGGAAGAAGGCGA	0.607													7	58					0	0	1	0	0
PIP5KL1	138429	broad.mit.edu	37	9	130687429	130687429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:130687429C>T	uc011mao.1	-	9	919	c.874G>A	c.(874-876)GAT>AAT	p.D292N	PIP5KL1_uc004bsu.2_Missense_Mutation_p.D89N	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	292	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						CCCCTCTCATCCTCGTGGAGA	0.602													9	109					0	0	1	0	0
PIP5KL1	138429	broad.mit.edu	37	9	130688200	130688200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:130688200G>A	uc011mao.1	-	8	754	c.709C>T	c.(709-711)CCC>TCC	p.P237S	PIP5KL1_uc004bsu.2_Missense_Mutation_p.P34S	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	237	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						AGAACAAGGGGGCTGCCCTCA	0.582													23	82					0	0	1	0	0
DNM1	1759	broad.mit.edu	37	9	131010938	131010938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:131010938C>T	uc011mau.1	+	19	2069	c.1982C>T	c.(1981-1983)ACC>ATC	p.T661I	DNM1_uc011mat.1_Missense_Mutation_p.T661I|DNM1_uc004bub.1_Missense_Mutation_p.T34I|DNM1_uc004buc.1_Missense_Mutation_p.T128I|DNM1_uc004bud.3_RNA	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	661	GED.				receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						CAAGTGGAGACCATCCGGAAT	0.537													43	202					0	0	1	0	0
GOLGA2	2801	broad.mit.edu	37	9	131019733	131019733	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:131019733G>A	uc011maw.1	-	25	2722	c.2709C>T	c.(2707-2709)TTC>TTT	p.F903F	GOLGA2_uc010mxw.2_Silent_p.F226F|GOLGA2_uc004buh.2_Intron	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	903						Golgi cisterna membrane	protein binding			ovary(1)	1						CAGCTGCCAGGAATCTGCCAT	0.647													6	40					0	0	1	0	0
ZER1	10444	broad.mit.edu	37	9	131502360	131502360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:131502360G>A	uc004bwa.1	-	13	2325	c.1892C>T	c.(1891-1893)TCC>TTC	p.S631F		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	631	ARM 4.				ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						GGCATTGTAGGAAACCTCGAT	0.582													3	20					0	0	1	0	0
CRAT	1384	broad.mit.edu	37	9	131858390	131858390	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:131858390G>A	uc004bxh.2	-	13	1834	c.1552C>T	c.(1552-1554)CGA>TGA	p.R518*	CRAT_uc004bxg.2_Nonsense_Mutation_p.R497*|CRAT_uc004bxk.3_Nonsense_Mutation_p.R497*	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	518				R->Q: Increases the KM for carnitine 230- fold and reduces enzyme activity almost 100-fold.	energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	AGCAGGTGTCGATCAAAGGCC	0.642													22	163					0	0	1	0	0
AIF1L	83543	broad.mit.edu	37	9	133993169	133993169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:133993169G>A	uc004cab.1	+	5	334	c.229G>A	c.(229-231)GAG>AAG	p.E77K	AIF1L_uc004cad.1_Missense_Mutation_p.E103K|AIF1L_uc004cae.1_Missense_Mutation_p.E77K|AIF1L_uc004cac.1_RNA|AIF1L_uc011mce.1_Missense_Mutation_p.E82K	NM_031426	NP_113614	Q9BQI0	AIF1L_HUMAN	ionized calcium binding adapter molecule 2	77	EF-hand 1.					actin cytoskeleton|cytoplasm|focal adhesion|ruffle membrane	actin filament binding|calcium ion binding				0						GAGGATGATGGAGAAGCTTGG	0.517													15	71					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135374955	135374955	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:135374955C>T	uc004cbn.2	+	4	648	c.600C>T	c.(598-600)CTC>CTT	p.L200L	C9orf171_uc004cbo.2_Silent_p.L164L	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	200										ovary(4)|large_intestine(1)	5						CGCCCCCTCTCCCTCCAAACA	0.597													29	91					0	0	1	0	0
DDX31	64794	broad.mit.edu	37	9	135517413	135517413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:135517413C>T	uc004cbq.1	-	14	1885	c.1733G>A	c.(1732-1734)AGA>AAA	p.R578K	DDX31_uc010mzu.1_Missense_Mutation_p.R578K|DDX31_uc004cbr.1_Missense_Mutation_p.R578K	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	578	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		GACGCCTCTTCTGGAATGTGA	0.428													9	53					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136289454	136289454	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:136289454C>T	uc004cdv.3	+	3	630	c.186C>T	c.(184-186)TCC>TCT	p.S62S	ADAMTS13_uc004cdp.3_5'UTR|ADAMTS13_uc004cdt.1_Silent_p.S62S|ADAMTS13_uc004cdu.1_Silent_p.S62S|ADAMTS13_uc004cdw.3_Silent_p.S62S|ADAMTS13_uc004cdx.3_Silent_p.S62S|ADAMTS13_uc004cdq.1_Silent_p.S62S|ADAMTS13_uc004cds.1_5'UTR|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	62					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GCCCTCCTTCCCCTGGCTTCc	0.567													30	116					0	0	1	0	0
BRD3	8019	broad.mit.edu	37	9	136916766	136916766	+	Silent	SNP	C	T	T	rs12339799		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:136916766C>T	uc004cew.2	-	4	605	c.417G>A	c.(415-417)CAG>CAA	p.Q139Q	BRD3_uc004cex.2_Silent_p.Q139Q	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	139						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		CTTGGGGCATCTGGGCCACTT	0.532			T	NUT|C15orf55	lethal midline carcinoma of young people								11	44					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137707456	137707456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:137707456C>T	uc004cfe.2	+	51	4431	c.4049C>T	c.(4048-4050)CCC>CTC	p.P1350L		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1350	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCTGGCCCCCCCGGAGAGCCT	0.627													5	20					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137710502	137710502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:137710502G>A	uc004cfe.2	+	55	4613	c.4231G>A	c.(4231-4233)GGA>AGA	p.G1411R		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1411	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CGTCCTGCAGGGAGAAGCCGG	0.697													4	19					0	0	1	0	0
LCN9	392399	broad.mit.edu	37	9	138557706	138557706	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:138557706G>A	uc004cgk.1	+	6	476	c.476_splice	c.e6-1	p.D159_splice		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9							extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		TGTCCTTCCAGATCCCTGCTA	0.697													4	26					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138651672	138651672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:138651672G>A	uc011mdq.1	+	11	1076	c.1002G>A	c.(1000-1002)ATG>ATA	p.M334I	KCNT1_uc011mdr.1_Missense_Mutation_p.M161I|KCNT1_uc010nbf.2_Missense_Mutation_p.M289I|KCNT1_uc004cgo.1_Missense_Mutation_p.M83I	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	334						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TGGTCATCATGATCTGCGTGG	0.632													7	58					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139361533	139361533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:139361533G>A	uc004chx.2	-	6	4114	c.3805C>T	c.(3805-3807)CCA>TCA	p.P1269S	SEC16A_uc004chv.3_Missense_Mutation_p.P659S|SEC16A_uc004chw.2_Missense_Mutation_p.P1269S|SEC16A_uc010nbn.2_Missense_Mutation_p.P1269S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1091	Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CAGTGACCTGGATCTGTGAGC	0.473													14	55					0	0	1	0	0
ANAPC2	29882	broad.mit.edu	37	9	140074636	140074636	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:140074636G>A	uc004clr.1	-	10	1960	c.1887C>T	c.(1885-1887)CTC>CTT	p.L629L	ANAPC2_uc004clq.1_Silent_p.L485L	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	629					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		GAGGTACCTTGAGCTGCTCAT	0.632													9	26					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140807694	140807694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:140807694G>A	uc004cog.2	+	4	738	c.593G>A	c.(592-594)AGG>AAG	p.R198K		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	198	Helical; Name=S4 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CGTGTGCTGAGGCCCCTGAAG	0.567													9	51					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140938287	140938287	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:140938287G>A	uc004cog.2	+	21	3493	c.3348G>A	c.(3346-3348)GTG>GTA	p.V1116V	CACNA1B_uc011mfd.1_Silent_p.V646V|CACNA1B_uc004coi.2_Silent_p.V326V	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1116	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CGGATGACGTGATGAGGAGCG	0.602													55	199					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140952542	140952542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:140952542G>A	uc004cog.2	+	28	4293	c.4148G>A	c.(4147-4149)GGT>GAT	p.G1383D	CACNA1B_uc011mfd.1_Missense_Mutation_p.G913D|CACNA1B_uc004coi.2_Missense_Mutation_p.G597D	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1383	III.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GAGGAGCAGGGTCCAAGCCCT	0.532													5	69					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141016329	141016329	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr9:141016329C>T	uc004cog.2	+	46	7043	c.6898C>T	c.(6898-6900)CTG>TTG	p.L2300L	CACNA1B_uc004coi.2_Silent_p.L1512L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2300	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CGTGTCCTCCCTGACCTCCCA	0.662													15	140					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3235751	3235751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:3235751C>T	uc004crg.3	-	6	6128	c.5971G>A	c.(5971-5973)GTG>ATG	p.V1991M		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1991	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTTTGCCACACCCTCCTGTCA	0.582													6	22					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3239094	3239094	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:3239094C>T	uc004crg.3	-	5	4789	c.4632G>A	c.(4630-4632)GTG>GTA	p.V1544V		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1544						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTCATTGTTCACTGGGGTTG	0.418													18	75					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3239851	3239851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:3239851G>A	uc004crg.3	-	5	4032	c.3875C>T	c.(3874-3876)TCC>TTC	p.S1292F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1292						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTAATCTAAGGAATCATAAGG	0.368													3	40					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241044	3241044	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:3241044C>T	uc004crg.3	-	5	2839	c.2682G>A	c.(2680-2682)AAG>AAA	p.K894K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	894						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCTCCTCAGTCTTCTCGGAAA	0.473													5	44					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3248730	3248730	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:3248730G>A	uc004crg.3	-	3	430	c.273C>T	c.(271-273)ATC>ATT	p.I91I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	91	LRR 2.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGATGCTTGGGATCTCATTGC	0.428													6	34					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736727	12736727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:12736727C>T	uc004cuz.1	+	16	4288	c.3782C>T	c.(3781-3783)TCA>TTA	p.S1261L	FRMPD4_uc011mij.1_Missense_Mutation_p.S1253L	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1261					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TACATTCCTTCAGAGGAGAGA	0.597													9	37					0	0	1	0	0
BMX	660	broad.mit.edu	37	X	15526477	15526477	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:15526477A>G	uc004cww.2	+	2	189	c.1A>G	c.(1-3)ATG>GTG	p.M1V	BMX_uc004cwx.3_Missense_Mutation_p.M1V|BMX_uc004cwy.3_Missense_Mutation_p.M1V	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	1					cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					GGATGATAATATGGATACAAA	0.289													2	12					0	0	1	0	0
CTPS2	56474	broad.mit.edu	37	X	16720940	16720940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:16720940G>A	uc004cxk.2	-	2	830	c.86C>T	c.(85-87)TCA>TTA	p.S29L	CTPS2_uc004cxl.2_Missense_Mutation_p.S29L|CTPS2_uc004cxm.2_Missense_Mutation_p.S29L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	29					glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					GAGTCCACATGATTTTAGAAT	0.458													21	77					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21444710	21444710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:21444710G>A	uc004czx.1	+	2	196	c.160G>A	c.(160-162)GAT>AAT	p.D54N	CNKSR2_uc004czw.2_Missense_Mutation_p.D54N|CNKSR2_uc011mjn.1_Missense_Mutation_p.D54N|CNKSR2_uc011mjo.1_Missense_Mutation_p.D54N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	54	SAM.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						GGAGCTAGAAGATCTGGGGGT	0.478													9	28					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21624965	21624965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:21624965C>T	uc004czx.1	+	19	2149	c.2113C>T	c.(2113-2115)CCC>TCC	p.P705S	CNKSR2_uc004czw.2_Missense_Mutation_p.P705S|CNKSR2_uc011mjn.1_Missense_Mutation_p.P656S|CNKSR2_uc011mjo.1_Missense_Mutation_p.P675S|CNKSR2_uc004czy.2_Missense_Mutation_p.P297S	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	705	Poly-Pro.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						TAGCCCTCCACCCCCATATGA	0.413													10	29					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839871	27839871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:27839871C>T	uc004dbw.2	+	3	675	c.448C>T	c.(448-450)CCT>TCT	p.P150S		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	150	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						GAGCCAGTTCCCTGTAATCCT	0.438													10	25					0	0	1	0	0
FTHL17	53940	broad.mit.edu	37	X	31089818	31089818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:31089818C>T	uc004dcl.1	-	1	356	c.253G>A	c.(253-255)GAT>AAT	p.D85N		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	85	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						TTCCTGATATCGTGAAGGCAG	0.597													11	55					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149264	34149264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:34149264C>T	uc004ddg.2	-	1	1165	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	378										ovary(4)|central_nervous_system(1)	5						TTGGAAGGCTCCGCGTGGAGA	0.637													10	38					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149363	34149363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:34149363G>A	uc004ddg.2	-	1	1066	c.1033C>T	c.(1033-1035)CGT>TGT	p.R345C		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	345										ovary(4)|central_nervous_system(1)	5						GACCCCCGACGAGTCTTGGAA	0.667													4	23					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149924	34149924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:34149924C>T	uc004ddg.2	-	1	505	c.472G>A	c.(472-474)GAG>AAG	p.E158K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	158										ovary(4)|central_nervous_system(1)	5						TCCTCCAGCTCCCTCTCAGGA	0.547													4	24					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35944284	35944284	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:35944284G>T	uc004ddj.2	+	2	459	c.400G>T	c.(400-402)GGG>TGG	p.G134W	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	134										large_intestine(1)|lung(1)|ovary(1)	3						TCCTCTAATTGGGTATGTAAT	0.313													4	18					2.7689e-08	2.79726e-08	1	1	0
FAM47C	442444	broad.mit.edu	37	X	37026697	37026697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:37026697C>T	uc004ddl.1	+	1	228	c.214C>T	c.(214-216)CGC>TGC	p.R72C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	72										ovary(3)	3						GCTTGTTTGTCGCCGTGACGA	0.532													9	46					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027582	37027582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:37027582C>T	uc004ddl.1	+	1	1113	c.1099C>T	c.(1099-1101)CGC>TGC	p.R367C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	367										ovary(3)	3						ATCTCCTCTCCGCCAGCTGCC	0.637													10	67					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37029310	37029310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:37029310C>T	uc004ddl.1	+	1	2841	c.2827C>T	c.(2827-2829)CTC>TTC	p.L943F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	943										ovary(3)	3						AGCATGGTACCTCAAGCCTAA	0.448													22	75					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37029326	37029326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:37029326G>A	uc004ddl.1	+	1	2857	c.2843G>A	c.(2842-2844)GGG>GAG	p.G948E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	948										ovary(3)	3						CCTAAGTTGGGGAAAAAGCTA	0.458													19	73					0	0	1	0	0
XK	7504	broad.mit.edu	37	X	37587601	37587601	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:37587601G>A	uc004ddq.2	+	3	1303	c.1221G>A	c.(1219-1221)CCG>CCA	p.P407P		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	407	Cytoplasmic (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				CCTGTGAGCCGATAGGAAAGG	0.473													5	23					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49071670	49071670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:49071670G>A	uc004dnb.2	-	29	3568	c.3506C>T	c.(3505-3507)CCA>CTA	p.P1169L	CACNA1F_uc010nip.2_Missense_Mutation_p.P1158L	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1169	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	ACGGCGGAGTGGCTGGGCCTT	0.577													6	23					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49958711	49958711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:49958711G>A	uc004dow.1	-	5	777	c.653C>T	c.(652-654)TCC>TTC	p.S218F	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.S40F|AKAP4_uc004dou.1_Missense_Mutation_p.S209F	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	218					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					GACGTAGAAGGAAAGGTCATC	0.438													11	64					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50350551	50350551	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:50350551A>G	uc004dpe.2	-	6	3617	c.3591T>C	c.(3589-3591)GGT>GGC	p.G1197G	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1197					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CACTTTGTGAACCCTGTCTCG	0.537													4	37					0	0	1	0	0
WNK3	65267	broad.mit.edu	37	X	54337720	54337720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:54337720C>T	uc004dtd.1	-	3	981	c.542G>A	c.(541-543)CGA>CAA	p.R181Q	WNK3_uc004dtc.1_Missense_Mutation_p.R181Q	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	181	Protein kinase.				intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						GGTTAACTTTCGGTCCTGAAA	0.378													4	21					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54785277	54785277	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:54785277G>A	uc004dtj.2	-	8	1260	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	410	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						CATTGGAGAGGATCACACTGG	0.627													7	34					0	0	1	0	0
TRO	7216	broad.mit.edu	37	X	54955730	54955730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:54955730G>A	uc004dtq.2	+	12	2680	c.2573G>A	c.(2572-2574)GGC>GAC	p.G858D	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.G389D|TRO_uc004dtw.2_Missense_Mutation_p.G461D|TRO_uc004dtx.2_Missense_Mutation_p.G241D	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	858	62 X 10 AA approximate tandem repeats.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						ACCACGGCTGGCTTTAGTGGT	0.572													4	20					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65409615	65409615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:65409615G>A	uc011moz.1	+	6	967	c.907G>A	c.(907-909)GAA>AAA	p.E303K	HEPH_uc004dwn.2_Missense_Mutation_p.E303K|HEPH_uc004dwo.2_Missense_Mutation_p.E33K|HEPH_uc010nkr.2_Missense_Mutation_p.E303K|HEPH_uc011mpa.1_Missense_Mutation_p.E303K	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	300	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CATGGGCAATGAAATTGATGT	0.468													3	35					0	0	1	0	0
FAM155B	27112	broad.mit.edu	37	X	68748968	68748968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:68748968G>A	uc004dxk.2	+	2	1042	c.994G>A	c.(994-996)GAA>AAA	p.E332K		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	332						integral to membrane				ovary(1)|breast(1)	2						CGACAATGAGGAAATGGTGTA	0.617													4	13					0	0	1	0	0
SLC7A3	84889	broad.mit.edu	37	X	70147388	70147388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:70147388G>A	uc004dyn.2	-	7	1287	c.1129C>T	c.(1129-1131)CAC>TAC	p.H377Y	SLC7A3_uc004dyo.2_Missense_Mutation_p.H377Y	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	377	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GTGCCGGTGTGGATCCGAGCA	0.567													4	14					0	0	1	0	0
MED12	9968	broad.mit.edu	37	X	70356760	70356760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:70356760C>T	uc004dyy.2	+	38	5631	c.5432C>T	c.(5431-5433)CCT>CTT	p.P1811L	MED12_uc011mpq.1_Missense_Mutation_p.P1811L|MED12_uc004dyz.2_Missense_Mutation_p.P1811L|MED12_uc004dza.2_Missense_Mutation_p.P1658L|MED12_uc010nla.2_Missense_Mutation_p.P437L	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1811	Interaction with CTNNB1 and GLI3.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CGGAGCGGCCCTTATGGTGTG	0.587													11	42					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70775855	70775855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:70775855C>T	uc004eaa.1	+	8	1193	c.976C>T	c.(976-978)CAT>TAT	p.H326Y	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.H316Y|OGT_uc004eac.2_Missense_Mutation_p.H187Y|OGT_uc004ead.2_5'UTR	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	326	TPR 8.				cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					GTGTCCCACCCATGCAGACTC	0.408													17	90					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72432951	72432951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:72432951G>A	uc004ebi.2	-	1	1734	c.1378C>T	c.(1378-1380)CGT>TGT	p.R460C	NAP1L2_uc011mqj.1_Missense_Mutation_p.R318C	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	460					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					CTGCTCTAACGATCAATGTCT	0.348													5	19					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433431	72433431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:72433431C>T	uc004ebi.2	-	1	1254	c.898G>A	c.(898-900)GAG>AAG	p.E300K	NAP1L2_uc011mqj.1_Missense_Mutation_p.E158K	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	300					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					GTCAACAACTCATTTTTGAAA	0.413													7	50					0	0	1	0	0
CDX4	1046	broad.mit.edu	37	X	72673412	72673412	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:72673412C>T	uc011mqk.1	+	2	562	c.562C>T	c.(562-564)CTG>TTG	p.L188L		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	188	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					AAGATTGGAGCTGGAAAAGGA	0.403													4	10					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046120	73046120	+	RNA	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:73046120C>T	uc004ebn.2	+	1		c.34081C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TCTTCTCAGTCTAGGGCTTCT	0.413													11	19					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961673	73961673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:73961673C>T	uc004eby.2	-	3	3336	c.2719G>A	c.(2719-2721)GAG>AAG	p.E907K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	907					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GGGGCTATCTCCCTTGAGACT	0.443													3	12					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963707	73963707	+	Missense_Mutation	SNP	C	T	T	rs139459124		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:73963707C>T	uc004eby.2	-	3	1302	c.685G>A	c.(685-687)GAT>AAT	p.D229N		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	229					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGAGCCGGATCCTCCAAGTCA	0.478													14	69					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75650188	75650188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:75650188G>A	uc004ecm.1	+	1	2072	c.1865G>A	c.(1864-1866)GGG>GAG	p.G622E		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	622	MAGE 1.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						TCCATTTTTGGGAACCCAAAG	0.488													5	23					0	0	1	0	0
P2RY10	27334	broad.mit.edu	37	X	78216491	78216491	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:78216491C>T	uc004ede.2	+	4	843	c.474C>T	c.(472-474)ATC>ATT	p.I158I	P2RY10_uc004edf.2_Silent_p.I158I	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	158	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						CCATCTGGATCGTTGTGGGGA	0.493													5	25					0	0	1	0	0
P2RY10	27334	broad.mit.edu	37	X	78217001	78217001	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:78217001C>T	uc004ede.2	+	4	1353	c.984C>T	c.(982-984)CTC>CTT	p.L328L	P2RY10_uc004edf.2_Silent_p.L328L	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	328	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GCTCCCGCCTCATGAGCAAGG	0.438													10	53					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79932528	79932528	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:79932528T>C	uc004edt.2	-	41	5252	c.4989A>G	c.(4987-4989)AGA>AGG	p.R1663R	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Silent_p.R1259R|BRWD3_uc004edp.2_Silent_p.R1492R|BRWD3_uc004edq.2_Silent_p.R1259R|BRWD3_uc010nmj.1_Silent_p.R1259R|BRWD3_uc004edr.2_Silent_p.R1333R|BRWD3_uc004eds.2_Silent_p.R1259R|BRWD3_uc004edu.2_Silent_p.R1333R|BRWD3_uc004edv.2_Silent_p.R1259R|BRWD3_uc004edw.2_Silent_p.R1259R|BRWD3_uc004edx.2_Silent_p.R1259R|BRWD3_uc004edy.2_Silent_p.R1259R|BRWD3_uc004edz.2_Silent_p.R1333R|BRWD3_uc004eea.2_Silent_p.R1333R|BRWD3_uc004eeb.2_Silent_p.R1259R|uc004edn.1_5'Flank	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1663	Gly-rich.									ovary(4)	4						TCTTCCAATTTCTTTTTCCAT	0.338													15	79					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84526505	84526505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:84526505G>A	uc004eeo.2	+	9	2304	c.1957G>A	c.(1957-1959)GAC>AAC	p.D653N	ZNF711_uc004eep.2_Missense_Mutation_p.D653N|ZNF711_uc004eeq.2_Missense_Mutation_p.D699N|ZNF711_uc011mqy.1_Missense_Mutation_p.D252N	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	653	C2H2-type 9.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CAGGCACTGTGACTTTAAAAC	0.393													6	24					0	0	1	0	0
TAF7L	54457	broad.mit.edu	37	X	100547999	100547999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:100547999G>A	uc004ehb.2	-	1	47	c.35C>T	c.(34-36)TCA>TTA	p.S12L	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						ATCATTTTCTGAAGAAATGGG	0.498													42	240					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102334163	102334163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:102334163C>T	uc004eju.2	-	16	1435	c.1364G>A	c.(1363-1365)GGG>GAG	p.G455E	NXF3_uc010noi.1_Missense_Mutation_p.G305E	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	455	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CTTGAACACCCCGTTGACAGA	0.587													34	191					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102334967	102334967	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:102334967C>G	uc004eju.2	-	12	1097	c.1026G>C	c.(1024-1026)AAG>AAC	p.K342N	NXF3_uc010noi.1_Missense_Mutation_p.K192N	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	342						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GGACCAGATTCTTCAACATCT	0.502													38	124					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102338566	102338566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:102338566C>T	uc004eju.2	-	4	477	c.406G>A	c.(406-408)GAA>AAA	p.E136K	NXF3_uc010noi.1_5'UTR|NXF3_uc011mrw.1_Missense_Mutation_p.E136K|NXF3_uc011mrx.1_Missense_Mutation_p.E47K	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	136	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						ACACTGCATTCATTCTGAATC	0.463													18	85					0	0	1	0	0
GLRA4	441509	broad.mit.edu	37	X	102962307	102962307	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:102962307C>A	uc011mse.1	-	9	1640	c.1219G>T	c.(1219-1221)GAA>TAA	p.E407*		NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	407	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GTTTCTCCTTCCCTTAGAAGA	0.527													14	34					1.01871e-10	1.03069e-10	1	1	0
ESX1	80712	broad.mit.edu	37	X	103499527	103499528	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:103499527_103499528CC>TT	uc004ely.2	-	1	61_62	c.3_4GG>AA	c.(1-6)ATGGAG>ATAAAG	p.1_2ME>IK		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	1_2					negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGAAGAGACTCCATGCTTCAAG	0.589													32	143					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105139435	105139435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:105139435C>T	uc004emd.2	+	7	802	c.499C>T	c.(499-501)CAC>TAC	p.H167Y	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	167	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GGGCTTAGCTCACCTTCACGC	0.313										HNSCC(51;0.14)			3	26					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449724	105449724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:105449724G>A	uc004emf.1	+	4	948	c.299G>A	c.(298-300)AGA>AAA	p.R100K	MUM1L1_uc004emg.1_Missense_Mutation_p.R100K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	100										ovary(2)|pancreas(1)|skin(1)	4						CTGAATGAGAGAACAAATTTG	0.438													3	27					0	0	1	0	0
CXorf57	55086	broad.mit.edu	37	X	105876359	105876359	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:105876359G>A	uc004emi.3	+	6	1332	c.1181_splice	c.e6-1	p.E394_splice	CXorf57_uc004emj.3_Splice_Site_p.E394_splice|CXorf57_uc004emh.2_Splice_Site_p.E394_splice	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086											ovary(1)|lung(1)|breast(1)	3						TATCCATATAGAAAACCGTGA	0.303													6	32					0	0	1	0	0
IRS4	8471	broad.mit.edu	37	X	107977073	107977073	+	Silent	SNP	T	C	C			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:107977073T>C	uc004eoc.2	-	1	2535	c.2502A>G	c.(2500-2502)GGA>GGG	p.G834G		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	834						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CCAGGAACTTTCCAGGTAACA	0.493													36	159					0	0	1	0	0
PAK3	5063	broad.mit.edu	37	X	110439807	110439807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:110439807G>A	uc004epa.2	+	13	1418	c.1391G>A	c.(1390-1392)GGA>GAA	p.G464E	PAK3_uc010npt.1_Missense_Mutation_p.G449E|PAK3_uc010npu.1_Missense_Mutation_p.G449E|PAK3_uc004eoy.1_Missense_Mutation_p.G204E|PAK3_uc004eoz.2_Missense_Mutation_p.G449E|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.G485E|PAK3_uc010npw.1_Missense_Mutation_p.G470E	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	464	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						TGGTCTCTTGGAATTATGGCA	0.443										TSP Lung(19;0.15)			7	31					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111155743	111155743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:111155743C>T	uc004epl.1	-	3	1595	c.676G>A	c.(676-678)GAG>AAG	p.E226K	TRPC5_uc004epm.1_Missense_Mutation_p.E226K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	226	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TCCTTGAGCTCCCAGCCCAGA	0.552													29	140					0	0	1	0	0
LHFPL1	340596	broad.mit.edu	37	X	111914427	111914427	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:111914427C>T	uc004epq.2	-	2	525	c.192G>A	c.(190-192)GTG>GTA	p.V64V	LHFPL1_uc004epp.2_Silent_p.V87V|LHFPL1_uc010nqa.2_Intron|LHFPL1_uc010nqb.2_Silent_p.V64V	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	64						integral to membrane					0						CACATTCTTCCACCATGATCA	0.587													7	74					0	0	1	0	0
IL13RA2	3598	broad.mit.edu	37	X	114249075	114249075	+	Silent	SNP	C	T	T	rs143961112	byFrequency	TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:114249075C>T	uc004epx.2	-	4	434	c.309G>A	c.(307-309)GCG>GCA	p.A103A	IL13RA2_uc010nqd.1_Silent_p.A103A	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	103	Extracellular (Potential).|Fibronectin type-III 1.					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						TGTGTATCTTCGCTTCAATGC	0.373													5	50					0	0	1	0	0
LUZP4	51213	broad.mit.edu	37	X	114540849	114540849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:114540849G>A	uc004eqa.2	+	4	456	c.422G>A	c.(421-423)GGA>GAA	p.G141E	LUZP4_uc004eqb.2_Missense_Mutation_p.G59E	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	141						nucleus				ovary(2)	2						CAATCAGAAGGAAATCCGGAC	0.458													7	29					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123518537	123518537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:123518537C>T	uc004euj.2	-	29	6287	c.6223G>A	c.(6223-6225)GAG>AAG	p.E2075K	ODZ1_uc011muj.1_Missense_Mutation_p.E2081K|ODZ1_uc010nqy.2_Missense_Mutation_p.E2082K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2075	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCAAACTGCTCTGTTCTGCCA	0.383													4	51					0	0	1	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299437	125299437	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:125299437C>T	uc004euk.1	-	1	498	c.471G>A	c.(469-471)CTG>CTA	p.L157L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	157	WD 1.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						TGGAGGGATTCAGCTCGATGG	0.687													5	70					0	0	1	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299509	125299509	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:125299509G>A	uc004euk.1	-	1	426	c.399C>T	c.(397-399)ATC>ATT	p.I133I		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	133										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GCATGAGGGGGATGCGCGTGA	0.642													11	63					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685746	125685746	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:125685746C>T	uc004eul.2	-	1	1097	c.846G>A	c.(844-846)TTG>TTA	p.L282L		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	282	WD 3.									skin(3)|ovary(1)	4						AGTAGCCGTCCAAGGACACCG	0.622													8	32					0	0	1	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128880613	128880613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:128880613C>T	uc004eut.1	+	6	690	c.446C>T	c.(445-447)CCT>CTT	p.P149L	XPNPEP2_uc011mum.1_Missense_Mutation_p.P149L	NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	149					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						ACCGAGATTCCTGCTGGAGGG	0.537													29	121					0	0	1	0	0
GPR119	139760	broad.mit.edu	37	X	129518964	129518964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:129518964C>T	uc011muv.1	-	1	458	c.458G>A	c.(457-459)GGG>GAG	p.G153E		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	153	Extracellular (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						GCTGCACTGCCCTTTGTAGGC	0.557													8	33					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130219008	130219008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:130219008G>A	uc004evz.2	+	7	1270	c.925G>A	c.(925-927)GAT>AAT	p.D309N	ARHGAP36_uc004ewa.2_Missense_Mutation_p.D297N|ARHGAP36_uc004ewb.2_Missense_Mutation_p.D278N|ARHGAP36_uc004ewc.2_Missense_Mutation_p.D173N	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	309	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GCTGCCAGATGATCTGTACAT	0.488													17	64					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130415820	130415820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:130415820C>T	uc004ewd.2	-	8	1583	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	IGSF1_uc004ewe.3_Missense_Mutation_p.E438K|IGSF1_uc004ewf.2_Missense_Mutation_p.E429K	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	449	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						AGAGAAAATTCCAGTACTGGA	0.473													4	24					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	132670237	132670237	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:132670237T>G	uc004exe.1	-	8	1848	c.1658A>C	c.(1657-1659)CAC>CCC	p.H553P	GPC3_uc004exd.1_Missense_Mutation_p.H425P|GPC3_uc010nrn.1_Missense_Mutation_p.H576P|GPC3_uc011mvh.1_Missense_Mutation_p.H537P|GPC3_uc010nro.1_Missense_Mutation_p.H499P	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	553						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CCCGAGGTTGTGAAAGGTGCT	0.537			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				7	32					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134986725	134986725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:134986725C>T	uc004ezh.2	+	4	477	c.310C>T	c.(310-312)CCT>TCT	p.P104S	SAGE1_uc010nry.1_Intron|SAGE1_uc011mvv.1_Missense_Mutation_p.P104S	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	104										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TCCACCATGGCCTGGTAATAT	0.428													10	53					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134988271	134988271	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:134988271G>A	uc004ezh.2	+	6	710	c.543G>A	c.(541-543)GGG>GGA	p.G181G	SAGE1_uc010nry.1_Silent_p.G150G|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	181										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTCCCACAGGGCTTATTAATA	0.433													15	63					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134993770	134993770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:134993770G>A	uc004ezh.2	+	18	2346	c.2179G>A	c.(2179-2181)GAG>AAG	p.E727K	SAGE1_uc010nry.1_Missense_Mutation_p.E696K|SAGE1_uc011mvv.1_Missense_Mutation_p.E351K	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	727										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CCAGGAGGAGGAGATGGAAAA	0.428													10	77					0	0	1	0	0
MAP7D3	79649	broad.mit.edu	37	X	135309544	135309544	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:135309544G>A	uc004ezt.2	-	12	2024	c.1933C>T	c.(1933-1935)CAA>TAA	p.Q645*	MAP7D3_uc004ezs.2_Nonsense_Mutation_p.Q609*|MAP7D3_uc011mwc.1_Nonsense_Mutation_p.Q627*|MAP7D3_uc010nsa.1_Nonsense_Mutation_p.Q603*	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	645						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					TCTTCTGCTTGGCCTCCAACT	0.403													23	50					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135429843	135429843	+	Silent	SNP	A	G	G			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:135429843A>G	uc004ezu.1	+	6	4269	c.3978A>G	c.(3976-3978)GGA>GGG	p.G1326G	GPR112_uc010nsb.1_Silent_p.G1121G|GPR112_uc010nsc.1_Silent_p.G1093G	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1326	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CCTCTGATGGAAATTTGGCTT	0.443													3	40					0	0	1	0	0
ATP11C	286410	broad.mit.edu	37	X	138878534	138878534	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:138878534G>A	uc004faz.2	-	12	1212	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Silent_p.F371F	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	371	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AGGAGCCCAAGAATTTCTGCA	0.368													3	30					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993283	140993283	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:140993283C>T	uc004fbt.2	+	4	379	c.93C>T	c.(91-93)TCC>TCT	p.S31S	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	31							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGGACTCCCAGTCTCCTC	0.582										HNSCC(15;0.026)			12	71					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994604	140994604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:140994604G>A	uc004fbt.2	+	4	1700	c.1414G>A	c.(1414-1416)GGT>AGT	p.G472S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	472							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TACTTTTGAGGGTTTTCCCCA	0.488										HNSCC(15;0.026)			16	117					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995048	140995048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:140995048G>A	uc004fbt.2	+	4	2144	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	620							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGGGGGAGGAATTCCAGTC	0.562										HNSCC(15;0.026)			34	148					0	0	1	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596669	142596669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:142596669G>A	uc004fbw.2	-	2	489	c.401C>T	c.(400-402)TCT>TTT	p.S134F		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	134								p.S134C(1)		ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GTCCTGTGAAGATCCTTCAGA	0.443													4	42					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717256	142717256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:142717256C>T	uc004fbx.2	-	2	2045	c.1669G>A	c.(1669-1671)GAA>AAA	p.E557K	SLITRK4_uc004fby.2_Missense_Mutation_p.E557K	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	557	Extracellular (Potential).|LRRCT 2.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATTTCAGTTCTTTCACAACA	0.448													14	62					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150349133	150349133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150349133G>A	uc010ntg.1	+	2	1213	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	uc004fes.1_5'Flank	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	360	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTGTGGAGGAAACCCCGAT	0.632													20	111					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150349697	150349697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150349697C>T	uc010ntg.1	+	2	1777	c.1642C>T	c.(1642-1644)CCT>TCT	p.P548S		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	548	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCCCGAGATCCCTGCCATTGC	0.647													12	49					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150828252	150828252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150828252C>T	uc004fev.3	+	10	1117	c.785C>T	c.(784-786)TCT>TTT	p.S262F		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	262						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGTAGATTCTGATTCAACT	0.373													7	45					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150828306	150828306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150828306C>T	uc004fev.3	+	10	1171	c.839C>T	c.(838-840)CCA>CTA	p.P280L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	280						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGAATCTCCAGGTAGGTAC	0.373													5	43					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150832797	150832797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150832797G>A	uc004fev.3	+	11	1380	c.1048G>A	c.(1048-1050)GGG>AGG	p.G350R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	350						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGTGGACCTGGGGGCTGCTGG	0.567													3	9					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150839561	150839561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150839561G>A	uc004fev.3	+	12	1455	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	375	Potential.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGAACTGGAACTGATGAA	0.443													20	124					0	0	1	0	0
CNGA2	1260	broad.mit.edu	37	X	150912370	150912370	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:150912370G>A	uc004fey.1	+	7	1619	c.1395G>A	c.(1393-1395)GAG>GAA	p.E465E		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	465	Helical; Name=H6; (Potential).|cAMP (By similarity).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTGGTAGAGCTGGTACTGA	0.408													17	61					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151124224	151124224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:151124224G>A	uc004ffi.2	-	7	947	c.893C>T	c.(892-894)TCC>TTC	p.S298F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	298	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GATCCAAAAGGAAACCCAGGA	0.512													11	68					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870060	151870060	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:151870060C>T	uc004ffq.1	+	3	944	c.750C>T	c.(748-750)TTC>TTT	p.F250F	MAGEA6_uc004ffr.1_Silent_p.F250F|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	250	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAATATTTCGTGCAGGAAA	0.537													32	108					0	0	1	0	0
FAM58A	92002	broad.mit.edu	37	X	152860004	152860004	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:152860004C>T	uc010nug.2	-	2	346	c.243_splice	c.e2+1	p.K81_splice				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;						regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGTATGTACCTTGTGTGGA	0.542													18	66					0	0	1	0	0
SSR4	6748	broad.mit.edu	37	X	153062007	153062007	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:153062007G>A	uc004fiw.2	+	2	235	c.186G>A	c.(184-186)CAG>CAA	p.Q62Q	IDH3G_uc004fio.2_5'Flank|IDH3G_uc004fip.2_5'Flank|IDH3G_uc004fiq.2_5'Flank|IDH3G_uc010num.2_5'Flank|IDH3G_uc004fir.2_5'Flank|IDH3G_uc004fit.1_5'Flank|IDH3G_uc004fis.2_5'Flank|SSR4_uc004fiv.2_Silent_p.Q73Q	NM_006280	NP_006271	P51571	SSRD_HUMAN	signal sequence receptor, delta precursor	62	Lumenal (Potential).				intracellular protein transport	integral to membrane|Sec61 translocon complex	calcium ion binding|protein binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ACAGGGTCCAGGTGAGACAGT	0.547													27	89					0	0	1	0	0
PDZD4	57595	broad.mit.edu	37	X	153069133	153069133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:153069133G>A	uc004fiz.1	-	8	2235	c.1985C>T	c.(1984-1986)ACC>ATC	p.T662I	PDZD4_uc004fiy.1_Missense_Mutation_p.T587I|PDZD4_uc004fix.2_Missense_Mutation_p.T566I|PDZD4_uc004fja.1_Missense_Mutation_p.T668I|PDZD4_uc011mze.1_Missense_Mutation_p.T553I	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	662						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTCGTCGTCGGTCGTCATACC	0.682													14	47					0	0	1	0	0
GDI1	2664	broad.mit.edu	37	X	153670591	153670591	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:153670591C>T	uc004fli.3	+	9	1467	c.1125C>T	c.(1123-1125)CCC>CCT	p.P375P	GDI1_uc004flj.2_Silent_p.P40P|FAM50A_uc004fll.3_5'Flank	NM_001493	NP_001484	P31150	GDIA_HUMAN	GDP dissociation inhibitor 1	375					protein transport|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|midbody	GTPase activator activity|protein binding				0	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGTTGGAGCCCATTGACCAGA	0.627													12	76					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154185423	154185423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:154185423G>A	uc004fmt.2	-	11	1732	c.1561C>T	c.(1561-1563)CCA>TCA	p.P521S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	521	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGCAGAATTGGAAAATCCTTC	0.383													18	60					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154197700	154197700	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:154197700C>T	uc004fmt.2	-	7	1086	c.915G>A	c.(913-915)TTG>TTA	p.L305L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	305	Plastocyanin-like 2.|F5/8 type A 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GCGAGATTTCCAAGGACGCCT	0.448													8	63					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154250708	154250708	+	Silent	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:154250708G>A	uc004fmt.2	-	1	291	c.120C>T	c.(118-120)CTC>CTT	p.L40L	F8_uc011mzx.1_Intron	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	40	Plastocyanin-like 1.|F5/8 type A 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GCAGCTCACCGAGATCACTTT	0.522													39	159					0	0	1	0	0
CLIC2	1193	broad.mit.edu	37	X	154508514	154508514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:154508514G>A	uc004fnf.2	-	5	756	c.506C>T	c.(505-507)TCC>TTC	p.S169F	CLIC2_uc010nvj.1_Missense_Mutation_p.S187F	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	169	GST C-terminal.|Foot loop.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TAGTCTTCTGGAAACTGGGGG	0.433													7	31					0	0	1	0	0
SPRY3	10251	broad.mit.edu	37	X	155003537	155003537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrX:155003537G>A	uc004fnq.1	+	2	458	c.4G>A	c.(4-6)GAT>AAT	p.D2N	SPRY3_uc010nvl.1_Missense_Mutation_p.D2N	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	2					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AGGCAAAATGGATGCTGCGGT	0.468													17	187					0	0	1	0	0
PRKY	5616	broad.mit.edu	37	Y	7194115	7194115	+	Silent	SNP	C	T	T			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chrY:7194115C>T	uc004fre.2	+	3	844	c.504C>T	c.(502-504)ATC>ATT	p.I168I		NM_002760	NP_002751			RecName: Full=Serine/threonine-protein kinase PRKX;          EC=2.7.11.1; AltName: Full=Protein kinase PKX1;												0						CCAAGGAGATCGTCTACAGGG	0.547													14	43					0	0	1	0	0
TCEA3	6920	broad.mit.edu	37	1	23724379	23724379	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr1:23724379delG	uc001bgx.1	-	6	648	c.513delC	c.(511-513)GCCfs	p.A171fs	TCEA3_uc009vqn.1_Frame_Shift_Del_p.A150fs	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	171	Ser-rich.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		ACATGGAAGAGGCAAACGTGG	0.542													7	88	---	---	---	---					
TCERG1L	256536	broad.mit.edu	37	10	133109585	133109587	+	In_Frame_Del	DEL	GCG	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr10:133109585_133109587delGCG	uc001lkp.2	-	1	398_400	c.312_314delCGC	c.(310-315)GCCGCG>GCG	p.104_105AA>A		NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	104_105	Poly-Ala.									large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		gaaggggtgcgcggcggcggcgg	0.315													2	4	---	---	---	---					
KRT2	3849	broad.mit.edu	37	12	53045603	53045604	+	In_Frame_Ins	INS	-	AAGCCGCTGCCACCTCCA	AAGCCGCTGCCACCTCCA	rs35124031		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr12:53045603_53045604insAAGCCGCTGCCACCTCCA	uc001sat.2	-	1	356_357	c.323_324insTGGAGGTGGCAGCGGCTT	c.(322-324)TTC>TTTGGAGGTGGCAGCGGCTTC	p.108_108F>FGGGSGF		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	108	Head.			F -> FGGGSGF (in Ref. 1; AAC83410 and 2; AAB81946).	keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		caccaccactgaagccgctgcc	0.069													3	5	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40631782	40631782	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr15:40631782delC	uc001zlh.3	-	3	310	c.294delG	c.(292-294)GGGfs	p.G98fs	C15orf52_uc001zli.1_5'UTR|C15orf52_uc010ucn.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	98										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		TCACAGCCATCCCCCCCTGCT	0.647													7	244	---	---	---	---					
RTTN	25914	broad.mit.edu	37	18	67844040	67844040	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr18:67844040delG	uc002lkp.2	-	11	1415	c.1347delC	c.(1345-1347)ACCfs	p.T449fs	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Frame_Shift_Del_p.T449fs	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	449							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				GGTAGCACATGGTTTCTCCAA	0.438													16	198	---	---	---	---					
NCOA5	57727	broad.mit.edu	37	20	44691334	44691334	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr20:44691334delT	uc002xrd.2	-	7	1873	c.1345delA	c.(1345-1347)AGCfs	p.S449fs	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Frame_Shift_Del_p.S449fs	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				GATGCAGAGCTGCTATTGGCC	0.552													28	353	---	---	---	---					
UGT2A3	79799	broad.mit.edu	37	4	69796888	69796888	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr4:69796888delG	uc003hef.2	-	4	1100	c.1069delC	c.(1069-1071)CAGfs	p.Q357fs	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	357	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AGATCATTCTGGGGTATCCAA	0.368													10	75	---	---	---	---					
GABRR2	2570	broad.mit.edu	37	6	89975427	89975429	+	In_Frame_Del	DEL	AAG	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr6:89975427_89975429delAAG	uc003pnb.2	-	7	875_877	c.867_869delCTT	c.(865-870)TTCTTG>TTG	p.F289del	GABRR2_uc011dzx.1_In_Frame_Del_p.F165del	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	289	Helical; (Potential).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		TGTTTGGAGCAAGAAGAAGAAGA	0.517													7	139	---	---	---	---					
TRIM4	89122	broad.mit.edu	37	7	99506323	99506325	+	In_Frame_Del	DEL	TCT	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:99506323_99506325delTCT	uc003usd.2	-	4	808_810	c.678_680delAGA	c.(676-681)GAAGAG>GAG	p.226_227EE>E	TRIM4_uc003use.2_In_Frame_Del_p.200_201EE>E|TRIM4_uc011kjc.1_In_Frame_Del_p.56_57EE>E|TRIM4_uc003usf.2_In_Frame_Del_p.200_201EE>E	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	226_227	Potential.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				CTTCTTCGTCTCTTCTTCTTCTT	0.443													7	92	---	---	---	---					
FOXP2	93986	broad.mit.edu	37	7	114271580	114271582	+	Splice_Site	DEL	CAG	-	-	rs111544687		TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:114271580_114271582delCAG	uc003vhb.2	+	6	972	c.598_splice	c.e6-1	p.Q200_splice	FOXP2_uc003vgu.2_Splice_Site|FOXP2_uc003vgz.2_Splice_Site_p.Q225_splice|FOXP2_uc003vha.2_Splice_Site_p.Q108_splice|FOXP2_uc011kmu.1_Splice_Site_p.Q217_splice|FOXP2_uc011kmv.1_Intron|FOXP2_uc010ljz.1_Splice_Site_p.Q108_splice|FOXP2_uc003vgt.1_Splice_Site|FOXP2_uc003vgv.1_Splice_Site_p.Q200_splice|FOXP2_uc003vgx.2_Splice_Site_p.Q200_splice|FOXP2_uc003vhd.2_Splice_Site_p.Q200_splice|FOXP2_uc003vhc.2_Splice_Site_p.Q225_splice	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I						camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						TTTCTGATACcagcagcagcagc	0.414													2	4	---	---	---	---					
PRKAG2	51422	broad.mit.edu	37	7	151261265	151261266	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr7:151261265_151261266delTC	uc003wkk.2	-	14	2093_2094	c.1482_1483delGA	c.(1480-1485)GTGACCfs	p.V494fs	PRKAG2_uc003wki.2_Frame_Shift_Del_p.V253fs|PRKAG2_uc011kvl.1_Frame_Shift_Del_p.V369fs|PRKAG2_uc003wkj.2_Frame_Shift_Del_p.V450fs|PRKAG2_uc003wkl.2_Frame_Shift_Del_p.V42fs	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	494_495					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		AGGGCCTGGGTCACCGTGATAT	0.401													30	231	---	---	---	---					
PRKDC	5591	broad.mit.edu	37	8	48866910	48866910	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JD-06A-11D-A20D-08	TCGA-EE-A3JD-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdc436cf-a5db-4b03-8d89-4104d381fa07	1b1c73a4-cd06-4316-957c-e37b5fc39815	g.chr8:48866910delT	uc003xqi.2	-	5	553	c.496delA	c.(496-498)ATAfs	p.I166fs	PRKDC_uc003xqj.2_Frame_Shift_Del_p.I166fs|PRKDC_uc011ldh.1_Frame_Shift_Del_p.I166fs	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	166					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTATCTGGTATTTTTTTTTTC	0.264								NHEJ					3	6	---	---	---	---					
