Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	978980	978980	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:978980C>T	uc001ack.1	+	9	1716	c.1666C>T	c.(1666-1668)CCC>TCC	p.P556S		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	556	Kazal-like 6.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CTGCGTGTGCCCCTCTGAATG	0.677													17	46					0	0	1	0	0
SKI	6497	broad.mit.edu	37	1	2237522	2237522	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:2237522A>G	uc001aja.3	+	6	1903	c.1831A>G	c.(1831-1833)AAC>GAC	p.N611D		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	611	Potential.				anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		GGCCAAGCGTAACCTGCGGAA	0.667													6	10					0	0	1	0	0
MORN1	79906	broad.mit.edu	37	1	2255563	2255563	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:2255563C>T	uc001ajb.1	-	13	1291	c.1270G>A	c.(1270-1272)GAG>AAG	p.E424K		NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	424										ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		GCCTGCTCCTCCGTGGCTCTC	0.677													3	5					0	0	1	0	0
MORN1	79906	broad.mit.edu	37	1	2268246	2268246	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:2268246C>T	uc001ajb.1	-	11	1101	c.1080G>A	c.(1078-1080)GTG>GTA	p.V360V	MORN1_uc009vld.2_Silent_p.V336V	NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	360										ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		AGCCCTGCTCCACTCGCTGAC	0.657													10	19					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2421251	2421251	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:2421251C>T	uc001aji.1	+	10	1734	c.1460C>T	c.(1459-1461)TCT>TTT	p.S487F	PLCH2_uc010nyz.1_Missense_Mutation_p.S275F|PLCH2_uc009vle.1_Missense_Mutation_p.S275F|PLCH2_uc001ajj.1_Missense_Mutation_p.S275F|PLCH2_uc001ajk.1_Missense_Mutation_p.S275F	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	487					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		GGCGAGGTGTCTGATGAGGAC	0.612													31	55					0	0	1	0	0
PLCH2	9651	broad.mit.edu	37	1	2428367	2428367	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:2428367C>T	uc001aji.1	+	15	2308	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	PLCH2_uc010nyz.1_Silent_p.L466L|PLCH2_uc009vle.1_Silent_p.L466L|PLCH2_uc001ajj.1_Silent_p.L466L|PLCH2_uc001ajk.1_Silent_p.L466L|PLCH2_uc001ajl.1_5'Flank	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	678	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		AGCAGCAGCTCTCCCGCATCT	0.637													17	37					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6188931	6188931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:6188931C>T	uc001amb.1	-	23	3686	c.3586G>A	c.(3586-3588)GGC>AGC	p.G1196S	CHD5_uc001alz.1_Missense_Mutation_p.G53S|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1196					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCCTCCGTGCCGAACTTGAGG	0.657													10	32					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724953	7724953	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:7724953C>T	uc001aoi.2	+	9	2553	c.2346C>T	c.(2344-2346)TCC>TCT	p.S782S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	782					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		ACTTCATCTCCGTGGAGGGGG	0.637													93	178					0	0	1	0	0
TMEM201	199953	broad.mit.edu	37	1	9661428	9661428	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:9661428C>T	uc001apz.2	+	5	884	c.872C>T	c.(871-873)GCC>GTC	p.A291V	TMEM201_uc001apy.2_Missense_Mutation_p.A291V	NM_001130924	NP_001124396	Q5SNT2	TM201_HUMAN	transmembrane protein 201 isoform 1	291						integral to membrane|nuclear inner membrane					0	all_lung(157;0.222)	all_epithelial(116;2.09e-14)|Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|STAD - Stomach adenocarcinoma(132;0.00345)|READ - Rectum adenocarcinoma(331;0.0419)		GAGGCCTGGGCCTTTGGGCAG	0.682													27	62					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10240011	10240011	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:10240011C>G	uc001aqs.3	+	28	4619	c.3906C>G	c.(3904-3906)CAC>CAG	p.H1302Q	UBE4B_uc001aqr.3_Missense_Mutation_p.H1173Q|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.H757Q|UBE4B_uc001aqu.2_Missense_Mutation_p.H183Q	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1302					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		ACAGCGATCACTAAACCGTTC	0.547													21	57					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10713789	10713789	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:10713789C>T	uc001aro.2	-	11	2645	c.2325G>A	c.(2323-2325)CTG>CTA	p.L775L	CASZ1_uc001arp.1_Silent_p.L775L|CASZ1_uc009vmx.2_Silent_p.L799L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	775					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CCTGGGGCAGCAGCCCCGAGA	0.701													16	35					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907852	12907852	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:12907852C>T	uc009vno.2	-	1	386	c.291G>A	c.(289-291)GTG>GTA	p.V97V	HNRNPCL1_uc010obf.1_Silent_p.V97V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	97							nucleic acid binding|nucleotide binding				0						CTGATCGTTTCACACCTGCGT	0.493													6	87					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13936951	13936951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:13936951C>T	uc001avd.2	+	3	548	c.499C>T	c.(499-501)CAC>TAC	p.H167Y	PDPN_uc001avc.2_Missense_Mutation_p.H167Y|PDPN_uc009vob.2_Missense_Mutation_p.H49Y|PDPN_uc009voc.2_Missense_Mutation_p.H49Y|PDPN_uc001ave.2_Missense_Mutation_p.H49Y|PDPN_uc001avf.2_Missense_Mutation_p.H49Y	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	91	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		AAGCACAGTCCACGCGCAAGA	0.507													14	52					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13936994	13936994	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:13936994C>T	uc001avd.2	+	3	591	c.542C>T	c.(541-543)GCC>GTC	p.A181V	PDPN_uc001avc.2_Missense_Mutation_p.A181V|PDPN_uc009vob.2_Missense_Mutation_p.A63V|PDPN_uc009voc.2_Missense_Mutation_p.A63V|PDPN_uc001ave.2_Missense_Mutation_p.A63V|PDPN_uc001avf.2_Missense_Mutation_p.A63V	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	105	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		TCAAACGTGGCCACCAGTCAC	0.493													9	57					0	0	1	0	0
KAZ	23254	broad.mit.edu	37	1	15439002	15439002	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:15439002G>A	uc001avm.3	+	14	2409	c.2128G>A	c.(2128-2130)GAG>AAG	p.E710K	C1orf126_uc001avv.3_RNA|C1orf126_uc009voh.2_RNA|KAZ_uc001avs.3_Missense_Mutation_p.E157K	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	710					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						AGGAAAGGAGGAGAACAGCAG	0.577													5	8					0	0	1	0	0
SPATA21	374955	broad.mit.edu	37	1	16727338	16727338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:16727338C>T	uc001ayn.2	-	11	1534	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Missense_Mutation_p.E328K	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	351							calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		ACGGCCGCTTCCATCTCCTGG	0.567													46	118					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945591	16945591	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:16945591G>A	uc010ocf.1	-	4		c.566C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTCCTTCAGAGACAAGGCCTG	0.602													27	380					0	0	1	0	0
CROCC	9696	broad.mit.edu	37	1	17265526	17265526	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:17265526C>T	uc001azt.2	+	12	1566	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S	CROCC_uc009voy.1_Silent_p.S202S|CROCC_uc009voz.1_Silent_p.S262S|CROCC_uc001azu.2_5'Flank	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	499					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CGCGGCGCTCCTCGCCCGGCC	0.761													5	10					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18692116	18692116	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:18692116G>A	uc001bau.1	+	6	1323	c.940G>A	c.(940-942)GAC>AAC	p.D314N	IGSF21_uc001bav.1_Missense_Mutation_p.D135N	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	314						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCCACAGATCGACAACGAGGC	0.642													21	59					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808204	18808204	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:18808204C>T	uc001bax.2	+	1	781	c.729C>T	c.(727-729)TCC>TCT	p.S243S	KLHDC7A_uc009vpg.2_Silent_p.S25S	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	243						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCTGCCTCCGATGTTGACC	0.587													14	47					0	0	1	0	0
NBPF3	84224	broad.mit.edu	37	1	21804670	21804670	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:21804670C>T	uc001ber.2	+	9	1376	c.1026C>T	c.(1024-1026)CCC>CCT	p.P342P	NBPF3_uc001bes.2_Silent_p.P286P|NBPF3_uc009vqb.2_Silent_p.P367P|NBPF3_uc010odm.1_Silent_p.P272P	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	342	NBPF 2.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGGAAGCCCCCCAGGAGTCCT	0.502													34	103					0	0	1	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21928203	21928203	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:21928203G>A	uc001bex.2	-	20	1884	c.1626C>T	c.(1624-1626)TCC>TCT	p.S542S	RAP1GAP_uc001bev.2_Silent_p.S627S|RAP1GAP_uc001bew.2_Silent_p.S606S|RAP1GAP_uc001bey.2_Silent_p.S568S	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	542					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GCATCTCTGGGGAGCTCTGAG	0.667													12	39					0	0	1	0	0
CDC42	998	broad.mit.edu	37	1	22412947	22412947	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:22412947A>T	uc001bfq.2	+	5	486	c.194A>T	c.(193-195)GAC>GTC	p.D65V	CDC42_uc009vqg.1_Missense_Mutation_p.D65V|CDC42_uc001bfp.2_Missense_Mutation_p.D65V|CDC42_uc001bfr.2_Missense_Mutation_p.D65V|CDC42_uc010odr.1_Missense_Mutation_p.D110V|CDC42_uc010ods.1_Missense_Mutation_p.D107V|CDC42_uc009vqh.2_Missense_Mutation_p.D24V	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	65					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		GAGGATTATGACAGATTACGA	0.378													15	58					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24417382	24417382	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:24417382C>T	uc001bin.3	-	12	1500	c.1337G>A	c.(1336-1338)CGG>CAG	p.R446Q	MYOM3_uc001bim.3_Missense_Mutation_p.R103Q|MYOM3_uc001bio.2_Missense_Mutation_p.R446Q|MYOM3_uc001bip.1_Missense_Mutation_p.R103Q	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	446	Fibronectin type-III 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGCTCTCACCCGGAACCGATA	0.632													22	65					0	0	1	0	0
SLC30A2	7780	broad.mit.edu	37	1	26369133	26369133	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:26369133C>T	uc001blh.1	-	4	709	c.492G>A	c.(490-492)GAG>GAA	p.E164E	SLC30A2_uc001blg.1_Silent_p.E213E	NM_032513	NP_115902	Q9BRI3	ZNT2_HUMAN	solute carrier family 30, member 2 isoform 2	164	Cytoplasmic (Potential).				positive regulation of sequestering of zinc ion|zinc ion transport	integral to membrane|late endosome|lysosomal membrane	cation transmembrane transporter activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.09e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00614)|READ - Rectum adenocarcinoma(331;0.0649)		CGCTGGGGTTCTCCTCCTGCT	0.552													16	46					0	0	1	0	0
CCDC21	64793	broad.mit.edu	37	1	26570684	26570684	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:26570684C>T	uc001bls.1	+	3	214	c.83C>T	c.(82-84)TCC>TTC	p.S28F	CCDC21_uc001blr.2_Missense_Mutation_p.S28F|CCDC21_uc010ofa.1_Intron	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	28						centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		AAGGGCAGTTCCCTGGGGACT	0.507													5	12					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27087554	27087554	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:27087554C>T	uc001bmv.1	+	5	2501	c.2128C>T	c.(2128-2130)CGC>TGC	p.R710C	ARID1A_uc001bmt.1_Missense_Mutation_p.R710C|ARID1A_uc001bmu.1_Missense_Mutation_p.R710C|ARID1A_uc001bmw.1_Missense_Mutation_p.R327C	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	710					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TGCTCAGTCTCGCTCAGGACC	0.602			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								14	37					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27089649	27089649	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:27089649G>A	uc001bmv.1	+	8	2978	c.2605G>A	c.(2605-2607)GGC>AGC	p.G869S	ARID1A_uc001bmt.1_Missense_Mutation_p.G869S|ARID1A_uc001bmu.1_Missense_Mutation_p.G869S|ARID1A_uc001bmw.1_Missense_Mutation_p.G486S	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	869					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CCGGCCTTATGGCCCTAACAT	0.597			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								17	37					0	0	1	0	0
EYA3	2140	broad.mit.edu	37	1	28343697	28343697	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:28343697G>A	uc001bpi.1	-	8	718	c.553C>T	c.(553-555)CCA>TCA	p.P185S	EYA3_uc010ofs.1_Missense_Mutation_p.P132S|EYA3_uc010oft.1_Missense_Mutation_p.P139S|EYA3_uc001bpj.2_Missense_Mutation_p.P139S|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_RNA	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	185					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		GCTGCTGCTGGAATATTGGCA	0.398													36	76					0	0	1	0	0
PTAFR	5724	broad.mit.edu	37	1	28477170	28477170	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:28477170C>T	uc001bpl.2	-	2	490	c.363G>A	c.(361-363)CGG>CGA	p.R121R	PTAFR_uc001bpm.3_Silent_p.R121R|PTAFR_uc009vte.2_Silent_p.R121R	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	121	Cytoplasmic (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTGATGGGCCGAGTTACTG	0.557													20	55					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34011640	34011640	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:34011640C>T	uc001bxn.1	-	56	8694	c.8665G>A	c.(8665-8667)GGA>AGA	p.G2889R	CSMD2_uc001bxm.1_Missense_Mutation_p.G3033R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2889	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACATTACCTCCACACTCAGGC	0.597													18	52					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34258094	34258094	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:34258094C>T	uc001bxn.1	-	11	1389	c.1360G>A	c.(1360-1362)GAG>AAG	p.E454K	CSMD2_uc001bxm.1_Missense_Mutation_p.E494K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	454	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TAGCCCCTCTCCAAATCAAAC	0.552													24	38					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34684302	34684302	+	Silent	SNP	C	T	T	rs147248695		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:34684302C>T	uc001bxs.3	+	7	1566	c.1167C>T	c.(1165-1167)TCC>TCT	p.S389S	C1orf94_uc001bxt.2_Silent_p.S579S	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	389							protein binding				0		Myeloproliferative disorder(586;0.0393)				GCTCGACATCCGGAGGGCCCT	0.448													19	59					0	0	1	0	0
ZMYM4	9202	broad.mit.edu	37	1	35853076	35853076	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:35853076G>A	uc001byt.2	+	13	2214	c.2134G>A	c.(2134-2136)GGC>AGC	p.G712S	ZMYM4_uc009vuu.2_Missense_Mutation_p.G680S|ZMYM4_uc001byu.2_Missense_Mutation_p.G388S|ZMYM4_uc009vuv.2_Missense_Mutation_p.G451S	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	712	MYM-type 7.				multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCAGTTCTGTGGCAAGAATTG	0.303													10	33					0	0	1	0	0
NCDN	23154	broad.mit.edu	37	1	36030881	36030881	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:36030881C>T	uc001bza.2	+	8	1934	c.1807C>T	c.(1807-1809)CTA>TTA	p.L603L	NCDN_uc001bzb.2_Silent_p.L603L|NCDN_uc001bzc.2_Silent_p.L586L	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	603					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CATCCTCTTCCTATCACAGTC	0.632											OREG0013355	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	113					0	0	1	0	0
SMAP2	64744	broad.mit.edu	37	1	40879859	40879859	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:40879859C>A	uc001cfj.2	+	6	583	c.518C>A	c.(517-519)CCT>CAT	p.P173H	SMAP2_uc010ojh.1_Missense_Mutation_p.P173H|SMAP2_uc001cfk.2_Missense_Mutation_p.P143H|SMAP2_uc010oji.1_Missense_Mutation_p.P90H|SMAP2_uc010ojj.1_5'UTR	NM_022733	NP_073570	Q8WU79	SMAP2_HUMAN	small ArfGAP2	173	Interaction with clathrin heavy chains (By similarity).				regulation of ARF GTPase activity	cytoplasm|nucleus	ARF GTPase activator activity|zinc ion binding				0	Lung NSC(20;1.56e-05)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.04e-17)			CCACAGCTACCTCGGAAAAGC	0.418													8	31					3.09899e-07	3.13061e-07	1	1	0
KCNQ4	9132	broad.mit.edu	37	1	41300651	41300651	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:41300651C>T	uc001cgh.1	+	12	1708	c.1626C>T	c.(1624-1626)TTC>TTT	p.F542F	KCNQ4_uc001cgi.1_Silent_p.F488F	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	542	Cytoplasmic.				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			TTCTCAAGTTCCTGGTGGCCA	0.557													19	59					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050216	42050216	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:42050216G>T	uc001cgz.3	-	4	1466	c.253C>A	c.(253-255)CCC>ACC	p.P85T	HIVEP3_uc001cha.3_Missense_Mutation_p.P85T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	85					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GCTTCGATGGGGGGCCTTTTG	0.612													56	155					5.86059e-21	5.96202e-21	1	1	0
WDR65	149465	broad.mit.edu	37	1	43652381	43652381	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:43652381C>T	uc001cip.1	+	6	1094	c.973C>T	c.(973-975)CCT>TCT	p.P325S	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.P314S|WDR65_uc001ciq.1_Missense_Mutation_p.P325S	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	325										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGGCAGATTCCTGTGGACCC	0.443													13	43					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43773150	43773150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:43773150G>A	uc001ciu.2	+	6	899	c.820G>A	c.(820-822)GGC>AGC	p.G274S	TIE1_uc010okd.1_Missense_Mutation_p.G274S|TIE1_uc010oke.1_Missense_Mutation_p.G229S|TIE1_uc009vwq.2_Missense_Mutation_p.G230S|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'UTR|TIE1_uc010okc.1_Missense_Mutation_p.G274S	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	274	Extracellular (Potential).|EGF-like 2.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCAGTGCCCAGGCATATCAGG	0.632													20	39					0	0	1	0	0
PLK3	1263	broad.mit.edu	37	1	45267366	45267366	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:45267366C>T	uc001cmn.2	+	4	608	c.508C>T	c.(508-510)CTT>TTT	p.L170F	PLK3_uc001cmo.2_RNA	NM_004073	NP_004064	Q9H4B4	PLK3_HUMAN	polo-like kinase 3	170	Protein kinase.					membrane	ATP binding|protein binding|protein serine/threonine kinase activity				0	Acute lymphoblastic leukemia(166;0.155)					GCGGCAGATCCTTTCTGGCCT	0.592													24	67					0	0	1	0	0
CCDC163P	126661	broad.mit.edu	37	1	45963020	45963020	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:45963020C>T	uc001cnw.2	-	3	578	c.213G>A	c.(211-213)GAG>GAA	p.E71E	CCDC163P_uc001cnt.2_RNA|CCDC163P_uc001cnu.2_RNA|CCDC163P_uc009vxt.1_Silent_p.E71E|CCDC163P_uc001cnv.2_Intron|CCDC163P_uc009vxu.1_RNA|MMACHC_uc009vxv.2_5'Flank|MMACHC_uc001cny.2_5'Flank	NM_001102601	NP_001096071			hypothetical protein LOC126661												0						TCTCTGACTCCTCCCACAGCA	0.448													8	29					0	0	1	0	0
PIK3R3	8503	broad.mit.edu	37	1	46521614	46521614	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:46521614G>A	uc001cpb.3	-	7	1550	c.794C>T	c.(793-795)TCA>TTA	p.S265L	PIK3R3_uc009vyb.2_Intron|PIK3R3_uc009vyc.2_Missense_Mutation_p.S282L|PIK3R3_uc001cpc.3_Missense_Mutation_p.S265L|PIK3R3_uc010olw.1_Missense_Mutation_p.S311L|PIK3R3_uc010olv.1_Missense_Mutation_p.S55L	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	265					insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					ACCCAGACGTGATTTCAATTT	0.348													6	26					0	0	1	0	0
MOBKL2C	148932	broad.mit.edu	37	1	47075344	47075344	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:47075344C>T	uc001cqf.3	-	4	865	c.634G>A	c.(634-636)GAG>AAG	p.E212K	MKNK1_uc010omf.1_Intron|MOBKL2C_uc001cqe.3_Missense_Mutation_p.E264K	NM_201403	NP_958805	Q70IA8	MOL2C_HUMAN	MOB1, Mps One Binder kinase activator-like 2C	212							metal ion binding			pancreas(1)	1	Acute lymphoblastic leukemia(166;0.155)					CAGATCCGCTCTGTCATCTCC	0.557													14	31					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47333708	47333708	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:47333708G>A	uc001cqo.1	-	8		c.1019C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						AGCAGTAAAAGATCCAGGAGA	0.453													9	25					0	0	1	0	0
TTC39A	22996	broad.mit.edu	37	1	51760091	51760091	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:51760091T>C	uc001csl.2	-	14	1451	c.1346A>G	c.(1345-1347)AAC>AGC	p.N449S	TTC39A_uc001csk.2_Missense_Mutation_p.N414S|TTC39A_uc010ond.1_Missense_Mutation_p.N386S|TTC39A_uc010one.1_Missense_Mutation_p.N413S|TTC39A_uc010onf.1_Missense_Mutation_p.N417S|TTC39A_uc001csj.2_Missense_Mutation_p.N50S	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	449							binding			skin(1)	1						CGAGATAGGGTTGGAGGAGAA	0.582													14	21					0	0	1	0	0
LDLRAD1	388633	broad.mit.edu	37	1	54483769	54483769	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:54483769G>A	uc001cwm.1	-	1	35	c.17C>T	c.(16-18)CCC>CTC	p.P6L	LDLRAD1_uc010onz.1_Missense_Mutation_p.P6L|LDLRAD1_uc010ooa.1_Missense_Mutation_p.P6L|LDLRAD1_uc009vzn.1_RNA	NM_001010978	NP_001010978	Q5T700	LRAD1_HUMAN	low density lipoprotein receptor class A domain	6						integral to membrane	receptor activity			skin(2)|large_intestine(1)	3						TCTCACCTGGGGGAAGACCTT	0.582													11	35					0	0	1	0	0
BSND	7809	broad.mit.edu	37	1	55474167	55474167	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:55474167G>A	uc001cye.2	+	4	1072	c.829G>A	c.(829-831)GAG>AAG	p.E277K		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	277	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						AAAGGTGGAGGAGAAGGAGGC	0.597													12	24					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57406671	57406671	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:57406671C>T	uc001cyp.2	-	9	1316	c.1249G>A	c.(1249-1251)GAC>AAC	p.D417N	C8B_uc010oon.1_Missense_Mutation_p.D355N|C8B_uc010ooo.1_Missense_Mutation_p.D365N	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	417	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACCATGGTGTCCCTCTTGTTT	0.552													9	24					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675968	62675968	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:62675968G>A	uc001dae.3	+	4	1824	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	508										ovary(1)|skin(1)	2						TAGACAAAAAGAAATTCCCTT	0.453													9	25					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65119559	65119559	+	Silent	SNP	C	T	T	rs143213867		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:65119559C>T	uc001dbo.1	+	11	1611	c.1506C>T	c.(1504-1506)ATC>ATT	p.I502I	CACHD1_uc001dbp.1_Silent_p.I257I|CACHD1_uc001dbq.1_Silent_p.I257I	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	553	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						GGCAAAATATCCTAAGGTAAG	0.373													13	56					0	0	1	0	0
DNAJC6	9829	broad.mit.edu	37	1	65871640	65871640	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:65871640C>T	uc001dcd.1	+	16	2308	c.2144C>T	c.(2143-2145)CCC>CTC	p.P715L	DNAJC6_uc010opc.1_Missense_Mutation_p.P702L|DNAJC6_uc001dce.1_Missense_Mutation_p.P772L	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	715	Pro-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						AAGGCGTCTCCCCAGCCTATG	0.592													21	37					0	0	1	0	0
WDR78	79819	broad.mit.edu	37	1	67390495	67390495	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:67390495G>A	uc001dcx.2	-	1	76	c.20C>T	c.(19-21)TCC>TTC	p.S7F	WDR78_uc001dcy.2_Missense_Mutation_p.S7F|WDR78_uc001dcz.2_Missense_Mutation_p.S7F|MIER1_uc001dda.3_5'Flank|MIER1_uc010opf.1_5'Flank|MIER1_uc009way.2_5'Flank|MIER1_uc001ddc.2_5'Flank|MIER1_uc001ddh.2_5'Flank|MIER1_uc001ddf.2_5'Flank|MIER1_uc001ddg.2_5'Flank|MIER1_uc010opg.1_5'Flank|MIER1_uc001dde.2_5'Flank	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	7										ovary(2)	2						CGAGGCTCCGGAATGTTTGCC	0.697													25	44					0	0	1	0	0
MIER1	57708	broad.mit.edu	37	1	67424654	67424654	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:67424654T>G	uc001dde.2	+	6	756	c.622T>G	c.(622-624)TAT>GAT	p.Y208D	MIER1_uc010opf.1_Missense_Mutation_p.Y172D|MIER1_uc009way.2_Missense_Mutation_p.Y172D|MIER1_uc001ddc.2_Missense_Mutation_p.Y208D|MIER1_uc001ddh.2_Missense_Mutation_p.Y92D|MIER1_uc001ddf.2_Missense_Mutation_p.Y172D|MIER1_uc001ddg.2_Missense_Mutation_p.Y128D|MIER1_uc010opg.1_Missense_Mutation_p.Y172D|MIER1_uc001ddj.1_Missense_Mutation_p.Y155D|MIER1_uc001ddi.2_Missense_Mutation_p.Y155D	NM_001077700	NP_001071168	Q8N108	MIER1_HUMAN	mesoderm induction early response 1 isoform b	179	Glu-rich.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)	1						TCGATGTAAATATTTTGATAC	0.338													8	22					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75078435	75078435	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:75078435G>A	uc001dgg.2	-	9	1278	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.F147F	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	353										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCCATTCAGGAAAAAGGTGA	0.423													14	37					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82408771	82408771	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:82408771C>T	uc001dit.3	+	6	697	c.516C>T	c.(514-516)TTC>TTT	p.F172F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.F172F|LPHN2_uc001div.2_Silent_p.F172F|LPHN2_uc009wcd.2_Silent_p.F172F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	172	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AAATTTATTTCATGCCCTGGA	0.398													24	52					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82416724	82416724	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:82416724G>A	uc001dit.3	+	8	1696	c.1515G>A	c.(1513-1515)ATG>ATA	p.M505I	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.M505I|LPHN2_uc001div.2_Missense_Mutation_p.M505I|LPHN2_uc009wcd.2_Missense_Mutation_p.M505I|LPHN2_uc001diw.2_Missense_Mutation_p.M76I	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	505	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ATCTCTGCATGATTTCCACTG	0.443													30	54					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86948026	86948026	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:86948026G>A	uc001dlt.2	+	5	825	c.696G>A	c.(694-696)ACG>ACA	p.T232T	CLCA1_uc001dls.1_Silent_p.T171T	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	232					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CCCGCCAGACGGAGAAGGCTT	0.428													25	60					0	0	1	0	0
LRRC8D	55144	broad.mit.edu	37	1	90401139	90401139	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:90401139C>T	uc001dnm.2	+	3	2937	c.2512C>T	c.(2512-2514)CTG>TTG	p.L838L	LRRC8D_uc001dnn.2_Silent_p.L838L	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	838						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		TTTTGATACCCTGCCACTCGA	0.473													24	57					0	0	1	0	0
HFM1	164045	broad.mit.edu	37	1	91784718	91784718	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:91784718A>G	uc001doa.3	-	25	2829	c.2729T>C	c.(2728-2730)TTG>TCG	p.L910S	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.L589S|HFM1_uc001dob.3_Intron|HFM1_uc010osv.1_Missense_Mutation_p.L594S	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	910	SEC63.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		CAAACTATTCAATAGTACAGC	0.308													12	31					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94502326	94502326	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:94502326C>T	uc001dqh.2	-	26	3936	c.3832G>A	c.(3832-3834)GAG>AAG	p.E1278K		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1278	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCAGAATCCTCCGTGACCTTC	0.438													41	103					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94546218	94546218	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:94546218C>T	uc001dqh.2	-	8	1019	c.915G>A	c.(913-915)CAG>CAA	p.Q305Q	ABCA4_uc010otn.1_Silent_p.Q305Q	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	305	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GACCACCATTCTGCATGAGGG	0.547													21	52					0	0	1	0	0
F3	2152	broad.mit.edu	37	1	95005851	95005851	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:95005851T>C	uc001dqr.2	-	2	353	c.174A>G	c.(172-174)GAA>GAG	p.E58E	F3_uc001dqp.2_RNA|F3_uc001dqq.2_RNA|F3_uc001dqs.2_Silent_p.E58E|F3_uc001dqt.2_RNA	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	58	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	CGGGTTTGGGTTCCCACTCCA	0.358													24	46					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100154805	100154805	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:100154805G>A	uc001dsg.2	+	7	1432	c.989G>A	c.(988-990)CGA>CAA	p.R330Q	PALMD_uc001dsf.2_Missense_Mutation_p.R330Q	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	330					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		CCTCATCCCCGATCAGTGATT	0.468													7	34					0	0	1	0	0
NTNG1	22854	broad.mit.edu	37	1	107867198	107867198	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:107867198G>A	uc001dvh.3	+	3	1259	c.541G>A	c.(541-543)GAC>AAC	p.D181N	NTNG1_uc001dvf.3_Missense_Mutation_p.D181N|NTNG1_uc010out.1_Missense_Mutation_p.D181N|NTNG1_uc001dvc.3_Missense_Mutation_p.D181N|NTNG1_uc001dvd.1_Missense_Mutation_p.D181N	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	181	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		TTATGCCACAGACTGCTTAGA	0.428													9	40					0	0	1	0	0
FNDC7	163479	broad.mit.edu	37	1	109273436	109273436	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:109273436C>T	uc001dvx.2	+	9	1765	c.1765C>T	c.(1765-1767)CAA>TAA	p.Q589*	FNDC7_uc010ova.1_Nonsense_Mutation_p.Q356*	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	590	Fibronectin type-III 7.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		TCACACTCATCAAAACCACTG	0.478													19	70					0	0	1	0	0
STXBP3	6814	broad.mit.edu	37	1	109342872	109342872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:109342872G>A	uc001dvy.2	+	17	1555	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	STXBP3_uc001dvz.2_RNA	NM_007269	NP_009200	O00186	STXB3_HUMAN	syntaxin binding protein 3	494					negative regulation of calcium ion-dependent exocytosis|neutrophil degranulation|platelet aggregation|protein transport|vesicle docking involved in exocytosis	cytosol|nucleus|platelet alpha granule|specific granule|tertiary granule	syntaxin-2 binding			ovary(3)|central_nervous_system(1)	4		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0386)|Lung(183;0.104)|COAD - Colon adenocarcinoma(174;0.137)|Epithelial(280;0.231)		AGATTCAAAAGAATGGCCATA	0.348													16	40					0	0	1	0	0
KIAA1324	57535	broad.mit.edu	37	1	109731695	109731695	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:109731695C>T	uc001dwq.2	+	11	1363	c.1227C>T	c.(1225-1227)ACC>ACT	p.T409T	KIAA1324_uc009wex.1_Silent_p.T359T|KIAA1324_uc009wey.2_Silent_p.T322T|KIAA1324_uc010ovg.1_Silent_p.T307T|KIAA1324_uc001dwr.2_Silent_p.T59T	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	409	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CAGACTGTACCCGCTGCCCTG	0.527													20	76					0	0	1	0	0
C1orf183	55924	broad.mit.edu	37	1	112270049	112270049	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:112270049C>T	uc001ebo.1	-	2	593	c.435G>A	c.(433-435)TTG>TTA	p.L145L	C1orf183_uc001ebp.1_Silent_p.L130L	NM_019099	NP_061972	Q9NTI7	CA183_HUMAN	hypothetical protein LOC55924 isoform 1	145										ovary(2)	2		all_cancers(81;7.29e-06)|all_epithelial(167;4.98e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.16e-05)		Lung(183;0.0155)|Colorectal(144;0.0289)|all cancers(265;0.0592)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0852)|COAD - Colon adenocarcinoma(174;0.113)		CCCGGGACATCAACGTGGAGG	0.587													17	35					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115142865	115142865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:115142865G>A	uc001efd.1	-	15	2767	c.2065C>T	c.(2065-2067)CTT>TTT	p.L689F	DENND2C_uc001eez.2_Intron|DENND2C_uc001efc.1_Missense_Mutation_p.L632F	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	689	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGCTCCAAAAGGAGAGAGGCA	0.403													7	30					0	0	1	0	0
CD58	965	broad.mit.edu	37	1	117086949	117086949	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:117086949G>A	uc001egm.2	-	2	469	c.348C>T	c.(346-348)TTC>TTT	p.F116F	CD58_uc001egn.2_RNA|CD58_uc010owy.1_Silent_p.F116F|CD58_uc001ego.1_RNA|CD58_uc001egp.3_Silent_p.F116F	NM_001779	NP_001770	P19256	LFA3_HUMAN	CD58 molecule isoform 1	116	Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	anchored to membrane|integral to plasma membrane	protein binding				0	Lung SC(450;0.225)	all_cancers(81;0.000363)|all_lung(203;0.000118)|all_epithelial(167;0.000149)|Lung NSC(69;0.000577)		Lung(183;0.0086)|LUSC - Lung squamous cell carcinoma(189;0.0528)|Colorectal(144;0.0775)|all cancers(265;0.109)|Epithelial(280;0.118)|COAD - Colon adenocarcinoma(174;0.121)		CATAAAGAAAGAACTTCATGG	0.338													13	35					0	0	1	0	0
MAN1A2	10905	broad.mit.edu	37	1	118042153	118042153	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:118042153C>T	uc001ehd.1	+	11	2375	c.1654C>T	c.(1654-1656)CAG>TAG	p.Q552*	MAN1A2_uc009whg.1_Nonsense_Mutation_p.Q342*	NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	552	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		AAGATACAGGCAGTGGGGCTG	0.468													14	46					0	0	1	0	0
WDR3	10885	broad.mit.edu	37	1	118486107	118486107	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:118486107C>T	uc010oxe.1	+	11	1252	c.1186C>T	c.(1186-1188)CCA>TCA	p.P396S	WDR3_uc001ehi.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	396						nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		TTCACTGAATCCATCCTTGCC	0.468													18	45					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118523964	118523964	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:118523964G>A	uc001ehk.2	-	43	6001	c.5933C>T	c.(5932-5934)CCA>CTA	p.P1978L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1978						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AGAAATCTCTGGTTTTGGAAG	0.348													21	43					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118533514	118533514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:118533514C>T	uc001ehk.2	-	38	5559	c.5491G>A	c.(5491-5493)GAG>AAG	p.E1831K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1831						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTAGTTTCCTCCATTTTAGGG	0.284													24	68					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119927557	119927557	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:119927557C>T	uc001ehq.1	+	5	794	c.442C>T	c.(442-444)CTA>TTA	p.L148L	HAO2_uc001ehr.1_Silent_p.L148L	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	148	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GGTAGAATCCCTAGGTTTCAA	0.463													22	54					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120293494	120293494	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:120293494G>A	uc001eid.2	-	9	1509	c.1458C>T	c.(1456-1458)TTC>TTT	p.F486F	HMGCS2_uc010oxj.1_Silent_p.F444F|HMGCS2_uc001eie.2_Silent_p.F394F	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	486					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		AAGTACCTGGGAAAAGGCTGT	0.498													74	160					0	0	1	0	0
ITGA10	8515	broad.mit.edu	37	1	145541454	145541454	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:145541454C>T	uc001eoa.2	+	28	3318	c.3242C>T	c.(3241-3243)TCC>TTC	p.S1081F	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.S950F|ITGA10_uc009wiw.2_Missense_Mutation_p.S938F|ITGA10_uc010oyw.1_Missense_Mutation_p.S988F	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	1081	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AAGTTCAAGTCCCTGACGGTG	0.507													4	12					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561831	145561831	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:145561831G>A	uc001eob.1	+	10	1627	c.1519G>A	c.(1519-1521)GAT>AAT	p.D507N	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.D350N	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	507										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGAGAAAAGGATGCTGCCCG	0.622													41	115					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110527	151110527	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:151110527A>G	uc001ewu.2	-	9	902	c.602T>C	c.(601-603)GTT>GCT	p.V201A	SEMA6C_uc001ewv.2_Missense_Mutation_p.V201A|SEMA6C_uc001eww.2_Intron|SEMA6C_uc010pcq.1_Missense_Mutation_p.V201A|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	201	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCTTCTGTAAACTACAGCATC	0.622													25	39					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058352	152058352	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:152058352C>T	uc001ezo.1	-	3	1871	c.1806G>A	c.(1804-1806)GAG>GAA	p.E602E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	602							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTCTGTTTTTCTCACCAGGTG	0.537													39	87					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152328704	152328704	+	Nonsense_Mutation	SNP	G	A	A	rs143786396		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:152328704G>A	uc001ezw.3	-	3	1631	c.1558C>T	c.(1558-1560)CAG>TAG	p.Q520*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	520	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCCATGCTGTCCAAAACCA	0.512													66	150					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152732336	152732337	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:152732336_152732337CC>TT	uc001fal.1	+	2	330_331	c.272_273CC>TT	c.(271-273)ACC>ATT	p.T91I		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	91	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGTCTAAGACCACCCAGGTGA	0.559													41	145					0	0	1	0	0
LELP1	149018	broad.mit.edu	37	1	153177437	153177437	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:153177437C>T	uc001fbl.2	+	2	364	c.254C>T	c.(253-255)TCC>TTC	p.S85F		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	85	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCCCTTCATCCTGCCCACAT	0.642													7	23					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153658315	153658315	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:153658315G>A	uc001fcs.3	+	9	2060	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	NPR1_uc010pdz.1_Missense_Mutation_p.E293K|NPR1_uc010pea.1_Missense_Mutation_p.E51K	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	547	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCTAACCACAGAGGGCCAGTT	0.562													14	48					0	0	1	0	0
INTS3	65123	broad.mit.edu	37	1	153721217	153721217	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:153721217C>T	uc009wom.2	+	7	791	c.570C>T	c.(568-570)ATC>ATT	p.I190I	INTS3_uc001fct.2_Silent_p.I190I|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_5'UTR|INTS3_uc010peb.1_5'Flank|INTS3_uc001fcw.2_5'Flank	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	191					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TTCTGGATATCCTGACAGAGC	0.468													47	124					0	0	1	0	0
UBAP2L	9898	broad.mit.edu	37	1	154229858	154229858	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:154229858C>T	uc001fep.3	+	20	2557	c.2390C>T	c.(2389-2391)CCG>CTG	p.P797L	UBAP2L_uc009wot.2_Missense_Mutation_p.P797L|UBAP2L_uc010pek.1_Missense_Mutation_p.P789L|UBAP2L_uc010pel.1_Missense_Mutation_p.P807L|UBAP2L_uc010pen.1_Missense_Mutation_p.P711L|UBAP2L_uc001feq.2_5'UTR|UBAP2L_uc001fer.2_5'UTR	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	797					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GGGGTCCCGCCGTTGTTGCCT	0.473													25	49					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154519928	154519928	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:154519928G>A	uc009wow.2	+	12	1834	c.996G>A	c.(994-996)GGG>GGA	p.G332G	TDRD10_uc001ffd.2_Silent_p.G332G|TDRD10_uc001ffe.2_Silent_p.G253G	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	332							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TCCTCAAAGGGAAAATCACTG	0.527													28	58					0	0	1	0	0
SHC1	6464	broad.mit.edu	37	1	154942551	154942551	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:154942551G>A	uc001ffv.2	-	1	673	c.452C>T	c.(451-453)CCC>CTC	p.P151L	SHC1_uc001ffz.1_5'Flank|SHC1_uc001ffw.2_Missense_Mutation_p.P151L|SHC1_uc001ffx.2_Missense_Mutation_p.P41L|SHC1_uc001ffy.2_Missense_Mutation_p.P41L	NM_183001	NP_892113	P29353	SHC1_HUMAN	SHC-transforming protein 1 isoform 1	151					activation of MAPK activity|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|positive regulation of DNA replication|Ras protein signal transduction|regulation of epidermal growth factor receptor activity|regulation of growth	cytosol|mitochondrial matrix|Shc-EGFR complex	epidermal growth factor receptor binding|insulin receptor binding|insulin-like growth factor receptor binding|phospholipid binding|protein binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(1)|skin(1)	2	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTTGTCGTTGGGATGCAGCCA	0.637													21	71					0	0	1	0	0
MUC1	4582	broad.mit.edu	37	1	155159801	155159802	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:155159801_155159802GG>AA	uc010pfj.1	-	6	1283_1284	c.877_878CC>TT	c.(877-879)CCA>TTA	p.P293L	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_Missense_Mutation_p.P123L|MUC1_uc001fhz.2_Missense_Mutation_p.P123L|MUC1_uc010pfb.1_Missense_Mutation_p.P123L|MUC1_uc010pfc.1_RNA|MUC1_uc009wph.2_Missense_Mutation_p.P123L|MUC1_uc010pfd.1_Missense_Mutation_p.P145L|MUC1_uc010pfe.1_RNA|MUC1_uc010pff.1_Missense_Mutation_p.P201L|MUC1_uc009wpi.2_Missense_Mutation_p.P123L|MUC1_uc010pfg.1_RNA|MUC1_uc010pfh.1_Missense_Mutation_p.P269L|MUC1_uc010pfi.1_Missense_Mutation_p.P269L|MUC1_uc010pfk.1_RNA|MUC1_uc010pfl.1_RNA|MUC1_uc001fin.2_Missense_Mutation_p.P102L|MUC1_uc009wpk.2_Missense_Mutation_p.P145L|MUC1_uc001fip.2_Missense_Mutation_p.S116F|MUC1_uc009wqg.2_Missense_Mutation_p.P154L|MUC1_uc009wpo.2_Missense_Mutation_p.P160L|MUC1_uc009wps.2_Missense_Mutation_p.P181L|MUC1_uc009wpt.2_Missense_Mutation_p.P184L|MUC1_uc001fic.2_Missense_Mutation_p.P172L|MUC1_uc009wpu.2_RNA|MUC1_uc009wpq.2_Missense_Mutation_p.P186L|MUC1_uc009wpv.2_Missense_Mutation_p.P127L|MUC1_uc001fim.2_Missense_Mutation_p.P93L|MUC1_uc001fib.2_Missense_Mutation_p.P127L|MUC1_uc009wpw.2_Missense_Mutation_p.P120L|MUC1_uc001fie.2_Missense_Mutation_p.P111L|MUC1_uc009wpr.2_Missense_Mutation_p.P88L|MUC1_uc001fig.2_Missense_Mutation_p.P109L|MUC1_uc001fif.2_Missense_Mutation_p.P100L|MUC1_uc009wpx.2_Missense_Mutation_p.P182L|MUC1_uc001fid.2_Missense_Mutation_p.P173L|MUC1_uc009wpj.2_RNA|MUC1_uc001fij.2_Missense_Mutation_p.P207L|MUC1_uc009wpy.2_RNA|MUC1_uc010pfm.1_Missense_Mutation_p.P123L|MUC1_uc001fiq.2_Missense_Mutation_p.P123L|MUC1_uc009wpz.2_Missense_Mutation_p.P225L|MUC1_uc010pfn.1_Missense_Mutation_p.S157F|MUC1_uc009wqa.2_Missense_Mutation_p.P281L|MUC1_uc010pfo.1_Missense_Mutation_p.P145L|MUC1_uc010pfp.1_Missense_Mutation_p.P145L|MUC1_uc001fii.2_RNA|MUC1_uc001fih.2_RNA|MUC1_uc001fia.2_Missense_Mutation_p.P198L|MUC1_uc009wqc.2_Missense_Mutation_p.P195L|MUC1_uc009wqd.2_Missense_Mutation_p.P219L|MUC1_uc009wqb.2_Missense_Mutation_p.P123L|MUC1_uc010pfq.1_Missense_Mutation_p.P195L|MUC1_uc010pfr.1_Missense_Mutation_p.P155L|MUC1_uc001fit.2_Missense_Mutation_p.P123L|MUC1_uc009wqe.2_Missense_Mutation_p.P102L|MUC1_uc001fil.2_Missense_Mutation_p.S135F|MUC1_uc009wpm.2_Missense_Mutation_p.S175F|MUC1_uc009wpp.2_Missense_Mutation_p.S105F|MUC1_uc010pfs.1_RNA|MUC1_uc001fik.2_Missense_Mutation_p.P216L|MUC1_uc001fio.2_Missense_Mutation_p.P146L|MUC1_uc009wqf.2_Intron|MUC1_uc009wpl.2_Missense_Mutation_p.P132L|MUC1_uc009wpn.2_Missense_Mutation_p.S196F			P15941	MUC1_HUMAN	SubName: Full=Mucin 1, cell surface associated;	1198	Cytoplasmic (Potential).|Interaction with P53.					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ATCCCGGGCTGGAAAGATGTCC	0.599			T	IGH@	B-NHL								24	73					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155723145	155723145	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:155723145G>A	uc001flz.2	-	29	5789	c.5692C>T	c.(5692-5694)CAC>TAC	p.H1898Y	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Missense_Mutation_p.H1898Y|GON4L_uc009wrh.1_Missense_Mutation_p.H1898Y|GON4L_uc001fma.1_Missense_Mutation_p.H1898Y	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1898					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GCCTCTCGGTGGGGGCTGCTG	0.592													49	107					0	0	1	0	0
SMG5	23381	broad.mit.edu	37	1	156222867	156222867	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:156222867G>A	uc001foc.3	-	18	2654	c.2505C>T	c.(2503-2505)CTC>CTT	p.L835L	SMG5_uc009wrv.2_Silent_p.L320L	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	835	Potential.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					GAGACACTTCGAGCTGGTGAG	0.662													9	24					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156351962	156351962	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:156351962G>A	uc010pho.1	+	7	1120	c.1082G>A	c.(1081-1083)GGA>GAA	p.G361E	RHBG_uc010phm.1_Missense_Mutation_p.D194N|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.G292E|RHBG_uc009wrz.2_Missense_Mutation_p.G329E|RHBG_uc001for.2_Missense_Mutation_p.G331E	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	361	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CTTGTGGCTGGACTTGCCACC	0.542													35	86					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156812213	156812213	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:156812213G>A	uc010pht.1	-	18	3468	c.3214C>T	c.(3214-3216)CGA>TGA	p.R1072*	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1072	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGCAAAGATCGAAGATGGCTC	0.592													28	68					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156882111	156882111	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:156882111C>T	uc001fqj.1	+	16	2140	c.2024C>T	c.(2023-2025)CCC>CTC	p.P675L	PEAR1_uc001fqk.1_Missense_Mutation_p.P300L	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	675	EGF-like 9.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ACCTGCCATCCCCAGGATGGG	0.597													11	26					0	0	1	0	0
OR10T2	128360	broad.mit.edu	37	1	158369215	158369215	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:158369215G>A	uc010pih.1	-	1	42	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AACCCACCAGGATGAACTGTG	0.438													13	31					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435818	158435818	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:158435818C>T	uc010pij.1	+	1	467	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TTCACTGTCTCCCTGGTCACC	0.532													46	134					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158632730	158632730	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:158632730C>T	uc001fst.1	-	17	2425	c.2226G>A	c.(2224-2226)CAG>CAA	p.Q742Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	742	Spectrin 8.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGATATCCACCTGATCCTAAG	0.423													14	39					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158813856	158813856	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:158813856C>T	uc001fsz.1	+	4	714	c.514C>T	c.(514-516)CAT>TAT	p.H172Y		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	172					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AGCTGTGGATCATCCCCCACT	0.493													28	111					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158815707	158815707	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:158815707G>A	uc001fsz.1	+	5	1101	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	301	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					CAGAATTATCGAAATAGCAAA	0.338													20	36					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159170689	159170689	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:159170689G>A	uc001ftl.2	+	9	1316	c.1174G>A	c.(1174-1176)GAC>AAC	p.D392N	CADM3_uc001ftk.2_Missense_Mutation_p.D426N|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	392	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					AGGAGGGGACGACAAGAAGGA	0.612													17	59					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175432	159175432	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:159175432C>T	uc001fto.2	+	2	443	c.203C>T	c.(202-204)ACC>ATC	p.T68I	DARC_uc001ftp.3_Missense_Mutation_p.T70I	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	68	Helical; Name=1; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TTCATCCTCACCAGTGTCCTG	0.582													30	85					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159284281	159284281	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:159284281G>A	uc010piu.1	-	1	169	c.169C>T	c.(169-171)CAC>TAC	p.H57Y		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					ATGGGGGTGTGAAGATGATGG	0.458													42	89					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159409623	159409623	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:159409623C>T	uc010piv.1	+	1	75	c.75C>T	c.(73-75)TTC>TTT	p.F25F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	25	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					ACTTTGTTTTCCAAGGTTTCT	0.398													23	83					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159856450	159856450	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:159856450G>A	uc001fui.2	-	6	636	c.618C>T	c.(616-618)ATC>ATT	p.I206I	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Silent_p.I121I|CCDC19_uc001ful.2_Silent_p.I121I|CCDC19_uc009wtc.1_Silent_p.I206I	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	206	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GGGCATCCCGGATGGCATGGC	0.473													51	110					0	0	1	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011505	160011505	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:160011505C>T	uc001fuw.1	-	2	968	c.818G>A	c.(817-819)GGT>GAT	p.G273D		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	273	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTCACCCTCACCACTGCGAAG	0.537													20	41					0	0	1	0	0
HSPA6	3310	broad.mit.edu	37	1	161495658	161495659	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:161495658_161495659GG>AA	uc001gap.2	+	2	1870_1871	c.1210_1211GG>AA	c.(1210-1212)GGG>AAG	p.G404K	HSPA6_uc001gaq.2_Missense_Mutation_p.G404K	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	404					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CCTGTCTCTGGGGCTGGAGACA	0.599													5	32					0	0	1	0	0
NOS1AP	9722	broad.mit.edu	37	1	162325116	162325117	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:162325116_162325117GG>AA	uc001gbv.2	+	7	1122_1123	c.735_736GG>AA	c.(733-738)AAGGAA>AAAAAA	p.E246K	NOS1AP_uc010pkr.1_Missense_Mutation_p.E241K|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.E241K	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	246					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CTGTAGGGAAGGAAGGAGGCTC	0.559													18	69					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167663498	167663498	+	Missense_Mutation	SNP	G	A	A	rs145248380		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:167663498G>A	uc001gem.2	+	5	620	c.433G>A	c.(433-435)GAC>AAC	p.D145N	RCSD1_uc010pli.1_Missense_Mutation_p.D115N	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	145										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					TGTCAGCTTCGACCAGCCCCC	0.582													12	20					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511350	169511350	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:169511350C>T	uc001ggg.1	-	13	3123	c.2978G>A	c.(2977-2979)GGA>GAA	p.G993E		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	993	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ACTCTGCTTTCCAGGCTTGTT	0.473													47	110					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169519969	169519969	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:169519969G>T	uc001ggg.1	-	9	1450	c.1305C>A	c.(1303-1305)TTC>TTA	p.F435L	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	435	F5/8 type A 2.|Plastocyanin-like 3.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CCATATTTTTGAACACGATCT	0.373													8	23					0.000157383	0.000158224	1	1	0
MYOC	4653	broad.mit.edu	37	1	171605745	171605745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:171605745G>A	uc001ghu.2	-	3	857	c.835C>T	c.(835-837)CCC>TCC	p.P279S	MYOC_uc010pmk.1_Missense_Mutation_p.P221S	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	279	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TGGGTGTAGGGGTAGGTGGGC	0.537													23	47					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175332903	175332903	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:175332903G>A	uc001gkp.1	-	11	2729	c.2648C>T	c.(2647-2649)TCC>TTC	p.S883F	TNR_uc009wwu.1_Missense_Mutation_p.S883F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	883	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGGGCTCCAGGAGACCATCAC	0.438													22	42					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247797	177247797	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:177247797C>T	uc001glf.2	+	7	1423	c.1111C>T	c.(1111-1113)CGC>TGC	p.R371C	FAM5B_uc010pna.1_Missense_Mutation_p.R121C|FAM5B_uc001glg.2_Missense_Mutation_p.R266C	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	371						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCTTCAGCACCGCTACCAGCA	0.587													49	124					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179526234	179526234	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:179526234C>T	uc001gmq.3	-	5	751	c.666G>A	c.(664-666)ATG>ATA	p.M222I	NPHS2_uc009wxi.2_Intron	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	222	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						GGAGACGCTTCATAGTGGTTT	0.428													8	22					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181687219	181687219	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:181687219C>T	uc001gow.2	+	12	1719	c.1554C>T	c.(1552-1554)CTC>CTT	p.L518L	CACNA1E_uc009wxs.2_Silent_p.L425L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	518	Helical; Name=S2 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTCTGGGACTCTTCCTCTTGG	0.468													8	21					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186277347	186277348	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:186277347_186277348GG>AA	uc001gru.3	+	7	2547_2548	c.2496_2497GG>AA	c.(2494-2499)AAGGAG>AAAAAG	p.E833K	PRG4_uc001grt.3_Missense_Mutation_p.E792K|PRG4_uc009wyl.2_Missense_Mutation_p.E740K|PRG4_uc009wym.2_Missense_Mutation_p.E699K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	833	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|57.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTACCCCCAAGGAGCCTGCACC	0.584													55	141					0	0	1	0	0
TPR	7175	broad.mit.edu	37	1	186304547	186304547	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:186304547G>A	uc001grv.2	-	34	5131	c.4834C>T	c.(4834-4836)CGC>TGC	p.R1612C		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1612	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CTTTCCAAGCGACTAATTCGA	0.428			T	NTRK1	papillary thyroid								33	69					0	0	1	0	0
PTGS2	5743	broad.mit.edu	37	1	186645824	186645824	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:186645824G>A	uc001gsb.2	-	7	882	c.745C>T	c.(745-747)CCT>TCT	p.P249S	PTGS2_uc009wyo.2_Missense_Mutation_p.P96S	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	249					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	ACTGTGGGAGGATACATCTCT	0.383													7	20					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067360	190067360	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:190067360C>T	uc001gse.1	-	8	2321	c.2089G>A	c.(2089-2091)GAT>AAT	p.D697N	FAM5C_uc010pot.1_Missense_Mutation_p.D595N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	697						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGTGCTGAATCCTGGGATCCC	0.468													27	59					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190203543	190203543	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:190203543G>A	uc001gse.1	-	5	915	c.683C>T	c.(682-684)TCT>TTT	p.S228F	FAM5C_uc010pot.1_Missense_Mutation_p.S126F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	228						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AACCAGAACAGAACTGACAGA	0.383													16	34					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197073314	197073314	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:197073314A>G	uc001gtu.2	-	18	5324	c.5067T>C	c.(5065-5067)GTT>GTC	p.V1689V	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1689					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GTTTCATCTTAACAGTTGACT	0.313													7	27					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197111966	197111966	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:197111966A>T	uc001gtu.2	-	3	1673	c.1416T>A	c.(1414-1416)TTT>TTA	p.F472L	ASPM_uc001gtv.2_Missense_Mutation_p.F472L|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	472					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GAACTGCAGAAAATTTAGGAT	0.348													35	68					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201356074	201356074	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:201356074C>T	uc001gwm.2	-	3	650	c.415G>A	c.(415-417)GAA>AAA	p.E139K	LAD1_uc009wzu.1_Missense_Mutation_p.E161K	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	139						basement membrane	structural molecule activity				0						GGTGGGATTTCCAGTTCCTTC	0.632													12	57					0	0	1	0	0
TNNI1	7135	broad.mit.edu	37	1	201398282	201398282	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:201398282G>A	uc001gwo.1	-	2		c.289C>T						P19237	TNNI1_HUMAN	Homo sapiens mRNA for troponin I (TNNI1 gene), alternative termination.						muscle filament sliding|regulation of striated muscle contraction	cytosol|troponin complex	actin binding|tropomyosin binding				0						TTAAAGTCTGGGATAAGATTC	0.507													4	11					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202287465	202287465	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:202287465G>A	uc001gxu.2	+	18	2034	c.2034G>A	c.(2032-2034)GGG>GGA	p.G678G	LGR6_uc001gxv.2_Silent_p.G626G|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.G539G	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	678	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGGCCTATGGGAAGTCCCCCT	0.682													7	12					0	0	1	0	0
CHIT1	1118	broad.mit.edu	37	1	203192781	203192781	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:203192781C>T	uc001gzn.2	-	5	418	c.322G>A	c.(322-324)GAT>AAT	p.D108N	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_5'Flank|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.D99N	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	108					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						GCTACCATATCTGTGAACCTG	0.537													17	69					0	0	1	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204216589	204216589	+	Splice_Site	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:204216589C>T	uc001hau.2	-	13	2142	c.1825_splice	c.e13-1	p.A609_splice	PLEKHA6_uc009xav.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3											ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TTGTCAGGGCCTACGGGGGAA	0.567													5	15					0	0	1	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204218034	204218034	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:204218034G>A	uc001hau.2	-	12	2056	c.1739C>T	c.(1738-1740)GCC>GTC	p.A580V		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	580										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TTCTGGGTAGGCGGGCTGGCT	0.577													9	19					0	0	1	0	0
PPP1R15B	84919	broad.mit.edu	37	1	204375261	204375261	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:204375261C>T	uc001hav.3	-	2	2506	c.2101G>A	c.(2101-2103)GGA>AGA	p.G701R		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	701					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			AAGCATGTTCCCTGGAGTCTA	0.408													16	49					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205273110	205273110	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:205273110G>A	uc001hce.2	-	7	1482	c.1355C>T	c.(1354-1356)CCC>CTC	p.P452L		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	452					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GCGCTGTCGGGGCTTCTTGAG	0.642													3	22					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206230863	206230863	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:206230863C>T	uc001hds.2	+	2	1154	c.996C>T	c.(994-996)TGC>TGT	p.C332C		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	332	Helical; Name=7; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TCAACAGCTGCTGCAACCCCT	0.493													4	22					0	0	1	0	0
IKBKE	9641	broad.mit.edu	37	1	206650147	206650147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:206650147C>T	uc001hdz.1	+	7	1035	c.667C>T	c.(667-669)CCC>TCC	p.P223S	IKBKE_uc009xbu.1_Missense_Mutation_p.P223S|IKBKE_uc009xbv.1_Missense_Mutation_p.P223S|IKBKE_uc001hea.1_Missense_Mutation_p.P138S	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	223	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GCCCTTCATCCCCTTTGGTGG	0.627													16	42					0	0	1	0	0
IKBKE	9641	broad.mit.edu	37	1	206651675	206651675	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:206651675C>T	uc001hdz.1	+	9	1353	c.985C>T	c.(985-987)CAC>TAC	p.H329Y	IKBKE_uc009xbv.1_Missense_Mutation_p.H329Y|IKBKE_uc001hea.1_Missense_Mutation_p.H244Y	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	329					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					TATCCATGCCCACAACACGTA	0.562													42	124					0	0	1	0	0
DYRK3	8444	broad.mit.edu	37	1	206821727	206821727	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:206821727T>C	uc001hej.2	+	3	1352	c.1184T>C	c.(1183-1185)TTT>TCT	p.F395S	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.F375S	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	395	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			ATATGGAGTTTTGGCTGCATC	0.488													37	91					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207105085	207105085	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:207105085C>T	uc001hez.2	-	9	2255	c.2071G>A	c.(2071-2073)GAA>AAA	p.E691K	PIGR_uc009xbz.2_Missense_Mutation_p.E691K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	691	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCCAAATTCCCTGGAGTTC	0.517													28	89					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207639965	207639965	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:207639965T>C	uc001hfw.2	+	2	247	c.153T>C	c.(151-153)TGT>TGC	p.C51C	CR2_uc001hfv.2_Silent_p.C51C|CR2_uc009xch.2_Silent_p.C51C	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	51	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GGTACAGTTGTTCAGGTACCT	0.423													39	89					0	0	1	0	0
CAMK1G	57172	broad.mit.edu	37	1	209785353	209785353	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:209785353G>A	uc001hhd.2	+	11	1234	c.1132G>A	c.(1132-1134)GGC>AGC	p.G378S	CAMK1G_uc001hhf.3_Missense_Mutation_p.G378S|CAMK1G_uc001hhe.2_Missense_Mutation_p.G378S	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	378						Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CTGCCAGCATGGCCGCCGGCC	0.637													27	75					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214805901	214805901	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:214805901C>T	uc001hkm.2	+	10	1576	c.1402C>T	c.(1402-1404)CAG>TAG	p.Q468*		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	468	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		ACAGGCGTTCCAGGCGAGTCA	0.448													16	28					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215259976	215259976	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:215259976C>T	uc001hkq.2	+	2	481	c.312C>T	c.(310-312)TCC>TCT	p.S104S	KCNK2_uc001hko.2_Silent_p.S100S|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.S89S	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	104							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	CATTCATATCCCAACATTCCT	0.458													24	89					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215914757	215914757	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:215914757C>T	uc001hku.1	-	60	12058	c.11671G>A	c.(11671-11673)GAA>AAA	p.E3891K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3891	Fibronectin type-III 24.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTTGGTTTTTCAGGTGGCATC	0.388										HNSCC(13;0.011)			23	71					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216251523	216251523	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:216251523C>T	uc001hku.1	-	27	5867	c.5480G>A	c.(5479-5481)GGA>GAA	p.G1827E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1827	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGCTGGTCTCCGGACTCCGA	0.423										HNSCC(13;0.011)			29	91					0	0	1	0	0
EPRS	2058	broad.mit.edu	37	1	220160504	220160504	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:220160504C>T	uc001hly.1	-	20	3288	c.3018G>A	c.(3016-3018)CAG>CAA	p.Q1006Q	EPRS_uc010puf.1_Silent_p.Q757Q|EPRS_uc001hlz.1_Silent_p.Q1013Q	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1006					glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TCTTAGGCCCCTGCCCTTCTC	0.393													22	101					0	0	1	0	0
MOSC1	64757	broad.mit.edu	37	1	220971238	220971238	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:220971238C>T	uc001hms.2	+	4	883	c.635C>T	c.(634-636)CCA>CTA	p.P212L	MOSC1_uc001hmt.2_Missense_Mutation_p.P212L	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	212	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GACACCAGCCCATTCTTGATC	0.438													11	44					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284087	223284087	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:223284087G>A	uc001hnv.1	-	4	2733	c.2287C>T	c.(2287-2289)CTT>TTT	p.L763F	TLR5_uc001hnw.1_Missense_Mutation_p.L763F	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	763	Cytoplasmic (Potential).|TIR.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CCATCTCTAAGGAAGTGTCTG	0.488													17	41					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223396630	223396630	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:223396630C>T	uc001hnx.2	-	7	2039	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K	SUSD4_uc001hny.3_Missense_Mutation_p.E469K|SUSD4_uc010puw.1_Missense_Mutation_p.E309K	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	469	Cytoplasmic (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GATGCCACCTCCTCTGCCGTG	0.577													22	58					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223441931	223441931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:223441931C>T	uc001hnx.2	-	3	1082	c.448G>A	c.(448-450)GGA>AGA	p.G150R	SUSD4_uc001hny.3_Missense_Mutation_p.G150R|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Missense_Mutation_p.G150R|SUSD4_uc010pux.1_Missense_Mutation_p.G79R	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	150	Sushi 2.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		ATCTTGAATCCTTCATGACAA	0.423													25	42					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228495064	228495064	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:228495064G>A	uc009xez.1	+	46	12342	c.12298G>A	c.(12298-12300)GTG>ATG	p.V4100M	OBSCN_uc001hsn.2_Missense_Mutation_p.V4100M	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4100	Ig-like 42.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGGGCCGTGGTGCAATGGCT	0.647													15	26					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228521296	228521296	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:228521296C>T	uc009xez.1	+	59	15913	c.15869C>T	c.(15868-15870)CCC>CTC	p.P5290L	OBSCN_uc001hsn.2_Missense_Mutation_p.P5290L|OBSCN_uc001hsr.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5290	Ig-like 50.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TACCCTGCTCCCAGATTATAC	0.602													3	7					0	0	1	0	0
AGT	183	broad.mit.edu	37	1	230841908	230841908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:230841908C>T	uc001hty.3	-	3	1403	c.895G>A	c.(895-897)GAG>AAG	p.E299K	AGT_uc009xfe.2_Missense_Mutation_p.E299K|AGT_uc009xff.2_Missense_Mutation_p.E271K	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	299					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	ACCCAGAACTCCTGGGGCTCG	0.587													14	38					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394789	233394789	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:233394789G>A	uc001hvl.2	-	5	1054	c.819C>T	c.(817-819)TTC>TTT	p.F273F	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	273						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CCCACGGCTGGAAAGAAACGT	0.522													22	43					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233490611	233490611	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:233490611C>T	uc001hvt.3	+	4	1426	c.1165C>T	c.(1165-1167)CCA>TCA	p.P389S	KIAA1804_uc001hvs.1_Missense_Mutation_p.P389S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	389	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TCATATTCGTCCATCGTTTGC	0.388													21	54					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234041378	234041378	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:234041378G>A	uc001hvy.1	+	2	302	c.157G>A	c.(157-159)GAT>AAT	p.D53N		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GATTAAGGAGGATCTGAAATG	0.627													12	49					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240070953	240070953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:240070953G>A	uc001hyp.2	+	5	981	c.202G>A	c.(202-204)GTG>ATG	p.V68M		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	68	Helical; Name=1; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CGTCTGGCAAGTGGTCTTCAT	0.512													10	53					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071803	240071803	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:240071803C>T	uc001hyp.2	+	5	1831	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	351	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	AACTCCGCCTCCTCCGACGAG	0.572													5	9					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588023	247588023	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:247588023G>A	uc001icr.2	+	5	1416	c.1278G>A	c.(1276-1278)ATG>ATA	p.M426I	NLRP3_uc001ics.2_Missense_Mutation_p.M426I|NLRP3_uc001icu.2_Missense_Mutation_p.M426I|NLRP3_uc001icw.2_Missense_Mutation_p.M426I|NLRP3_uc001icv.2_Missense_Mutation_p.M426I|NLRP3_uc010pyw.1_Missense_Mutation_p.M424I|NLRP3_uc001ict.1_Missense_Mutation_p.M424I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	426	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AACAGCAGATGGAGAGTGGCA	0.587													15	54					0	0	1	0	0
C1orf150	148823	broad.mit.edu	37	1	247726896	247726896	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:247726896G>A	uc001idf.2	+	3	139	c.94G>A	c.(94-96)GAA>AAA	p.E32K	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	32	Potential.										0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TTGTAGGCAGGAAATGACTAC	0.358													3	14					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835945	247835945	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:247835945C>T	uc001idi.1	-	1	399	c.399G>A	c.(397-399)ATG>ATA	p.M133I		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TATGGTGGTTCATAATAGTAC	0.473													19	32					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875558	247875558	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:247875558G>A	uc001idj.1	-	1	500	c.500C>T	c.(499-501)TCC>TTC	p.S167F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GCCACAGAAGGACAGGCCACT	0.602													30	68					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875727	247875727	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:247875727C>T	uc001idj.1	-	1	331	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AGGAAGTACTCTGTGCAGCCT	0.498													33	47					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004661	248004661	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248004661C>T	uc001idn.1	-	1	538	c.538G>A	c.(538-540)GAC>AAC	p.D180N		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGCGGGAGGTCGCAGAAGAAA	0.507													23	76					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039443	248039443	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248039443G>A	uc001ido.2	+	6	1161	c.1113G>A	c.(1111-1113)GGG>GGA	p.G371G	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	371	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CAAGAAAGGGGGAAACCACGC	0.562													30	60					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084835	248084835	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248084835C>T	uc010pzc.1	+	1	516	c.516C>T	c.(514-516)ATC>ATT	p.I172I		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CACACGAGATCGATCACTTCT	0.562													9	23					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224085	248224085	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248224085C>T	uc001idx.1	+	1	102	c.102C>T	c.(100-102)TTC>TTT	p.F34F	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTTTCATTTTCCTAATGGCTC	0.388													68	196					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248263565	248263565	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248263565C>T	uc001ids.2	+	3	1225	c.888C>T	c.(886-888)GTC>GTT	p.V296V		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			ATAAGGAAGTCCTGGGGGCTA	0.473													14	45					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248403001	248403001	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:248403001C>T	uc010pzh.1	+	1	771	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTGCTATGTTCATGTACATGA	0.522													29	48					0	0	1	0	0
PGBD2	267002	broad.mit.edu	37	1	249211135	249211135	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:249211135C>T	uc001ifh.2	+	3	499	c.352C>T	c.(352-354)CGT>TGT	p.R118C	PGBD2_uc001ifg.2_Intron|PGBD2_uc009xhd.2_Missense_Mutation_p.R115C	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	118										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			AAGAGATATTCGTCCAGACTT	0.493													11	39					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1043233	1043233	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:1043233C>T	uc001ift.2	+	5	617	c.546C>T	c.(544-546)TCC>TCT	p.S182S	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Silent_p.S66S|GTPBP4_uc010qae.1_Silent_p.S135S	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	182	GTP (Potential).				negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		TTGGGAAGTCCAGCTTCATCA	0.448													46	94					0	0	1	0	0
TUBAL3	79861	broad.mit.edu	37	10	5436040	5436040	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:5436040C>T	uc001ihy.2	-	4	821	c.781G>A	c.(781-783)GAA>AAA	p.E261K	TUBAL3_uc001ihz.2_Missense_Mutation_p.E221K	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	261					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						GTCTGGAATTCAATTAGGTCT	0.507													40	105					0	0	1	0	0
BEND7	222389	broad.mit.edu	37	10	13534629	13534629	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:13534629C>T	uc001imm.2	-	5	960	c.663G>A	c.(661-663)CTG>CTA	p.L221L	BEND7_uc001imo.3_Silent_p.L234L	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	273							protein binding			ovary(1)|breast(1)	2						AAGGTGATTCCAGAACAATGC	0.473													33	79					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	17113537	17113537	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:17113537C>T	uc001ioo.2	-	19	2565	c.2513G>A	c.(2512-2514)GGA>GAA	p.G838E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	838	CUB 4.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGTTCTTTCTCCAGGATACAC	0.453													15	44					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23319537	23319537	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:23319537A>G	uc001irm.3	+	17	2141	c.2058A>G	c.(2056-2058)GGA>GGG	p.G686G	ARMC3_uc010qcv.1_Silent_p.G679G|ARMC3_uc010qcw.1_Silent_p.G423G	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	686							binding				0						aaagcaaaggaaaaaaagaag	0.289													7	8					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24721977	24721977	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:24721977G>A	uc001iru.3	+	4	1010	c.607G>A	c.(607-609)GAA>AAA	p.E203K	KIAA1217_uc001irs.2_Missense_Mutation_p.E123K|KIAA1217_uc001irt.3_Missense_Mutation_p.E203K|KIAA1217_uc010qcy.1_Missense_Mutation_p.E203K|KIAA1217_uc010qcz.1_Missense_Mutation_p.E203K|KIAA1217_uc001irv.1_Missense_Mutation_p.E53K|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	203					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GATGCCGAATGAAATCACAAG	0.483													10	33					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26463421	26463421	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:26463421G>A	uc001isn.2	+	30	4588	c.4228G>A	c.(4228-4230)GAT>AAT	p.D1410N	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1410					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CAAGAAGAAGGATAACAAAGA	0.323													27	54					0	0	1	0	0
GAD2	2572	broad.mit.edu	37	10	26558050	26558050	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:26558050G>A	uc001isp.2	+	9	1426	c.923G>A	c.(922-924)GGG>GAG	p.G308E	GAD2_uc001isq.2_Missense_Mutation_p.G308E	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	308					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCTTCCAGAGGGAAAATGATT	0.403													5	29					0	0	1	0	0
YME1L1	10730	broad.mit.edu	37	10	27436456	27436456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:27436456G>A	uc001iti.2	-	3	492	c.310C>T	c.(310-312)CGT>TGT	p.R104C	YME1L1_uc001itj.2_Intron|YME1L1_uc010qdl.1_Intron|YME1L1_uc009xkv.2_Intron|YME1L1_uc001itk.1_Missense_Mutation_p.R104C	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	104					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						GGTTCTGGACGGAtgtgccag	0.239													3	16					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28224093	28224093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:28224093C>T	uc009xky.2	-	16	2439	c.2341G>A	c.(2341-2343)GGA>AGA	p.G781R	ARMC4_uc010qds.1_Missense_Mutation_p.G306R|ARMC4_uc010qdt.1_Missense_Mutation_p.G473R|ARMC4_uc001itz.2_Missense_Mutation_p.G781R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	781	ARM 5.						binding			ovary(4)|skin(2)	6						CAGCATTCTCCCAAGGCCCCA	0.458													27	56					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273951	28273951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:28273951G>A	uc009xky.2	-	4	670	c.572C>T	c.(571-573)TCA>TTA	p.S191L	ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.S191L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	191							binding			ovary(4)|skin(2)	6						GACTCACAATGAAATATGTTT	0.234													5	12					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315034	30315034	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:30315034G>A	uc001iux.2	-	2	4102	c.4043C>T	c.(4042-4044)CCA>CTA	p.P1348L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P1210L|KIAA1462_uc009xle.1_Missense_Mutation_p.P1348L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1348				P -> R (in Ref. 6; AAH47548).						ovary(4)	4						TTCCTCACCTGGGCACCAGAA	0.483													25	74					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31815683	31815683	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:31815683G>A	uc001ivs.3	+	9	2929	c.2866G>A	c.(2866-2868)GGA>AGA	p.G956R	ZEB1_uc001ivr.3_Missense_Mutation_p.G738R|ZEB1_uc010qee.1_Missense_Mutation_p.G738R|ZEB1_uc010qef.1_Missense_Mutation_p.G738R|ZEB1_uc001ivt.3_Missense_Mutation_p.G738R|ZEB1_uc001ivu.3_Missense_Mutation_p.G957R|ZEB1_uc001ivv.3_Missense_Mutation_p.G936R|ZEB1_uc010qeh.1_Missense_Mutation_p.G889R|ZEB1_uc009xlp.2_Missense_Mutation_p.G940R	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	956					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ATTACATTCTGGAGAAAAGCC	0.383													10	25					0	0	1	0	0
FZD8	8325	broad.mit.edu	37	10	35929907	35929907	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:35929907A>G	uc001iyz.1	-	1	456	c.451T>C	c.(451-453)TAC>CAC	p.Y151H		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	151	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						GTGCGGTTGTAGTCCATGCAC	0.413													4	6					0	0	1	0	0
PPYR1	5540	broad.mit.edu	37	10	47087479	47087479	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:47087479C>T	uc001jee.2	+	3	1115	c.696C>T	c.(694-696)GTC>GTT	p.V232V	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.V232V	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	232	Helical; Name=5; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TCATCCTGGTCTGTTATGCAC	0.602													23	122					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48428932	48428932	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:48428932G>T	uc001jfb.2	-	2	1410	c.954C>A	c.(952-954)TTC>TTA	p.F318L	GDF10_uc009xnp.2_Missense_Mutation_p.F317L|GDF10_uc009xnq.1_Missense_Mutation_p.F318L	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	318					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GGTGCTTGTGGAAGTGCTGTG	0.721													6	20					0.0215528	0.0215987	1	1	0
PCDH15	65217	broad.mit.edu	37	10	55566502	55566502	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:55566502G>A	uc010qhq.1	-	36	5281	c.4886C>T	c.(4885-4887)CCA>CTA	p.P1629L	PCDH15_uc010qhr.1_Missense_Mutation_p.P1624L	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTTCCTTAGTGGCTTCACCGC	0.448										HNSCC(58;0.16)			65	157					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55839143	55839143	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:55839143C>T	uc001jju.1	-	17	2434	c.2039G>A	c.(2038-2040)AGC>AAC	p.S680N	PCDH15_uc010qhq.1_Missense_Mutation_p.S685N|PCDH15_uc010qhr.1_Missense_Mutation_p.S680N|PCDH15_uc010qhs.1_Missense_Mutation_p.S692N|PCDH15_uc010qht.1_Missense_Mutation_p.S687N|PCDH15_uc010qhu.1_Missense_Mutation_p.S680N|PCDH15_uc001jjv.1_Missense_Mutation_p.S658N|PCDH15_uc010qhv.1_Missense_Mutation_p.S680N|PCDH15_uc010qhw.1_Missense_Mutation_p.S643N|PCDH15_uc010qhx.1_Missense_Mutation_p.S609N|PCDH15_uc010qhy.1_Missense_Mutation_p.S685N|PCDH15_uc010qhz.1_Missense_Mutation_p.S680N|PCDH15_uc010qia.1_Missense_Mutation_p.S658N|PCDH15_uc010qib.1_Missense_Mutation_p.S658N|PCDH15_uc001jjw.2_Missense_Mutation_p.S680N	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	680	Cadherin 6.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCGATCAGTGCTTTCCCTGTC	0.428										HNSCC(58;0.16)			60	179					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61926588	61926588	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:61926588C>T	uc001jky.2	-	22	2737	c.2545G>A	c.(2545-2547)GAT>AAT	p.D849N	ANK3_uc001jkx.2_Missense_Mutation_p.D27N|ANK3_uc010qih.1_Missense_Mutation_p.D832N|ANK3_uc001jkz.3_Missense_Mutation_p.D843N|ANK3_uc001jlb.1_Missense_Mutation_p.D378N|ANK3_uc001jlc.1_Missense_Mutation_p.D510N	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	849					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATACCTTCATCATCAGACATA	0.333													10	24					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61965609	61965609	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:61965609G>A	uc001jky.2	-	11	1426	c.1234C>T	c.(1234-1236)CGA>TGA	p.R412*	ANK3_uc010qih.1_Nonsense_Mutation_p.R395*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R406*|ANK3_uc001jlb.1_5'UTR|ANK3_uc001jlc.1_Nonsense_Mutation_p.R73*	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	412	ANK 11.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACTTTAATTCGATTCTTCTTG	0.423													10	26					0	0	1	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585708	66585708	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:66585708C>T	uc009xpm.1	+	1		c.424C>T				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						AGGAGGACTCCCTCGTTGAGA	0.453													8	10					0	0	1	0	0
RUFY2	55680	broad.mit.edu	37	10	70156567	70156567	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:70156567C>A	uc001job.2	-	4	800	c.473G>T	c.(472-474)CGT>CTT	p.R158L	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joc.2_Intron|RUFY2_uc010qiw.1_Missense_Mutation_p.R65L|RUFY2_uc001jod.1_Missense_Mutation_p.R123L|RUFY2_uc009xpv.1_Missense_Mutation_p.R6L|RUFY2_uc001joe.1_Missense_Mutation_p.R123L	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	172	RUN.					nucleus	metal ion binding			ovary(1)	1						AATTAAGCAACGTAAGTAATC	0.368													12	30					0.105934	0.106103	1	1	0
UNC5B	219699	broad.mit.edu	37	10	73039664	73039664	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:73039664G>A	uc001jro.2	+	2	611	c.166G>A	c.(166-168)GAC>AAC	p.D56N	UNC5B_uc001jrp.2_Missense_Mutation_p.D56N	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	56	Ig-like.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						GGAGCCACAGGACGCCTACAT	0.617													13	28					0	0	1	0	0
POLR3A	11128	broad.mit.edu	37	10	79750874	79750874	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:79750874G>A	uc001jzn.2	-	21	2933	c.2839C>T	c.(2839-2841)CTG>TTG	p.L947L		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	947					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TCTGTGGTCAGGATCAGCTCG	0.532													16	31					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81058188	81058188	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:81058188A>C	uc001kaf.2	+	15	2089	c.1517A>C	c.(1516-1518)AAT>ACT	p.N506T	ZMIZ1_uc001kag.2_Missense_Mutation_p.N382T	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	506	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CCTGTGGCAAATTACCCCCAC	0.592													45	115					0	0	1	0	0
PPIF	10105	broad.mit.edu	37	10	81109500	81109500	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:81109500C>T	uc001kai.2	+	3	391	c.306C>T	c.(304-306)TTC>TTT	p.F102F	PPIF_uc001kaj.2_Silent_p.F102F	NM_005729	NP_005720	P30405	PPIF_HUMAN	peptidylprolyl isomerase F precursor	102	PPIase cyclophilin-type.				protein folding	membrane fraction|mitochondrial matrix	peptidyl-prolyl cis-trans isomerase activity			skin(1)	1	all_cancers(46;0.0893)|Breast(12;8.52e-05)|all_epithelial(25;0.00449)|Prostate(51;0.00985)		Epithelial(14;0.00242)|all cancers(16;0.0069)|Colorectal(32;0.229)		Dimethyl sulfoxide(DB01093)|L-Proline(DB00172)	TCCCTTCCTTCATGTGCCAGG	0.388													6	28					0	0	1	0	0
SFTPA2	729238	broad.mit.edu	37	10	81319108	81319108	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:81319108C>T	uc001kal.3	-	3	229	c.132G>A	c.(130-132)AGG>AGA	p.R44R	SFTPA2_uc001kan.3_Silent_p.R44R|SFTPA2_uc001kam.2_RNA	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	44	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CTCTCCCGTCCCTGCCTGGCA	0.622									Pulmonary_Fibrosis_Idiopathic				12	103					0	0	1	0	0
SFTPA1	653509	broad.mit.edu	37	10	81371713	81371713	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:81371713G>A	uc001kap.2	+	3	253	c.132G>A	c.(130-132)AGG>AGA	p.R44R	SFTPA1_uc001kaq.2_Silent_p.R44R|SFTPA1_uc009xry.2_Silent_p.R59R|SFTPA1_uc001kar.2_Silent_p.R44R|SFTPA1_uc010qlt.1_Intron|SFTPA1_uc009xrz.2_Intron|SFTPA1_uc009xsa.2_Silent_p.R44R|SFTPA1_uc009xsf.2_5'Flank	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	44	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TGCCAGGCAGGGACGGGAGAG	0.617													17	49					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85981717	85981717	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:85981717C>T	uc001kcy.2	-	3	1620	c.1612G>A	c.(1612-1614)GAG>AAG	p.E538K	LRIT2_uc010qmc.1_Missense_Mutation_p.E548K	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	538						integral to membrane				ovary(2)	2						TTGTCCCCCTCAGTGTCTATG	0.572													40	84					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88702456	88702456	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:88702456G>A	uc001kea.2	-	6	2212	c.2085C>T	c.(2083-2085)GCC>GCT	p.A695A	MMRN2_uc010qmn.1_Silent_p.A338A|MMRN2_uc009xtb.2_Silent_p.A652A	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	695	Potential.					extracellular space				large_intestine(1)	1						GCGCCAGCCCGGCCAGGGCGG	0.771													4	10					0	0	1	0	0
FAM35A	54537	broad.mit.edu	37	10	88911342	88911342	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:88911342C>T	uc001kei.3	+	3	345	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	77										ovary(2)|skin(2)	4						GTGGTCATTTCTTAGCAAACT	0.343													13	29					0	0	1	0	0
CYP26C1	340665	broad.mit.edu	37	10	94828104	94828104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:94828104G>A	uc010qns.1	+	6	1219	c.1219G>A	c.(1219-1221)GTG>ATG	p.V407M	CYP26C1_uc009xud.2_RNA	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	407					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				GGGCTGGAGCGTGATGTATAG	0.652													13	48					0	0	1	0	0
RBP4	5950	broad.mit.edu	37	10	95360152	95360152	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:95360152C>T	uc001kit.2	-	4	437	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_006744	NP_006735	P02753	RET4_HUMAN	retinol-binding protein 4, plasma precursor	118					cardiac muscle tissue development|embryonic organ morphogenesis|embryonic retina morphogenesis in camera-type eye|embryonic skeletal system development|female genitalia morphogenesis|gluconeogenesis|glucose homeostasis|heart trabecula formation|lung development|maintenance of gastrointestinal epithelium|negative regulation of cardiac muscle cell proliferation|positive regulation of immunoglobulin secretion|positive regulation of insulin secretion|response to retinoic acid|retinol metabolic process|urinary bladder development|uterus development|vagina development	extracellular space	protein binding|retinal binding|retinol binding				0		Colorectal(252;0.122)			Vitamin A(DB00162)	CTACTCACTTCCTTTCTGGAG	0.557													12	61					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95537348	95537348	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:95537348C>T	uc001kjc.3	+	4	741	c.405C>T	c.(403-405)TTC>TTT	p.F135F	LGI1_uc010qnv.1_Intron|LGI1_uc001kjd.3_Silent_p.F135F|LGI1_uc009xui.2_Intron|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	135	LRR 2.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GACATACTTTCCGGGGACTAA	0.323													9	21					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95720860	95720860	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:95720860C>T	uc009xuj.2	-	1	813	c.294G>A	c.(292-294)TGG>TGA	p.W98*		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CAAATAGCTCCCAGAAGTAGC	0.502													21	55					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447961	96447961	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:96447961G>A	uc001kjv.3	+	3	737	c.411G>A	c.(409-411)GGG>GGA	p.G137G	CYP2C18_uc001kjw.3_Silent_p.G137G|CYP2C19_uc009xus.1_Silent_p.G2G|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	137					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TTGGGATGGGGAAGAGGAGCA	0.473													17	48					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	97956719	97956719	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:97956719C>T	uc001kls.3	-	16	1374	c.1196G>A	c.(1195-1197)CGA>CAA	p.R399Q	BLNK_uc001kme.3_Missense_Mutation_p.R294Q|BLNK_uc001klt.3_Missense_Mutation_p.R290Q|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Intron|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_Intron|BLNK_uc001klx.3_Missense_Mutation_p.R376Q|BLNK_uc001kly.3_Intron|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Intron|BLNK_uc001kmb.3_Missense_Mutation_p.R195Q|BLNK_uc001kmc.3_Intron|BLNK_uc001kmd.3_Missense_Mutation_p.R317Q|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	399	SH2.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		TTCAATAAATCGCACAGGAAT	0.333													13	31					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98416637	98416637	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:98416637G>A	uc001kmq.2	-	3	613	c.485C>T	c.(484-486)TCC>TTC	p.S162F	PIK3AP1_uc001kmp.2_5'UTR	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	162						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		CTTCGAGTAGGAAACAACCTT	0.572													18	33					0	0	1	0	0
ARHGAP19	84986	broad.mit.edu	37	10	98985884	98985884	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:98985884G>A	uc001knb.2	-	12	1509	c.1480C>T	c.(1480-1482)CTC>TTC	p.L494F	ARHGAP19_uc001kmy.2_Intron|ARHGAP19_uc001kna.2_Missense_Mutation_p.L485F|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.L465F|ARHGAP19_uc009xvk.2_Missense_Mutation_p.L288F	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	494					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		ATCCTTCAGAGAAATCCTAGG	0.413													7	18					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102055947	102055947	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:102055947A>G	uc001kqx.1	-	7	1671	c.1288T>C	c.(1288-1290)TTC>CTC	p.F430L	PKD2L1_uc009xwm.1_Missense_Mutation_p.F383L	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	430	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		AAGGCGAGGAACTCAAAGTCT	0.532													22	50					0	0	1	0	0
TLX1	3195	broad.mit.edu	37	10	102896658	102896658	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:102896658G>A	uc001ksw.2	+	3	1219	c.981G>A	c.(979-981)TCG>TCA	p.S327S		NM_005521	NP_005512	P31314	TLX1_HUMAN	T-cell leukemia homeobox 1	327						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1				Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		CGGTGGCGTCGGCCTGCGAGT	0.647			T	TRB@|TRD@	T-ALL								12	21					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105801078	105801078	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:105801078C>T	uc001kxr.2	-	38	2799	c.2630G>A	c.(2629-2631)GGA>GAA	p.G877E		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	877	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GCCTCGGGGTCCTGGTGGGCC	0.642													13	61					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105830236	105830236	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:105830236G>A	uc001kxr.2	-	9	724	c.555C>T	c.(553-555)ATC>ATT	p.I185I	COL17A1_uc010qqv.1_Silent_p.I169I|COL17A1_uc009xxp.1_Silent_p.I185I	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	185	Cytoplasmic (Potential).|Nonhelical region (NC16).|Necessary for interaction with DST and for the recruitment of DST to hemidesmosome.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CTTTCTTGGGGATGGGGAGTG	0.507													30	55					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106152112	106152112	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:106152112C>T	uc001kyh.2	+	10	1621	c.1487C>T	c.(1486-1488)TCA>TTA	p.S496L		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	496	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GCTGTGAGATCAGACAGAAAT	0.299													30	47					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106209924	106209924	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:106209924G>A	uc001kyh.2	+	17	2606	c.2472G>A	c.(2470-2472)AAG>AAA	p.K824K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	824	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ATTTAAAGAAGAAATACCTCG	0.313													33	63					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106865240	106865240	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:106865240C>T	uc001kyi.1	+	7	1406	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	393	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACATCAGTTCCCTGGTTGTCC	0.498													32	81					0	0	1	0	0
KCNK18	338567	broad.mit.edu	37	10	118957035	118957035	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:118957035C>T	uc010qsr.1	+	1	36	c.36C>T	c.(34-36)TGC>TGT	p.C12C		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	12	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CCAGGAGATGCTGCCCAGAGG	0.632													17	44					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123843413	123843413	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:123843413G>A	uc001lfv.2	+	4	1758	c.1398G>A	c.(1396-1398)GTG>GTA	p.V466V	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.V466V|TACC2_uc010qtv.1_Silent_p.V466V	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	466						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAGGGTTGGTGGGACTGGAGA	0.572													40	87					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123845850	123845850	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:123845850G>A	uc001lfv.2	+	4	4195	c.3835G>A	c.(3835-3837)GAA>AAA	p.E1279K	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.E1279K|TACC2_uc010qtv.1_Missense_Mutation_p.E1279K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1279						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACTTGCCTTGGAAAATGCTGC	0.602													13	35					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123846885	123846886	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:123846885_123846886CC>TT	uc001lfv.2	+	4	5230_5231	c.4870_4871CC>TT	c.(4870-4872)CCA>TTA	p.P1624L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P1624L|TACC2_uc010qtv.1_Missense_Mutation_p.P1624L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1624						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CACAGGGGTTCCAGGACATGTG	0.574													7	43					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124266289	124266289	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:124266289C>T	uc001lgj.2	+	4	988	c.860C>T	c.(859-861)TCC>TTC	p.S287F		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	287	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				AGCCCGTTTTCCCTTCAAAAC	0.617													25	42					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124458859	124458859	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:124458859C>T	uc001lgn.2	-	2	278	c.246G>A	c.(244-246)GAG>GAA	p.E82E		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	82										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TTACTAGGATCTCTTTTTCCA	0.488													17	29					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125526566	125526566	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:125526566C>T	uc001lhk.1	-	10	1727	c.1402G>A	c.(1402-1404)GAT>AAT	p.D468N	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	468					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TTCTGTCGATCCTCTGCCTCC	0.512													18	50					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129906504	129906504	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:129906504C>T	uc001lke.2	-	13	3795	c.3600G>A	c.(3598-3600)CTG>CTA	p.L1200L	MKI67_uc001lkf.2_Silent_p.L840L|MKI67_uc009yav.1_Silent_p.L775L|MKI67_uc009yaw.1_Silent_p.L350L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1200	16 X 122 AA approximate repeats.|2.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AAGTTCCTGCCAGGTCCAGTT	0.502													53	108					0	0	1	0	0
DPYSL4	10570	broad.mit.edu	37	10	134017385	134017385	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:134017385C>T	uc009ybb.2	+	13	1735	c.1581C>T	c.(1579-1581)TCC>TCT	p.S527S		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	527					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GCAAGATCTCCGTCCCTCCTG	0.677													29	63					0	0	1	0	0
INPP5A	3632	broad.mit.edu	37	10	134521849	134521849	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:134521849G>A	uc001llp.2	+	7	755	c.507G>A	c.(505-507)ACG>ACA	p.T169T	INPP5A_uc001llo.1_Silent_p.T169T|INPP5A_uc001llq.2_Silent_p.T121T	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	169				PQDYFPECKWSRKGFIRTRWC -> RRLLPRVQMVKKRLHP DEVV (in Ref. 5; CAA83500).	cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		TCATCCGGACGAGGTGGTGCA	0.468													6	22					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135000137	135000137	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr10:135000137C>T	uc001llz.1	+	6	1286	c.1285C>T	c.(1285-1287)CCA>TCA	p.P429S	KNDC1_uc001lma.1_Missense_Mutation_p.P364S	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	429					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TGAGAGAATTCCAGAAGGAGC	0.662													3	21					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	403156	403156	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:403156C>T	uc001lpc.2	+	9	1892	c.1816C>T	c.(1816-1818)CAG>TAG	p.Q606*		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	606	ARM 6.				cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTGGAGCCCCCAGATCGTGGG	0.652													5	5					0	0	1	0	0
PTDSS2	81490	broad.mit.edu	37	11	489449	489449	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:489449C>T	uc001lpj.2	+	9	1080	c.904C>T	c.(904-906)CGC>TGC	p.R302C		NM_030783	NP_110410	Q9BVG9	PTSS2_HUMAN	phosphatidylserine synthase 2	302	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;2.76e-26)|Epithelial(43;2.56e-25)|OV - Ovarian serous cystadenocarcinoma(40;7.54e-20)|BRCA - Breast invasive adenocarcinoma(625;8.76e-05)|Lung(200;0.0407)|LUSC - Lung squamous cell carcinoma(625;0.0735)	Phosphatidylserine(DB00144)	CAGCTGGGTTCGCTTCGAGTG	0.622													10	24					0	0	1	0	0
HRAS	3265	broad.mit.edu	37	11	534286	534286	+	Missense_Mutation	SNP	C	T	T	rs104894228		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:534286C>T	uc001lpv.2	-	2	225	c.37G>A	c.(37-39)GGT>AGT	p.G13S	HRAS_uc010qvw.1_Missense_Mutation_p.G13S|HRAS_uc010qvx.1_Missense_Mutation_p.G13S|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	13	GTP.		G -> D (in FCSS).|G -> C (in FCSS).		activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.G13R(34)|p.G13V(10)|p.G13D(9)|p.G13S(9)|p.G13C(6)|p.G13G(1)|p.G12_G13insAG(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	TTGCCCACACCGCCGGCGCCC	0.642		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			7	27					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	601608	601609	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:601608_601609CC>TT	uc001lqe.2	+	10	1190_1191	c.1059_1060CC>TT	c.(1057-1062)ACCCCG>ACTTCG	p.P354S	PHRF1_uc010qwc.1_Missense_Mutation_p.P354S|PHRF1_uc010qwd.1_Missense_Mutation_p.P353S|PHRF1_uc010qwe.1_Missense_Mutation_p.P350S|PHRF1_uc009ybz.1_Missense_Mutation_p.P145S	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	354	Arg-rich.						RNA polymerase binding|zinc ion binding				0						GAAAGAAAACCCCGTCCGGACC	0.505													14	45					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1099233	1099233	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:1099233G>A	uc001lsx.1	+	41	14325	c.14298G>A	c.(14296-14298)AGG>AGA	p.R4766R		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4766						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CATCTCACAGGGAGTACCAGG	0.627													11	53					0	0	1	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629276	1629276	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:1629276G>A	uc001ltw.1	-	1	418	c.340C>T	c.(340-342)CGT>TGT	p.R114C		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	114	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GAGCCCCCACGAAATCCACAG	0.652													34	56					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4673854	4673854	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4673854C>A	uc001lzi.3	+	2	242	c.98C>A	c.(97-99)CCA>CAA	p.P33Q		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGGCCTTCCCATTGTGCTCC	0.463													34	70					1.58521e-26	1.61439e-26	1	1	0
OR51F1	256892	broad.mit.edu	37	11	4790275	4790276	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4790275_4790276GG>AA	uc010qyl.1	-	1	872_873	c.872_873CC>TT	c.(871-873)CCC>CTT	p.P291L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	291						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGTCGATGATGGGGTTGAGCAC	0.455													6	51					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790760	4790760	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4790760C>T	uc010qyl.1	-	1	388	c.388G>A	c.(388-390)GAC>AAC	p.D130N		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	130						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTCAGAGGGTCACAGATGGCC	0.408													16	43					0	0	1	0	0
OR51F2	119694	broad.mit.edu	37	11	4843555	4843555	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4843555C>T	uc010qyn.1	+	1	940	c.940C>T	c.(940-942)CAA>TAA	p.Q314*		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAAGCAGATTCAAAAGGCCAT	0.373													27	74					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4869718	4869718	+	Missense_Mutation	SNP	G	A	A	rs115882083	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4869718G>A	uc010qyo.1	-	1	721	c.721C>T	c.(721-723)CGC>TGC	p.R241C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCTTCCAGCGATCCTCTCTG	0.522													18	41					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4870027	4870027	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:4870027G>A	uc010qyo.1	-	1	412	c.412C>T	c.(412-414)CTC>TTC	p.L138F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGGTAGTGGAGAGGTCGGCAG	0.522													35	99					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5021041	5021041	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5021041C>T	uc010qyu.1	+	1	829	c.829C>T	c.(829-831)CTC>TTC	p.L277F		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTCCACATCCTCATGGCAGA	0.453													17	40					0	0	1	0	0
OR52A4	390053	broad.mit.edu	37	11	5142422	5142422	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5142422C>T	uc001lzz.1	-	1	387	c.387G>A	c.(385-387)GCG>GCA	p.A129A	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		GATAACAGATCGCTACACAGC	0.463													9	24					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5173466	5173466	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5173466G>A	uc010qyy.1	-	1	134	c.134C>T	c.(133-135)TCC>TTC	p.S45F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGAAGCAAGGAATTTCCAAT	0.468													15	40					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443763	5443763	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5443763T>C	uc010qzd.1	+	1	333	c.333T>C	c.(331-333)TTT>TTC	p.F111F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATTCTCCTTTATGGAGTCTT	0.493													38	69					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5799163	5799163	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5799163C>T	uc010qzn.1	-	1	702	c.702G>A	c.(700-702)GCG>GCA	p.A234A	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		AGAGGCTGATCGCTGCCTTGA	0.438													23	41					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5841772	5841772	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5841772C>T	uc010qzp.1	+	1	207	c.207C>T	c.(205-207)TCC>TCT	p.S69S	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCTGCTCTCCTTCACTGATG	0.537													46	101					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5905976	5905976	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:5905976G>A	uc010qzs.1	+	1	454	c.454G>A	c.(454-456)GGA>AGA	p.G152R	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGGTTGTTGGAAGAAATTT	0.463													27	69					0	0	1	0	0
APBB1	322	broad.mit.edu	37	11	6424635	6424635	+	Splice_Site	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:6424635C>T	uc001mdb.1	-	5	1055	c.955_splice	c.e5-1	p.D319_splice	APBB1_uc001mcz.1_5'Flank|APBB1_uc001mdd.3_Splice_Site_p.D99_splice|APBB1_uc001mda.2_Splice_Site|APBB1_uc001mdc.1_Splice_Site_p.D319_splice|APBB1_uc010rab.1_5'Flank|APBB1_uc010rac.1_5'Flank|APBB1_uc010rad.1_5'Flank|APBB1_uc010rae.1_Splice_Site_p.D84_splice|APBB1_uc010raf.1_Splice_Site_p.D60_splice|APBB1_uc009yfa.2_Splice_Site_p.D60_splice|APBB1_uc009yey.2_Splice_Site_p.D60_splice|APBB1_uc010rag.1_Splice_Site_p.D60_splice|APBB1_uc009yfb.2_Splice_Site_p.D60_splice|APBB1_uc001mde.2_Splice_Site_p.D60_splice|APBB1_uc010rah.1_Splice_Site_p.D60_splice	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,						apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		TGGGTTCATCCTTGGGAAGGG	0.547													17	36					0	0	1	0	0
APBB1	322	broad.mit.edu	37	11	6424912	6424912	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:6424912G>A	uc001mdb.1	-	3	962	c.862C>T	c.(862-864)CCC>TCC	p.P288S	APBB1_uc001mcz.1_5'Flank|APBB1_uc001mdd.3_Missense_Mutation_p.P68S|APBB1_uc001mda.2_Intron|APBB1_uc001mdc.1_Missense_Mutation_p.P288S|APBB1_uc010rab.1_5'Flank|APBB1_uc010rac.1_5'Flank|APBB1_uc010rad.1_5'Flank|APBB1_uc010rae.1_Missense_Mutation_p.P53S|APBB1_uc010raf.1_Missense_Mutation_p.P29S|APBB1_uc009yfa.2_Missense_Mutation_p.P29S|APBB1_uc009yey.2_Missense_Mutation_p.P29S|APBB1_uc010rag.1_Missense_Mutation_p.P29S|APBB1_uc009yfb.2_Missense_Mutation_p.P29S|APBB1_uc001mde.2_Missense_Mutation_p.P29S|APBB1_uc010rah.1_Missense_Mutation_p.P29S	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	288					apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		CCCTGTGAGGGGGAGGCCCGG	0.652													23	49					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6646055	6646055	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:6646055G>A	uc001mem.1	-	20	7601	c.7191C>T	c.(7189-7191)TCC>TCT	p.S2397S		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	2397	Cadherin 23.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGCAGAGACGGAGAGAATGG	0.557													5	27					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7021121	7021121	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:7021121T>C	uc001mfa.2	-	3	2096	c.1793A>G	c.(1792-1794)CAC>CGC	p.H598R	ZNF214_uc010ray.1_Missense_Mutation_p.H598R|ZNF214_uc009yfh.1_Missense_Mutation_p.H598R	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	598					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		ATGATTATTGTGAAGATGTGA	0.323													14	30					0	0	1	0	0
OR5P2	120065	broad.mit.edu	37	11	7817623	7817623	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:7817623C>T	uc001mfp.1	-	1	867	c.867G>A	c.(865-867)AGG>AGA	p.R289R		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	289	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCTCCTTGTTCCTGAGGCTGT	0.403													26	70					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7984847	7984847	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:7984847C>T	uc001mfv.1	-	1	213	c.196G>A	c.(196-198)GGA>AGA	p.G66R		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	66	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCTTTTCTCCATACTTTGAA	0.532													20	58					0	0	1	0	0
DENND5A	23258	broad.mit.edu	37	11	9202503	9202503	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:9202503A>G	uc001mhl.2	-	6	1521	c.1266T>C	c.(1264-1266)CCT>CCC	p.P422P	DENND5A_uc010rbw.1_Silent_p.P422P|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	422										liver(1)	1						GATTCCCTTCAGGGGGAATTC	0.517													23	73					0	0	1	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17191264	17191264	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:17191264C>T	uc001mmq.3	-	1	91	c.25G>A	c.(25-27)GGA>AGA	p.G9R	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Missense_Mutation_p.G9R|PIK3C2A_uc009ygv.1_Missense_Mutation_p.G9R	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	9	Interaction with clathrin.				cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TCTTTAAATCCGCTGTTGCTA	0.393													15	47					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955510	18955510	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:18955510G>A	uc001mpg.2	-	1	1040	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	274	Helical; Name=7; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGGAGCCCACGAAGAAGTAAA	0.512													20	44					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20057522	20057522	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:20057522C>T	uc010rdm.1	+	13	3216	c.2855C>T	c.(2854-2856)TCC>TTC	p.S952F	NAV2_uc001mpp.2_Missense_Mutation_p.S865F|NAV2_uc001mpr.3_Missense_Mutation_p.S929F|NAV2_uc001mpt.2_Missense_Mutation_p.S15F|NAV2_uc009yhx.2_Missense_Mutation_p.S15F|NAV2_uc009yhy.1_5'UTR	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	952						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GACAGCAGCTCCGTCAGCAGC	0.542													6	38					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	25071642	25071642	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:25071642G>A	uc001mqs.2	+	10	1058	c.824G>A	c.(823-825)GGA>GAA	p.G275E	LUZP2_uc009yif.2_Missense_Mutation_p.G189E|LUZP2_uc009yig.2_Missense_Mutation_p.G233E	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	275						extracellular region				ovary(1)|skin(1)	2						ACAAAGGAAGGAAATCCAAGT	0.368													13	38					0	0	1	0	0
LGR4	55366	broad.mit.edu	37	11	27412653	27412653	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:27412653G>A	uc001mrj.3	-	4	874	c.389C>T	c.(388-390)GCT>GTT	p.A130V	LGR4_uc001mrk.3_Missense_Mutation_p.A106V	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	130	LRR 4.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						AGACTGCAAAGCACTCAGCCC	0.383													13	30					0	0	1	0	0
WT1	7490	broad.mit.edu	37	11	32410715	32410715	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:32410715G>T	uc001mtn.1	-	10	1639	c.1443C>A	c.(1441-1443)CCC>CCA	p.P481P	WT1_uc001mtl.1_Silent_p.P266P|WT1_uc001mtm.1_Silent_p.P252P|WT1_uc001mto.1_Silent_p.P478P|WT1_uc001mtp.1_Silent_p.P464P|WT1_uc001mtq.1_Silent_p.P461P|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	413					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding		EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			GACAGCTGAAGGGCTTTTCAC	0.483			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				15	59					1.2644e-06	1.27525e-06	1	1	0
TRAF6	7189	broad.mit.edu	37	11	36511831	36511831	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:36511831G>A	uc001mwr.1	-	8	1466	c.1126C>T	c.(1126-1128)CAT>TAT	p.H376Y	uc001mwq.1_5'Flank|TRAF6_uc001mws.1_Missense_Mutation_p.H376Y	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	376	MATH.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				CCAGGGCTATGAATCACAACA	0.443													19	61					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137207	40137207	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:40137207G>A	uc001mxa.1	-	2	2600	c.636C>T	c.(634-636)ATC>ATT	p.I212I	LRRC4C_uc001mxc.1_Silent_p.I208I|LRRC4C_uc001mxd.1_Silent_p.I208I|LRRC4C_uc001mxb.1_Silent_p.I208I	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	212	LRR 6.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGAGGTTAGGGATTTCCCGAA	0.458													20	40					0	0	1	0	0
CREB3L1	90993	broad.mit.edu	37	11	46321636	46321636	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:46321636G>A	uc001ncf.2	+	2	688	c.253G>A	c.(253-255)GAG>AAG	p.E85K		NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	85	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		CATCCAGGCGGAGCACAGCTA	0.587			T	FUS	myxofibrosarcoma								9	10					0	0	1	0	0
ARFGAP2	84364	broad.mit.edu	37	11	47189579	47189579	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:47189579G>A	uc001ndt.2	-	12	1101	c.1086C>T	c.(1084-1086)CCC>CCT	p.P362P	ARFGAP2_uc010rha.1_Silent_p.P93P|ARFGAP2_uc010rhb.1_Silent_p.P334P|ARFGAP2_uc001ndu.2_Silent_p.P226P|ARFGAP2_uc010rhc.1_Silent_p.P93P	NM_032389	NP_115765	Q8N6H7	ARFG2_HUMAN	ADP-ribosylation factor GTPase activating	362	Required for interaction with coatomer.				protein transport|regulation of ARF GTPase activity|vesicle-mediated transport	Golgi membrane|nucleolus|plasma membrane	ARF GTPase activator activity|zinc ion binding			ovary(1)	1						CTAAGGAAAAGGGATTGTCCT	0.517													15	33					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285719	48285719	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:48285719C>T	uc010rht.1	+	1	307	c.307C>T	c.(307-309)CAT>TAT	p.H103Y		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GTTTTCCCTCCATTTCTTTGG	0.498													17	30					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347047	48347047	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:48347047C>T	uc010rhv.1	+	1	555	c.555C>T	c.(553-555)CTC>CTT	p.L185L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	158	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGTTCAGCTCCTCCTGGTCC	0.527													19	82					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49208219	49208219	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:49208219C>T	uc001ngy.2	-	5	877	c.616G>A	c.(616-618)GGG>AGG	p.G206R	FOLH1_uc001ngz.2_Missense_Mutation_p.G206R|FOLH1_uc009yly.2_Missense_Mutation_p.G191R|FOLH1_uc009ylz.2_Missense_Mutation_p.G191R|FOLH1_uc009yma.2_5'UTR	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	206	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AAAACTTTCCCATATCTGGCA	0.338													17	39					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51516172	51516172	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:51516172G>A	uc010ric.1	+	1	891	c.891G>A	c.(889-891)AGG>AGA	p.R297R		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGCCATCAGGAAATTGTGTA	0.289													9	39					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55135756	55135756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:55135756C>T	uc010rif.1	+	1	397	c.397C>T	c.(397-399)CAT>TAT	p.H133Y		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTTATGGATCATTTATTTGC	0.408													44	109					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322780	55322780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:55322780C>T	uc010rig.1	+	1	998	c.998C>T	c.(997-999)CCC>CTC	p.P333L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATCTTAAATCCCTTGCTCAAT	0.373										HNSCC(20;0.049)			19	76					0	0	1	0	0
OR5J2	282775	broad.mit.edu	37	11	55944103	55944103	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:55944103G>A	uc010rjb.1	+	1	10	c.10G>A	c.(10-12)GAT>AAT	p.D4N		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					TATGGCTGATGATAATTTTAC	0.318													19	56					0	0	1	0	0
OR5M8	219484	broad.mit.edu	37	11	56258728	56258728	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:56258728C>T	uc001nix.1	-	1	119	c.119G>A	c.(118-120)GGG>GAG	p.G40E		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					GCCAAGGTTCCCTGCCACCGT	0.517													28	106					0	0	1	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431219	56431219	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:56431219G>A	uc010rjm.1	+	1	58	c.58G>A	c.(58-60)GAC>AAC	p.D20N		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATCACCCAGGACCCTCAGAT	0.398													22	78					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57088068	57088068	+	Silent	SNP	G	A	A	rs150087591		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:57088068G>A	uc001njr.2	-	2	525	c.213C>T	c.(211-213)CCC>CCT	p.P71P	TNKS1BP1_uc001njs.2_Silent_p.P71P|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	71	Arg/Glu/Lys/Pro-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				ACTCAGCCAGGGGACCCCGGG	0.682													11	16					0	0	1	0	0
PRG3	10394	broad.mit.edu	37	11	57147028	57147028	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:57147028G>A	uc001njv.1	-	3	424	c.314C>T	c.(313-315)CCA>CTA	p.P105L		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	105					basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						CTTGCACCTTGGACTTCCCTG	0.532													27	81					0	0	1	0	0
OR10Q1	219960	broad.mit.edu	37	11	57996128	57996128	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:57996128C>T	uc010rkd.1	-	1	220	c.220G>A	c.(220-222)GAA>AAA	p.E74K		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				TAGCAGAGTTCCAGGAAAGAC	0.537													16	50					0	0	1	0	0
OR4D11	219986	broad.mit.edu	37	11	59271650	59271650	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:59271650C>T	uc001noa.1	+	1	602	c.602C>T	c.(601-603)TCC>TTC	p.S201F		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGATGATTTCCAACAATGGC	0.502													35	94					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60704128	60704128	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:60704128C>T	uc001nqj.2	+	11	3014	c.2821C>T	c.(2821-2823)CCT>TCT	p.P941S	TMEM132A_uc001nqi.2_Missense_Mutation_p.P942S|TMEM132A_uc001nqm.2_Missense_Mutation_p.P151S	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	941	Cytoplasmic (Potential).|Confers cellular localization similar to full-length form (By similarity).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCCTGGCCCTCCTGGGGGCAC	0.716													3	18					0	0	1	0	0
DAGLA	747	broad.mit.edu	37	11	61490981	61490981	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:61490981G>A	uc001nsa.2	+	5	596	c.485G>A	c.(484-486)CGC>CAC	p.R162H		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	162	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CCCACGGGCCGCACCTTTGTC	0.617													4	95					0	0	1	0	0
SNHG1	23642	broad.mit.edu	37	11	62620288	62620288	+	RNA	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:62620288T>A	uc001nvp.2	-	8		c.372A>T			SNHG1_uc001nvo.2_RNA|SNHG1_uc001nvq.2_RNA|SNHG1_uc001nvs.2_RNA|SNHG1_uc001nvr.2_RNA|SNHG1_uc001nvt.2_RNA|SNHG1_uc001nvu.2_RNA					Homo sapiens cDNA FLJ38530 fis, clone HCHON2001039.												0						CCTACCATTTTTTATACACCT	0.299													9	18					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62752106	62752106	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:62752106G>A	uc001nwk.2	-	1	364	c.57C>T	c.(55-57)ATC>ATT	p.I19I	SLC22A6_uc001nwl.2_Silent_p.I19I|SLC22A6_uc001nwj.2_Silent_p.I19I|SLC22A6_uc001nwm.2_Silent_p.I19I	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	19	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						GGGTGACCTGGATCTGCTGGA	0.652													8	15					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62931375	62931375	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:62931375G>A	uc001nwr.1	-	9	1565	c.1565C>T	c.(1564-1566)CCT>CTT	p.P522L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	522	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GTCAAGAAGAGGCTGGTTCCT	0.507													40	76					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64427964	64427964	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:64427964G>A	uc001oar.2	-	12	2668	c.2229C>T	c.(2227-2229)ATC>ATT	p.I743I	NRXN2_uc001oas.2_Silent_p.I712I|NRXN2_uc001oaq.2_Silent_p.I410I	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TAGGCAGCATGATCTTCATGT	0.602													15	32					0	0	1	0	0
MEN1	4221	broad.mit.edu	37	11	64573726	64573727	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:64573726_64573727CC>TT	uc001obj.2	-	7	1114_1115	c.1041_1042GG>AA	c.(1039-1044)GCGGAC>GCAAAC	p.D348N	MEN1_uc001obk.2_Missense_Mutation_p.D348N|MEN1_uc001obl.2_Missense_Mutation_p.D308N|MEN1_uc001obm.2_Missense_Mutation_p.D343N|MEN1_uc001obn.2_Missense_Mutation_p.D348N|MEN1_uc001obo.2_Missense_Mutation_p.D348N|MEN1_uc001obp.2_Missense_Mutation_p.D343N|MEN1_uc001obq.2_Missense_Mutation_p.D348N|MEN1_uc001obr.2_Missense_Mutation_p.D348N	NM_130800	NP_570712	O00255	MEN1_HUMAN	menin isoform 1	348	Interaction with FANCD2.				DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			parathyroid(105)|pancreas(64)|gastrointestinal_tract_(site_indeterminate)(15)|small_intestine(13)|lung(9)|pituitary(7)|NS(7)|adrenal_gland(5)|soft_tissue(4)|central_nervous_system(4)|thymus(2)|stomach(1)|retroperitoneum(1)|skin(1)	238						GTGGCCGTGTCCGCCCAGGCCT	0.594			D|Mis|N|F|S		parathyroid tumors|Pancreatic neuroendocrine tumors	parathyroid adenoma|pituitary adenoma|pancreatic islet cell|carcinoid			Hyperparathyroidism_Familial_Isolated|Multiple_Endocrine_Neoplasia_type_1		OREG0004014	type=REGULATORY REGION|Gene=MEN1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	46					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64602559	64602559	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:64602559C>T	uc001obs.3	-	17	2020	c.2020G>A	c.(2020-2022)GAG>AAG	p.E674K		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	674	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CAGTTGCTCTCCGTCTCCCGC	0.701													10	24					0	0	1	0	0
SLC22A20	440044	broad.mit.edu	37	11	65004214	65004214	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:65004214C>T	uc010roc.1	+	10	1429	c.1426C>T	c.(1426-1428)CTG>TTG	p.L476L	SLC22A20_uc001odi.3_RNA	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	476	Cytoplasmic (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						GACGGCGCCCCTGGTTACCAC	0.662													27	62					0	0	1	0	0
CDC42EP2	10435	broad.mit.edu	37	11	65088624	65088624	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:65088624C>T	uc001odl.2	+	2	705	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	85					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						CCTTCCAGTTCACCCGCACCG	0.657													15	16					0	0	1	0	0
MALAT1	378938	broad.mit.edu	37	11	65266682	65266682	+	RNA	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:65266682A>T	uc010roh.1	+	1		c.1450A>T			MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTTTTAACGTAATTTTAATAG	0.274													3	17					0	0	1	0	0
PCNXL3	399909	broad.mit.edu	37	11	65402909	65402909	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:65402909G>A	uc001oey.2	+	31	5174	c.5174G>A	c.(5173-5175)CGA>CAA	p.R1725Q	PCNXL3_uc001oez.2_Missense_Mutation_p.R612Q	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1725						integral to membrane					0						CTCAGCTTCCGAGTCATCAAG	0.662													5	14					0	0	1	0	0
RIN1	9610	broad.mit.edu	37	11	66100171	66100171	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:66100171G>A	uc001ohn.1	-	10	2055	c.1928C>T	c.(1927-1929)ACC>ATC	p.T643I	RIN1_uc010roy.1_Missense_Mutation_p.T274I|RIN1_uc009yrd.1_Missense_Mutation_p.T336I|RIN1_uc010roz.1_Missense_Mutation_p.T538I|RIN1_uc010rpa.1_Missense_Mutation_p.T477I	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	643	Ras and 14-3-3 protein binding region.|Ras-associating.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CACGGCCAGGGTCTTGGAGGT	0.592													32	84					0	0	1	0	0
BBS1	582	broad.mit.edu	37	11	66293621	66293621	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:66293621C>T	uc001oij.1	+	12	1150	c.1138C>T	c.(1138-1140)CGG>TGG	p.R380W	BBS1_uc001oii.1_Missense_Mutation_p.R417W|BBS1_uc010rpg.1_Missense_Mutation_p.R283W|BBS1_uc001oik.1_Missense_Mutation_p.R304W|BBS1_uc001oil.1_Missense_Mutation_p.R251W|ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron|BBS1_uc010rph.1_Missense_Mutation_p.R48W	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	380					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						TTGCTTTGGCCGGTACGGGCG	0.562									Bardet-Biedl_syndrome				16	52					0	0	1	0	0
ACTN3	89	broad.mit.edu	37	11	66329733	66329733	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:66329733G>A	uc001oio.1	+	20	2346	c.2328G>A	c.(2326-2328)CGG>CGA	p.R776R	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	776	1; possibly ancestral.|EF-hand 1.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						TACAGAAGCAGAATGGGATGA	0.592													28	84					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66473159	66473159	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:66473159C>T	uc001ojd.2	-	13	1875	c.1803G>A	c.(1801-1803)GGG>GGA	p.G601G		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	601	Spectrin 3.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCTCACCTTTCCCTGGGTTGC	0.647													9	23					0	0	1	0	0
MRGPRF	116535	broad.mit.edu	37	11	68772911	68772911	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:68772911G>A	uc001ooo.3	-	3	1234	c.867C>T	c.(865-867)ATC>ATT	p.I289I	MRGPRF_uc001oop.3_Silent_p.I289I	NM_001098515	NP_001091985	Q96AM1	MRGRF_HUMAN	MAS-related GPR, member F	289	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGAAGTAGACGATGGGCTTGG	0.662													4	7					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331778	70331778	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:70331778C>T	uc001oqc.2	-	21	4698	c.4620G>A	c.(4618-4620)ATG>ATA	p.M1540I	SHANK2_uc010rqn.1_Missense_Mutation_p.M952I|SHANK2_uc001opz.2_Missense_Mutation_p.M945I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1161					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GTTTGTCAACCATAAATGCTT	0.483													19	66					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331897	70331897	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:70331897C>T	uc001oqc.2	-	21	4579	c.4501G>A	c.(4501-4503)GAC>AAC	p.D1501N	SHANK2_uc010rqn.1_Missense_Mutation_p.D913N|SHANK2_uc001opz.2_Missense_Mutation_p.D906N|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1122					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			AGGTGGTGGTCGCTGCTACTC	0.582													15	37					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71903350	71903350	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:71903350G>A	uc001orz.1	+	3	271	c.133G>A	c.(133-135)GAA>AAA	p.E45K	FOLR1_uc001osa.1_Missense_Mutation_p.E45K|FOLR1_uc001osb.1_Missense_Mutation_p.E45K|FOLR1_uc001osc.1_Missense_Mutation_p.E45K|FOLR1_uc001osd.1_Missense_Mutation_p.E45K	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	45					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						GCACCACAAGGAAAAGCCAGG	0.577													15	52					0	0	1	0	0
CAPN5	726	broad.mit.edu	37	11	76831883	76831883	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:76831883C>T	uc001oxx.2	+	10	1600	c.1415C>T	c.(1414-1416)CCC>CTC	p.P472L	CAPN5_uc009yup.2_Missense_Mutation_p.P512L|CAPN5_uc009yuq.2_Missense_Mutation_p.P508L|CAPN5_uc001oxy.2_Missense_Mutation_p.P512L|CAPN5_uc001oya.2_Missense_Mutation_p.P34L	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	472	Domain III.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						GTCATCATCCCCACAACCTTC	0.622													34	127					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76853860	76853860	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:76853860G>A	uc001oyb.2	+	3	396	c.124G>A	c.(124-126)GAA>AAA	p.E42K	MYO7A_uc010rsl.1_Missense_Mutation_p.E42K|MYO7A_uc010rsm.1_Missense_Mutation_p.E31K|MYO7A_uc001oyc.2_Missense_Mutation_p.E42K	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	42	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GGTGGATGATGAAGACAATGT	0.597													5	7					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77409626	77409626	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:77409626G>A	uc001oyn.2	-	7	2741	c.2621C>T	c.(2620-2622)TCA>TTA	p.S874L	RSF1_uc001oym.2_Missense_Mutation_p.S622L	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	874					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CTCCTCTTCTGAAGCTGCAGA	0.453													42	60					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78437165	78437165	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:78437165C>T	uc001ozl.3	-	23	3972	c.3509G>A	c.(3508-3510)GGA>GAA	p.G1170E		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1170	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TAGGCTCCATCCTCCAAGCTT	0.458													74	185					0	0	1	0	0
NAALAD2	10003	broad.mit.edu	37	11	89911178	89911178	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:89911178C>T	uc001pdf.3	+	16	1860	c.1751C>T	c.(1750-1752)CCT>CTT	p.P584L	NAALAD2_uc009yvx.2_Missense_Mutation_p.P551L|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	584	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AAAATCATTCCTTTTAATATT	0.338													20	46					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92085682	92085682	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:92085682G>A	uc001pdj.3	+	1	421	c.404G>A	c.(403-405)GGA>GAA	p.G135E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	135	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTGTCAGAGGAGAGGATTTG	0.353										TCGA Ovarian(4;0.039)			143	338					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92624224	92624224	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:92624224G>A	uc001pdj.3	+	25	13636	c.13619G>A	c.(13618-13620)AGC>AAC	p.S4540N	FAT3_uc001pdi.3_Missense_Mutation_p.S1012N	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4572	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGAGAGCTCAGCCTCGCCAGC	0.517										TCGA Ovarian(4;0.039)			110	340					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93104339	93104339	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:93104339G>A	uc001pdq.2	+	7	782	c.682G>A	c.(682-684)GAA>AAA	p.E228K	CCDC67_uc001pdo.1_Missense_Mutation_p.E228K|CCDC67_uc001pdp.2_Missense_Mutation_p.E228K	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	228	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				GTTCATTATTGAAAAACTGAA	0.348													4	16					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94341757	94341757	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:94341757C>T	uc001pfa.2	+	15	2059	c.1848C>T	c.(1846-1848)TCC>TCT	p.S616S	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	616	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AGTTAAAGTCCCTGATGGTGG	0.403													29	65					0	0	1	0	0
MMP27	64066	broad.mit.edu	37	11	102573848	102573848	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:102573848T>A	uc001phd.1	-	3	366	c.343A>T	c.(343-345)ATA>TTA	p.I115L		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	115					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TAGTTTATTATTCTTAAAAAT	0.343													9	21					0	0	1	0	0
MMP3	4314	broad.mit.edu	37	11	102710968	102710968	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:102710968G>A	uc001phj.1	-	6	871	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	269					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	GGTCTCAGGGGAGTCAGGGGG	0.517													20	59					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103908310	103908310	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:103908310C>T	uc001phr.2	+	1	1003	c.760C>T	c.(760-762)CCT>TCT	p.P254S	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	254					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GAATGGGCATCCTTTGAAGGC	0.498													41	42					0	0	1	0	0
CASP1	834	broad.mit.edu	37	11	104902005	104902005	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:104902005G>A	uc010rve.1	-	4	357	c.340C>T	c.(340-342)CCT>TCT	p.P114S	CASP1_uc001pig.2_Missense_Mutation_p.P21S|CASP1_uc001pik.2_Missense_Mutation_p.P77S|CASP1_uc010rvf.1_Missense_Mutation_p.P21S|CASP1_uc010rvg.1_Missense_Mutation_p.P93S|CASP1_uc010rvh.1_Missense_Mutation_p.P21S|CASP1_uc010rvi.1_Intron|CASP1_uc001pim.3_Missense_Mutation_p.P114S|CASP1_uc009yxi.2_Missense_Mutation_p.P93S|CASP1_uc010rvj.1_Missense_Mutation_p.P114S|CASP1_uc009yxj.2_Intron|CASP1_uc010rvk.1_Missense_Mutation_p.P75S|CASP1_uc010rvl.1_Missense_Mutation_p.P114S	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	114					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	ACTGCCTGAGGAGCTGCAAGA	0.483													9	15					0	0	1	0	0
LAYN	143903	broad.mit.edu	37	11	111426001	111426001	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:111426001T>A	uc001plr.1	+	6	1004	c.668T>A	c.(667-669)TTT>TAT	p.F223Y	LAYN_uc001plp.1_Missense_Mutation_p.F215Y|LAYN_uc001plq.1_Missense_Mutation_p.F223Y|LAYN_uc001pls.1_Missense_Mutation_p.F215Y|LAYN_uc010rwg.1_Missense_Mutation_p.F70Y|LAYN_uc010rwh.1_Missense_Mutation_p.F71Y	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	223	Extracellular (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		AAAAAAACATTTAAAGAAAGT	0.403													11	14					0	0	1	0	0
APOA5	116519	broad.mit.edu	37	11	116661246	116661246	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:116661246C>T	uc001ppr.2	-	3	707	c.699G>A	c.(697-699)CGG>CGA	p.R233R	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Silent_p.R233R|APOA5_uc009yzf.2_Silent_p.R233R|APOA5_uc009yzg.2_Silent_p.R259R	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	233					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GCGTGAGCTTCCGGGAGAGCA	0.701													51	54					0	0	1	0	0
APOA4	337	broad.mit.edu	37	11	116691979	116691979	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:116691979C>T	uc001pps.1	-	3	899	c.795G>A	c.(793-795)CAG>CAA	p.Q265Q		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GCGCCAGCCTCTGCCGCAGCT	0.652													120	131					0	0	1	0	0
SIK3	23387	broad.mit.edu	37	11	116719905	116719905	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:116719905G>A	uc001ppy.2	-	21	3468	c.3432C>T	c.(3430-3432)TCC>TCT	p.S1144S	SIK3_uc001ppz.2_Silent_p.S983S|SIK3_uc001pqa.2_Silent_p.S1084S|SIK3_uc001ppw.2_Silent_p.S501S|SIK3_uc001ppx.2_Silent_p.S522S	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	1144						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GCTCATGGACGGAGGGGCGTG	0.597													228	302					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117351222	117351222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:117351222C>T	uc001prh.1	-	14	2903	c.2901G>A	c.(2899-2901)TGG>TGA	p.W967*		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	907	Extracellular (Potential).|Fibronectin type-III 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		ATCGCTGGGTCCAGCGCAGGT	0.632													8	10					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121477932	121477932	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:121477932C>T	uc001pxx.2	+	37	5179	c.5099C>T	c.(5098-5100)TCC>TTC	p.S1700F	SORL1_uc010rzp.1_Missense_Mutation_p.S546F|SORL1_uc010rzq.1_Missense_Mutation_p.S315F	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1700	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATGTGGGCCTCCCAGAGGGCT	0.453													13	20					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413290	124413290	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:124413290C>T	uc010sam.1	-	1	261	c.261G>A	c.(259-261)AGG>AGA	p.R87R		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TGATGTTCTTCCTTGAGACAA	0.433													19	25					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413547	124413547	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:124413547C>T	uc010sam.1	-	1	4	c.4G>A	c.(4-6)GCA>ACA	p.A2T		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TTTTTGGCTGCCATTCTTTTT	0.493													21	28					0	0	1	0	0
NTM	50863	broad.mit.edu	37	11	132081940	132081940	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:132081940C>T	uc001qgp.2	+	3	1089	c.425C>T	c.(424-426)TCT>TTT	p.S142F	NTM_uc001qgm.2_Missense_Mutation_p.S142F|NTM_uc010sch.1_Missense_Mutation_p.S133F|NTM_uc010sci.1_Missense_Mutation_p.S142F|NTM_uc010scj.1_Missense_Mutation_p.S101F|NTM_uc001qgo.2_Missense_Mutation_p.S142F|NTM_uc001qgq.2_Missense_Mutation_p.S142F|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	142	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GTAGAGATTTCTTCAGATATC	0.393													10	42					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133789663	133789663	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:133789663G>A	uc001qgx.3	-	18	4188	c.3957C>T	c.(3955-3957)ACC>ACT	p.T1319T		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1319	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TGGGTGGTGGGGTCTCCGGTC	0.692													3	9					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134076535	134076535	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:134076535G>A	uc001qhd.1	-	8	1581	c.975C>T	c.(973-975)TCC>TCT	p.S325S	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	325					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TGATGACTTGGGAGGTAACAG	0.463													30	66					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134079302	134079302	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:134079302G>A	uc001qhd.1	-	5	1243	c.637C>T	c.(637-639)CGA>TGA	p.R213*	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	213					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		ATGGCATTTCGAATTTGAGAA	0.343													10	34					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	670564	670564	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:670564C>T	uc001qii.1	+	20	2944	c.2944C>T	c.(2944-2946)CAT>TAT	p.H982Y	B4GALNT3_uc001qik.1_Missense_Mutation_p.H531Y	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	982	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			TTTCTTCCATCATTTCCATTC	0.597													13	25					0	0	1	0	0
TSPAN9	10867	broad.mit.edu	37	12	3387672	3387672	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:3387672C>T	uc001qlp.2	+	4	296	c.149C>T	c.(148-150)TCG>TTG	p.S50L		NM_006675	NP_006666	O75954	TSN9_HUMAN	tetraspanin 9	50	Extracellular (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00153)|COAD - Colon adenocarcinoma(12;0.0831)			AGCTTCCCTTCGTTGTCTGCA	0.592													27	82					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919946	4919946	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:4919946G>A	uc001qng.2	+	1	1605	c.739G>A	c.(739-741)GGC>AGC	p.G247S		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	247						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GGGGACCGGGGGCTCCTCCTC	0.547										HNSCC(72;0.22)			30	96					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5685080	5685080	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:5685080G>A	uc001qnm.2	-	24	2613	c.2541C>T	c.(2539-2541)CTC>CTT	p.L847L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	852	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TGAAAAAGGAGAGGGTGTGGT	0.512													7	22					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5860075	5860075	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:5860075G>A	uc001qnm.2	-	11	1177	c.1105C>T	c.(1105-1107)CTC>TTC	p.L369F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	374	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GATGGGATGAGGAATGATGTA	0.333													9	14					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6128127	6128127	+	Missense_Mutation	SNP	G	A	A	rs149424724	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:6128127G>A	uc001qnn.1	-	28	4707	c.4457C>T	c.(4456-4458)TCG>TTG	p.S1486L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1486					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCCCAGGGTCGAAACCCCCAA	0.592													5	27					0	0	1	0	0
SCNN1A	6337	broad.mit.edu	37	12	6463994	6463994	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:6463994C>T	uc001qnx.2	-	7	1453	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G	SCNN1A_uc001qnv.2_Silent_p.G88G|SCNN1A_uc001qnw.2_Silent_p.G447G|SCNN1A_uc010sfb.1_Silent_p.G411G	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	388	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	CATAATCGCCCCCAAGTCTGT	0.522													29	85					0	0	1	0	0
GAPDH	2597	broad.mit.edu	37	12	6645673	6645674	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:6645673_6645674GG>AA	uc001qop.1	+	3	145_146	c.43_44GG>AA	c.(43-45)GGG>AAG	p.G15K	GAPDH_uc009zep.1_5'UTR|GAPDH_uc001qoq.1_5'UTR|GAPDH_uc001qor.1_5'UTR|GAPDH_uc001qos.1_Missense_Mutation_p.G15K|GAPDH_uc001qot.1_Missense_Mutation_p.G15K|GAPDH_uc001qou.1_5'UTR|GAPDH_uc001qov.1_5'UTR|GAPDH_uc001qow.1_5'Flank|GAPDH_uc001qox.1_5'Flank	NM_002046	NP_002037	P04406	G3P_HUMAN	glyceraldehyde-3-phosphate dehydrogenase	15	Interaction with WARS.				gluconeogenesis|glycolysis|neuron apoptosis|peptidyl-cysteine S-trans-nitrosylation|protein stabilization	cytosol|membrane|nucleus|perinuclear region of cytoplasm	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|peptidyl-cysteine S-nitrosylase activity|protein binding				0					NADH(DB00157)	TGGTCGTATTGGGCGCCTGGTC	0.515													33	72					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7242309	7242309	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:7242309G>A	uc010sfy.1	-	4	504	c.445C>T	c.(445-447)CGG>TGG	p.R149W	C1R_uc010sfz.1_Missense_Mutation_p.R163W|C1R_uc010sga.1_Missense_Mutation_p.R115W	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	149	EGF-like; calcium-binding (Potential).				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GATTTGCTCCGGGAAGCACAT	0.557													14	23					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7470658	7470658	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:7470658G>A	uc001qsx.1	+	5	801	c.801G>A	c.(799-801)TGG>TGA	p.W267*		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	267					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						ATATCATATGGAATATGTCTG	0.418													22	34					0	0	1	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329946	8329946	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:8329946G>A	uc001qud.1	+	5	742	c.670G>A	c.(670-672)GGA>AGA	p.G224R	FAM66C_uc001que.3_5'Flank|FAM66C_uc001quf.3_5'Flank|FAM66C_uc009zgc.2_5'Flank|FAM66C_uc001qug.3_5'Flank	NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	224					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		AACTCACACGGGAGAGAGACC	0.418													42	55					0	0	1	0	0
TAS2R7	50837	broad.mit.edu	37	12	10954564	10954564	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:10954564G>A	uc001qyv.2	-	1	663	c.606C>T	c.(604-606)TTC>TTT	p.F202F		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	202	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						GGATCAAGAGGAAAAAGGACA	0.502													3	21					0	0	1	0	0
TAS2R8	50836	broad.mit.edu	37	12	10958828	10958828	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:10958828G>A	uc010shh.1	-	1	752	c.752C>T	c.(751-753)TCT>TTT	p.S251F		NM_023918	NP_076407	Q9NYW2	TA2R8_HUMAN	taste receptor, type 2, member 8	251	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			ovary(2)	2						CATCAAAATAGAAGAAATATA	0.373													12	24					0	0	1	0	0
TAS2R9	50835	broad.mit.edu	37	12	10961740	10961740	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:10961740G>A	uc001qyx.2	-	1	1028	c.935C>T	c.(934-936)CCA>CTA	p.P312L	TAS2R8_uc010shh.1_5'Flank	NM_023917	NP_076406	Q9NYW1	TA2R9_HUMAN	taste receptor, type 2, member 9	312	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						GGGTCTCTATGGAACAAAAGG	0.353													14	28					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716301	13716301	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:13716301G>A	uc001rbt.2	-	13	4050	c.3871C>T	c.(3871-3873)CAG>TAG	p.Q1291*		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1291	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCTTCTTCTGGGCCTTGGAA	0.622													33	82					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18534758	18534758	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:18534758G>A	uc001rdt.2	+	13	1932	c.1816G>A	c.(1816-1818)GAA>AAA	p.E606K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E647K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E425K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	606					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GCCTCCCGTAGAAATGATAAC	0.473													37	84					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891646	18891646	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:18891646G>A	uc001rdy.2	+	1	602	c.444G>A	c.(442-444)AAG>AAA	p.K148K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	148					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				TCAAAAGTAAGGAGTACTTGA	0.383													16	40					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20790163	20790163	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:20790163C>T	uc001reh.1	+	9	2153	c.2131C>T	c.(2131-2133)CTT>TTT	p.L711F		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	711					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TGGCCGTATTCTTAGTCAGGT	0.328													11	17					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205109	21205109	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:21205109G>A	uc010sin.1	+	9	1270	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.E471K	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	424						membrane	transporter activity				0						AAGTCAATGGGAACCCGTCTG	0.373													27	50					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21453303	21453303	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:21453303C>T	uc001rer.2	-	7	1140	c.889G>A	c.(889-891)GAA>AAA	p.E297K	SLCO1A2_uc001res.2_Missense_Mutation_p.E297K|SLCO1A2_uc010siq.1_Missense_Mutation_p.E165K|SLCO1A2_uc010sio.1_Missense_Mutation_p.E165K|SLCO1A2_uc010sip.1_Missense_Mutation_p.E165K|SLCO1A2_uc001ret.2_Missense_Mutation_p.E295K|SLCO1A2_uc001reu.2_Missense_Mutation_p.E277K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	297	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CCATATTTTTCCTTCTTGACC	0.294													10	27					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21699320	21699320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:21699320C>T	uc001rfb.2	-	12	1762	c.1507G>A	c.(1507-1509)GGA>AGA	p.G503R		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	503					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GGAAATACTCCAAGATGACAA	0.368													6	29					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32994008	32994008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:32994008C>T	uc001rlj.3	-	7	1757	c.1642G>A	c.(1642-1644)GGT>AGT	p.G548S	PKP2_uc001rlk.3_Missense_Mutation_p.G504S|PKP2_uc010skj.1_Missense_Mutation_p.G504S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	548					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TCGAGCAAACCATTTGCTTTT	0.428													33	112					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40040211	40040211	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:40040211A>C	uc001rmc.2	+	4	450	c.283A>C	c.(283-285)ATG>CTG	p.M95L	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	95										ovary(6)	6						AGAACTTACAATGTCGCCTCA	0.318													34	82					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40692992	40692992	+	Silent	SNP	C	T	T	rs142989436	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:40692992C>T	uc001rmg.3	+	25	3550	c.3429C>T	c.(3427-3429)TCC>TCT	p.S1143S	LRRK2_uc001rmh.1_Silent_p.S765S|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1143	LRR 7.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ACATTTCATCCCTATCAGAGA	0.408													35	135					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629874	47629874	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:47629874C>T	uc001rpn.2	+	4	1759	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	FAM113B_uc001rpq.2_Missense_Mutation_p.S343F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	343	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GCCTGTTTTTCCTCAGACCAT	0.393													48	112					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48919933	48919933	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:48919933C>T	uc010slu.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAGCCAAAATCATTCACCACT	0.507													37	70					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49434949	49434949	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:49434949G>A	uc001rta.3	-	31	6604	c.6604C>T	c.(6604-6606)CCT>TCT	p.P2202S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2202	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GCCCCCGTAGGACTAGGATAG	0.701			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			3	15					0	0	1	0	0
LMBR1L	55716	broad.mit.edu	37	12	49494192	49494192	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:49494192G>A	uc001rth.3	-	15	1561	c.1219C>T	c.(1219-1221)CCT>TCT	p.P407S	LMBR1L_uc001rtg.3_Missense_Mutation_p.P402S|LMBR1L_uc001rti.3_Missense_Mutation_p.P387S	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	407	Helical; (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						GAGAAGACAGGAAGTGCTGAG	0.393													20	87					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51888893	51888893	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:51888893C>T	uc001rys.1	+	21	3112	c.2934C>T	c.(2932-2934)TTC>TTT	p.F978F	SLC4A8_uc001rym.2_Silent_p.F925F|SLC4A8_uc001ryn.2_Silent_p.F925F|SLC4A8_uc001ryo.2_Silent_p.F925F|SLC4A8_uc010snj.1_Silent_p.F1005F|SLC4A8_uc001ryr.2_Silent_p.F978F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	978	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		CCATTGTTTTCCCAATGATGG	0.348													15	31					0	0	1	0	0
KRT83	3889	broad.mit.edu	37	12	52709786	52709786	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:52709786G>A	uc001saf.2	-	7	1216	c.1153C>T	c.(1153-1155)CAA>TAA	p.Q385*		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	385	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCATGTCTTGCTTGGCCTTC	0.647													16	48					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52886893	52886893	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:52886893C>T	uc001sam.2	-	1	289	c.80G>A	c.(79-81)GGG>GAG	p.G27E		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	27	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGCTGACCCCAGGGAGCCT	0.657													20	65					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52941685	52941685	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:52941685G>A	uc001sao.2	-	6	1130	c.1060C>T	c.(1060-1062)CTC>TTC	p.L354F		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	354	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CTCTGGATGAGCCGAGTGAGC	0.562													32	91					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53042002	53042002	+	Silent	SNP	G	A	A	rs138032518	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:53042002G>A	uc001sat.2	-	5	1110	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	359	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TCCTCTGGGCGATCTCCTCAT	0.567													31	101					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53187985	53187985	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:53187985C>T	uc001say.2	-	2	842	c.776G>A	c.(775-777)CGG>CAG	p.R259Q		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	259	Rod.|Coil 1B.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CAGGTAGCTCCGCAGGTAGTT	0.532													37	125					0	0	1	0	0
SP7	121340	broad.mit.edu	37	12	53722606	53722606	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:53722606G>T	uc001sct.2	-	2	727	c.620C>A	c.(619-621)CCA>CAA	p.P207Q	SP7_uc001scu.2_Missense_Mutation_p.P189Q|SP7_uc001scv.2_Missense_Mutation_p.P207Q	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	207					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTAGGGGGCTGGATTAAGGGG	0.597													20	44					1.50039e-11	1.52142e-11	1	1	0
AMHR2	269	broad.mit.edu	37	12	53823959	53823959	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:53823959T>C	uc001scx.1	+	10	1396	c.1318T>C	c.(1318-1320)TAT>CAT	p.Y440H	AMHR2_uc009zmy.1_Silent_p.P438P	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	440	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CCAACTGGCCTATGAGGCAGA	0.577									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				66	163					0	0	1	0	0
GPR84	53831	broad.mit.edu	37	12	54757240	54757240	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:54757240G>A	uc001sfu.2	-	2	486	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	132	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						CCTTGGCACTGAAAACTTGGG	0.547													8	29					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54799122	54799122	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:54799122C>T	uc001sga.2	-	12	1121	c.1053G>A	c.(1051-1053)ATG>ATA	p.M351I	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	351	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						GGGTCCGATCCATGAGCAGGG	0.647													13	15					0	0	1	0	0
MUCL1	118430	broad.mit.edu	37	12	55248921	55248921	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:55248921C>T	uc001sgk.2	+	2	148	c.80C>T	c.(79-81)CCA>CTA	p.P27L		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	27	Thr-rich.					extracellular region|membrane					0						ACAGCTGCTCCAGCTGACACG	0.428													4	16					0	0	1	0	0
OR6C70	390327	broad.mit.edu	37	12	55863112	55863112	+	Missense_Mutation	SNP	C	T	T	rs111636907	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:55863112C>T	uc010spn.1	-	1	811	c.811G>A	c.(811-813)GGA>AGA	p.G271R		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGTTACTCCTTTGCTTAAA	0.383													18	53					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56030784	56030784	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:56030784G>A	uc010spq.1	+	1	109	c.109G>A	c.(109-111)GTC>ATC	p.V37I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GGTCTACCTGGTCACCTTGCT	0.572													32	70					0	0	1	0	0
ERBB3	2065	broad.mit.edu	37	12	56487660	56487661	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:56487660_56487661CC>TT	uc001sjh.2	+	13	1786_1787	c.1593_1594CC>TT	c.(1591-1596)ACCCAC>ACTTAC	p.H532Y	ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Missense_Mutation_p.H473Y|ERBB3_uc009zok.2_5'UTR|ERBB3_uc001sjk.2_5'Flank|ERBB3_uc001sjj.1_Missense_Mutation_p.H100Y	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	532	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			TCTGTGTGACCCACTGCAACTT	0.559													37	74					0	0	1	0	0
SMARCC2	6601	broad.mit.edu	37	12	56559230	56559231	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:56559230_56559231GG>AA	uc001skb.2	-	26	3116_3117	c.3010_3011CC>TT	c.(3010-3012)CCA>TTA	p.P1004L	SMARCC2_uc001skd.2_Missense_Mutation_p.P1035L|SMARCC2_uc001ska.2_Missense_Mutation_p.P1035L|SMARCC2_uc001skc.2_Missense_Mutation_p.P1034L|SMARCC2_uc010sqf.1_Missense_Mutation_p.P924L	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1004	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CAAACTTCCTGGAGGGGCCCCA	0.668													14	32					0	0	1	0	0
USP15	9958	broad.mit.edu	37	12	62749225	62749225	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:62749225G>A	uc001src.1	+	8	893	c.884G>A	c.(883-885)GGA>GAA	p.G295E	USP15_uc001srb.1_Missense_Mutation_p.G266E	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	295					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		AGTAACTTGGGAAATACGTGT	0.373													10	26					0	0	1	0	0
TMEM5	10329	broad.mit.edu	37	12	64202503	64202503	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:64202503C>T	uc001srq.1	+	6	1067	c.963C>T	c.(961-963)GCC>GCT	p.A321A	TMEM5_uc001srr.1_Silent_p.A218A|TMEM5_uc001srs.1_Silent_p.A61A	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	321	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		ACCAAGATGCCTTGCTTCAGA	0.413													22	49					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75441953	75441953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:75441953G>A	uc001sxg.1	-	4	2304	c.1760C>T	c.(1759-1761)TCT>TTT	p.S587F	KCNC2_uc009zry.2_Missense_Mutation_p.S587F|KCNC2_uc001sxe.2_Missense_Mutation_p.S587F|KCNC2_uc001sxf.2_Intron|KCNC2_uc010stw.1_Intron	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	587	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CCCTCCATCAGAAGCACACGT	0.443													28	85					0	0	1	0	0
CAPS2	84698	broad.mit.edu	37	12	75687068	75687068	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:75687068C>T	uc001sxk.3	-	13	1378	c.1181G>A	c.(1180-1182)CGA>CAA	p.R394Q	CAPS2_uc001sxm.3_Missense_Mutation_p.R162Q|CAPS2_uc009zsa.2_5'UTR|CAPS2_uc001sxi.3_Missense_Mutation_p.R130Q|CAPS2_uc001sxj.3_Missense_Mutation_p.R305Q|CAPS2_uc001sxl.3_Missense_Mutation_p.R375Q	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	394							calcium ion binding			ovary(2)	2						ATTTGTGATTCGGAGTTTAAG	0.318													6	37					0	0	1	0	0
ZDHHC17	23390	broad.mit.edu	37	12	77191256	77191256	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:77191256C>T	uc001syk.1	+	2	299	c.136C>T	c.(136-138)CCT>TCT	p.P46S	ZDHHC17_uc001syi.1_RNA|ZDHHC17_uc001syj.2_Intron	NM_015336	NP_056151	Q8IUH5	ZDH17_HUMAN	huntingtin interacting protein 14	46	Cytoplasmic (Potential).				lipoprotein transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|protein binding|protein-cysteine S-palmitoleyltransferase activity|signal transducer activity|zinc ion binding				0						ATATGGTGAACCTCTTGGACG	0.363													13	23					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81627142	81627142	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:81627142C>T	uc001szl.1	+	13	1702	c.1611C>T	c.(1609-1611)ACC>ACT	p.T537T	ACSS3_uc001szm.1_Silent_p.T536T|ACSS3_uc001szn.1_Silent_p.T219T	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	537						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ATTATGATACCATGGATGCTG	0.338													29	84					0	0	1	0	0
TMTC2	160335	broad.mit.edu	37	12	83251006	83251006	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:83251006C>T	uc001szt.2	+	2	733	c.301C>T	c.(301-303)CTC>TTC	p.L101F	TMTC2_uc001szr.1_Missense_Mutation_p.L101F|TMTC2_uc001szs.1_Missense_Mutation_p.L101F|TMTC2_uc010suk.1_Intron	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	101	Helical; (Potential).					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						AGTCACTGGTCTCTTCACAAG	0.507													36	74					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85434361	85434361	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:85434361G>A	uc001tac.2	+	3	337	c.226G>A	c.(226-228)GAA>AAA	p.E76K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E76K|LRRIQ1_uc001taa.1_Missense_Mutation_p.E76K|LRRIQ1_uc001tad.2_5'UTR	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	76										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TCAGGACCTGGAAGATACTGA	0.313													18	73					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	90020308	90020308	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:90020308T>G	uc001tbh.2	-	7	1233	c.1052A>C	c.(1051-1053)AAA>ACA	p.K351T	ATP2B1_uc001tbg.2_Missense_Mutation_p.K351T|ATP2B1_uc001tbf.2_Missense_Mutation_p.K21T	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	351	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CAAATTTGCTTTCTTTTTATC	0.373													12	30					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100478272	100478272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:100478272G>A	uc001tgq.2	-	10	1499	c.1270C>T	c.(1270-1272)CCC>TCC	p.P424S	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.P424S|UHRF1BP1L_uc001tgp.2_Missense_Mutation_p.P74S	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	424										ovary(2)	2						GTGTGCTGGGGAGAGGCATGT	0.338													22	63					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	103984745	103984745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:103984745G>A	uc001tjw.2	+	2	338	c.152G>A	c.(151-153)GGA>GAA	p.G51E		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	51	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CTCAACCTTGGAGTCAAGTGC	0.423													22	58					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112672959	112672959	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:112672959G>A	uc009zwc.2	-	30	4589	c.4571C>T	c.(4570-4572)GCT>GTT	p.A1524V		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GCCATCCACAGCCTCACTCTC	0.453													8	21					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532887	113532887	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:113532887G>A	uc001tuk.1	+	7	1763	c.1427G>A	c.(1426-1428)GGG>GAG	p.G476E		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	476					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						GCCATCTACGGGGAGAAGACG	0.647													15	25					0	0	1	0	0
DDX54	79039	broad.mit.edu	37	12	113616795	113616795	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:113616795G>A	uc001tup.2	-	5	629	c.601C>T	c.(601-603)CTG>TTG	p.L201L	DDX54_uc001tuq.3_Silent_p.L201L	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	201	Helicase ATP-binding.				estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						TCTCCACCCAGGATCAGGGCA	0.547													6	14					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116534506	116534506	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:116534506G>A	uc001tvw.2	-	4	502	c.447C>T	c.(445-447)CCC>CCT	p.P149P		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	149					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent			p.P149S(1)		skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CCTTTTCGTAGGGTCGGACAA	0.378													10	42					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117718564	117718564	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:117718564G>A	uc001twm.1	-	8	2176	c.1490C>T	c.(1489-1491)ACC>ATC	p.T497I		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	497					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GTCCCCCAGGGTGGAGCCGTC	0.602													17	44					0	0	1	0	0
TAOK3	51347	broad.mit.edu	37	12	118639110	118639110	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:118639110C>T	uc001twx.2	-	12	1273	c.978G>A	c.(976-978)GAG>GAA	p.E326E	TAOK3_uc001tww.2_Silent_p.E156E|TAOK3_uc001twy.3_Silent_p.E326E	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	326					MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTTCCTCATCCTCCTGTGACT	0.244													19	36					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119909868	119909868	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:119909868A>T	uc001txe.2	+	3	705	c.240A>T	c.(238-240)AAA>AAT	p.K80N	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	80	Potential.									ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CTGCAAAGAAAAAGAAGCAAC	0.433													37	82					0	0	1	0	0
ORAI1	84876	broad.mit.edu	37	12	122079521	122079522	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:122079521_122079522CC>TT	uc010szz.1	+	3	1071_1072	c.878_879CC>TT	c.(877-879)CCC>CTT	p.P293L		NM_032790	NP_116179	Q96D31	CRCM1_HUMAN	calcium release-activated calcium channel	293	Cytoplasmic (Potential).				platelet activation|positive regulation of calcium ion transport	integral to plasma membrane	protein binding|store-operated calcium channel activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000415)|Epithelial(86;0.00148)		GGGGACCACCCCCTGACGCCCG	0.624													17	46					0	0	1	0	0
GPR109A	338442	broad.mit.edu	37	12	123187247	123187247	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:123187247A>G	uc001ucx.1	-	1	658	c.584T>C	c.(583-585)CTG>CCG	p.L195P	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	195	Helical; Name=5; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GAAGAACTCCAGGAGGAACAT	0.537													26	62					0	0	1	0	0
CCDC62	84660	broad.mit.edu	37	12	123282718	123282718	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:123282718G>A	uc001udc.2	+	8	1093	c.948G>A	c.(946-948)AAG>AAA	p.K316K	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Silent_p.K316K|CCDC62_uc001ude.2_Silent_p.K77K	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	316	Potential.					cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		ATGACTCAAAGATGGAGGAAT	0.274													10	18					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184401	130184401	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:130184401G>A	uc009zyl.1	-	2	1250	c.922C>T	c.(922-924)CCT>TCT	p.P308S		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	308	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATGGAAACAGGAAAAGTCAGC	0.507													13	43					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921619	130921619	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:130921619G>A	uc001uil.2	-	10	1987	c.1823C>T	c.(1822-1824)CCC>CTC	p.P608L	RIMBP2_uc001uim.2_Missense_Mutation_p.P516L|RIMBP2_uc001uin.1_Missense_Mutation_p.P267L	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	608	Pro-rich.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTTGGTTTCGGGGACTCCAGA	0.642													7	19					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132396488	132396488	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:132396488C>T	uc001uje.2	+	13	1218	c.950C>T	c.(949-951)TCC>TTC	p.S317F		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	317	Interaction with GABARAP and GABARAPL2.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GACTCTCAGTCCCTGGGCGAG	0.637													6	32					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133218876	133218876	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr12:133218876G>A	uc001uks.1	-	38	5104	c.5060C>T	c.(5059-5061)TCC>TTC	p.S1687F	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Missense_Mutation_p.S491F|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1687					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGCTGTAGGGGACAGCCAGAG	0.572								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					19	40					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412905	19412905	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:19412905C>T	uc010tcj.1	-	1		c.33205G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CAATTTTCATCCATCAGATCT	0.279													16	77					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20048162	20048162	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:20048162A>G	uc001umd.2	-	7	495	c.284T>C	c.(283-285)CTA>CCA	p.L95P	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Missense_Mutation_p.L58P|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	95						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AGTGAAAATTAGGTCGGCAAG	0.289													3	76					0	0	1	0	0
XPO4	64328	broad.mit.edu	37	13	21442841	21442841	+	Splice_Site	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:21442841C>A	uc001unq.3	-	2	106	c.70_splice	c.e2-1	p.A24_splice	XPO4_uc010tcr.1_Intron	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4						protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AAGGTGGTGCCTTGAGAGTTA	0.353													18	37					7.41877e-09	7.50253e-09	1	1	0
SACS	26278	broad.mit.edu	37	13	23928945	23928945	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:23928945G>A	uc001uon.2	-	8	2395	c.1806C>T	c.(1804-1806)GCC>GCT	p.A602A	SACS_uc001uoo.2_Silent_p.A455A|SACS_uc001uop.1_Silent_p.A389A|SACS_uc001uoq.1_Silent_p.A455A	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	602					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CTGGTACCTTGGCAATCTGCT	0.537													23	46					0	0	1	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24465787	24465787	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:24465787G>A	uc010tcw.1	-	3	643	c.643C>T	c.(643-645)CCT>TCT	p.P215S	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_Missense_Mutation_p.G14E|PCOTH_uc009zzx.2_Missense_Mutation_p.G23E|C1QTNF9B_uc010tcv.1_Intron|C1QTNF9B_uc001uoz.1_Intron|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.P215S	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	215	C1q.					collagen					0						TCTGAAGAAGGAAACTTGCTC	0.453													24	116					0	0	1	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895547	24895547	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:24895547C>T	uc001upj.2	+	4	704	c.643C>T	c.(643-645)CCT>TCT	p.P215S	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	215	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GAGCAAGTTTCCTTCTTCAGA	0.458													4	29					0	0	1	0	0
LOC374491	374491	broad.mit.edu	37	13	25144839	25144839	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:25144839G>A	uc001upm.2	+	4		c.380G>A								Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						GCAAATATGGGAACTCCAATG	0.438													10	22					0	0	1	0	0
SHISA2	387914	broad.mit.edu	37	13	26621093	26621093	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:26621093G>A	uc001uqm.1	-	2	531	c.446C>T	c.(445-447)CCC>CTC	p.P149L		NM_001007538	NP_001007539	Q6UWI4	SHSA2_HUMAN	shisa homolog 2 precursor	149	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2						GCTCTGCTGGGGATCCTGCTT	0.627													9	41					0	0	1	0	0
GPR12	2835	broad.mit.edu	37	13	27333417	27333417	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:27333417C>T	uc010aal.2	-	2	770	c.548G>A	c.(547-549)CGA>CAA	p.R183Q	GPR12_uc010tdl.1_Missense_Mutation_p.R24Q	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	183	Extracellular (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GGACTCGTCTCGGAGGCAGTT	0.602													16	34					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600974	29600974	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:29600974G>A	uc001usl.3	+	1	2227	c.2169G>A	c.(2167-2169)TTG>TTA	p.L723L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	713	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GTTCCGGATTGATGGTGTCTG	0.468													17	36					0	0	1	0	0
C13orf26	122046	broad.mit.edu	37	13	31548997	31548997	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:31548997G>A	uc001uti.2	+	7	842	c.823G>A	c.(823-825)GAT>AAT	p.D275N		NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	275										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		ACAAATTATTGATCGCTTTAT	0.294													3	8					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32811678	32811678	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:32811678C>T	uc001utx.2	+	44	6469	c.5973C>T	c.(5971-5973)ATC>ATT	p.I1991I	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1991					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TTGGTGTCATCGACCGATCCT	0.542													10	20					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32954009	32954009	+	Nonsense_Mutation	SNP	C	T	T	rs80359159		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:32954009C>T	uc001uub.1	+	23	9303	c.9076C>T	c.(9076-9078)CAG>TAG	p.Q3026*		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3026					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AGCTAACATACAGTTAGCAGC	0.308			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			8	30					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635004	33635004	+	Silent	SNP	C	T	T	rs141133607		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:33635004C>T	uc001uus.2	+	4	1796	c.1788C>T	c.(1786-1788)TCC>TCT	p.S596S	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	596	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TTCGCTTCTCCCTGGACTGGG	0.532													20	68					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35517115	35517115	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:35517115C>T	uc001uvb.2	+	2	364	c.158C>T	c.(157-159)TCG>TTG	p.S53L		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	53						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGCTCCGGCTCGGTGATGCTC	0.478													6	39					0	0	1	0	0
CCNA1	8900	broad.mit.edu	37	13	37011773	37011773	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:37011773C>G	uc001uvr.3	+	3	655	c.305C>G	c.(304-306)ACA>AGA	p.T102R	CCNA1_uc010teo.1_Missense_Mutation_p.T58R|CCNA1_uc010abq.2_Missense_Mutation_p.T58R|CCNA1_uc010abp.2_Missense_Mutation_p.T58R|CCNA1_uc001uvs.3_Missense_Mutation_p.T101R|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	102					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TAGGGGATCACAAGAATCAGG	0.483													27	93					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39358893	39358893	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:39358893C>T	uc001uwv.2	+	6	6276	c.5967C>T	c.(5965-5967)ATC>ATT	p.I1989I	FREM2_uc001uww.2_Silent_p.I75I	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1989	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGGGAAGAATCGGATCAGAGT	0.448													12	25					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39438411	39438412	+	Splice_Site	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:39438411_39438412GG>AA	uc001uwv.2	+	16	7961	c.7652_splice	c.e16-1	p.G2551_splice	FREM2_uc001uww.2_Splice_Site_p.G637_splice	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2						cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATTTATCATAGGCATGCTCCCC	0.406													6	34					0	0	1	0	0
FNDC3A	22862	broad.mit.edu	37	13	49741385	49741385	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:49741385A>C	uc001vcm.2	+	9	1288	c.983A>C	c.(982-984)GAA>GCA	p.E328A	FNDC3A_uc001vcn.2_Missense_Mutation_p.E328A|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.E272A|FNDC3A_uc001vcq.2_Missense_Mutation_p.E272A	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	328	Fibronectin type-III 1.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		CCCAGAGGAGAAGAAACAAAT	0.328													6	24					0	0	1	0	0
FNDC3A	22862	broad.mit.edu	37	13	49749598	49749598	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:49749598C>T	uc001vcm.2	+	13	1756	c.1451C>T	c.(1450-1452)TCC>TTC	p.S484F	FNDC3A_uc001vcn.2_Missense_Mutation_p.S484F|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.S410F|FNDC3A_uc001vcq.2_Missense_Mutation_p.S428F	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	484	Fibronectin type-III 3.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		ACTTGGTTATCCTTACAATGG	0.393													8	28					0	0	1	0	0
CCDC70	83446	broad.mit.edu	37	13	52440151	52440151	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:52440151G>A	uc001vfu.3	+	2	933	c.637G>A	c.(637-639)GAA>AAA	p.E213K	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	213						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		GCAGATGCTCGAAGATGGGCC	0.607													17	43					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76423412	76423412	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:76423412C>T	uc001vjv.2	+	24	4409	c.3649C>T	c.(3649-3651)CCT>TCT	p.P1217S	LMO7_uc010thv.1_Missense_Mutation_p.P1168S|LMO7_uc010thw.1_Missense_Mutation_p.P1094S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1502						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TGTTAGTCTTCCTGGGATCAT	0.453													12	35					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77844167	77844167	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:77844167C>T	uc001vkf.2	-	8	1197	c.1106G>A	c.(1105-1107)AGA>AAA	p.R369K	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	369					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTTTCTGTTTCTAATACGGGA	0.284													37	71					0	0	1	0	0
SLAIN1	122060	broad.mit.edu	37	13	78335034	78335034	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:78335034C>T	uc010thy.1	+	6	1037	c.994C>T	c.(994-996)CTT>TTT	p.L332F	SLAIN1_uc001vkk.1_Missense_Mutation_p.L255F|SLAIN1_uc001vkl.1_Missense_Mutation_p.L211F|SLAIN1_uc010thz.1_Missense_Mutation_p.L210F|SLAIN1_uc010aex.1_Missense_Mutation_p.L97F|SLAIN1_uc010aey.1_Missense_Mutation_p.L97F|SLAIN1_uc001vkm.2_Missense_Mutation_p.L211F	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	474										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		CCGACAGCCTCTTAAAGCCAC	0.498													31	53					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453842	84453842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:84453842C>T	uc001vlk.2	-	1	2687	c.1801G>A	c.(1801-1803)GAG>AAG	p.E601K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	601	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTCCCGGTCTCCGCCAACCCA	0.572													6	12					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92345629	92345629	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:92345629C>T	uc010tif.1	+	3	880	c.514C>T	c.(514-516)CCT>TCT	p.P172S		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	172						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CAGTCTTTTTCCTCTGGTCTA	0.458													33	71					0	0	1	0	0
ABCC4	10257	broad.mit.edu	37	13	95673862	95673862	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:95673862G>A	uc001vmd.3	-	31	4064	c.3945C>T	c.(3943-3945)CCC>CCT	p.P1315P	ABCC4_uc010afj.2_Silent_p.P106P|ABCC4_uc010afk.2_Silent_p.P1268P	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1315					platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTAAGGTCGAGGGCTGTCCAT	0.383													13	39					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96239835	96239835	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:96239835C>T	uc001vmk.2	-	20	3028	c.2176G>A	c.(2176-2178)GGA>AGA	p.G726R	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Missense_Mutation_p.G202R|DZIP1_uc001vml.2_Missense_Mutation_p.G707R	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	726					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			ATTTCGCTTCCCTCGGTCCCG	0.557													35	52					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485030	97485030	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:97485030G>A	uc001vmw.2	+	2	1018	c.994G>A	c.(994-996)GAA>AAA	p.E332K		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	332	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GAACGAGAGTGAAAGAAACAC	0.488													23	44					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110825108	110825108	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:110825108C>T	uc001vqw.3	-	41	3637	c.3515G>A	c.(3514-3516)GGA>GAA	p.G1172E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1172	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GAATCCTCTTCCTGGTAGACC	0.443													21	66					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110857848	110857848	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:110857848C>T	uc001vqw.3	-	16	1018	c.896G>A	c.(895-897)GGG>GAG	p.G299E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	299	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TACGGGACTCCCTTTTTCCCC	0.398													32	100					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111080842	111080842	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:111080842G>A	uc001vqx.2	+	7	678	c.389G>A	c.(388-390)GGA>GAA	p.G130E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	130					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGGCCCAGGGGAAGGCCGGGC	0.622													24	58					0	0	1	0	0
F7	2155	broad.mit.edu	37	13	113773127	113773127	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr13:113773127G>A	uc001vsv.2	+	9	1257	c.1206G>A	c.(1204-1206)GGG>GGA	p.G402G	F7_uc001vsw.2_Silent_p.G380G|F7_uc010tjt.1_Silent_p.G333G	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	402	Peptidase S1.		G -> E (in FA7D).|G -> R (in FA7D).		anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CCTGCAAGGGGGACAGTGGAG	0.637													10	18					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20248751	20248751	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20248751G>A	uc010tku.1	+	1	270	c.270G>A	c.(268-270)AAG>AAA	p.K90K		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGAGAGGAAGATAATTTCCT	0.448													62	484					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20249241	20249241	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20249241G>A	uc010tku.1	+	1	760	c.760G>A	c.(760-762)GGG>AGG	p.G254R		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTAATGTTTGGGCCATCCAT	0.438													28	253					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20296110	20296110	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20296110T>A	uc010tkv.1	+	1	503	c.503T>A	c.(502-504)TTT>TAT	p.F168Y		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CGCTTGCCTTTTTGTGGCCCA	0.522													33	270					0	0	1	0	0
OR11H6	122748	broad.mit.edu	37	14	20692623	20692623	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20692623G>A	uc010tlc.1	+	1	755	c.755G>A	c.(754-756)CGA>CAA	p.R252Q		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	252	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		GGTGCTGGTCGAACTAAAGCT	0.483													7	25					0	0	1	0	0
PARP2	10038	broad.mit.edu	37	14	20813132	20813132	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20813132C>T	uc001vxc.2	+	2	116	c.88C>T	c.(88-90)CCA>TCA	p.P30S	RPPH1_uc001vxa.1_5'Flank|PARP2_uc001vxd.2_Missense_Mutation_p.P30S|PARP2_uc001vxb.1_Missense_Mutation_p.P30S	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	30	Potential.				protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		CAACACGGCTCCAGAAGACTC	0.418								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					14	56					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20841288	20841288	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:20841288C>T	uc001vxe.2	-	48	6873	c.6833G>A	c.(6832-6834)AGG>AAG	p.R2278K	TEP1_uc010ahj.1_RNA|TEP1_uc010ahk.2_Missense_Mutation_p.R1621K|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.R2170K|TEP1_uc010tlh.1_Missense_Mutation_p.R616K	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2278	WD 16.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TGCAGAACTCCTTGGTATACA	0.493													26	59					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21796666	21796666	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:21796666G>A	uc001wag.2	+	18	2979	c.2979G>A	c.(2977-2979)AAG>AAA	p.K993K	RPGRIP1_uc001wah.2_Silent_p.K635K|RPGRIP1_uc001wai.2_Silent_p.K319K|RPGRIP1_uc001wak.2_Silent_p.K468K|RPGRIP1_uc010aim.2_Silent_p.K376K|RPGRIP1_uc001wal.2_Silent_p.K352K|RPGRIP1_uc001wam.2_Silent_p.K310K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	993	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GAGAAAGAAAGGAGAAGGAGC	0.433													11	44					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21991828	21991828	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:21991828G>A	uc001wbe.2	-	2	2316	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	SALL2_uc010tly.1_Silent_p.F676F|SALL2_uc010tlz.1_Silent_p.F541F|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Silent_p.F543F|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	678	C2H2-type 4.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TGTGGCCCACGAAATGTGCAC	0.567													21	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22090699	22090699	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:22090699C>T	uc001wbi.2	+	2	351	c.338C>T	c.(337-339)TCT>TTT	p.S113F						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		GACTCTGCCTCTTACTTCTGC	0.463													5	25					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133627	22133627	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:22133627G>A	uc010tmd.1	+	1	331	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TGCCTGTGCCGAGATCTTTCT	0.453													55	134					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235902	23235902	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:23235902C>T	uc001wgn.2	+	1	172	c.172C>T	c.(172-174)CCG>TCG	p.P58S	OXA1L_uc010tnc.1_Missense_Mutation_p.P58S|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.P58S|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AAGTCCTCTTCCGGGCAAAAT	0.607													32	98					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23902316	23902316	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:23902316G>A	uc001wjx.2	-	4	428	c.322C>T	c.(322-324)CGC>TGC	p.R108C		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	108	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GAGCCGTAGCGATCCTTGAGG	0.572													21	32					0	0	1	0	0
REC8	9985	broad.mit.edu	37	14	24647306	24647306	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:24647306C>T	uc001wmr.2	+	14	1301	c.874C>T	c.(874-876)CCA>TCA	p.P292S	REC8_uc001wms.2_Missense_Mutation_p.P292S	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	292	Pro-rich.|Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		GAGGAGGCCCCCAGTCCCCCC	0.612													14	43					0	0	1	0	0
HEATR5A	25938	broad.mit.edu	37	14	31776024	31776024	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:31776024G>A	uc001wrf.3	-	25	4078	c.4001C>T	c.(4000-4002)TCC>TTC	p.S1334F	HEATR5A_uc010ami.2_Missense_Mutation_p.S1232F	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1621							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CAACTGAATGGAAGGTGATTC	0.383													7	24					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724228	38724228	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:38724228G>A	uc001wum.1	-	1	1347	c.1000C>T	c.(1000-1002)CCT>TCT	p.P334S		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	334	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		TCTTGTTCAGGGACAAGTGGT	0.562													19	72					0	0	1	0	0
SEC23A	10484	broad.mit.edu	37	14	39514386	39514386	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:39514386G>A	uc001wup.1	-	16	2103	c.1880C>T	c.(1879-1881)TCT>TTT	p.S627F	SEC23A_uc010tqa.1_Missense_Mutation_p.S513F|SEC23A_uc010tqb.1_Missense_Mutation_p.S598F	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	627					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		TCCACTAAAAGAATACGCATA	0.358													16	25					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174573	63174573	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:63174573G>A	uc001xfx.2	-	11	2671	c.2620C>T	c.(2620-2622)CGT>TGT	p.R874C	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	874	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTATCCAAACGAAGGTCACTT	0.507													20	74					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63246607	63246607	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:63246607C>T	uc001xfx.2	-	10	1909	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	KCNH5_uc001xfy.2_Intron|KCNH5_uc001xfz.1_Missense_Mutation_p.E562K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	620	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AGGGTGGTTTCCTTCCAGAAG	0.433													7	36					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63453901	63453901	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:63453901C>T	uc001xfx.2	-	5	489	c.438G>A	c.(436-438)TGG>TGA	p.W146*	KCNH5_uc001xfy.2_Nonsense_Mutation_p.W146*|KCNH5_uc001xfz.1_Nonsense_Mutation_p.W88*|KCNH5_uc001xga.2_Nonsense_Mutation_p.W88*	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	146	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CAAATTTCGTCCAACCTTAAA	0.378													20	37					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64691225	64691225	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:64691225A>G	uc001xgm.2	+	113	20590	c.20360A>G	c.(20359-20361)GAC>GGC	p.D6787G	SYNE2_uc001xgl.2_Missense_Mutation_p.D6810G|SYNE2_uc010apy.2_Missense_Mutation_p.D3172G|SYNE2_uc001xgn.2_Missense_Mutation_p.D1749G|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.D757G|SYNE2_uc001xgq.2_Missense_Mutation_p.D1166G|SYNE2_uc001xgr.2_Missense_Mutation_p.D570G|SYNE2_uc010tsi.1_Missense_Mutation_p.D444G|SYNE2_uc001xgs.2_Missense_Mutation_p.D458G|SYNE2_uc001xgt.2_Missense_Mutation_p.D332G	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6787	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GACTCGGGGGACCAGCCTCCT	0.507													27	62					0	0	1	0	0
RAB15	376267	broad.mit.edu	37	14	65417755	65417755	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:65417755C>T	uc001xhz.2	-	4	442	c.361G>A	c.(361-363)GGT>AGT	p.G121S	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_RNA	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family	Error:Variant_position_missing_in_P59190_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		GGTGAGGCACCCTCTCCACAC	0.582													15	30					0	0	1	0	0
C14orf181	400223	broad.mit.edu	37	14	69262882	69262882	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:69262882C>T	uc001xkj.1	-	1	309	c.130G>A	c.(130-132)GAC>AAC	p.D44N		NM_207442	NP_997325			hypothetical protein LOC400223												0				all cancers(60;0.002)|BRCA - Breast invasive adenocarcinoma(234;0.00204)|OV - Ovarian serous cystadenocarcinoma(108;0.0399)		TGGAGCGCGTCCCTTCGTGGG	0.667													14	36					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712557	70712557	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:70712557C>T	uc010ttg.1	-	1	1962	c.1311G>A	c.(1309-1311)GTG>GTA	p.V437V		NR_003951				SubName: Full=ADAM21-like protein;												0						TACCATCTTTCACTGCACCAA	0.448													13	29					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712649	70712649	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:70712649G>A	uc010ttg.1	-	1	1870	c.1219C>T	c.(1219-1221)CAT>TAT	p.H407Y		NR_003951				SubName: Full=ADAM21-like protein;												0						AAAGTAAAATGATCTTGGAGA	0.398													15	40					0	0	1	0	0
ADAM20	8748	broad.mit.edu	37	14	70990578	70990578	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:70990578G>A	uc001xme.2	-	2	1292	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	299	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		TGTCTTTTATGAAAAGATGTG	0.353													16	43					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209278	71209278	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:71209278G>A	uc001xmm.2	-	6	1357	c.1357C>T	c.(1357-1359)CGG>TGG	p.R453W	MAP3K9_uc010ttk.1_Missense_Mutation_p.R190W|MAP3K9_uc001xmk.2_Missense_Mutation_p.R147W|MAP3K9_uc001xml.2_Missense_Mutation_p.R453W	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	453					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		AGTGCAGCCCGCGTCAGCTCC	0.627													12	25					0	0	1	0	0
ACOT1	641371	broad.mit.edu	37	14	74004392	74004392	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:74004392C>T	uc001xol.1	+	1	465	c.267C>T	c.(265-267)CCC>CCT	p.P89P	HEATR4_uc010tua.1_Intron|ACOT1_uc010tuc.1_Silent_p.P89P	NM_001037161	NP_001032238	Q86TX2	ACOT1_HUMAN	acyl-CoA thioesterase 1	89					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	cytosol	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(108;1.37e-45)|BRCA - Breast invasive adenocarcinoma(234;0.0033)		CCGAGAAACCCTTGGTGCGGC	0.736													3	20					0	0	1	0	0
VSX2	338917	broad.mit.edu	37	14	74706502	74706502	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:74706502G>A	uc001xpq.2	+	1	328	c.238G>A	c.(238-240)GGG>AGG	p.G80R		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	80	Pro-rich.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		GGGGCTTCTGGGGCCCGGGGG	0.736													5	9					0	0	1	0	0
TMED8	283578	broad.mit.edu	37	14	77812744	77812744	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:77812744G>A	uc001xto.1	-	3	275	c.275C>T	c.(274-276)GCC>GTC	p.A92V	TMED8_uc010ast.1_RNA|TMED8_uc001xtn.1_5'Flank	NM_213601	NP_998766	Q6PL24	TMED8_HUMAN	transmembrane emp24 protein transport domain	92					transport	integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		TTTCACCAAGGCCTGAGCCTC	0.532													20	53					0	0	1	0	0
C14orf148	122945	broad.mit.edu	37	14	77880383	77880383	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:77880383G>A	uc001xtr.2	-	2	390	c.243C>T	c.(241-243)ATC>ATT	p.I81I	C14orf148_uc010tvi.1_Silent_p.I81I	NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	81					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		CACCTCCAATGATGCCCACCT	0.522													12	14					0	0	1	0	0
AHSA1	10598	broad.mit.edu	37	14	77931932	77931932	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:77931932C>T	uc001xtw.2	+	6	772	c.612C>T	c.(610-612)ATC>ATT	p.I204I	AHSA1_uc010tvk.1_Silent_p.I204I	NM_012111	NP_036243	O95433	AHSA1_HUMAN	activator of heat shock 90kDa protein ATPase	204					protein folding|response to stress	cytosol|endoplasmic reticulum	ATPase activator activity|chaperone binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		GAGTCAAAATCCCCACTTGTA	0.458													14	41					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79434518	79434518	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:79434518G>A	uc001xun.2	+	11	2343	c.1852G>A	c.(1852-1854)GAT>AAT	p.D618N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.D743N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	991	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTTTCCAGGTGATCTCTATAT	0.448													15	31					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089644	86089644	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:86089644G>A	uc001xvr.2	+	2	2553	c.1786G>A	c.(1786-1788)GAC>AAC	p.D596N	FLRT2_uc010atd.2_Missense_Mutation_p.D596N	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	596	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CACCAAGAAGGACAACTCCAT	0.483													35	107					0	0	1	0	0
C14orf159	80017	broad.mit.edu	37	14	91642297	91642297	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:91642297G>A	uc001xzb.2	+	9	1380	c.612G>A	c.(610-612)GAG>GAA	p.E204E	C14orf159_uc010atv.1_RNA|C14orf159_uc001xyy.2_Silent_p.E209E|C14orf159_uc001xyx.2_Silent_p.E192E|C14orf159_uc001xyw.2_Silent_p.E209E|C14orf159_uc001xzc.2_Silent_p.E204E|C14orf159_uc001xza.2_Silent_p.E209E|C14orf159_uc001xyv.2_Silent_p.E209E|C14orf159_uc001xyz.2_Silent_p.E80E|C14orf159_uc001xze.2_Silent_p.E204E	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	204						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		GAATCAAAGAGCTTTCCAAAC	0.502													15	59					0	0	1	0	0
MOAP1	64112	broad.mit.edu	37	14	93650029	93650029	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:93650029G>A	uc001ybj.2	-	3	929	c.559C>T	c.(559-561)CAT>TAT	p.H187Y	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	187					activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		tgagtagtatgaaacatccag	0													20	43					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909009	94909009	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:94909009G>A	uc001ydd.1	-	5	1263	c.1203C>T	c.(1201-1203)CTC>CTT	p.L401L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	401					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CCTCCCAAAGGAGCAAGAGGA	0.567													6	14					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95081333	95081333	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:95081333G>A	uc001ydp.2	+	2	634	c.555G>A	c.(553-555)AAG>AAA	p.K185K	SERPINA3_uc001ydo.3_Silent_p.K210K|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.K185K|SERPINA3_uc001yds.2_Silent_p.K185K|SERPINA3_uc010avg.2_Silent_p.K185K	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	185					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		ACTACGTGAAGAATGGAACTA	0.493													28	64					0	0	1	0	0
C14orf49	161176	broad.mit.edu	37	14	95903265	95903265	+	Silent	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:95903265C>G	uc001yei.3	-	14	2445	c.2430G>C	c.(2428-2430)CTG>CTC	p.L810L	C14orf49_uc010avi.2_Silent_p.L805L	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	810	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CAAAGTTCCTCAGGAGCTGGG	0.502													20	67					0	0	1	0	0
TCL6	27004	broad.mit.edu	37	14	96136854	96136854	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:96136854C>T	uc001yeq.2	+	6	1803	c.334C>T	c.(334-336)CCT>TCT	p.P112S	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Missense_Mutation_p.P54S|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		CGAGTCACGTCCTTTTTTCCT	0.493			T	TRA@	T-ALL								3	22					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707028	96707028	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:96707028C>T	uc010avm.1	+	3	559	c.363C>T	c.(361-363)TTC>TTT	p.F121F	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.F94F|BDKRB2_uc001yfg.2_Silent_p.F121F	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	121	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		CCAACAACTTCGACTGGCTCT	0.592													50	126					0	0	1	0	0
C14orf68	283600	broad.mit.edu	37	14	100795245	100795245	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:100795245C>T	uc001yhc.2	+	5	583	c.510C>T	c.(508-510)GCC>GCT	p.A170A	C14orf68_uc001yhd.2_Silent_p.A24A	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	170	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				CCACGGTAGCCCGTGAGGAGG	0.687													13	38					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406934	105406934	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:105406934G>A	uc010axc.1	-	7	14974	c.14854C>T	c.(14854-14856)CCC>TCC	p.P4952S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P4852S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4952						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATTTTCAAGGGACTCCCTTTC	0.537													17	25					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106208489	106208489	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:106208489G>A	uc010tyt.1	-	3627		c.58725C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Silent_p.S3S|uc001ysf.2_Silent_p.S3S					Parts of antibodies, mostly variable regions.												0						CAGGGGTCCGGGAGATCATGA	0.592													34	78					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106236264	106236264	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:106236264G>A	uc010tyt.1	-	3616		c.57680C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GAAATCATAAGGGTATCCTTG	0.597													20	53					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106790942	106790942	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:106790942C>T	uc010tyt.1	-	387		c.14676G>A								Parts of antibodies, mostly variable regions.												0						CCGCTGATTTCCCGCCAGCGT	0.587													19	135					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106866677	106866677	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr14:106866677G>A	uc010tyt.1	-	281		c.11554C>T								Parts of antibodies, mostly variable regions.												0						GCCTCCCCCAGACTCCACCAG	0.562													21	74					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20488852	20488852	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:20488852G>A	uc001ytf.1	+	2		c.335G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTTTCTGTTGGGACTGCTGGG	0.448													7	55					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22369155	22369155	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:22369155C>T	uc010tzu.1	+	1	580	c.580C>T	c.(580-582)CCA>TCA	p.P194S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CAACACCTTCCCAGAGGAGTT	0.473													36	174					0	0	1	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23261828	23261828	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:23261828G>A	uc001yvh.1	+	11	1239	c.697G>A	c.(697-699)GAA>AAA	p.E233K	uc001yvl.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						CCTGAGGAAGGAACTAGAGAG	0.577													17	52					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922342	24922342	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:24922342C>T	uc001ywo.2	+	1	1802	c.1328C>T	c.(1327-1329)CCA>CTA	p.P443L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	443	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTATCCCTCCACTTTCCACC	0.527													21	50					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922597	24922597	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:24922597C>T	uc001ywo.2	+	1	2057	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	528	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTCCTCTTTCCTTCCTGACT	0.532													45	123					0	0	1	0	0
SNRPN	6638	broad.mit.edu	37	15	25223559	25223559	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:25223559C>A	uc001ywp.1	+	13	1581	c.691C>A	c.(691-693)CCT>ACT	p.P231T	SNRPN_uc001ywq.1_Missense_Mutation_p.P231T|SNRPN_uc001ywr.1_Missense_Mutation_p.P231T|SNRPN_uc001yws.1_Missense_Mutation_p.P231T|SNRPN_uc001ywt.1_Missense_Mutation_p.P231T|SNRPN_uc001ywv.1_Missense_Mutation_p.P234T|SNRPN_uc001yww.1_Missense_Mutation_p.P231T|SNRPN_uc001ywx.1_Missense_Mutation_p.P231T|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	231	Repeat-rich region.|				RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		TCCAGGTCCACCTCCCCCAGG	0.463									Prader-Willi_syndrome				42	133					1.03325e-14	1.04942e-14	1	1	0
UBE3A	7337	broad.mit.edu	37	15	25601062	25601062	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:25601062G>A	uc001zaq.2	-	7	2110	c.2110C>T	c.(2110-2112)CCA>TCA	p.P704S	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.P681S|UBE3A_uc001zas.2_Missense_Mutation_p.P701S|UBE3A_uc001zat.2_Missense_Mutation_p.P681S	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	704					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		TTTGTAATTGGAATTTTATCA	0.299													21	41					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	26026289	26026289	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:26026289G>A	uc010ayu.2	-	2	637	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	177	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TGTCCGCAGGGAAGATTTCGT	0.527													15	46					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28511016	28511016	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:28511016G>A	uc001zbj.2	-	13	1809	c.1703C>T	c.(1702-1704)GCC>GTC	p.A568V	HERC2_uc001zbl.1_Missense_Mutation_p.A263V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	568	RCC1 1.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTCCCCCTCGGCAGTGATGGC	0.642													13	38					0	0	1	0	0
APBA2	321	broad.mit.edu	37	15	29385344	29385344	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:29385344C>T	uc001zck.2	+	6	1343	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F	APBA2_uc010azj.2_Missense_Mutation_p.S379F|APBA2_uc010uat.1_Missense_Mutation_p.S379F|APBA2_uc001zcl.2_Missense_Mutation_p.S379F|APBA2_uc001zcm.1_Missense_Mutation_p.S83F	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	379	PID.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		TACCTGGGGTCCACCCAGCTG	0.567													25	59					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31355449	31355449	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:31355449G>A	uc001zfm.2	-	7	899	c.771C>T	c.(769-771)GGC>GGT	p.G257G	TRPM1_uc010azy.2_Silent_p.G170G|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	257	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CCACGTTAGGGCCCCCCTCCA	0.612													30	71					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33962623	33962623	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:33962623T>G	uc001zhi.2	+	38	5796	c.5726T>G	c.(5725-5727)GTT>GGT	p.V1909G	RYR3_uc010bar.2_Missense_Mutation_p.V1909G	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1909	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGCTAGGGGTTCCTTTggaa	0.398													7	12					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33962736	33962736	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:33962736G>A	uc001zhi.2	+	38	5909	c.5839G>A	c.(5839-5841)GAG>AAG	p.E1947K	RYR3_uc010bar.2_Missense_Mutation_p.E1947K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1947	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCAGCCGACGGAGGAGGAGGA	0.393													21	58					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38786957	38786957	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:38786957C>T	uc001zke.3	-	16	2063	c.1885G>A	c.(1885-1887)GGA>AGA	p.G629R	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Intron|RASGRP1_uc010bbg.2_Intron|RASGRP1_uc001zkd.3_Missense_Mutation_p.G594R	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	629					cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		GTAAAAGGTCCTTCCTCAGGT	0.463													9	17					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39882213	39882213	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:39882213C>T	uc001zkh.2	+	13	2313	c.2134C>T	c.(2134-2136)CAC>TAC	p.H712Y	THBS1_uc010bbi.2_Missense_Mutation_p.H184Y	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	712	TSP type-3 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TGCGACTTACCACTGCAAAAA	0.512													3	9					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39884805	39884805	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:39884805G>A	uc001zkh.2	+	17	2748	c.2569G>A	c.(2569-2571)GAC>AAC	p.D857N	THBS1_uc010bbi.2_Missense_Mutation_p.D329N	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	857	TSP type-3 6.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AGATACCTGTGACAACAATCA	0.433													6	21					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40661034	40661034	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:40661034C>T	uc001zlk.1	+	8	2810	c.2721C>T	c.(2719-2721)TTC>TTT	p.F907F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	907					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		TCCTACAATTCCAGACCAACT	0.612													7	40					0	0	1	0	0
EXD1	161829	broad.mit.edu	37	15	41483784	41483784	+	Splice_Site	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:41483784C>T	uc001znk.2	-	8	738	c.547_splice	c.e8-1	p.V183_splice	EXD1_uc001znj.2_5'Flank|EXD1_uc010ucv.1_Splice_Site_p.V241_splice	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1						nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CATCTGCTACCTGTGGTATTT	0.378													7	32					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42276146	42276146	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:42276146C>T	uc001zow.1	-	19	2326	c.2326G>A	c.(2326-2328)GAG>AAG	p.E776K	PLA2G4E_uc010udc.1_Missense_Mutation_p.E248K|PLA2G4E_uc001zov.1_Missense_Mutation_p.E429K	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	793	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		TGGCCCTGCTCCAGCTCCTCA	0.517													3	19					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43038231	43038231	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:43038231G>A	uc001zqo.2	-	15	3936	c.3497C>T	c.(3496-3498)TCC>TTC	p.S1166F	TTBK2_uc010bcy.2_Missense_Mutation_p.S1097F|uc001zqn.2_5'Flank	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1166	Ser-rich.				cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AGATGGTGAGGAACTAGACGT	0.582													20	72					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43819858	43819858	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:43819858C>T	uc001zrt.2	+	4	6654	c.6187C>T	c.(6187-6189)CCC>TCC	p.P2063S		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2063						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	ACCTGCAGTTCCCCCCCGTGC	0.617													5	26					0	0	1	0	0
CATSPER2	117155	broad.mit.edu	37	15	43931847	43931847	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:43931847G>A	uc001zsh.2	-	6	926	c.711C>T	c.(709-711)GCC>GCT	p.A237A	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.A237A|CATSPER2_uc001zsj.2_Silent_p.A237A|CATSPER2_uc001zsk.2_3'UTR	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	237	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TCACCTTGAGGGCCCTGACCA	0.408													56	130					0	0	1	0	0
MFAP1	4236	broad.mit.edu	37	15	44109528	44109529	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:44109528_44109529GG>AA	uc001zth.1	-	2	381_382	c.197_198CC>TT	c.(196-198)GCC>GTT	p.A66V		NM_005926	NP_005917	P55081	MFAP1_HUMAN	microfibrillar-associated protein 1	66						microfibril				skin(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.33e-07)		CTTGTTCTTTGGCTTTCTTAAT	0.47													32	83					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45436370	45436370	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:45436370C>T	uc001zus.1	+	18	2419	c.2073C>T	c.(2071-2073)TTC>TTT	p.F691F	DUOX1_uc001zut.1_Silent_p.F691F|DUOX1_uc010bee.1_Silent_p.F71F	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	691	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		AGGTCAACTTCGTCCTGTCCA	0.612													17	40					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52534273	52534273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:52534273C>T	uc010bff.2	-	20	2665	c.2528G>A	c.(2527-2529)GGA>GAA	p.G843E	MYO5C_uc010uga.1_Intron|MYO5C_uc010ugb.1_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	843	IQ 4.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TGCCAGGAATCCTCGGCTGTA	0.547													45	129					0	0	1	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081035	53081035	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:53081035C>T	uc002aci.1	-	1	1175	c.1047G>A	c.(1045-1047)AGG>AGA	p.R349R		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	349	CUT.				endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		ACTTCCACATCCTCCGGAAGG	0.662													11	35					0	0	1	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081560	53081560	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:53081560G>A	uc002aci.1	-	1	650	c.522C>T	c.(520-522)GGC>GGT	p.G174G		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	174					endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		TCTGGCCCATGCCGGCCACGT	0.667													21	77					0	0	1	0	0
NEDD4	4734	broad.mit.edu	37	15	56142799	56142799	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:56142799G>T	uc002adj.2	-	10	2845	c.2545C>A	c.(2545-2547)CGG>AGG	p.R849R	NEDD4_uc002adl.2_Silent_p.R430R|NEDD4_uc002adi.2_Silent_p.R777R|NEDD4_uc010ugj.1_Silent_p.R833R|NEDD4_uc010bfm.2_Silent_p.R832R|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	849	Mediates interaction with TNIK (By similarity).|WW 3.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		GGTGCATGCCGGACTTCCCAG	0.458													64	136					7.73544e-29	7.88638e-29	1	1	0
ZNF280D	54816	broad.mit.edu	37	15	56996359	56996359	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:56996359G>A	uc002adu.2	-	4	352	c.135C>T	c.(133-135)ATC>ATT	p.I45I	ZNF280D_uc002adv.2_Silent_p.I32I|ZNF280D_uc010bfq.2_Silent_p.I45I|ZNF280D_uc002adw.1_Silent_p.I73I|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc002ady.2_Silent_p.I45I|ZNF280D_uc002adx.2_Silent_p.I45I	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	45					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		CGCCAACAAAGATTGGCTCAT	0.358													9	12					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63937858	63937858	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:63937858C>T	uc002amp.2	-	56	11050	c.10902G>A	c.(10900-10902)TGG>TGA	p.W3634*		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3634	WD 8.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CTGTAGGGTCCCACTTCATGC	0.383													3	6					0	0	1	0	0
PPIB	5479	broad.mit.edu	37	15	64448234	64448234	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:64448234G>A	uc002and.2	-	5	808	c.639C>T	c.(637-639)ATC>ATT	p.I213I	SNX22_uc002anc.1_3'UTR	NM_000942	NP_000933	P23284	PPIB_HUMAN	peptidylprolyl isomerase B precursor	213	Prevents secretion from ER.				protein folding	endoplasmic reticulum lumen|melanosome	peptide binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding				0					L-Proline(DB00172)	ACTCCTTGGCGATGGCAAAGG	0.597													25	22					0	0	1	0	0
PARP16	54956	broad.mit.edu	37	15	65558956	65558956	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:65558956G>A	uc002aoo.2	-	3	717	c.463C>T	c.(463-465)CGC>TGC	p.R155C	PARP16_uc002aop.2_Intron|PARP16_uc002aoq.2_Missense_Mutation_p.R155C	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	155	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						TTTTCTAGGCGGCTACCATGA	0.488													19	50					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65676369	65676369	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:65676369G>A	uc002aou.1	-	20	3941	c.3731C>T	c.(3730-3732)TCC>TTC	p.S1244F	IGDCC4_uc002aot.1_Missense_Mutation_p.S832F	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1244	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGAGACCGGGGATCTGGGCAG	0.622													13	29					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68620560	68620560	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:68620560C>T	uc002ari.2	-	16	2029	c.1942G>A	c.(1942-1944)GAG>AAG	p.E648K	ITGA11_uc010bib.2_Missense_Mutation_p.E648K	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	648	FG-GAP 7.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TTGGATGGCTCAAAGTGGAGG	0.627													33	67					0	0	1	0	0
KIF23	9493	broad.mit.edu	37	15	69732812	69732812	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:69732812C>T	uc002asb.2	+	17	2170	c.2053C>T	c.(2053-2055)CCA>TCA	p.P685S	KIF23_uc002asc.2_Missense_Mutation_p.P685S|KIF23_uc010bii.2_Missense_Mutation_p.P575S|KIF23_uc010ukc.1_Missense_Mutation_p.P502S	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	685					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						ATCTGTTTCTCCATCACCTGT	0.373													8	22					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72040924	72040924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:72040924G>A	uc002atb.1	+	13	2485	c.2406G>A	c.(2404-2406)TGG>TGA	p.W802*	THSD4_uc002ate.2_Nonsense_Mutation_p.W442*	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	802	TSP type-1 4.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TCACCGAGTGGAGCGAAAGGG	0.567													4	15					0	0	1	0	0
HEXA	3073	broad.mit.edu	37	15	72643491	72643491	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:72643491G>A	uc002aun.3	-	6	862	c.655C>T	c.(655-657)CCA>TCA	p.P219S	uc002aug.2_RNA|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Missense_Mutation_p.P230S|HEXA_uc002auo.3_Missense_Mutation_p.P82S|HEXA_uc010bix.2_Missense_Mutation_p.P219S|HEXA_uc010biy.2_Missense_Mutation_p.P82S|HEXA_uc010uko.1_Missense_Mutation_p.P45S|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	219					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						ATGAGCTCTGGAAAAGTGAAG	0.468													21	40					0	0	1	0	0
BBS4	585	broad.mit.edu	37	15	73007710	73007710	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:73007710G>A	uc002avb.2	+	5	342	c.299G>A	c.(298-300)AGT>AAT	p.S100N	BBS4_uc010ukv.1_Missense_Mutation_p.S88N|BBS4_uc002avc.2_Translation_Start_Site|BBS4_uc002avd.2_Missense_Mutation_p.S108N	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	100	TPR 1.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						AGTCCTCAGAGTGCTGATAAC	0.453									Bardet-Biedl_syndrome				24	60					0	0	1	0	0
EDC3	80153	broad.mit.edu	37	15	74963841	74963841	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:74963841C>T	uc002ayn.2	-	6	927	c.439G>A	c.(439-441)GAA>AAA	p.E147K	EDC3_uc002ayo.2_Missense_Mutation_p.E147K|EDC3_uc002aym.2_Missense_Mutation_p.E147K	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	147					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						CTCAAGGATTCCATGTGCCTG	0.488													32	72					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042806	75042806	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:75042806C>T	uc002ayr.1	+	2	791	c.727C>T	c.(727-729)CGC>TGC	p.R243C		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	243					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CCCCATCCTTCGCTACCTGCC	0.557													38	86					0	0	1	0	0
SIN3A	25942	broad.mit.edu	37	15	75673967	75673967	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:75673967G>A	uc002bai.2	-	18	3534	c.3275C>T	c.(3274-3276)CCT>CTT	p.P1092L	SIN3A_uc002baj.2_Missense_Mutation_p.P1092L|SIN3A_uc010uml.1_Missense_Mutation_p.P1092L	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	1092					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TGCTTCCACAGGGTCATCCGA	0.512													54	112					0	0	1	0	0
PSTPIP1	9051	broad.mit.edu	37	15	77322884	77322884	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:77322884C>T	uc002bcf.2	+	9	1054	c.604C>T	c.(604-606)CGG>TGG	p.R202W	PSTPIP1_uc010bkt.1_RNA|PSTPIP1_uc010umo.1_Missense_Mutation_p.R80W|PSTPIP1_uc010bku.1_Missense_Mutation_p.R193W|PSTPIP1_uc002bcg.2_Missense_Mutation_p.R202W|PSTPIP1_uc010bkw.1_Missense_Mutation_p.R202W|PSTPIP1_uc002bch.1_5'UTR|PSTPIP1_uc002bci.1_5'Flank	NM_003978	NP_003969	O43586	PPIP1_HUMAN	proline-serine-threonine phosphatase interacting	202	Potential.				cell adhesion|signal transduction	cleavage furrow|lamellipodium|perinuclear region of cytoplasm	catalytic activity			ovary(1)	1						GGAGAAGGTCCGGGCTGAGTG	0.642													11	28					0	0	1	0	0
PSTPIP1	9051	broad.mit.edu	37	15	77328215	77328215	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:77328215T>G	uc002bcf.2	+	14	1508	c.1058T>G	c.(1057-1059)ATA>AGA	p.I353R	PSTPIP1_uc010bkt.1_RNA|PSTPIP1_uc010bku.1_Missense_Mutation_p.I344R|PSTPIP1_uc002bcg.2_Missense_Mutation_p.I350R|PSTPIP1_uc010bkw.1_Missense_Mutation_p.I334R|PSTPIP1_uc002bch.1_Missense_Mutation_p.I114R|PSTPIP1_uc002bci.1_RNA	NM_003978	NP_003969	O43586	PPIP1_HUMAN	proline-serine-threonine phosphatase interacting	353					cell adhesion|signal transduction	cleavage furrow|lamellipodium|perinuclear region of cytoplasm	catalytic activity			ovary(1)	1						GTGCAGGAGATACAGGGAAAC	0.612													3	20					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81199005	81199005	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:81199005G>A	uc002bfw.1	+	12	1673	c.1413G>A	c.(1411-1413)GGG>GGA	p.G471G	KIAA1199_uc010unn.1_Silent_p.G471G	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	471										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CTGCCCTAGGGAAACCAATGT	0.587													22	63					0	0	1	0	0
MRPL46	26589	broad.mit.edu	37	15	89008048	89008048	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:89008048G>A	uc002bmj.2	-	3	500	c.475C>T	c.(475-477)CTG>TTG	p.L159L	MRPL46_uc002bmi.1_Silent_p.L37L|MRPL46_uc002bmk.2_Silent_p.L158L|MRPS11_uc002bmm.2_5'Flank|MRPS11_uc002bml.2_5'Flank|MRPS11_uc002bmn.2_5'Flank|MRPS11_uc010bnj.2_5'Flank	NM_022163	NP_071446	Q9H2W6	RM46_HUMAN	mitochondrial ribosomal protein L46 precursor	159						mitochondrion|ribosome	hydrolase activity			central_nervous_system(1)	1	Lung NSC(78;0.203)		BRCA - Breast invasive adenocarcinoma(143;0.188)			CTGACTAACAGGACAAGGTTC	0.517													40	67					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89386648	89386648	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:89386648C>T	uc010upo.1	+	6	1194	c.820C>T	c.(820-822)CGG>TGG	p.R274W	ACAN_uc002bmx.2_Missense_Mutation_p.R274W|ACAN_uc010upp.1_Missense_Mutation_p.R274W|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	274					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CAATGAGTGCCGGCGGCTGGG	0.637													10	13					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90246318	90246318	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:90246318C>T	uc002boj.2	+	3	542	c.441C>T	c.(439-441)TCC>TCT	p.S147S	WDR93_uc002bok.3_Silent_p.S147S|WDR93_uc010bnr.2_Silent_p.S147S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	147					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			ATGTCACTTCCATCTGGGCCA	0.393													37	85					0	0	1	0	0
ZNF774	342132	broad.mit.edu	37	15	90903428	90903428	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:90903428G>A	uc002bpk.3	+	4	551	c.365G>A	c.(364-366)GGA>GAA	p.G122E		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GGGCAACATGGAACCCTTCCA	0.473													9	38					0	0	1	0	0
RGMA	56963	broad.mit.edu	37	15	93595421	93595421	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:93595421C>T	uc002bss.1	-	3	719	c.447G>A	c.(445-447)AAG>AAA	p.K149K	RGMA_uc002bsq.1_Silent_p.K133K|RGMA_uc010boi.1_Silent_p.K40K|RGMA_uc002bsr.1_Silent_p.K40K|RGMA_uc010urc.1_Silent_p.K157K	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	149					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			TGTGAAAGCTCTTCTCGTAAT	0.652													16	24					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101586288	101586288	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:101586288C>T	uc002bwr.2	+	21	3385	c.3066C>T	c.(3064-3066)TTC>TTT	p.F1022F	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1022				F->C: No effect on GTP-binding but loss of subsequent stimulation of kinase activity.	small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGATGAGCTTCGTTCCCGTTG	0.542													17	48					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101971544	101971544	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:101971544G>A	uc002bwy.2	-	5	952	c.638C>T	c.(637-639)CCT>CTT	p.P213L	PCSK6_uc010bpd.2_Missense_Mutation_p.P83L|PCSK6_uc010bpe.2_Missense_Mutation_p.P213L|PCSK6_uc002bxa.2_Missense_Mutation_p.P213L|PCSK6_uc002bxb.2_Missense_Mutation_p.P213L|PCSK6_uc002bxc.1_Missense_Mutation_p.P213L|PCSK6_uc002bxd.1_Missense_Mutation_p.P213L|PCSK6_uc002bxe.2_Missense_Mutation_p.P213L|PCSK6_uc002bxg.1_Missense_Mutation_p.P213L	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	213	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGCCAGGTCAGGGTGATTTCT	0.448													7	17					0	0	1	0	0
NPRL3	8131	broad.mit.edu	37	16	160569	160569	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:160569G>A	uc002cfr.2	-	7	682	c.583C>T	c.(583-585)CTG>TTG	p.L195L	NPRL3_uc010uua.1_RNA|NPRL3_uc002cfp.1_RNA|NPRL3_uc002cfq.2_Silent_p.L16L|NPRL3_uc010uub.1_Silent_p.L170L|NPRL3_uc010uuc.1_Silent_p.L117L|NPRL3_uc002cfs.1_Silent_p.L170L	NM_001077350	NP_001070818	Q12980	NPRL3_HUMAN	conserved gene telomeric to alpha globin cluster	195							protein binding			ovary(1)	1						CACTTGGGCAGGATGTGATGG	0.413													7	17					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	348073	348073	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:348073A>C	uc002cgp.1	-	6	1610	c.1433T>G	c.(1432-1434)GTG>GGG	p.V478G	AXIN1_uc002cgq.1_Missense_Mutation_p.V478G	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	478	Interaction with CTNNB1 (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				TGTCCTCAGCACACGCTGTAC	0.692											OREG0003699	type=REGULATORY REGION|Gene=AXIN1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	3	8					0	0	1	0	0
RHOT2	89941	broad.mit.edu	37	16	720985	720985	+	Missense_Mutation	SNP	C	T	T	rs143577577		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:720985C>T	uc002cip.2	+	10	800	c.733C>T	c.(733-735)CGG>TGG	p.R245W	RHOT2_uc002ciq.2_Missense_Mutation_p.R138W|RHOT2_uc010bqy.2_5'UTR	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	245	Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				GCGGGAGGACCGGCTGACCCT	0.697													5	8					0	0	1	0	0
UBE2I	7329	broad.mit.edu	37	16	1370213	1370213	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:1370213C>T	uc002clc.1	+	5	366	c.262C>T	c.(262-264)CCT>TCT	p.P88S	UBE2I_uc002cld.1_Missense_Mutation_p.P88S|UBE2I_uc002clf.1_Missense_Mutation_p.P88S|UBE2I_uc002clg.1_Missense_Mutation_p.P88S|UBE2I_uc002clh.1_Missense_Mutation_p.P88S|UBE2I_uc002cli.1_Missense_Mutation_p.P88S	NM_194261	NP_919237	P63279	UBC9_HUMAN	ubiquitin-conjugating enzyme E2I	88				VYPS -> GVPF (in Ref. 6; AAC50603).	cell division|chromosome segregation|interspecies interaction between organisms|mitosis|negative regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|protein sumoylation	cytoplasm|PML body|synaptonemal complex	ATP binding|enzyme binding|ubiquitin-protein ligase activity			breast(1)|skin(1)	2		Hepatocellular(780;0.00369)				GAATGTGTACCCTTCGGGGAC	0.552													18	35					0	0	1	0	0
C16orf73	254528	broad.mit.edu	37	16	1889285	1889285	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:1889285T>C	uc002cne.2	-	12	1307	c.1189A>G	c.(1189-1191)AGT>GGT	p.S397G	FAHD1_uc002cnd.2_3'UTR|FAHD1_uc010brz.2_Missense_Mutation_p.L220P|C16orf73_uc010uvq.1_Missense_Mutation_p.S397G|C16orf73_uc010uvr.1_Missense_Mutation_p.S190G	NM_152764	NP_689977	Q8N635	CP073_HUMAN	hypothetical protein LOC254528 isoform 2	397					meiosis	cytoplasm					0						TCAGCAACACTTCCTGTGAGA	0.393													13	24					0	0	1	0	0
TRAF7	84231	broad.mit.edu	37	16	2226162	2226162	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:2226162C>T	uc002cow.2	+	19	1958	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	620	WD 6.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TTCAGTGCATCCTACGACCGG	0.682													8	25					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2376264	2376264	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:2376264G>A	uc002cpy.1	-	5	778	c.66C>T	c.(64-66)GTC>GTT	p.V22V	ABCA3_uc010bsk.1_Silent_p.V22V|ABCA3_uc010bsl.1_Silent_p.V22V|ABCA3_uc002cpz.1_Silent_p.V22V	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	22	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CCGTCACCAGGACCTTCCGCT	0.567													21	45					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3298933	3298933	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:3298933C>T	uc002cun.1	-	4	1372	c.1332G>A	c.(1330-1332)GGG>GGA	p.G444G		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	444					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCTTCTCCTCCCCATAGGATC	0.527													35	102					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4828127	4828127	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:4828127C>T	uc002cxq.2	-	9	976	c.835G>A	c.(835-837)GCG>ACG	p.A279T	SEPT12_uc002cxr.2_Missense_Mutation_p.A233T|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	279					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						TCACAGTGCGCCATGTTCTCC	0.582													5	19					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9943739	9943739	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:9943739G>A	uc002czo.3	-	5	1750	c.1202C>T	c.(1201-1203)CCG>CTG	p.P401L	GRIN2A_uc010uym.1_Missense_Mutation_p.P401L|GRIN2A_uc010uyn.1_Missense_Mutation_p.P244L|GRIN2A_uc002czr.3_Missense_Mutation_p.P401L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	401	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTTGTCATCCGGCTCACAGTC	0.587													24	55					0	0	1	0	0
NUBP1	4682	broad.mit.edu	37	16	10851854	10851854	+	Silent	SNP	C	T	T	rs139180704		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:10851854C>T	uc002daa.1	+	7	599	c.576C>T	c.(574-576)ATC>ATT	p.I192I	NUBP1_uc010bum.1_Silent_p.I57I|NUBP1_uc002dab.1_Silent_p.I181I	NM_002484	NP_002475	P53384	NUBP1_HUMAN	nucleotide binding protein 1	192					cell growth|cellular iron ion homeostasis|iron-sulfur cluster assembly	cytosol	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|nucleoside-triphosphatase activity|protein binding			ovary(1)|skin(1)	2						CAGCACACATCGATGGAGCAG	0.587													19	37					0	0	1	0	0
ERCC4	2072	broad.mit.edu	37	16	14041756	14041756	+	Missense_Mutation	SNP	C	T	T	rs12928650		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:14041756C>T	uc002dce.2	+	11	2312	c.2303C>T	c.(2302-2304)TCT>TTT	p.S768F	ERCC4_uc010uyz.1_Missense_Mutation_p.S318F	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	768	Interaction with EME1 and ERCC1.				double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						AAGCCTTTCTCTCTCACTTCC	0.493			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				28	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	15457778	15457778	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:15457778T>C	uc010bvf.1	-	8	791	c.791A>G	c.(790-792)AAG>AGG	p.K264R	uc010uzu.1_Missense_Mutation_p.K264R					RecName: Full=NPIP-like protein 1;																		GGAAGGTGTCTTGAGGCTCAG	0.522													11	99					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	15457780	15457780	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:15457780G>T	uc010bvf.1	-	8	789	c.789C>A	c.(787-789)CTC>CTA	p.L263L	uc010uzu.1_Silent_p.L263L					RecName: Full=NPIP-like protein 1;																		AAGGTGTCTTGAGGCTCAGGG	0.522													11	96					0.0135373	0.0135806	1	1	0
MYH11	4629	broad.mit.edu	37	16	15844178	15844178	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:15844178G>A	uc002ddy.2	-	16	1982	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	MYH11_uc002ddv.2_Silent_p.I632I|MYH11_uc002ddw.2_Silent_p.I625I|MYH11_uc002ddx.2_Silent_p.I632I|MYH11_uc010bvg.2_Silent_p.I457I|MYH11_uc002dea.1_Silent_p.I331I	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	625	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CCAGGCCCACGATGCGGTCCA	0.647			T	CBFB	AML								4	9					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19452036	19452036	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:19452036C>T	uc002dgc.3	+	3	1425	c.676C>T	c.(676-678)CCC>TCC	p.P226S	TMC5_uc010vaq.1_Missense_Mutation_p.P226S|TMC5_uc002dgb.3_Missense_Mutation_p.P226S|TMC5_uc010var.1_Missense_Mutation_p.P226S	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	226	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCAGACTATCCCAGTGCTGA	0.463													26	56					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974815	20974815	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:20974815C>A	uc010vbe.1	-	53	10391	c.10391G>T	c.(10390-10392)TGG>TTG	p.W3464L	DNAH3_uc010vbd.1_Missense_Mutation_p.W899L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3464					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGAGAACTTCCAAGACCCAGG	0.522													13	47					0.000151284	0.000152174	1	1	0
DNAH3	55567	broad.mit.edu	37	16	21049085	21049085	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:21049085G>A	uc010vbe.1	-	34	4948	c.4948C>T	c.(4948-4950)CAG>TAG	p.Q1650*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1650					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTACATACCTGAAACAGAGGG	0.502													8	16					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21063026	21063027	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:21063026_21063027CC>TT	uc010vbe.1	-	29	4202_4203	c.4202_4203GG>AA	c.(4201-4203)CGG>CAA	p.R1401Q		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1401	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGATCACCAGCCGGGGGGAGTT	0.569													23	104					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21213342	21213342	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:21213342G>A	uc002dii.2	-	12	1290	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	ZP2_uc010bwn.1_Silent_p.F469F	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	430	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		TATCATCTTCGAACTTAAATG	0.403													24	47					0	0	1	0	0
NCRNA00169	400508	broad.mit.edu	37	16	21328340	21328340	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:21328340C>T	uc010bwr.1	+	3		c.732C>T				NR_026675				Homo sapiens cDNA FLJ41766 fis, clone IMR322006222.											central_nervous_system(1)	1						ATCACAGCTTCCTTAATTTCT	0.418													38	99					0	0	1	0	0
PLK1	5347	broad.mit.edu	37	16	23701189	23701189	+	Silent	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:23701189C>A	uc002dlz.1	+	10	1670	c.1617C>A	c.(1615-1617)ACC>ACA	p.T539T		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	539	Important for interaction with phosphorylated proteins (By similarity).|POLO box 2.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		AGGATCACACCAAGCTCATCT	0.562													21	38					7.41877e-09	7.50253e-09	1	1	0
GTF3C1	2975	broad.mit.edu	37	16	27480728	27480728	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:27480728G>A	uc002dov.1	-	32	4998	c.4958C>T	c.(4957-4959)TCC>TTC	p.S1653F	GTF3C1_uc002dou.2_Missense_Mutation_p.S1653F	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1653						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GATGCCGGGGGAGTAGTAGCC	0.617													10	23					0	0	1	0	0
APOB48R	55911	broad.mit.edu	37	16	28509498	28509498	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:28509498C>T	uc002dqb.1	+	4	3035	c.3025C>T	c.(3025-3027)CGT>TGT	p.R1009C	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.R547C	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	1009					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCCTCTTTTCGTCGGACTCC	0.682													6	11					0	0	1	0	0
SULT1A2	6799	broad.mit.edu	37	16	28603445	28603445	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:28603445C>T	uc002dqg.1	-	8	1143	c.792G>A	c.(790-792)TGG>TGA	p.W264*	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Nonsense_Mutation_p.W264*	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	264					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						AGGTGGTCTTCCAGTCCCCAG	0.632													10	38					0	0	1	0	0
ZNF768	79724	broad.mit.edu	37	16	30535997	30535997	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:30535997G>A	uc002dyk.3	-	2	1640	c.1464C>T	c.(1462-1464)GCC>GCT	p.A488A	ZNF768_uc010vex.1_Silent_p.A457A|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Silent_p.A457A	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	488	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						TGCCGCACACGGCGCACCTGT	0.657													5	15					0	0	1	0	0
PRR14	78994	broad.mit.edu	37	16	30666100	30666100	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:30666100C>T	uc002dyy.2	+	8	1067	c.809C>T	c.(808-810)ACC>ATC	p.T270I	PRR14_uc002dyz.2_Missense_Mutation_p.T115I|PRR14_uc002dza.2_Missense_Mutation_p.T270I|PRR14_uc002dzb.1_Missense_Mutation_p.T84I	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	proline rich 14	270	Pro-rich.										0			Colorectal(24;0.103)			CCCAACAAAACCCCACAGCCC	0.642													6	16					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30722902	30722902	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:30722902C>T	uc002dze.1	+	11	1714	c.1329C>T	c.(1327-1329)TCC>TCT	p.S443S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.S300S|SRCAP_uc010bzz.1_Silent_p.S13S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	443	Glu-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GTGAGCTTTCCATGGAGGAGC	0.493													23	69					0	0	1	0	0
FUS	2521	broad.mit.edu	37	16	31201606	31201606	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:31201606C>T	uc002ebf.2	+	12	1262	c.1179C>T	c.(1177-1179)GGC>GGT	p.G393G	FUS_uc002ebh.2_Silent_p.G392G|FUS_uc002ebg.2_Silent_p.G188G|FUS_uc002ebi.2_Silent_p.G394G|FUS_uc002ebj.2_Silent_p.G189G|FUS_uc010caj.1_Silent_p.G84G	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	393	Arg/Gly-rich.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		GACCCATGGGCCgtggaggct	0.318			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								21	47					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31422076	31422076	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:31422076C>T	uc002ebv.1	+	12	1282	c.1233C>T	c.(1231-1233)GCC>GCT	p.A411A	ITGAD_uc010cap.1_Silent_p.A411A	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	411	FG-GAP 4.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CCGAGCTAGCCCTGTGGAAGG	0.662													11	51					0	0	1	0	0
ZNF267	10308	broad.mit.edu	37	16	31927110	31927110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:31927110C>T	uc002ecs.3	+	4	1749	c.1540C>T	c.(1540-1542)CAT>TAT	p.H514Y		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	514	C2H2-type 7.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TCGGAAAATTCATACTGGAGA	0.358													10	38					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48221123	48221123	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:48221123G>A	uc002eff.1	-	20	3272	c.2922C>T	c.(2920-2922)TTC>TTT	p.F974F	ABCC11_uc002efg.1_Silent_p.F974F|ABCC11_uc002efh.1_Silent_p.F974F|ABCC11_uc010vgk.1_RNA|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	974	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TATAATAAATGAAGCAAATAA	0.483									Cerumen_Type				21	23					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671862	49671862	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:49671862C>T	uc002efs.2	-	5	1499	c.1201G>A	c.(1201-1203)GGG>AGG	p.G401R	ZNF423_uc010vgn.1_Missense_Mutation_p.G284R	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	401					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CAGCCCTGCCCGTCATCCCGC	0.637													16	22					0	0	1	0	0
NKD1	85407	broad.mit.edu	37	16	50664108	50664108	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:50664108C>T	uc002egg.1	+	7	698	c.474C>T	c.(472-474)AGC>AGT	p.S158S		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	158	EF-hand.|Interaction with DVL1, DVL2 and DVL3 (By similarity).				Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		ACATCACCAGCTTGCTGCACA	0.582													18	30					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173027	51173027	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:51173027G>A	uc010vgs.1	-	2	3137	c.3106C>T	c.(3106-3108)CGT>TGT	p.R1036C	SALL1_uc010vgr.1_Missense_Mutation_p.R939C|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1036	C2H2-type 7.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GAAAAGCCACGATTGCAAACT	0.448													13	15					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56913085	56913085	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:56913085C>T	uc010ccm.2	+	10	1310	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	SLC12A3_uc002ekd.3_Silent_p.F427F|SLC12A3_uc010ccn.2_Silent_p.F426F	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	427					sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GCTGGAACTTCACCGAGTGCA	0.632													8	9					0	0	1	0	0
DPEP3	64180	broad.mit.edu	37	16	68011567	68011567	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:68011567G>A	uc002evc.3	-	6	1091	c.997C>T	c.(997-999)CTG>TTG	p.L333L	DPEP3_uc010cex.2_Silent_p.L333L	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	308					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		AGAAGCTGCAGGATATCATCG	0.512													7	6					0	0	1	0	0
DPEP3	64180	broad.mit.edu	37	16	68011700	68011700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:68011700C>T	uc002evc.3	-	6	958	c.864G>A	c.(862-864)ATG>ATA	p.M288I	DPEP3_uc010cex.2_Missense_Mutation_p.M288I	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	263					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		AATCTATCATCATGCCCAGGC	0.493													10	10					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70884520	70884520	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:70884520C>T	uc002ezr.2	-	74	12607	c.12479G>A	c.(12478-12480)GGA>GAA	p.G4160E	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4161										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTTCACATCTCCTTCCTGCTT	0.408													9	10					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70926328	70926328	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:70926328A>C	uc002ezr.2	-	56	9478	c.9350T>G	c.(9349-9351)GTC>GGC	p.V3117G		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3118										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GAAAACTTGGACATTTGTGGG	0.468													17	90					0	0	1	0	0
AP1G1	164	broad.mit.edu	37	16	71803557	71803557	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:71803557C>T	uc010cgg.2	-	6	925	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	AP1G1_uc002fba.2_Missense_Mutation_p.R204Q|AP1G1_uc002fbb.2_Missense_Mutation_p.R227Q|AP1G1_uc010vmg.1_RNA|AP1G1_uc010vmh.1_Missense_Mutation_p.R286Q	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	204					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				GTCTGGGCTTCGCTCACACAT	0.383													26	34					0	0	1	0	0
GLG1	2734	broad.mit.edu	37	16	74526909	74526909	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:74526909G>A	uc002fcy.3	-	7	1230	c.1180C>T	c.(1180-1182)CGT>TGT	p.R394C	GLG1_uc002fcx.2_Missense_Mutation_p.R394C|GLG1_uc002fcw.3_Missense_Mutation_p.R383C|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	394	Cys-rich GLG1 5.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CTGGCTTCACGCGATCGCGGA	0.408													18	14					0	0	1	0	0
CFDP1	10428	broad.mit.edu	37	16	75446505	75446505	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:75446505C>T	uc002fdy.2	-	3	467	c.330G>A	c.(328-330)GAG>GAA	p.E110E	CFDP1_uc002fdz.2_Silent_p.E24E|CFDP1_uc002fea.1_Silent_p.E110E	NM_006324	NP_006315	Q9UEE9	CFDP1_HUMAN	craniofacial development protein 1	110	Glu-rich.				multicellular organismal development					upper_aerodigestive_tract(1)	1						AGAGTTCGTCCTCCTTCTTTT	0.473													76	70					0	0	1	0	0
TMEM231	79583	broad.mit.edu	37	16	75573925	75573925	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:75573925G>A	uc002fem.2	-	7	981	c.918C>T	c.(916-918)CCC>CCT	p.P306P	CHST5_uc002fej.1_Intron|TMEM231_uc002fek.2_Silent_p.P335P|TMEM231_uc002fel.2_Silent_p.P190P	NM_001077418	NP_001070886	Q9H6L2	TM231_HUMAN	transmembrane protein 231 isoform 2	306						integral to membrane					0						AGTCTCCCCGGGGCGTCACTG	0.488													7	11					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76389314	76389314	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:76389314G>A	uc002feu.1	+	5	681	c.296G>A	c.(295-297)GGA>GAA	p.G99E	CNTNAP4_uc002fev.1_Missense_Mutation_p.G11E|CNTNAP4_uc010chb.1_Missense_Mutation_p.G74E|CNTNAP4_uc002fex.1_Missense_Mutation_p.G102E|CNTNAP4_uc002few.2_Missense_Mutation_p.G74E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	99	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ACTCAAGGGGGATATGGTAGC	0.522													18	25					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83159046	83159046	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:83159046G>A	uc002fgx.2	+	4	543	c.423G>A	c.(421-423)GTG>GTA	p.V141V	CDH13_uc010chh.2_Silent_p.V141V|CDH13_uc010vns.1_Silent_p.V188V|CDH13_uc010vnt.1_5'UTR|CDH13_uc010vnu.1_Intron	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	141	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GGTCCATTGTGGTATCTCCCA	0.358													8	22					0	0	1	0	0
LRRC50	123872	broad.mit.edu	37	16	84203959	84203959	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:84203959G>A	uc002fhl.3	+	8	1706	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K	LRRC50_uc010vnw.1_Missense_Mutation_p.E273K	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	509	Pro-rich.				axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						AGCTGCCAGGGAAGGTAATGT	0.617									Kartagener_syndrome				16	16					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84476138	84476138	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:84476138C>T	uc002fhx.2	+	15	1423	c.1334C>T	c.(1333-1335)GCG>GTG	p.A445V	ATP2C2_uc010chj.2_Missense_Mutation_p.A445V|ATP2C2_uc002fhy.2_Missense_Mutation_p.A462V|ATP2C2_uc002fhz.2_Missense_Mutation_p.A294V	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	445	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GCCAACAATGCGGTCATCAGA	0.552													58	86					0	0	1	0	0
GALNS	2588	broad.mit.edu	37	16	88902153	88902153	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr16:88902153C>T	uc002fly.3	-	7	827	c.738G>A	c.(736-738)TTG>TTA	p.L246L	GALNS_uc010cid.2_Silent_p.L252L|GALNS_uc002flz.3_5'UTR	NM_000512	NP_000503	P34059	GALNS_HUMAN	galactosamine (N-acetyl)-6-sulfate sulfatase	246						lysosome	metal ion binding|N-acetylgalactosamine-4-sulfatase activity|N-acetylgalactosamine-6-sulfatase activity			large_intestine(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0496)	Hyaluronidase(DB00070)	GACTGGTGCCCAAGAAGGGTT	0.607													20	32					0	0	1	0	0
RPH3AL	9501	broad.mit.edu	37	17	177309	177309	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:177309C>T	uc002frd.1	-	1	70	c.26G>A	c.(25-27)GGG>GAG	p.G9E	RPH3AL_uc010vpy.1_Missense_Mutation_p.G9E|RPH3AL_uc002fre.1_Missense_Mutation_p.G9E|RPH3AL_uc002frf.1_Missense_Mutation_p.G9E|RPH3AL_uc010cjl.1_Missense_Mutation_p.G9E	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	9					exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		CTGATCATTCCCGCTGCCGAA	0.617													13	27					0	0	1	0	0
WDR81	124997	broad.mit.edu	37	17	1634460	1634460	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:1634460C>T	uc002fti.2	+	4	645	c.384C>T	c.(382-384)TAC>TAT	p.Y128Y	WDR81_uc002fth.2_Silent_p.Y304Y|WDR81_uc010vqp.1_Silent_p.Y152Y|WDR81_uc002ftj.2_Silent_p.Y1355Y|WDR81_uc010vqq.1_Intron	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	128										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCATCGTGTACCTCTCAGACA	0.647													15	16					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2923856	2923857	+	Missense_Mutation	DNP	GC	CT	CT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:2923856_2923857GC>CT	uc010ckd.2	+	19	1808_1809	c.1718_1719GC>CT	c.(1717-1719)GGC>GCT	p.G573A	RAP1GAP2_uc010cke.2_Missense_Mutation_p.G558A	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	573					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CTGCACACGGGCTCAGAAGGCC	0.634													4	14					0	0	1	0	0
OR1E1	8387	broad.mit.edu	37	17	3301285	3301285	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:3301285G>A	uc002fvj.1	-	1	420	c.420C>T	c.(418-420)CTC>CTT	p.L140L		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGCGAGACAGAGCATGGGGC	0.562											OREG0007321	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=OR1E1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	18	44					0	0	1	0	0
SPATA22	84690	broad.mit.edu	37	17	3343612	3343612	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:3343612C>T	uc002fvm.2	-	9	1158	c.921G>A	c.(919-921)CTG>CTA	p.L307L	SPATA22_uc010vrg.1_Silent_p.L291L|SPATA22_uc010vrf.1_3'UTR|SPATA22_uc002fvn.2_Silent_p.L307L|SPATA22_uc002fvo.2_Silent_p.L307L|SPATA22_uc002fvp.2_Silent_p.L307L|SPATA22_uc010ckf.2_Silent_p.L264L	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	307											0						GGCCTCTAATCAGTCTCGGAA	0.328													12	38					0	0	1	0	0
SPATA22	84690	broad.mit.edu	37	17	3343620	3343620	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:3343620G>A	uc002fvm.2	-	9	1150	c.913C>T	c.(913-915)CCG>TCG	p.P305S	SPATA22_uc010vrg.1_Missense_Mutation_p.P289S|SPATA22_uc010vrf.1_3'UTR|SPATA22_uc002fvn.2_Missense_Mutation_p.P305S|SPATA22_uc002fvo.2_Missense_Mutation_p.P305S|SPATA22_uc002fvp.2_Missense_Mutation_p.P305S|SPATA22_uc010ckf.2_Missense_Mutation_p.P262S	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	305											0						ATCAGTCTCGGAAGTTCACGA	0.333													14	36					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3664359	3664359	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:3664359C>T	uc002fwo.3	-	6	645	c.546G>A	c.(544-546)AAG>AAA	p.K182K		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	182	Glu-rich (acidic).|Extracellular (Potential).|X-domain (extra domain).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		cctcctcctccttctccAGAG	0.403													35	108					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3667190	3667190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:3667190G>A	uc002fwo.3	-	3	319	c.220C>T	c.(220-222)CAG>TAG	p.Q74*		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	74	FG-GAP 1.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ATTTCATCCTGGACAAGGGAA	0.567													14	56					0	0	1	0	0
ENO3	2027	broad.mit.edu	37	17	4856149	4856149	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:4856149C>T	uc002gab.3	+	3	239	c.145C>T	c.(145-147)CTA>TTA	p.L49L	ENO3_uc010vsr.1_5'UTR|ENO3_uc002gac.3_Silent_p.L49L|ENO3_uc010vss.1_Silent_p.L49L|ENO3_uc010vst.1_5'Flank	NM_053013	NP_443739	P13929	ENOB_HUMAN	enolase 3	49					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex	magnesium ion binding|phosphopyruvate hydratase activity			ovary(1)	1						GGCTCTGGAACTAAGAGACGG	0.562													4	17					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5052055	5052055	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:5052055G>A	uc002gau.1	+	30	4866	c.2636G>A	c.(2635-2637)CGA>CAA	p.R879Q	USP6_uc002gav.1_Missense_Mutation_p.R879Q|USP6_uc010ckz.1_Missense_Mutation_p.R562Q	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	879					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						GCAGTCCACCGAAAAATGGTT	0.408			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								10	36					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5433822	5433822	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:5433822G>A	uc002gci.2	-	12	4054	c.3499C>T	c.(3499-3501)CCT>TCT	p.P1167S	NLRP1_uc002gcg.1_Missense_Mutation_p.P1171S|NLRP1_uc002gck.2_Missense_Mutation_p.P1167S|NLRP1_uc002gcj.2_Missense_Mutation_p.P1137S|NLRP1_uc002gcl.2_Missense_Mutation_p.P1137S|NLRP1_uc002gch.3_Missense_Mutation_p.P1167S|NLRP1_uc010clh.2_Missense_Mutation_p.P1167S	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1167					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				ACAAAGTGAGGGAGGTGCACA	0.547													5	36					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6387564	6387564	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:6387564C>T	uc002gdd.3	-	5	474	c.323G>A	c.(322-324)GGA>GAA	p.G108E	PITPNM3_uc010cln.2_Missense_Mutation_p.G72E|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	108					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CTCGATGCTTCCCTGGGCTGG	0.517													36	86					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7193751	7193751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:7193751G>A	uc002gfq.2	-	5	620	c.563C>T	c.(562-564)CCC>CTC	p.P188L		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	188	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						GGCAACTGAGGGAGGCCGGGG	0.652													27	66					0	0	1	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365689	7365689	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:7365689G>A	uc002ghc.3	-	4	2862	c.2612C>T	c.(2611-2613)CCT>CTT	p.P871L	ZBTB4_uc002ghd.3_Missense_Mutation_p.P871L	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	871					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		TTCCTGCACAGGTGGGTATAC	0.632													8	41					0	0	1	0	0
ATP1B2	482	broad.mit.edu	37	17	7558930	7558930	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:7558930G>A	uc002gif.1	+	6	1278	c.695G>A	c.(694-696)GGC>GAC	p.G232D		NM_001678	NP_001669	P14415	AT1B2_HUMAN	Na+/K+ -ATPase beta 2 subunit	232	Extracellular (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|sodium:potassium-exchanging ATPase activity	p.0?(2)|p.?(1)		central_nervous_system(1)|pancreas(1)	2		all_cancers(10;0.000178)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;2.55e-06)|READ - Rectum adenocarcinoma(115;0.168)		CCCTACTATGGCAAAAAGTTC	0.607													13	41					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7669782	7669782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:7669782C>T	uc002giu.1	+	21	3672	c.3658C>T	c.(3658-3660)CTT>TTT	p.L1220F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1220	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTCCAAGGACCTTCAGAACCT	0.572													10	27					0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7804297	7804297	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:7804297C>T	uc002gje.2	+	19	3256	c.3106C>T	c.(3106-3108)CCC>TCC	p.P1036S	CHD3_uc002gjd.2_Missense_Mutation_p.P1095S|CHD3_uc002gjf.2_Missense_Mutation_p.P1036S|CHD3_uc002gjh.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1036					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ATACCTTTTTCCCGTGGCTGC	0.498													17	46					0	0	1	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215590	8215590	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:8215590C>T	uc002glc.2	+	2	354	c.233C>T	c.(232-234)CCC>CTC	p.P78L	ARHGEF15_uc002glb.1_Missense_Mutation_p.P78L|ARHGEF15_uc002gld.2_Missense_Mutation_p.P78L|ARHGEF15_uc010vuw.1_Missense_Mutation_p.P78L	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	78	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CTTTTGCCCCCCTCAGCTTCT	0.622													33	49					0	0	1	0	0
USP43	124739	broad.mit.edu	37	17	9615433	9615433	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:9615433C>T	uc010cod.2	+	14	2319	c.2319C>T	c.(2317-2319)CTC>CTT	p.L773L	USP43_uc002gma.3_Silent_p.L462L|USP43_uc010vva.1_Silent_p.L768L|USP43_uc010coe.2_Silent_p.L570L|USP43_uc002gmc.3_Silent_p.L285L	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	773					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CCAACAGCCTCTGCAATCAGG	0.522													15	24					0	0	1	0	0
USP43	124739	broad.mit.edu	37	17	9632257	9632257	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:9632257C>T	uc010cod.2	+	15	3322	c.3322C>T	c.(3322-3324)CAC>TAC	p.H1108Y	USP43_uc002gma.3_Missense_Mutation_p.H797Y|USP43_uc010vva.1_Missense_Mutation_p.H1103Y|USP43_uc010coe.2_Missense_Mutation_p.H905Y|USP43_uc002gmc.3_Missense_Mutation_p.H620Y	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	1108					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AGTCAAATATCACACTCTTTC	0.507											OREG0024168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	84					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10296288	10296288	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10296288C>T	uc002gmm.2	-	37	5418	c.5323G>A	c.(5323-5325)GAA>AAA	p.E1775K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1775	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GTGTCCTGTTCCTTCTTCAGC	0.512									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				37	103					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10362651	10362651	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10362651C>T	uc002gmn.2	-	15	1615	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	502	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGTACTCTTCCTGCTCCAGC	0.488													23	67					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10399321	10399321	+	Silent	SNP	G	A	A	rs145122906		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10399321G>A	uc002gmo.2	-	35	5209	c.5115C>T	c.(5113-5115)ATC>ATT	p.I1705I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1705	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity	p.I1705I(1)		ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCTGTTCTGCGATTTTCCTGC	0.532													13	35					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404995	10404995	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10404995C>T	uc002gmo.2	-	26	3358	c.3264G>A	c.(3262-3264)GAG>GAA	p.E1088E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1088	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCATTTCAAACTCTTTCCTAT	0.358													10	32					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10412891	10412891	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10412891C>T	uc002gmo.2	-	15	1592	c.1498G>A	c.(1498-1500)GAG>AAG	p.E500K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	500	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCCTGCTCCAGCACGAAC	0.483													34	65					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10435073	10435073	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10435073C>T	uc010coi.2	-	22	2702	c.2574G>A	c.(2572-2574)ATG>ATA	p.M858I	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.M858I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	858	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ATTCTTCCTTCATGGTGGCCA	0.423													16	58					0	0	1	0	0
SCO1	6341	broad.mit.edu	37	17	10600887	10600887	+	Splice_Site	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:10600887C>T	uc002gmr.3	-	1	1	c.-60_splice	c.e1-1		SCO1_uc002gms.3_Splice_Site|C17orf48_uc002gmt.2_5'Flank|C17orf48_uc002gmu.2_5'Flank|C17orf48_uc002gmv.2_5'Flank	NM_004589	NP_004580	O75880	SCO1_HUMAN	cytochrome oxidase deficient homolog 1						cellular copper ion homeostasis|copper ion transport|generation of precursor metabolites and energy|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0						TCCGCTTCCTCCGGAAGTCGG	0.637													3	10					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11556245	11556245	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:11556245G>A	uc002gne.2	+	14	2589	c.2521G>A	c.(2521-2523)GAT>AAT	p.D841N	DNAH9_uc010coo.2_Missense_Mutation_p.D135N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	841	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTCTCTGGATGATCGGCATGA	0.413													15	27					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11608463	11608463	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:11608463G>A	uc002gne.2	+	26	5581	c.5513G>A	c.(5512-5514)GGA>GAA	p.G1838E	DNAH9_uc010coo.2_Missense_Mutation_p.G1132E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1838	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GAGTACCTGGGAAACACACCT	0.527													17	39					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11631201	11631201	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:11631201C>T	uc002gne.2	+	28	5844	c.5776C>T	c.(5776-5778)CGA>TGA	p.R1926*	DNAH9_uc010coo.2_Nonsense_Mutation_p.R1220*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1926	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGAGTTTAATCGAATCTCCGT	0.478													10	27					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12655897	12655897	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:12655897C>T	uc002gnn.2	+	10	1591	c.1292C>T	c.(1291-1293)CCC>CTC	p.P431L	MYOCD_uc002gno.2_Missense_Mutation_p.P431L|MYOCD_uc002gnp.1_Missense_Mutation_p.P335L|MYOCD_uc002gnq.2_Missense_Mutation_p.P150L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	431					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AACACGCTGCCCAATTACCAG	0.577													26	65					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12656526	12656526	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:12656526G>A	uc002gnn.2	+	10	2220	c.1921G>A	c.(1921-1923)GGG>AGG	p.G641R	MYOCD_uc002gno.2_Missense_Mutation_p.G641R|MYOCD_uc002gnp.1_Missense_Mutation_p.G545R|MYOCD_uc002gnq.2_Missense_Mutation_p.G360R	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	641					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TTCACCGCTGGGGGCTGTGAA	0.557													44	100					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	16725556	16725556	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:16725556C>T	uc002gqq.1	-	1		c.338G>A								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		atatcctcctccaaagccact	0.368													9	27					0	0	1	0	0
MPRIP	23164	broad.mit.edu	37	17	17062058	17062058	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:17062058C>T	uc002gqu.1	+	14	1844	c.1788C>T	c.(1786-1788)TTC>TTT	p.F596F	MPRIP_uc002gqv.1_Silent_p.F596F|MPRIP_uc002gqw.1_Silent_p.F351F	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	596	Interaction with RHOA.					cytoplasm|cytoskeleton	actin binding				0						GCAAGCGCTTCGGGATGCTCG	0.711													10	24					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18030465	18030465	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:18030465G>A	uc010vxh.1	+	7	4356	c.4018G>A	c.(4018-4020)GAG>AAG	p.E1340K		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1340	Myosin head-like.|Potential.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCAGAAACGGGAGGTCATGCA	0.577													6	24					0	0	1	0	0
PRPSAP2	5636	broad.mit.edu	37	17	18770639	18770639	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:18770639C>T	uc002gup.1	+	4	375	c.164C>T	c.(163-165)CCT>CTT	p.P55L	PRPSAP2_uc002guo.1_Intron|PRPSAP2_uc010vyi.1_Intron|PRPSAP2_uc010vyj.1_Intron|PRPSAP2_uc010vyk.1_Missense_Mutation_p.P43L	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	55					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						TACCAGGAACCTAACAGAGGT	0.443													18	40					0	0	1	0	0
CCDC144C	348254	broad.mit.edu	37	17	20268552	20268552	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:20268552G>A	uc010cqy.1	+	12		c.2719G>A				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						GGTTGTGAAAGAAAAGAATGA	0.338													7	20					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21730847	21730847	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:21730847G>T	uc002gyy.3	+	2	274	c.149G>T	c.(148-150)CGG>CTG	p.R50L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GGCAAGCAGCGGGAAGATGGC	0.522													3	25					6.4e-05	6.44109e-05	1	1	0
Unknown	0	broad.mit.edu	37	17	21731166	21731166	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:21731166C>T	uc002gyy.3	+	2	593	c.468C>T	c.(466-468)TTC>TTT	p.F156F						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		TGCAGATCTTCGTGAAGACCC	0.537													20	42					0	0	1	0	0
TNFAIP1	7126	broad.mit.edu	37	17	26667480	26667480	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:26667480G>A	uc002hax.1	+	3	370	c.351G>A	c.(349-351)GTG>GTA	p.V117V	TNFAIP1_uc002hay.2_Silent_p.V117V|TNFAIP1_uc010waf.1_Silent_p.V13V	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	117					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		AGGGGCTGGTGAATATGTGCC	0.557													26	25					0	0	1	0	0
TMIGD1	388364	broad.mit.edu	37	17	28652039	28652039	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:28652039C>T	uc002hfa.1	-	4	508	c.435G>A	c.(433-435)GTG>GTA	p.V145V	TMIGD1_uc010csh.1_Silent_p.V145V	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	145	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						GGTTGGCTTTCACATTGCAAA	0.428													31	94					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29552206	29552206	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:29552206C>T	uc002hgg.2	+	17	2272	c.1939C>T	c.(1939-1941)CAT>TAT	p.H647Y	NF1_uc002hgh.2_Missense_Mutation_p.H647Y|NF1_uc010csn.1_Missense_Mutation_p.H507Y|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	647					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GTCCATGGATCATGAAGAATT	0.418			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			32	93					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29556163	29556163	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:29556163C>T	uc002hgg.2	+	21	2863	c.2530C>T	c.(2530-2532)CTT>TTT	p.L844F	NF1_uc002hgh.2_Missense_Mutation_p.L844F|NF1_uc010csn.1_Missense_Mutation_p.L704F|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	844			L -> F (in NF1).|L -> P (in NF1).|L -> R (in NF1; sporadic).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GACTGGCTTCCTTTGTGCCCT	0.517			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			25	13					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29685510	29685510	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:29685510G>A	uc002hgg.2	+	55	8316	c.7983G>A	c.(7981-7983)TTG>TTA	p.L2661L	NF1_uc002hgh.2_Silent_p.L2640L|NF1_uc010cso.2_Silent_p.L849L|NF1_uc010wbt.1_Silent_p.L139L|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2661					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATAATTTGTTGGACTCTAAGA	0.343			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			8	31					0	0	1	0	0
SPACA3	124912	broad.mit.edu	37	17	31322518	31322518	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:31322518G>A	uc002hhs.1	+	2	201	c.126G>A	c.(124-126)CAG>CAA	p.Q42Q	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	42	Cytoplasmic (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			CTCTGAGCCAGAGTGGTGGTG	0.612													43	37					0	0	1	0	0
SYNRG	11276	broad.mit.edu	37	17	35914025	35914025	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:35914025T>C	uc002hoa.2	-	14	1883	c.1800A>G	c.(1798-1800)ATA>ATG	p.I600M	SYNRG_uc010wde.1_Missense_Mutation_p.I522M|SYNRG_uc010wdf.1_Missense_Mutation_p.I522M|SYNRG_uc002hoc.2_Missense_Mutation_p.I521M|SYNRG_uc002hoe.2_Missense_Mutation_p.I522M|SYNRG_uc002hod.2_Missense_Mutation_p.I522M|SYNRG_uc010wdg.1_Missense_Mutation_p.I439M|SYNRG_uc002hob.2_Missense_Mutation_p.I600M|SYNRG_uc002hof.2_Missense_Mutation_p.I312M|SYNRG_uc010cvd.1_Missense_Mutation_p.I400M	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	600	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						GTTTCTGTTGTATAGTTCCTG	0.398													75	50					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36498978	36498978	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:36498978G>A	uc002hpz.2	-	1	716	c.695C>T	c.(694-696)CCT>CTT	p.P232L		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	232	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TTCCAGGAAAGGAGGAGACAG	0.602													26	63					0	0	1	0	0
KRT24	192666	broad.mit.edu	37	17	38855823	38855823	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:38855823C>T	uc002hvd.2	-	6	1291	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	412	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CAGATCTCCTCCTCCAGGGCA	0.527													43	83					0	0	1	0	0
KRT26	353288	broad.mit.edu	37	17	38926062	38926062	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:38926062C>T	uc002hvf.2	-	5	959	c.913G>A	c.(913-915)GAA>AAA	p.E305K		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	305	Rod.|Coil 2.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CGTTTTAATTCGGTCAGCTCA	0.448													34	55					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39116588	39116588	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:39116588G>T	uc002hvo.1	-	6	1198	c.1162C>A	c.(1162-1164)CGG>AGG	p.R388R	KRT39_uc010wfm.1_Silent_p.R121R	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	388	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				CATTCCAGCCGGGACTTGACG	0.478													38	103					9.42957e-07	9.51557e-07	1	1	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334108	39334108	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:39334108G>A	uc002hwd.2	-	1	353	c.309C>T	c.(307-309)CCC>CCT	p.P103P		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	103	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|17.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GGCCACAGCTGGGGCGGCAGC	0.662													30	69					0	0	1	0	0
KRT38	8687	broad.mit.edu	37	17	39594361	39594361	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:39594361C>T	uc002hwq.1	-	6	1648	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	409	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				TCCTCGCTTTCCAGAAGGTTC	0.547													9	25					0	0	1	0	0
ITGA2B	3674	broad.mit.edu	37	17	42461933	42461933	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:42461933C>T	uc002igt.1	-	8	852	c.820G>A	c.(820-822)GAG>AAG	p.E274K		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	274	Potential.|Extracellular (Potential).|FG-GAP 4.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CCGTCGAACTCGCCCACGGCC	0.542													14	47					0	0	1	0	0
HEXIM1	10614	broad.mit.edu	37	17	43226931	43226932	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:43226931_43226932CC>TT	uc002iig.2	+	1	2248_2249	c.374_375CC>TT	c.(373-375)TCC>TTT	p.S125F		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	125					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						TGTCATGACTCCGAGGCCAGTA	0.658											OREG0024474	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	1					0	0	1	0	0
MAPT	4137	broad.mit.edu	37	17	44060965	44060965	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:44060965C>T	uc002ijr.3	+	6	1115	c.795C>T	c.(793-795)ATC>ATT	p.I265I	MAPT_uc010dau.2_Silent_p.I265I|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	265					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				AGGGTGCCATCCCCCTCCCTG	0.677													16	25					0	0	1	0	0
LRRC46	90506	broad.mit.edu	37	17	45914465	45914465	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:45914465G>A	uc002ima.2	+	8	1201	c.945G>A	c.(943-945)ACG>ACA	p.T315T	LRRC46_uc002imb.2_Silent_p.T268T	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	315										ovary(1)	1						CCAAAACTACGGCCAAGAGAA	0.582													20	65					0	0	1	0	0
COPZ2	51226	broad.mit.edu	37	17	46110637	46110637	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:46110637G>A	uc002imy.2	-	8	313	c.300C>T	c.(298-300)ATC>ATT	p.I100I		NM_016429	NP_057513	Q9P299	COPZ2_HUMAN	coatomer protein complex, subunit zeta 2	100					intracellular protein transport|vesicle-mediated transport	cis-Golgi network|COPI vesicle coat					0						TCTTGTAGACGATGGTCATAC	0.517													10	6					0	0	1	0	0
TTLL6	284076	broad.mit.edu	37	17	46847345	46847345	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:46847345C>T	uc010wlo.1	-	15	2190	c.2155G>A	c.(2155-2157)GAC>AAC	p.D719N	TTLL6_uc002iob.2_Missense_Mutation_p.D412N|TTLL6_uc010dbi.2_Intron|TTLL6_uc002ioc.2_Missense_Mutation_p.D472N|TTLL6_uc002iod.2_Intron	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	671						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						ACCACCCTGTCCGTCTCTGGG	0.507													18	69					0	0	1	0	0
NXPH3	11248	broad.mit.edu	37	17	47656161	47656161	+	Silent	SNP	G	A	A	rs36092288		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:47656161G>A	uc002ipa.2	+	2	542	c.258G>A	c.(256-258)CCG>CCA	p.P86P	NXPH3_uc010wlw.1_Silent_p.P86P	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor	86	III.				neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					CCAACCGCCCGAACCACAGCC	0.627													44	28					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48603324	48603324	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:48603324C>T	uc010wmr.1	+	14	2156	c.1994C>T	c.(1993-1995)GCC>GTC	p.A665V	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	628					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GCTGAGGAGGCCAGGCCAGGG	0.592													27	103					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48735529	48735529	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:48735529G>A	uc002isl.2	+	5	653	c.573G>A	c.(571-573)AGG>AGA	p.R191R	ABCC3_uc002isk.3_Silent_p.R191R	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	191	Helical; Name=5; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCTGCTTCAGGGAGAAACCTC	0.567													78	72					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900748	51900748	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:51900748G>A	uc002iua.2	+	1	510	c.354G>A	c.(352-354)ATG>ATA	p.M118I	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	118					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GGGTTGCGATGATCCCCCAGA	0.607													28	153					0	0	1	0	0
DGKE	8526	broad.mit.edu	37	17	54926178	54926178	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:54926178G>A	uc002iur.2	+	6	1190	c.1010G>A	c.(1009-1011)CGA>CAA	p.R337Q	DGKE_uc002ius.1_Missense_Mutation_p.R337Q	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	337	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					CAGGTTTTGCGAAATGTAATG	0.408													56	35					0	0	1	0	0
MSI2	124540	broad.mit.edu	37	17	55478817	55478817	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:55478817C>T	uc002iuz.1	+	6	563	c.390C>T	c.(388-390)TTC>TTT	p.F130F	MSI2_uc010wnm.1_Silent_p.F108F|MSI2_uc002iva.2_Silent_p.F126F	NM_138962	NP_620412	Q96DH6	MSI2H_HUMAN	musashi 2 isoform a	130	RRM 2.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)|pancreas(1)	2	Breast(9;1.78e-08)			GBM - Glioblastoma multiforme(1;0.0025)		AGCAATATTTCGAGCAGTTTG	0.488			T	HOXA9	CML								15	85					0	0	1	0	0
CLTC	1213	broad.mit.edu	37	17	57724951	57724951	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:57724951T>A	uc002ixq.1	+	3	886	c.443T>A	c.(442-444)CTT>CAT	p.L148H	CLTC_uc002ixp.2_Missense_Mutation_p.L148H|CLTC_uc002ixr.1_Missense_Mutation_p.L152H	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	148	Globular terminal domain.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CATTCTAGCCTTGCAGGGTGC	0.388			T	ALK|TFE3	ALCL|renal 								21	87					0	0	1	0	0
CLTC	1213	broad.mit.edu	37	17	57733268	57733268	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:57733268C>T	uc002ixq.1	+	6	1292	c.849C>T	c.(847-849)CAC>CAT	p.H283H	CLTC_uc002ixp.2_Silent_p.H283H|CLTC_uc002ixr.1_Silent_p.H287H	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	283	Globular terminal domain.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GTTATATCCACCTCTATGATC	0.358			T	ALK|TFE3	ALCL|renal 								46	86					0	0	1	0	0
CA4	762	broad.mit.edu	37	17	58235697	58235697	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:58235697G>A	uc002iym.3	+	7	728	c.634G>A	c.(634-636)GAG>AAG	p.E212K	CA4_uc010wou.1_RNA	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	212					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CCCCAAGGAGGAGAAACTGAG	0.582													34	27					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60768087	60768087	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:60768087G>A	uc002jad.2	+	27	4379	c.3977G>A	c.(3976-3978)CGG>CAG	p.R1326Q	MRC2_uc002jae.2_Missense_Mutation_p.R397Q|MRC2_uc002jaf.2_Missense_Mutation_p.R192Q	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1326	Extracellular (Potential).|C-type lectin 8.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGCCAGAGTCGGGGCGCCTGG	0.602													10	64					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60814205	60814205	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:60814205G>A	uc010ddr.2	-	6	1262	c.1024C>T	c.(1024-1026)CAT>TAT	p.H342Y	MARCH10_uc002jag.3_Missense_Mutation_p.H342Y|MARCH10_uc010dds.2_Missense_Mutation_p.H380Y|MARCH10_uc002jah.2_Missense_Mutation_p.H341Y|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	342							ligase activity|zinc ion binding				0						CTTGAAGAATGACCTCTGCAA	0.458													127	82					0	0	1	0	0
CYB561	1534	broad.mit.edu	37	17	61511954	61511954	+	Missense_Mutation	SNP	C	T	T	rs77535447		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:61511954C>T	uc002jap.2	-	5	967	c.565G>A	c.(565-567)GGC>AGC	p.G189S	CYB561_uc002jaq.2_Missense_Mutation_p.G235S|CYB561_uc002jar.2_Missense_Mutation_p.G189S|CYB561_uc002jas.2_Missense_Mutation_p.G189S|CYB561_uc010ddt.2_3'UTR|CYB561_uc002jat.2_Missense_Mutation_p.G189S|CYB561_uc010wpf.1_Missense_Mutation_p.G136E|CYB561_uc010wpg.1_Missense_Mutation_p.G160S	NM_001915	NP_001906	P49447	CY561_HUMAN	cytochrome b-561	189	Cytochrome b561.				electron transport chain|transport	integral to plasma membrane	cytochrome-b5 reductase activity|ferric-chelate reductase activity|metal ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(1115;0.0689)		CTATACTTGCCCCTGCAGGGG	0.607													5	29					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61601685	61601685	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:61601685G>A	uc002jay.2	+	2	342	c.262G>A	c.(262-264)GGG>AGG	p.G88R	KCNH6_uc002jax.1_Missense_Mutation_p.G88R|KCNH6_uc010wpl.1_Intron|KCNH6_uc010wpm.1_Missense_Mutation_p.G88R|KCNH6_uc002jaz.1_Missense_Mutation_p.G88R	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	88	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GGCCCTGCTGGGGGCTGAGGA	0.632													18	100					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62026124	62026124	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:62026124G>A	uc002jds.1	-	16	3068	c.2991C>T	c.(2989-2991)GCC>GCT	p.A997A		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	997					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GCTGCACGCAGGCTGATGGGG	0.652													5	45					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62121504	62121504	+	Silent	SNP	G	A	A	rs8077780		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:62121504G>A	uc002jdz.2	-	22	2891	c.2778C>T	c.(2776-2778)CCC>CCT	p.P926P	uc002jdy.1_5'Flank	NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	926	Cytoplasmic (Potential).|KEN.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CGAAGTCGTCGGGGAGGGACC	0.597													15	90					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62132152	62132152	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:62132152G>A	uc002jdz.2	-	14	1822	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	570	Cytoplasmic (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						GGGACAGAAGGAAATTTTCCC	0.488													3	23					0	0	1	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62856581	62856581	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:62856581C>T	uc002jey.2	-	11	4214	c.3683G>A	c.(3682-3684)GGA>GAA	p.G1228E	LRRC37A3_uc010wqg.1_Missense_Mutation_p.G346E|LRRC37A3_uc002jex.1_Missense_Mutation_p.G205E|LRRC37A3_uc010wqf.1_Missense_Mutation_p.G266E|LRRC37A3_uc010dek.1_Missense_Mutation_p.G234E	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1228	Extracellular (Potential).					integral to membrane					0						GACGGCGTTTCCCGCTAACTT	0.572													44	95					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64216781	64216781	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:64216781G>A	uc002jfn.3	-	5	554	c.495C>T	c.(493-495)CTC>CTT	p.L165L		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	165	Sushi 3.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			TGTCCCGATAGAGGGAATTGT	0.423													25	120					0	0	1	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281769	71281769	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:71281769G>A	uc002jjn.2	-	2	1018	c.871C>T	c.(871-873)CCC>TCC	p.P291S	CDC42EP4_uc002jjo.2_Missense_Mutation_p.P291S|CDC42EP4_uc002jjp.1_Missense_Mutation_p.P221S	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	291					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			CCGGGGCTGGGGGCCGCTGCT	0.716													23	15					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72306183	72306183	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:72306183C>T	uc002jkf.2	+	11	1474	c.1375C>T	c.(1375-1377)CGG>TGG	p.R459W	DNAI2_uc002jkg.2_Intron|DNAI2_uc010dfp.2_RNA|uc002jkh.1_5'Flank|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	459					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CTTCTGCCTCCGGGTGCAGGA	0.607									Kartagener_syndrome				21	53					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72351348	72351348	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:72351348T>C	uc002jkm.3	+	20	3032	c.2894T>C	c.(2893-2895)GTT>GCT	p.V965A		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	965					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCCCTGGCTGTTCCCCCCAAC	0.657													9	99					0	0	1	0	0
CD300LF	146722	broad.mit.edu	37	17	72700889	72700889	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:72700889G>A	uc002jlg.2	-	2	213	c.110C>T	c.(109-111)ACC>ATC	p.T37I	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.T40I|CD300LF_uc010dfw.2_RNA|CD300LF_uc002jlh.2_Missense_Mutation_p.T37I|CD300LF_uc002jli.2_Missense_Mutation_p.T40I|CD300LF_uc010wra.1_Missense_Mutation_p.T37I|CD300LF_uc002jlj.1_Missense_Mutation_p.T40I	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	37	Ig-like V-type.|Extracellular (Potential).			T -> A (in Ref. 5; AAZ81566).		integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						ACACTGCACGGTCAAGGAGCC	0.512													88	74					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72921748	72921748	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:72921748C>T	uc010wrp.1	+	4	500	c.411C>T	c.(409-411)ATC>ATT	p.I137I	USH1G_uc002jme.1_5'Flank|USH1G_uc010wro.1_5'Flank|OTOP2_uc002jmf.1_Silent_p.I137I	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	137	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					CCATCAAGATCCTGCACCCCC	0.537													28	152					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72937809	72937809	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:72937809C>T	uc010wrr.1	+	2	395	c.395C>T	c.(394-396)TCC>TTC	p.S132F	OTOP3_uc010wrq.1_Missense_Mutation_p.S114F	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	132	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AAGGTCCTCTCCCTGCTTTGG	0.627													17	51					0	0	1	0	0
GGA3	23163	broad.mit.edu	37	17	73240699	73240700	+	Splice_Site	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:73240699_73240700CC>TT	uc002jni.1	-	4	309	c.300_splice	c.e4+1	p.K100_splice	GGA3_uc002jnj.1_Intron|GGA3_uc010wrw.1_Intron|GGA3_uc002jnk.1_Splice_Site_p.K28_splice|GGA3_uc010wrx.1_Intron|GGA3_uc010wry.1_Splice_Site_p.K28_splice|GGA3_uc010wrz.1_Intron	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3						intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			CGCTGACTGACCTTTGGAGAGA	0.48													36	187					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73555367	73555367	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:73555367C>T	uc002joh.2	+	6	560	c.406C>T	c.(406-408)CTG>TTG	p.L136L	LLGL2_uc002jog.1_Silent_p.L136L|LLGL2_uc010dgf.1_Silent_p.L136L|LLGL2_uc002joi.2_Silent_p.L136L|LLGL2_uc010dgg.1_Silent_p.L136L|LLGL2_uc002joj.2_Silent_p.L125L	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	136	WD 3.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CACCGTGGTCCTGCCACATTC	0.637													10	35					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004508	74004508	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:74004508C>T	uc002jqi.2	-	22	5006	c.4778G>A	c.(4777-4779)GGG>GAG	p.G1593E	EVPL_uc010wss.1_Missense_Mutation_p.G1615E|EVPL_uc010wst.1_Missense_Mutation_p.G1063E	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1593	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTGCAGCCGCCCACACTCCTG	0.687													7	11					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74019436	74019436	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:74019436C>T	uc002jqi.2	-	4	645	c.417G>A	c.(415-417)AAG>AAA	p.K139K	EVPL_uc010wss.1_Silent_p.K139K|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	139	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCAGCACCATCTTCTCGTACA	0.627													48	77					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76540072	76540072	+	Missense_Mutation	SNP	G	A	A	rs141150806	by1000genomes	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:76540072G>A	uc002jvv.1	-	13	1611	c.1505C>T	c.(1504-1506)TCG>TTG	p.S502L						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CGGGTTGGCCGACCAGTCCTG	0.493													27	97					0	0	1	0	0
USP36	57602	broad.mit.edu	37	17	76832252	76832252	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:76832252G>A	uc002jvz.1	-	3	519	c.194C>T	c.(193-195)CCC>CTC	p.P65L	USP36_uc002jwa.1_Missense_Mutation_p.P65L|USP36_uc002jwd.1_Missense_Mutation_p.P65L	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	65					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			CTCTGTTTTGGGGTTGAGCAA	0.547													34	46					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78322033	78322033	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:78322033C>T	uc002jyh.1	+	4	4340	c.4117C>T	c.(4117-4119)CTT>TTT	p.L1373F		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TGCAGATTTCCTTCAGGCACA	0.587													19	117					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79166162	79166162	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:79166162C>T	uc002jzp.1	-	21	2787	c.2587G>A	c.(2587-2589)GAG>AAG	p.E863K	AZI1_uc002jzm.1_Missense_Mutation_p.E290K|AZI1_uc002jzn.1_Missense_Mutation_p.E860K|AZI1_uc002jzo.1_Missense_Mutation_p.E824K|AZI1_uc010wum.1_Missense_Mutation_p.E827K|AZI1_uc002jzq.2_Missense_Mutation_p.E11K	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	863					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTCTCCAGCTCCAGCTGCTGC	0.716													5	16					0	0	1	0	0
BAHCC1	57597	broad.mit.edu	37	17	79428108	79428108	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:79428108C>T	uc002kaf.2	+	24	6419	c.6419C>T	c.(6418-6420)CCC>CTC	p.P2140L	BAHCC1_uc002kae.2_Missense_Mutation_p.P1370L	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	2140							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			GCCCTGTTCCCCGTGCACAGC	0.697													3	17					0	0	1	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79974675	79974676	+	Splice_Site	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:79974675_79974676GG>AA	uc002kcx.2	+	14	1503	c.1406_splice	c.e14-1	p.G469_splice	ASPSCR1_uc002kcw.1_Splice_Site_p.G469_splice|ASPSCR1_uc002kcy.2_Splice_Site_p.G563_splice|ASPSCR1_uc002kcz.2_Splice_Site_p.G363_splice|ASPSCR1_uc002kda.2_Splice_Site_p.G417_splice	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,								protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCTCCCTGCAGGTGTCTACCTG	0.673			T	TFE3	alveolar soft part sarcoma								14	19					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80040926	80040926	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr17:80040926G>A	uc002kdu.2	-	33	5748	c.5631C>T	c.(5629-5631)TCC>TCT	p.S1877S	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1877	Beta-ketoacyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	AGAAGGTCTTGGAGATGGCCG	0.642													32	36					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2885114	2885114	+	Missense_Mutation	SNP	G	A	A	rs147386217		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:2885114G>A	uc002kln.2	+	3	569	c.410G>A	c.(409-411)CGA>CAA	p.R137Q		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	137					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GCTCGGCCTCGAAACAGCTTG	0.512													22	54					0	0	1	0	0
TMEM200C	645369	broad.mit.edu	37	18	5892008	5892008	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:5892008G>A	uc002kmx.1	-	1	96	c.55C>T	c.(55-57)CGC>TGC	p.R19C		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	19						integral to membrane					0						CTTGGGGGGCGGAGTGGATCC	0.607													8	21					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6959408	6959408	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:6959408G>A	uc002knm.2	-	54	7804	c.7710C>T	c.(7708-7710)CTC>CTT	p.L2570L	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Silent_p.L23L|LAMA1_uc010wzj.1_Silent_p.L2046L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2570	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAGCGTGCAGGAGAGCTTTTC	0.557													24	70					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6986186	6986186	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:6986186C>T	uc002knm.2	-	37	5423	c.5329G>A	c.(5329-5331)GAA>AAA	p.E1777K	LAMA1_uc010wzj.1_Missense_Mutation_p.E1253K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1777	Domain II and I.|Potential.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGTTGCTTTCCTGCATCTTT	0.473													29	89					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7034516	7034516	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:7034516G>A	uc002knm.2	-	14	2107	c.2013C>T	c.(2011-2013)ATC>ATT	p.I671I	LAMA1_uc010wzj.1_Silent_p.I147I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	671	Laminin IV type A 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTTGGCTCTGATCAAAAGAT	0.383													8	31					0	0	1	0	0
PTPRM	5797	broad.mit.edu	37	18	8244150	8244150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:8244150G>A	uc002knn.3	+	15	2898	c.2395G>A	c.(2395-2397)GGC>AGC	p.G799S	PTPRM_uc010dkv.2_Missense_Mutation_p.G799S|PTPRM_uc010wzl.1_Missense_Mutation_p.G586S	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	799	Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TGCTGAGCAGGGCACAAACTG	0.488													20	72					0	0	1	0	0
KIAA0802	23255	broad.mit.edu	37	18	8806976	8806976	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:8806976G>A	uc002knr.2	+	11	2664	c.2522G>A	c.(2521-2523)CGA>CAA	p.R841Q	KIAA0802_uc002knq.2_Missense_Mutation_p.R800Q|KIAA0802_uc002kns.2_Missense_Mutation_p.R171Q	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1151	Potential.										0						GAGCGTGCCCGACTACGGCTG	0.637													11	22					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887382	9887382	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:9887382C>T	uc002koi.3	+	2	1355	c.906C>T	c.(904-906)TCC>TCT	p.S302S	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Silent_p.S235S	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	302	13.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						TCCCCAAGTCCCTAGAGGAAG	0.602													20	59					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10672717	10672717	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:10672717G>A	uc002kor.3	-	13	1987	c.1847C>T	c.(1846-1848)CCC>CTC	p.P616L	FAM38B_uc002koq.2_Missense_Mutation_p.P451L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2659						integral to membrane	ion channel activity			ovary(1)	1						CAGACTTGGGGGACTGACTTT	0.458													26	77					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14533108	14533108	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:14533108A>G	uc010dln.2	-	5	1461	c.1007T>C	c.(1006-1008)CTA>CCA	p.L336P	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	336										skin(3)	3						CTGTCCAGATAGATCTTGAGA	0.363													34	119					0	0	1	0	0
GATA6	2627	broad.mit.edu	37	18	19762738	19762738	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:19762738G>A	uc002ktt.1	+	5	1714	c.1449G>A	c.(1447-1449)ATG>ATA	p.M483I	GATA6_uc002ktu.1_Missense_Mutation_p.M483I	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	483					blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			CACTTGCTATGAAAAAAGAGG	0.328													5	15					0	0	1	0	0
C18orf45	85019	broad.mit.edu	37	18	20877975	20877975	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:20877975G>A	uc002kuf.2	-	15	996	c.887C>T	c.(886-888)TCC>TTC	p.S296F	C18orf45_uc010xaq.1_Intron|C18orf45_uc010xar.1_RNA|C18orf45_uc002kug.2_RNA|C18orf45_uc002kuh.2_RNA|C18orf45_uc002kue.2_RNA	NM_032933	NP_116322	Q24JQ0	CR045_HUMAN	hypothetical protein LOC85019	296						integral to membrane					0	all_cancers(21;0.000238)|all_epithelial(16;5.29e-06)|Lung NSC(20;0.00925)|Colorectal(14;0.0202)|all_lung(20;0.0255)|Ovarian(20;0.127)					TCTTGTTCAGGAGCTCTTCCG	0.577													13	34					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21119346	21119346	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:21119346T>A	uc002kum.3	-	19	3158	c.2884A>T	c.(2884-2886)ATC>TTC	p.I962F	NPC1_uc010xaz.1_Missense_Mutation_p.I695F	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	962			NITDQF -> S (in NPC1).		autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TGGTCAGTGATATTGTCCACT	0.433													7	22					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21390454	21390454	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:21390454C>T	uc002kuq.2	+	13	1814	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	LAMA3_uc002kur.2_Silent_p.F576F	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	576	Domain V.|Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTTATGATTTCCCCCACTGCC	0.562													16	33					0	0	1	0	0
TAF4B	6875	broad.mit.edu	37	18	23845181	23845181	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:23845181C>G	uc002kvu.3	+	2	880	c.391C>G	c.(391-393)CCT>GCT	p.P131A	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.P131A	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	131					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			GTTGGTATCTCCTCAGCAAAC	0.408													3	111					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934626	28934626	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:28934626C>T	uc002kwp.2	+	15	2679	c.2467C>T	c.(2467-2469)CCT>TCT	p.P823S	DSG1_uc010xbp.1_Missense_Mutation_p.P182S	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	823	Desmoglein repeat 1.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGTACTGCATCCTAAGCCTAT	0.517													36	93					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28965101	28965101	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:28965101G>A	uc002kwq.2	+	2	186	c.51G>A	c.(49-51)GTG>GTA	p.V17V	DSG4_uc002kwr.2_Silent_p.V17V	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	17					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAAAACAGGTGGTGATGGAAG	0.199													10	38					0	0	1	0	0
KIAA1012	22878	broad.mit.edu	37	18	29493477	29493477	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:29493477G>A	uc002kxc.3	-	5	990	c.626C>T	c.(625-627)TCA>TTA	p.S209L	KIAA1012_uc002kxb.3_Missense_Mutation_p.S155L|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Missense_Mutation_p.S209L	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	209					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						TTCATAAATTGATTCAGCTCT	0.308													3	10					0	0	1	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093412	30093412	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:30093412C>T	uc010dmc.2	+	1		c.1787C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						AGCTCCCTTGCTGAACCCTGA	0.527													25	46					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30257198	30257198	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:30257198C>T	uc002kxm.1	-	8	2072	c.1684G>A	c.(1684-1686)GGC>AGC	p.G562S	KLHL14_uc010dmd.1_Missense_Mutation_p.G111S	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	562	Kelch 5.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						CAGCCAGGGCCACTTCGACCC	0.473													25	64					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30950108	30950108	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:30950108C>T	uc002kxn.2	-	5	396	c.254G>A	c.(253-255)AGC>AAC	p.S85N	C18orf34_uc010xbr.1_Missense_Mutation_p.S85N|C18orf34_uc010dmf.1_Missense_Mutation_p.S85N|C18orf34_uc002kxo.2_Missense_Mutation_p.S85N|C18orf34_uc002kxp.2_Missense_Mutation_p.S85N	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	85										ovary(1)	1						TACGGCACAGCTGTGACGTCG	0.373													7	31					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531195	42531195	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:42531195G>A	uc010dni.2	+	4	2186	c.1890G>A	c.(1888-1890)GCG>GCA	p.A630A		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	630						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GCAATTTAGCGAAGTTGGCCC	0.512									Schinzel-Giedion_syndrome				16	42					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44030289	44030289	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:44030289C>T	uc002lcb.1	+	5	697	c.646C>T	c.(646-648)CCT>TCT	p.P216S	RNF165_uc002lby.1_Missense_Mutation_p.P149S|RNF165_uc010dnn.1_Missense_Mutation_p.P12S	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	216							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		CTACCCTTACCCTCAGCTTCA	0.512													22	49					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44260332	44260332	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:44260332G>A	uc002lcj.1	-	7	1372	c.804C>T	c.(802-804)TTC>TTT	p.F268F	ST8SIA5_uc002lci.1_Silent_p.F115F|ST8SIA5_uc010xcy.1_Silent_p.F304F|ST8SIA5_uc010xcz.1_Silent_p.F237F	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	268	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GCGGCGATTCGAAGTCGTCCA	0.617													9	16					0	0	1	0	0
KATNAL2	83473	broad.mit.edu	37	18	44589343	44589343	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:44589343G>A	uc002lco.2	+	6	528	c.334G>A	c.(334-336)GGC>AGC	p.G112S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Missense_Mutation_p.G72S	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	184						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						TCCCTTTCAGGGCCAAATCAT	0.438													7	41					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567440	45567440	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:45567440G>A	uc002lda.2	-	1	55	c.39C>T	c.(37-39)TTC>TTT	p.F13F	ZBTB7C_uc002ldb.2_Silent_p.F13F|ZBTB7C_uc010dnu.2_Silent_p.F22F|ZBTB7C_uc010dnv.2_Silent_p.F35F|ZBTB7C_uc010dnw.2_Silent_p.F13F|ZBTB7C_uc010dnx.1_Silent_p.F13F|ZBTB7C_uc010dny.1_Silent_p.F13F|ZBTB7C_uc010dnz.1_Silent_p.F35F|ZBTB7C_uc010dob.1_Silent_p.F13F|ZBTB7C_uc010doc.1_Silent_p.F22F|ZBTB7C_uc010dod.1_Silent_p.F35F|ZBTB7C_uc010doe.1_Silent_p.F13F|ZBTB7C_uc010dof.1_Silent_p.F13F|ZBTB7C_uc010dog.1_Silent_p.F13F|ZBTB7C_uc010doh.1_Silent_p.F22F|ZBTB7C_uc010doi.1_Silent_p.F13F|ZBTB7C_uc010doj.1_Silent_p.F22F|ZBTB7C_uc010dok.1_Silent_p.F62F|ZBTB7C_uc010dol.1_Silent_p.F22F|ZBTB7C_uc010doa.1_Silent_p.F35F|ZBTB7C_uc010don.1_Silent_p.F21F|ZBTB7C_uc010doo.1_Silent_p.F13F|ZBTB7C_uc010dop.1_Silent_p.F13F|ZBTB7C_uc010doq.1_Silent_p.F22F|ZBTB7C_uc010dor.1_Silent_p.F35F|ZBTB7C_uc010dos.1_Silent_p.F13F|ZBTB7C_uc010dot.1_Silent_p.F13F|ZBTB7C_uc010dou.1_Silent_p.F22F|ZBTB7C_uc010dom.1_Silent_p.F22F	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	13						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTGGTTGGGGAAGGGAATGC	0.572													12	30					0	0	1	0	0
ACAA2	10449	broad.mit.edu	37	18	47320670	47320670	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:47320670G>A	uc002ldw.3	-	5	954	c.557C>T	c.(556-558)TCA>TTA	p.S186L	ACAA2_uc002ldx.3_Missense_Mutation_p.S183L	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	186					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						TCTCTGCTGTGACTGCAGGGC	0.373													9	33					0	0	1	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024414	55024414	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:55024414C>T	uc002lgn.2	+	3	930	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	191	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		GTTGCAATTTCGCCCCTACGG	0.403													16	39					0	0	1	0	0
RAX	30062	broad.mit.edu	37	18	56939824	56939824	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:56939824C>T	uc002lhx.2	-	2	499	c.312G>A	c.(310-312)AAG>AAA	p.K104K	RAX_uc010dpp.2_Intron	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	104					visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		CCCCGGGCTCCTTGGGGCAGT	0.697													10	24					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221584	59221584	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:59221584G>A	uc010dps.1	+	11	2074	c.2062G>A	c.(2062-2064)GAG>AAG	p.E688K	CDH20_uc002lif.2_Missense_Mutation_p.E682K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	688	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				GAACCCCCGGGAGGCGCAGGC	0.682													28	56					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221772	59221772	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:59221772C>T	uc010dps.1	+	11	2262	c.2250C>T	c.(2248-2250)TTC>TTT	p.F750F	CDH20_uc002lif.2_Silent_p.F744F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	750	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CGTATATGTTCGAGGGGGACG	0.647													7	11					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65181047	65181047	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:65181047G>A	uc002lke.1	-	2	2053	c.829C>T	c.(829-831)CAT>TAT	p.H277Y		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	267						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TCAACAATATGATTCAATAGA	0.413													25	71					0	0	1	0	0
CYB5A	1528	broad.mit.edu	37	18	71930615	71930615	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:71930615G>A	uc002lli.2	-	2	338	c.227C>T	c.(226-228)TCC>TTC	p.S76F	CYB5A_uc002llh.2_Missense_Mutation_p.S76F	NM_148923	NP_683725	P00167	CYB5_HUMAN	cytochrome b-5 isoform 1	76	Cytochrome b5 heme-binding.				electron transport chain|water-soluble vitamin metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	aldo-keto reductase (NADP) activity|cytochrome-c oxidase activity|enzyme binding|heme binding				0		Esophageal squamous(42;0.0749)|Prostate(75;0.157)|Melanoma(33;0.211)			Methoxyflurane(DB01028)	GAATGTTTTGGACATTTCCCT	0.463													16	35					0	0	1	0	0
CNDP1	84735	broad.mit.edu	37	18	72228148	72228148	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:72228148G>A	uc002llq.2	+	4	572	c.361G>A	c.(361-363)GAT>AAT	p.D121N	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	121					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		ACTGGGGAGCGATCCCACGAA	0.572													41	88					0	0	1	0	0
CTDP1	9150	broad.mit.edu	37	18	77488959	77488959	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr18:77488959C>T	uc002lnh.1	+	11	2617	c.2470C>T	c.(2470-2472)CAG>TAG	p.Q824*	CTDP1_uc002lni.1_Intron|CTDP1_uc010drd.1_Nonsense_Mutation_p.Q824*	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	824					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		GCCTGACGCTCAGGACGGAGA	0.527													98	185					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1042114	1042114	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:1042114C>T	uc002lqw.3	+	5	585	c.354C>T	c.(352-354)GCC>GCT	p.A118A	ABCA7_uc010dsb.1_5'Flank|ABCA7_uc010dsa.2_Silent_p.A118A	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	118	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCAGTGCCCACAGGACGC	0.721													4	16					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1053431	1053431	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:1053431C>T	uc002lqw.3	+	24	3555	c.3324C>T	c.(3322-3324)GCC>GCT	p.A1108A	ABCA7_uc010dsb.1_Silent_p.A970A	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1108					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACACGGGTGCCCATGACGGCA	0.677													6	10					0	0	1	0	0
SBNO2	22904	broad.mit.edu	37	19	1119128	1119128	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:1119128A>T	uc002lrk.3	-	14	1647	c.1409T>A	c.(1408-1410)ATG>AAG	p.M470K	SBNO2_uc002lrj.3_Missense_Mutation_p.M413K|SBNO2_uc010dse.2_Missense_Mutation_p.M463K|SBNO2_uc010xgj.1_Intron|SBNO2_uc010dsf.2_Missense_Mutation_p.M413K	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	470					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGACCTTCATGTCCATGGC	0.667													5	15					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3730690	3730690	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:3730690G>A	uc010xhv.1	+	4	656	c.656G>A	c.(655-657)AGG>AAG	p.R219K	TJP3_uc010xhs.1_Missense_Mutation_p.R200K|TJP3_uc010xht.1_Missense_Mutation_p.R164K|TJP3_uc010xhu.1_Missense_Mutation_p.R209K|TJP3_uc010xhw.1_Missense_Mutation_p.R219K	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	200	PDZ 2.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGTGAAGAGGAGAGACAGC	0.567													13	38					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5751693	5751693	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:5751693C>T	uc002mda.2	+	12	1084	c.1023C>T	c.(1021-1023)GCC>GCT	p.A341A	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	341	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGACGTGGCCCTGATGTTCA	0.433													13	23					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5768206	5768206	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:5768206C>T	uc002mda.2	+	18	1648	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I	TMEM146_uc010duj.1_Silent_p.I187I	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	529	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCATGGGCATCCTGGACCCCT	0.522													14	28					0	0	1	0	0
DUS3L	56931	broad.mit.edu	37	19	5786495	5786495	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:5786495G>A	uc002mdc.2	-	10	1642	c.1545C>T	c.(1543-1545)ACC>ACT	p.T515T	PRR22_uc002mdb.1_5'Flank|PRR22_uc010xiv.1_5'Flank|DUS3L_uc002mdd.2_Silent_p.T273T|DUS3L_uc010duk.2_Silent_p.T180T	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	515					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						TCATGATCCCGGTGACACCAG	0.582													7	21					0	0	1	0	0
ACSBG2	81616	broad.mit.edu	37	19	6147677	6147677	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:6147677C>T	uc002mef.1	+	3	515	c.288C>T	c.(286-288)TCC>TCT	p.S96S	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Silent_p.S96S|ACSBG2_uc002meh.1_Silent_p.S96S|ACSBG2_uc002mei.1_Silent_p.S46S|ACSBG2_uc010xiz.1_Silent_p.S96S	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	96					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CTGCAAAATCCTTGATCAAGG	0.333													23	54					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6681967	6681967	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:6681967G>A	uc002mfm.2	-	35	4397	c.4335C>T	c.(4333-4335)ATC>ATT	p.I1445I	C3_uc002mfl.2_Silent_p.I181I	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1445	Properdin-binding.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCAGGTAGATGATGAGGGTGT	0.517													39	80					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6690717	6690717	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:6690717C>T	uc002mfm.2	-	27	3474	c.3412G>A	c.(3412-3414)GAG>AAG	p.E1138K	C3_uc002mfl.2_5'UTR	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1138					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATGTCTTTCTCGTTGTTGTTC	0.532													9	27					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6694466	6694466	+	Missense_Mutation	SNP	C	T	T	rs146026441	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:6694466C>T	uc002mfm.2	-	24	3192	c.3130G>A	c.(3130-3132)GGG>AGG	p.G1044R	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1044					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCCAAGGCCCCCTGCCGCTTC	0.612													21	42					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7267773	7267773	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:7267773G>A	uc002mgd.1	-	2	344	c.235C>T	c.(235-237)CCC>TCC	p.P79S	INSR_uc002mge.1_Missense_Mutation_p.P79S|INSR_uc002mgf.2_Missense_Mutation_p.P79S	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	79					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATGAGTTTGGGGAAACTGAGG	0.512													164	346					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7670197	7670197	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:7670197G>T	uc002mgv.3	+	2	335	c.234G>T	c.(232-234)CTG>CTT	p.L78L	KIAA1543_uc002mgu.3_Silent_p.L78L	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	78					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CACGGCTGCTGCTCTCAGCCG	0.667													9	107					2.80697e-09	2.84172e-09	1	1	0
FBN3	84467	broad.mit.edu	37	19	8140033	8140033	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:8140033A>T	uc002mjf.2	-	60	7645	c.7624T>A	c.(7624-7626)TGT>AGT	p.C2542S	FBN3_uc002mje.2_Missense_Mutation_p.C338S	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2542	EGF-like 42; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGTTCTGACAGCCATGCTGG	0.607													28	87					0	0	1	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953520	8953520	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:8953520G>A	uc002mko.2	+	1	252	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	56	Transcription repressor.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CCATCAATGGGAGGAGAGCTT	0.512													22	50					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9010664	9010664	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9010664G>A	uc002mkp.2	-	38	39201	c.38997C>T	c.(38995-38997)TCC>TCT	p.S12999S	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13001	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCTGGGGAGGGAGGATGGAG	0.488													6	26					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057220	9057220	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9057220G>A	uc002mkp.2	-	3	30430	c.30226C>T	c.(30226-30228)CTG>TTG	p.L10076L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10078	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCCACTCAGATTTGGAGAT	0.473													30	58					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058301	9058301	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9058301C>T	uc002mkp.2	-	3	29349	c.29145G>A	c.(29143-29145)TGG>TGA	p.W9715*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9717	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGGCTCGTCCATGACAGAC	0.468													14	30					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065535	9065535	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9065535G>A	uc002mkp.2	-	3	22115	c.21911C>T	c.(21910-21912)TCC>TTC	p.S7304F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7306	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTTGTGGTGGATATTTCTGG	0.463													20	37					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066247	9066247	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9066247G>A	uc002mkp.2	-	3	21403	c.21199C>T	c.(21199-21201)CCA>TCA	p.P7067S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7069	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGAGTGTGGAAATCTCTGA	0.502													27	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9068965	9068965	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9068965G>A	uc002mkp.2	-	3	18685	c.18481C>T	c.(18481-18483)CCT>TCT	p.P6161S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6163	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACCCCAGAAGGACCTGTTTGT	0.493													12	39					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077142	9077142	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9077142C>T	uc002mkp.2	-	3	10508	c.10304G>A	c.(10303-10305)GGG>GAG	p.G3435E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3436	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGTCACTCCCAGATGTCTG	0.458													38	77					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082369	9082369	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9082369G>A	uc002mkp.2	-	1	9650	c.9446C>T	c.(9445-9447)TCA>TTA	p.S3149L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3150	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCAGGAACTGAAATAGAGCT	0.458													31	47					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084542	9084542	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9084542C>T	uc002mkp.2	-	1	7477	c.7273G>A	c.(7273-7275)GCC>ACC	p.A2425T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2425	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGAGGTGGCTGTATTTGTC	0.502													11	25					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204043	9204043	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9204043G>A	uc010xkj.1	+	1	123	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TGGTCGTGGGGAACCTGCTCA	0.537													15	41					0	0	1	0	0
OR7G1	125962	broad.mit.edu	37	19	9225612	9225612	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9225612C>T	uc002mks.1	-	1	828	c.828G>A	c.(826-828)GTG>GTA	p.V276V		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CAGTGTACATCACTGAAGCCA	0.443													24	49					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325243	9325243	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9325243C>T	uc002mla.1	-	1	271	c.271G>A	c.(271-273)GAC>AAC	p.D91N		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TAGGAGATGTCTTTGCTCCGT	0.488													23	48					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	T	T	rs148650284		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:9577542C>T	uc002mlp.1	-	10	2291	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R588Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	694					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CATGGAATTTCGAAAGGAATT	0.378													36	83					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11170485	11170485	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:11170485C>T	uc002mqf.3	+	33	4976	c.4692C>T	c.(4690-4692)ATC>ATT	p.I1564I	SMARCA4_uc010dxp.2_Silent_p.I1564I|SMARCA4_uc010dxo.2_Silent_p.I1596I|SMARCA4_uc010dxq.2_Silent_p.I1531I|SMARCA4_uc010dxr.2_Silent_p.I1530I|SMARCA4_uc002mqj.3_Silent_p.I1534I|SMARCA4_uc010dxs.2_Silent_p.I1533I|SMARCA4_uc002mqh.3_Silent_p.I654I	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1564					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GGCAGAAAATCgagaaggagg	0.413			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				4	10					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11332895	11332895	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:11332895G>A	uc002mqs.3	-	27	3311	c.3270C>T	c.(3268-3270)GAC>GAT	p.D1090D	DOCK6_uc010xlq.1_Silent_p.D429D	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1090					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TCACCTTGGGGTCCGGGGCTT	0.612													3	13					0	0	1	0	0
TSPAN16	26526	broad.mit.edu	37	19	11409563	11409563	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:11409563G>C	uc002mqv.1	+	3	433	c.283G>C	c.(283-285)GTT>CTT	p.V95L	TSPAN16_uc002mqu.1_RNA	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	95	Helical; (Potential).					integral to membrane				skin(1)	1						CCTGTCAATGGTTATTGTCCT	0.512													19	71					0	0	1	0	0
ECSIT	51295	broad.mit.edu	37	19	11624724	11624724	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:11624724G>A	uc002msb.2	-	3	543	c.409C>T	c.(409-411)CCC>TCC	p.P137S	ECSIT_uc002msa.1_5'Flank|ECSIT_uc010dyc.1_Missense_Mutation_p.P137S|ECSIT_uc010dyd.2_Missense_Mutation_p.P137S|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	137					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						ACCTCCTTGGGGAAGATGTTG	0.592													12	33					0	0	1	0	0
ZNF441	126068	broad.mit.edu	37	19	11892352	11892352	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:11892352C>T	uc010dyj.2	+	4	1907	c.1713C>T	c.(1711-1713)CTC>CTT	p.L571L	ZNF441_uc002msn.3_Silent_p.L527L	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	571	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TATCTGATCTCTCAAGCTTTC	0.413													4	13					0	0	1	0	0
ZNF564	163050	broad.mit.edu	37	19	12637866	12637866	+	Silent	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:12637866A>C	uc002mty.2	-	4	1266	c.1056T>G	c.(1054-1056)GTT>GTG	p.V352V	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	352	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATGTGTTCGAACATTACTGG	0.408													32	50					0	0	1	0	0
TRMT1	55621	broad.mit.edu	37	19	13220226	13220226	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:13220226G>A	uc002mwj.2	-	11	1616	c.1366C>T	c.(1366-1368)CAC>TAC	p.H456Y	TRMT1_uc010xmy.1_Missense_Mutation_p.H60Y|TRMT1_uc002mwk.2_Missense_Mutation_p.H427Y|TRMT1_uc002mwl.3_Missense_Mutation_p.H456Y|TRMT1_uc010xmz.1_Missense_Mutation_p.H242Y	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	456							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		GTGTTGCAGTGGATGGTGCTG	0.637													28	58					0	0	1	0	0
CCDC130	81576	broad.mit.edu	37	19	13873722	13873722	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:13873722C>T	uc002mxb.1	+	11	1534	c.1031C>T	c.(1030-1032)CCC>CTC	p.P344L	CCDC130_uc002mxc.1_Missense_Mutation_p.P344L|CCDC130_uc002mxd.1_Missense_Mutation_p.P199L|CCDC130_uc010dzf.1_Missense_Mutation_p.P238L|MRI1_uc002mxe.2_5'Flank|MRI1_uc002mxf.2_5'Flank	NM_030818	NP_110445	P13994	CC130_HUMAN	coiled-coil domain containing 130	344					response to virus		protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.02e-23)|Epithelial(5;2.58e-18)			ACTGAGACCCCCAAGTGCAGC	0.697													12	18					0	0	1	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941124	13941124	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:13941124G>A	uc002mxh.1	+	13	2419	c.2230G>A	c.(2230-2232)GAC>AAC	p.D744N	ZSWIM4_uc010xng.1_Missense_Mutation_p.D667N	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	744							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			ACTGCAGCTGGACACATCGCG	0.627													14	40					0	0	1	0	0
C19orf57	79173	broad.mit.edu	37	19	14000673	14000673	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:14000673G>A	uc002mxl.1	-	6	1055	c.996C>T	c.(994-996)TCC>TCT	p.S332S	C19orf57_uc002mxk.1_Silent_p.S214S|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	332					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			TCCCGAGGGAGGAGCATCCCA	0.662													12	21					0	0	1	0	0
RFX1	5989	broad.mit.edu	37	19	14080838	14080838	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:14080838G>T	uc002mxv.2	-	10	1736	c.1464C>A	c.(1462-1464)TTC>TTA	p.F488L	RFX1_uc010dzi.2_Missense_Mutation_p.F488L	NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	488	RFX-type winged-helix.				immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			GCAGGCCCATGAAGACGGAGC	0.647													17	35					8.34094e-07	8.42152e-07	1	1	0
PRKACA	5566	broad.mit.edu	37	19	14204497	14204497	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:14204497A>C	uc002myc.2	-	9	1073	c.873T>G	c.(871-873)GAT>GAG	p.D291E	PRKACA_uc002myb.2_Missense_Mutation_p.D283E	NM_002730	NP_002721	P17612	KAPCA_HUMAN	cAMP-dependent protein kinase catalytic subunit	291	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding			lung(1)	1						GGTTCTTGATATCGTTGACCC	0.547													41	105					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794496	15794496	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:15794496C>G	uc002nbl.2	+	7	902	c.841C>G	c.(841-843)CAG>GAG	p.Q281E		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCTCCCCACTCAGGGTATTGA	0.527													29	79					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860018	16860018	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:16860018C>T	uc002neu.3	+	6	987	c.565C>T	c.(565-567)CTT>TTT	p.L189F	NWD1_uc002net.3_Missense_Mutation_p.L54F|NWD1_uc002nev.3_5'UTR			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	189							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CACCGTCTTCCTTAGAGAGAT	0.582													23	46					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16875936	16875936	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:16875936C>T	uc002neu.3	+	10	2765	c.2343C>T	c.(2341-2343)TCC>TCT	p.S781S	NWD1_uc002net.3_Silent_p.S646S|NWD1_uc002nev.3_Silent_p.S575S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	781							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ACCTGGACTCCCCTGAGGTTG	0.627													10	38					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17088300	17088300	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:17088300G>A	uc002nfb.2	-	15	1809	c.1777C>T	c.(1777-1779)CAT>TAT	p.H593Y		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	546						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ACGGCCAGATGAAGAGAGGTC	0.587													9	38					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17283614	17283614	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:17283614C>T	uc010eak.2	+	13	2134	c.1982C>T	c.(1981-1983)GCC>GTC	p.A661V	MYO9B_uc002nfi.2_Missense_Mutation_p.A661V|MYO9B_uc002nfj.1_Missense_Mutation_p.A661V	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	661	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GACATCGTGGCCCTGCTGCGG	0.672													22	66					0	0	1	0	0
ANKLE1	126549	broad.mit.edu	37	19	17393774	17393774	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:17393774C>T	uc002nga.2	+	4	699	c.423C>T	c.(421-423)ATC>ATT	p.I141I	C19orf62_uc010ean.2_RNA|ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.I163I|ANKLE1_uc010xpn.1_Silent_p.I195I|ANKLE1_uc002nfy.2_Silent_p.I130I|ANKLE1_uc002nfz.2_5'UTR	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	141						nuclear envelope					0						GGACCCGGATCGGGGCAGAGA	0.687											OREG0025341	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	4					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18378207	18378207	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:18378207T>A	uc002nin.2	-	3	359	c.143A>T	c.(142-144)GAG>GTG	p.E48V	KIAA1683_uc010ebn.2_Missense_Mutation_p.E48V|KIAA1683_uc010xqe.1_Missense_Mutation_p.E2V	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	48						mitochondrion				ovary(2)	2						AGGCGCTTTCTCCATTTTGTC	0.652													52	97					0	0	1	0	0
NDUFA13	51079	broad.mit.edu	37	19	19627027	19627027	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:19627027G>A	uc010xqy.1	+	1	488	c.229G>A	c.(229-231)GAA>AAA	p.E77K	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.E77K|NDUFA13_uc010xqx.1_Missense_Mutation_p.E77K	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CCCGGGACCGGAAGTGTGGGA	0.622													23	35					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19654188	19654188	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:19654188C>T	uc002nmv.3	+	7	1194	c.1109C>T	c.(1108-1110)TCG>TTG	p.S370L	CILP2_uc002nmw.3_Missense_Mutation_p.S376L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	370	Ig-like C2-type.					proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GCCGTGCGCTCGGGCACTGCC	0.652													18	35					0	0	1	0	0
CILP2	148113	broad.mit.edu	37	19	19654982	19654982	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:19654982G>A	uc002nmv.3	+	8	1713	c.1628G>A	c.(1627-1629)CGA>CAA	p.R543Q	CILP2_uc002nmw.3_Missense_Mutation_p.R549Q	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	543						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TTTGATCCTCGAGGTGCCGGC	0.607													21	50					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19765491	19765491	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:19765491G>A	uc002nnh.3	-	13	1702	c.1674C>T	c.(1672-1674)ACC>ACT	p.T558T	ATP13A1_uc002nne.2_5'Flank|ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Silent_p.T440T	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	558	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TGGACACTGGGGTCACCTCCT	0.637													19	37					0	0	1	0	0
ZNF737	100129842	broad.mit.edu	37	19	20728643	20728643	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:20728643C>T	uc002npa.2	-	4	546	c.366G>A	c.(364-366)GAG>GAA	p.E122E		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	122					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCACCTTACACTCATCTACAC	0.318													6	24					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	20959179	20959179	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:20959179G>A	uc002npe.2	+	1		c.70G>A								Homo sapiens zinc finger protein 66, mRNA (cDNA clone MGC:87430 IMAGE:5270688), complete cds.																		TAGAGGCCCAGCCTCTGTGGC	0.597													15	35					0	0	1	0	0
ZNF429	353088	broad.mit.edu	37	19	21720863	21720863	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:21720863C>T	uc002nqd.1	+	4	2145	c.2008C>T	c.(2008-2010)CGA>TGA	p.R670*	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	670					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						gtcaggagatcgagaccgtcc	0.035													4	11					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22575725	22575725	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:22575725G>A	uc002nqt.2	-	4	434	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TCACTTTTTGGAAATAATTTT	0.299													3	14					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940264	22940264	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:22940264G>A	uc010xrh.1	-	5	2174	c.2174C>T	c.(2173-2175)TCC>TTC	p.S725F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGTAGGATTTCTCTCC	0.348													6	16					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23927413	23927413	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:23927413C>T	uc002nrk.3	-	4	1081	c.939G>A	c.(937-939)AAG>AAA	p.K313K	ZNF681_uc002nrl.3_Silent_p.K244K|ZNF681_uc002nrj.3_Silent_p.K244K	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	313	C2H2-type 6; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TGCCACATTCCTTATATTCAT	0.383													9	37					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31769628	31769628	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:31769628G>A	uc002nsy.3	-	2	1136	c.1071C>T	c.(1069-1071)AAC>AAT	p.N357N		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	357					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TGATGTAAGGGTTGGAGTTCT	0.562													52	164					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770204	31770204	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:31770204G>A	uc002nsy.3	-	2	560	c.495C>T	c.(493-495)TTC>TTT	p.F165F		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	165					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GGTGCCAGTCGAAGCTCCCgc	0.483													8	14					0	0	1	0	0
ZFP14	57677	broad.mit.edu	37	19	36831279	36831280	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:36831279_36831280CT>TA	uc002odx.1	-	4	1541_1542	c.1448_1449AG>TA	c.(1447-1449)AAG>ATA	p.K483I	ZFP14_uc010xtd.1_Missense_Mutation_p.K484I|ZFP14_uc010eex.1_Missense_Mutation_p.K483I	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	483	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					TACCACATTCCTTACATTCATA	0.381													15	34					0	0	1	0	0
ZNF461	92283	broad.mit.edu	37	19	37130221	37130221	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:37130221A>G	uc002oem.2	-	6	1254	c.1026T>C	c.(1024-1026)TTT>TTC	p.F342F	ZNF461_uc002oen.2_Silent_p.F311F|ZNF461_uc010xtj.1_Silent_p.F319F	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	342	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			CAGTAAGTTGAAAGCCACGAA	0.408													6	17					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38991298	38991298	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:38991298C>T	uc002oit.2	+	46	7506	c.7376C>T	c.(7375-7377)TCC>TTC	p.S2459F	RYR1_uc002oiu.2_Missense_Mutation_p.S2459F|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2459	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ATCCTCCGCTCCCTTGTGCCC	0.642													5	30					0	0	1	0	0
ITPKC	80271	broad.mit.edu	37	19	41245309	41245309	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:41245309C>T	uc002oot.2	+	7	1929	c.1896C>T	c.(1894-1896)GCC>GCT	p.A632A		NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	632						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CCGGCCTGGCCAAGGTCTGGA	0.657													12	29					0	0	1	0	0
CYP2A6	1548	broad.mit.edu	37	19	41355778	41355778	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:41355778C>T	uc002opl.3	-	2	309	c.288G>A	c.(286-288)GAG>GAA	p.E96E	CYP2A6_uc010ehe.1_Intron|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	96					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CGCTGAACTCCTCAGCCTGGT	0.642													14	53					0	0	1	0	0
DMRTC2	63946	broad.mit.edu	37	19	42353223	42353223	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:42353223G>A	uc002ors.2	+	6	737	c.654G>A	c.(652-654)CAG>CAA	p.Q218Q	DMRTC2_uc002orr.1_Silent_p.Q95Q|DMRTC2_uc010xwe.1_Silent_p.Q218Q	NM_001040283	NP_001035373	Q8IXT2	DMRTD_HUMAN	DMRT-like family C2	218	Pro-rich.				cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						CCTCCCTCCAGCTGCCCACTC	0.557													41	106					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42482888	42482889	+	Missense_Mutation	DNP	GG	AA	AA	rs146606627		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:42482888_42482889GG>AA	uc002osg.2	-	12	1653_1654	c.1499_1500CC>TT	c.(1498-1500)GCC>GTT	p.A500V	ATP1A3_uc010xwf.1_Missense_Mutation_p.A511V|ATP1A3_uc010xwg.1_Missense_Mutation_p.A470V|ATP1A3_uc010xwh.1_Missense_Mutation_p.A513V|ATP1A3_uc002osh.2_Missense_Mutation_p.A500V	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	500	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TGCGCTCGGGGGCACCCTTCAT	0.619													29	75					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43233347	43233347	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:43233347G>A	uc002oue.2	-	5	1303	c.1171C>T	c.(1171-1173)CTC>TTC	p.L391F	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Missense_Mutation_p.L391F|PSG3_uc010eil.2_Missense_Mutation_p.L413F	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	391	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CAAGCATAGAGCCCGCTATGC	0.458													56	142					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43236939	43236939	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:43236939G>A	uc002oue.2	-	3	838	c.706C>T	c.(706-708)CTC>TTC	p.L236F	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.L258F	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	236					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TACTCACGGAGGAGATTCAGG	0.537													68	197					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43433748	43433748	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:43433748C>T	uc002ovl.3	-	4	657	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_Silent_p.Q4Q|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.Q63Q	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	185	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TAGGGAGGCTCTGACCATTCA	0.502													69	220					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43579531	43579531	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:43579531A>C	uc002ovr.2	-	3	777	c.684T>G	c.(682-684)AGT>AGG	p.S228R	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.S228R|PSG2_uc010eiq.1_Missense_Mutation_p.S228R|PSG2_uc002ovs.3_Missense_Mutation_p.S228R|PSG2_uc002ovt.3_Missense_Mutation_p.S228R	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	228	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TGACTGGGTCACTGCGGCTGG	0.527													73	231					0	0	1	0	0
CADM4	199731	broad.mit.edu	37	19	44131051	44131051	+	Silent	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44131051C>A	uc002oxc.1	-	4	433	c.384G>T	c.(382-384)GTG>GTT	p.V128V		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	128	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GGACCTCCACCACAGGATTCT	0.667													8	47					0.000442599	0.000444727	1	1	0
C19orf61	56006	broad.mit.edu	37	19	44251629	44251629	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44251629C>T	uc002oxj.2	-	5	896	c.553G>A	c.(553-555)GAT>AAT	p.D185N	C19orf61_uc002oxk.2_Missense_Mutation_p.D185N|C19orf61_uc010eiy.1_Missense_Mutation_p.D185N	NM_019108	NP_061981	Q9H0W8	SMG9_HUMAN	SMG9 protein	185					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	intracellular	protein binding				0		Prostate(69;0.0352)				ATCTGGTCATCCACCAACTTG	0.567													12	35					0	0	1	0	0
KCNN4	3783	broad.mit.edu	37	19	44278616	44278616	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44278616G>A	uc002oxl.2	-	3	807	c.411C>T	c.(409-411)TCC>TCT	p.S137S	KCNN4_uc010eiz.2_Silent_p.S50S|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	137					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	AGGGCTGCGGGGAGGTCAGCG	0.731											OREG0025535	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6					0	0	1	0	0
KCNN4	3783	broad.mit.edu	37	19	44278618	44278618	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44278618A>T	uc002oxl.2	-	3	805	c.409T>A	c.(409-411)TCC>ACC	p.S137T	KCNN4_uc010eiz.2_Missense_Mutation_p.S50T|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	137					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	GGCTGCGGGGAGGTCAGCGGC	0.736											OREG0025535	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6					0	0	1	0	0
ZNF404	342908	broad.mit.edu	37	19	44377833	44377833	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44377833C>T	uc002oxs.3	-	2	533	c.524G>A	c.(523-525)CGA>CAA	p.R175Q		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	178	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				GTGGATTTTTCGATGTCTAAT	0.368													24	48					0	0	1	0	0
ZNF234	10780	broad.mit.edu	37	19	44662009	44662009	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44662009C>T	uc002oym.2	+	6	2147	c.1840C>T	c.(1840-1842)CAT>TAT	p.H614Y	ZNF234_uc002oyl.3_Missense_Mutation_p.H614Y	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	614	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TCTCCAACTTCATCAGAGTGT	0.463													28	83					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891001	44891001	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44891001G>A	uc002ozd.3	-	4	1493	c.1406C>T	c.(1405-1407)TCT>TTT	p.S469F	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.S476F	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	469	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GTGAAGAACAGAGCTATACGC	0.413													14	60					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44892134	44892134	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:44892134G>A	uc002ozd.3	-	4	360	c.273C>T	c.(271-273)ATC>ATT	p.I91I	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.I98I	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GAAGGTTCACGATATAATCCT	0.418													20	51					0	0	1	0	0
PVRL2	5819	broad.mit.edu	37	19	45368806	45368806	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:45368806G>A	uc002ozw.1	+	2	757	c.367G>A	c.(367-369)GCC>ACC	p.A123T	PVRL2_uc002ozv.2_Missense_Mutation_p.A123T	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	123	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		GCTCCAGGACGCCACGCTGGC	0.662													29	79					0	0	1	0	0
MYPOP	339344	broad.mit.edu	37	19	46393886	46393886	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:46393886G>A	uc002pdt.2	-	3	1282	c.1195C>T	c.(1195-1197)CCG>TCG	p.P399S		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	399						nucleus	DNA binding				0						AGATTTCACGGAGATTTCCAT	0.642													16	33					0	0	1	0	0
NOVA2	4858	broad.mit.edu	37	19	46443924	46443924	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:46443924G>A	uc002pdv.2	-	4	724	c.676C>T	c.(676-678)CCC>TCC	p.P226S		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	226						nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		GAGCCGGTGGGGTTGGAGTTG	0.726													8	17					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47870283	47870283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:47870283G>A	uc010xyn.1	+	7	1980	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	DHX34_uc010elc.1_Missense_Mutation_p.E462K	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	547						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CCCCTTCATCGAGCCCCCACC	0.612													13	33					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47880452	47880452	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:47880452C>T	uc010xyn.1	+	13	3036	c.2695C>T	c.(2695-2697)CCT>TCT	p.P899S	DHX34_uc010xyo.1_Missense_Mutation_p.P28S	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	899						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CGTCCGCATCCCTGCCCTCCA	0.642													5	13					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969356	47969356	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:47969356G>A	uc002pgx.2	-	2	583	c.305C>T	c.(304-306)TCA>TTA	p.S102L	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.S102L	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	102	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CTTCTCTTTTGACGTGATGAC	0.577													14	28					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48806926	48806926	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:48806926C>T	uc002pir.2	-	8	1541	c.858G>A	c.(856-858)TTG>TTA	p.L286L	CCDC114_uc002piq.2_Silent_p.L95L|CCDC114_uc002pio.2_Silent_p.L323L|CCDC114_uc002pis.1_5'Flank|CCDC114_uc002pit.1_Silent_p.L323L|CCDC114_uc002piu.1_Silent_p.L323L	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	286										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		ACTTCTGCACCAACAGGTCAG	0.642													13	51					0	0	1	0	0
PPFIA3	8541	broad.mit.edu	37	19	49640045	49640045	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:49640045C>T	uc002pmr.2	+	15	2062	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010emt.2_Missense_Mutation_p.S501F|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.S445F	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	577						cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		CTGGACGGCTCCGATGAGGAG	0.647													3	9					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50157982	50157982	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:50157982C>T	uc002poq.2	+	9	3597	c.3473C>T	c.(3472-3474)CCC>CTC	p.P1158L		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1158					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		TTGGGTCTGCCCCCTGGCCCC	0.672													28	54					0	0	1	0	0
SPIB	6689	broad.mit.edu	37	19	50926219	50926219	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:50926219C>T	uc002psd.2	+	4	289	c.264C>T	c.(262-264)AAC>AAT	p.N88N	SPIB_uc002pse.2_Silent_p.N88N|SPIB_uc010ycc.1_Intron	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	88					regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CTGCAGGGAACCTCGAACTGG	0.652													9	44					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51329169	51329169	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:51329169G>A	uc002ptl.2	-	5	685	c.654C>T	c.(652-654)ATC>ATT	p.I218I	KLK1_uc002ptk.1_5'Flank|KLK1_uc010ycg.1_5'Flank|KLK15_uc002ptm.2_Silent_p.I133I|KLK15_uc002ptn.2_3'UTR|KLK15_uc002pto.2_Silent_p.I217I|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_3'UTR|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	218	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity	p.I218N(1)		lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		TGCCCTGCAGGATGCCCCCAC	0.557													8	30					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51994916	51994916	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:51994916G>A	uc002pwx.1	-	8	1823	c.1767C>T	c.(1765-1767)TCC>TCT	p.S589S	SIGLEC12_uc002pww.1_Silent_p.S471S|SIGLEC12_uc010eoy.1_Silent_p.S316S	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	589	SLAM-like motif.|Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGTTGATCTCGGAGTACTCAT	0.542													27	61					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004848	52004848	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:52004848G>A	uc002pwx.1	-	1	196	c.140C>T	c.(139-141)TCC>TTC	p.S47F	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	47	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TTGGGGGTAGGAGAAGGAGCA	0.567													12	45					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327809	52327809	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:52327809G>A	uc002pxt.1	+	2	992	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	270	Extracellular (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CTGGCTCAAAGAGATGTTGTT	0.438													27	42					0	0	1	0	0
ZNF616	90317	broad.mit.edu	37	19	52619357	52619357	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:52619357T>C	uc002pym.2	-	4	1343	c.1060A>G	c.(1060-1062)AAA>GAA	p.K354E	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	354	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		ACATCACATTTATATGGTTTC	0.408													37	96					0	0	1	0	0
ZNF616	90317	broad.mit.edu	37	19	52619503	52619503	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:52619503G>A	uc002pym.2	-	4	1197	c.914C>T	c.(913-915)TCC>TTC	p.S305F	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	305	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		CTGACTAAAGGATTTCCCACA	0.408													15	42					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53013890	53013890	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:53013890C>T	uc002pzp.3	+	6	500	c.256C>T	c.(256-258)CAC>TAC	p.H86Y		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGAAGTGATCCACACAGGGAT	0.368													25	79					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53014938	53014938	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:53014938C>T	uc002pzp.3	+	6	1548	c.1304C>T	c.(1303-1305)GCT>GTT	p.A435V		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	210	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		TGTGGTAAGGCTTTTATTCAT	0.378													19	49					0	0	1	0	0
ZNF468	90333	broad.mit.edu	37	19	53344963	53344963	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:53344963T>G	uc002qaf.2	-	4	735	c.584A>C	c.(583-585)AAT>ACT	p.N195T	ZNF468_uc002qae.2_Missense_Mutation_p.N142T	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		ATGGAGGGAATTATTTCCATA	0.343													14	109					0	0	1	0	0
MIR520A	574467	broad.mit.edu	37	19	54194197	54194197	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:54194197C>T	hsa-mir-520a|MI0003149	+			c.63C>T																				0						AAAGTGCTTCCCTTTGGACTG	0.453													21	72					0	0	1	0	0
MIR519B	574469	broad.mit.edu	37	19	54198488	54198488	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:54198488G>A	hsa-mir-519b|MI0003151	+			c.22G>A			MIR525_hsa-mir-525|MI0003152_5'Flank																	0						CCTCTAGAGGGAAGCGCTTTC	0.403													29	48					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54759954	54759954	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:54759954G>A	uc002qex.2	-	4	718	c.607C>T	c.(607-609)CCT>TCT	p.P203S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P194S|LILRB5_uc002qey.2_Missense_Mutation_p.P203S|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	203	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CACACCTGAGGGTTTTTCCTG	0.532													19	66					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54844928	54844928	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:54844928C>T	uc002qfj.2	-	8	1472	c.1415G>A	c.(1414-1416)AGA>AAA	p.R472K	LILRA4_uc002qfi.2_Missense_Mutation_p.R406K	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	472	Cytoplasmic (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TGGGGGGCTTCTCTGGCTGTG	0.547													10	48					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54849767	54849767	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:54849767G>A	uc002qfj.2	-	3	312	c.255C>T	c.(253-255)ATC>ATT	p.I85I	LILRA4_uc002qfi.2_Silent_p.I19I	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	85	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TCATGGATGGGATGGAGAGTT	0.537													25	68					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106316	55106316	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:55106316C>T	uc002qgh.1	+	4	439	c.257C>T	c.(256-258)CCA>CTA	p.P86L	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.P86L	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	86	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TTCCCCATCCCATCCATCACC	0.562													15	64					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349247	55349247	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:55349247G>A	uc002qhm.1	+	3	333	c.287G>A	c.(286-288)GGA>GAA	p.G96E	KIR2DS4_uc010yfj.1_Missense_Mutation_p.G89E|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.G96E|KIR2DS4_uc002qhn.1_Missense_Mutation_p.G43E	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	96	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GTCCTTGCAGGAACCTACAGA	0.517													73	177					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450587	55450587	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:55450587A>G	uc002qih.3	-	4	1676	c.1600T>C	c.(1600-1602)TTG>CTG	p.L534L	NLRP7_uc002qig.3_Silent_p.L534L|NLRP7_uc002qii.3_Silent_p.L534L|NLRP7_uc010esk.2_Silent_p.L534L|NLRP7_uc010esl.2_Silent_p.L562L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	534							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTGGCCTCCAACTCCTTGGCT	0.498													9	40					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55451818	55451818	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:55451818C>T	uc002qih.3	-	4	445	c.369G>A	c.(367-369)TGG>TGA	p.W123*	NLRP7_uc002qig.3_Nonsense_Mutation_p.W123*|NLRP7_uc002qii.3_Nonsense_Mutation_p.W123*|NLRP7_uc010esk.2_Nonsense_Mutation_p.W123*|NLRP7_uc010esl.2_Nonsense_Mutation_p.W151*	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	123							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTGAATTTCTCCATCCTTCCT	0.408													89	223					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56300662	56300662	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:56300662C>T	uc010ygf.1	-	10	3328	c.2617G>A	c.(2617-2619)GAA>AAA	p.E873K	NLRP11_uc002qlz.2_Missense_Mutation_p.E720K|NLRP11_uc002qmb.2_Missense_Mutation_p.E774K|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	873	LRR 5.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CCTGCATCTTCTATTTTGTTG	0.443													33	83					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56465911	56465911	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:56465911C>T	uc002qmh.2	+	3	558	c.487C>T	c.(487-489)CCC>TCC	p.P163S	NLRP8_uc010etg.2_Missense_Mutation_p.P163S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	163						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAAGTTTTTCCCCATATGGGA	0.438													21	50					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466945	56466945	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:56466945C>T	uc002qmh.2	+	3	1592	c.1521C>T	c.(1519-1521)CTC>CTT	p.L507L	NLRP8_uc010etg.2_Silent_p.L507L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	507	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCTTTACCCTCGTGACTTTTC	0.463													35	112					0	0	1	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56735033	56735033	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:56735033G>A	uc002qmq.2	-	3	721	c.555C>T	c.(553-555)ATC>ATT	p.I185I	ZSCAN5A_uc010ygi.1_Silent_p.I68I|ZSCAN5A_uc002qmr.2_Silent_p.I185I|ZSCAN5A_uc002qms.1_Silent_p.I185I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	185					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CCCTGGGCAGGATCTGCAGCT	0.617													13	30					0	0	1	0	0
ZNF71	58491	broad.mit.edu	37	19	57132728	57132728	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:57132728C>T	uc002qnm.3	+	3	311	c.73C>T	c.(73-75)CCC>TCC	p.P25S		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	25						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		CACGGGGGGACCCACGAGGAA	0.582													13	39					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57333110	57333110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:57333110C>T	uc002qnu.2	-	4	929	c.578G>A	c.(577-579)CGG>CAG	p.R193Q	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.R68Q|ZIM2_uc002qnq.2_Missense_Mutation_p.R68Q|ZIM2_uc010etp.2_Missense_Mutation_p.R68Q|ZIM2_uc010ygs.1_Missense_Mutation_p.R68Q|PEG3_uc002qnt.2_Missense_Mutation_p.R194Q|PEG3_uc002qnv.2_Missense_Mutation_p.R193Q|PEG3_uc002qnw.2_Missense_Mutation_p.R68Q|PEG3_uc002qnx.2_Missense_Mutation_p.R67Q|PEG3_uc010etr.2_Missense_Mutation_p.R193Q	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	193					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R193W(1)		ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGAAAGATCCCGCGGAGGCAT	0.542													19	87					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646636	57646636	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:57646636G>A	uc002qnz.1	-	5	1455	c.1069C>T	c.(1069-1071)CAC>TAC	p.H357Y		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	357	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTCCCAGTGTGAATTTTCTCA	0.393													23	96					0	0	1	0	0
ZNF419	79744	broad.mit.edu	37	19	58003535	58003536	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:58003535_58003536CC>TT	uc002qov.2	+	4	494_495	c.254_255CC>TT	c.(253-255)CCC>CTT	p.P85L	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Missense_Mutation_p.P86L|ZNF419_uc010etz.1_Missense_Mutation_p.P73L|ZNF419_uc010eua.1_Missense_Mutation_p.P72L|ZNF419_uc002qow.2_Intron|ZNF419_uc010eub.1_Intron|ZNF419_uc010euc.1_Intron	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	85	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		TGGGAGGAGCCCTTCATGCCTG	0.51													14	50					0	0	1	0	0
ZNF8	7554	broad.mit.edu	37	19	58806109	58806109	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:58806109C>T	uc002qry.1	+	4	1065	c.935C>T	c.(934-936)CCC>CTC	p.P312L	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	312					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		GGAGACAAGCCCTACAAGTGT	0.532													13	39					0	0	1	0	0
ZNF132	7691	broad.mit.edu	37	19	58946388	58946388	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr19:58946388G>A	uc002qst.3	-	3	824	c.423C>T	c.(421-423)CCC>CCT	p.P141P		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	141						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		CACATGTGTAGGGTTTCTCCT	0.498													32	71					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1652992	1652992	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:1652992C>T	uc002qxa.2	-	17	2624	c.2560G>A	c.(2560-2562)GAC>AAC	p.D854N		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	854					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CAGGGGGGGTCGTTGCTGCAC	0.672													4	19					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1805505	1805505	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:1805505G>T	uc002qxe.2	-	23	4066	c.3239C>A	c.(3238-3240)TCC>TAC	p.S1080Y	MYT1L_uc002qxd.2_Missense_Mutation_p.S1078Y|MYT1L_uc010ewk.2_Missense_Mutation_p.S76Y	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	1080	Potential.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TTCCATCTGGGAATTGGATTC	0.343													31	101					3.62531e-18	3.68606e-18	1	1	0
ALLC	55821	broad.mit.edu	37	2	3726094	3726094	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:3726094G>A	uc010ewt.2	+	4	282	c.121G>A	c.(121-123)GAG>AAG	p.E41K		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	60							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		TGAATATACGGAGTTTGGGAA	0.468										HNSCC(21;0.051)			21	35					0	0	1	0	0
YWHAQ	10971	broad.mit.edu	37	2	9727594	9727594	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:9727594G>A	uc002qzw.2	-	4	791	c.627C>T	c.(625-627)GAC>GAT	p.D209D	YWHAQ_uc002qzx.2_Silent_p.D209D	NM_006826	NP_006817	P27348	1433T_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	209					negative regulation of transcription, DNA-dependent	centrosome|nucleus	protein N-terminus binding			breast(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.241)		CTTTGTATGAGTCTTCATTCA	0.338													12	49					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15330430	15330430	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:15330430A>G	uc002rcc.1	-	49	6556	c.6530T>C	c.(6529-6531)GTT>GCT	p.V2177A	NBAS_uc002rcb.1_Missense_Mutation_p.V17A|NBAS_uc010exl.1_Missense_Mutation_p.V1249A|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2177										ovary(2)|liver(1)|skin(1)	4						CAAAAGTAAAACCAAGTGCTG	0.388													18	50					0	0	1	0	0
WDR35	57539	broad.mit.edu	37	2	20146266	20146266	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:20146266G>A	uc002rdi.2	-	16	1731	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	WDR35_uc002rdj.2_Silent_p.S530S|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_Silent_p.S106S|WDR35_uc002rdk.3_Silent_p.S106S	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	541										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACAATTAAGGGAATATTTTT	0.378													21	52					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21233206	21233206	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:21233206C>T	uc002red.2	-	26	6662	c.6534G>A	c.(6532-6534)ATG>ATA	p.M2178I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2178	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAAATTGTATCATATATGTCT	0.234													76	272					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234154	21234154	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:21234154C>T	uc002red.2	-	26	5714	c.5586G>A	c.(5584-5586)GTG>GTA	p.V1862V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1862					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGCTAAACTCCACACCCTGAA	0.443													139	311					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234300	21234300	+	Silent	SNP	G	A	A	rs147543230		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:21234300G>A	uc002red.2	-	26	5568	c.5440C>T	c.(5440-5442)CTA>TTA	p.L1814L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1814					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCTAGCCGTAGTTTCCCATTG	0.413													163	454					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21235039	21235039	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:21235039C>T	uc002red.2	-	26	4829	c.4701G>A	c.(4699-4701)GAG>GAA	p.E1567E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1567					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTAAAGTCAGCTCGTAGTTCT	0.423													126	358					0	0	1	0	0
AGBL5	60509	broad.mit.edu	37	2	27279648	27279649	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:27279648_27279649GG>AA	uc002rie.2	+	8	1740_1741	c.1523_1524GG>AA	c.(1522-1524)GGG>GAA	p.G508E	AGBL5_uc002rid.2_Missense_Mutation_p.G508E|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	508					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAAGCCTCAGGGATAATCCACA	0.396													32	87					0	0	1	0	0
KHK	3795	broad.mit.edu	37	2	27320460	27320460	+	Silent	SNP	C	T	T	rs148222785	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:27320460C>T	uc002ril.2	+	5	1024	c.507C>T	c.(505-507)TCC>TCT	p.S169S	KHK_uc002rim.2_Silent_p.S169S|KHK_uc002rin.2_Silent_p.S170S|KHK_uc002rio.2_Silent_p.S85S	NM_000221	NP_000212	P50053	KHK_HUMAN	ketohexokinase isoform a	169					fructose catabolic process	cytosol	ATP binding|ketohexokinase activity|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCGGGTGTCCGTGGAGGTGG	0.592													15	62					0	0	1	0	0
TRIM54	57159	broad.mit.edu	37	2	27505722	27505722	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:27505722C>T	uc002rjo.2	+	1	123	c.123C>T	c.(121-123)CCC>CCT	p.P41P	TRIM54_uc002rjn.2_Silent_p.P41P	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	41	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGATCCTGCCCTGCCAACACA	0.602													68	134					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29222183	29222183	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:29222183G>A	uc010ezl.2	+	4	627	c.276G>A	c.(274-276)AGG>AGA	p.R92R	FAM179A_uc010ymm.1_Silent_p.R92R	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	92							binding			ovary(3)|skin(1)	4						GTCACCCCAGGAACCTCAGGG	0.632													7	21					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29259573	29259573	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:29259573G>A	uc010ezl.2	+	18	2936	c.2585G>A	c.(2584-2586)GGG>GAG	p.G862E	FAM179A_uc010ymm.1_Missense_Mutation_p.G807E|FAM179A_uc002rmr.3_Missense_Mutation_p.G389E|FAM179A_uc002rms.1_Missense_Mutation_p.G160E	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	862							binding			ovary(3)|skin(1)	4						AAGAACTCAGGGATTTACGCT	0.572													12	24					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29294425	29294425	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:29294425G>A	uc002rmt.1	-	1	2703	c.2703C>T	c.(2701-2703)ACC>ACT	p.T901T		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	901					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TGTGAGGCTTGGTCAGGCTGG	0.677													10	22					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29451835	29451835	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:29451835C>T	uc002rmy.2	-	16	3637	c.2730G>A	c.(2728-2730)ATG>ATA	p.M910I		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	910	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CCCACTTCTTCATGGCCTGGG	0.587			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				6	28					0	0	1	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754486	31754486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:31754486C>T	uc002rnw.1	-	5	660	c.589G>A	c.(589-591)GAG>AAG	p.E197K		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	197			E -> D (in PPSH).		androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	TCAATGATCTCACCGAGGAAA	0.463													3	22					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32740546	32740546	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:32740546T>C	uc010ezu.2	+	55	11192	c.11058T>C	c.(11056-11058)ATT>ATC	p.I3686I		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3686					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding	p.A3656fs*3(1)		ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTGCTCCTATTCTTAGGTTTT	0.418													10	22					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	36994276	36994276	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:36994276G>A	uc002rpl.2	+	7	748	c.527G>A	c.(526-528)GGG>GAG	p.G176E	VIT_uc010ynf.1_Intron|VIT_uc002rpm.2_Missense_Mutation_p.G169E|VIT_uc010ezv.2_Missense_Mutation_p.G169E|VIT_uc010ezw.2_Missense_Mutation_p.G169E	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	176						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CCTATTCCAGGGACAACTGCA	0.507													12	24					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37035973	37035973	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:37035973G>A	uc002rpl.2	+	15	1969	c.1748G>A	c.(1747-1749)TGG>TAG	p.W583*	VIT_uc002rpm.2_Nonsense_Mutation_p.W561*|VIT_uc010ezv.2_Nonsense_Mutation_p.W539*|VIT_uc010ezw.2_Nonsense_Mutation_p.W540*	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	568	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GTGGGCTACTGGAGTGGTGGC	0.572													16	43					0	0	1	0	0
STRN	6801	broad.mit.edu	37	2	37152304	37152304	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:37152304C>T	uc002rpn.2	-	2	291	c.282G>A	c.(280-282)TTG>TTA	p.L94L	STRN_uc010ezx.2_Silent_p.L94L	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	94	Potential.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				GATCCTTCTTCAAATTTTCTT	0.353													4	90					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48897021	48897021	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:48897021A>G	uc010yol.1	+	6	3157	c.3110A>G	c.(3109-3111)GAT>GGT	p.D1037G	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.D1084G|GTF2A1L_uc002rws.1_Missense_Mutation_p.D380G|GTF2A1L_uc010yom.1_Missense_Mutation_p.D346G|GTF2A1L_uc002rwt.2_Missense_Mutation_p.D380G	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1037					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GACGGGGGAGATCTGAAGGTA	0.393													9	35					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50779739	50779739	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:50779739C>T	uc010fbq.2	-	9	3342	c.1865G>A	c.(1864-1866)AGA>AAA	p.R622K	NRXN1_uc002rxb.3_Missense_Mutation_p.R254K|NRXN1_uc002rxe.3_Missense_Mutation_p.R582K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	184	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCGTCCGTCTCTCTGGAAGTC	0.443													27	78					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688835	60688835	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:60688835G>A	uc002sae.1	-	4	1440	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	BCL11A_uc002sab.2_Silent_p.P404P|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.P73P|BCL11A_uc010ypj.1_Silent_p.P370P|BCL11A_uc002sad.1_Silent_p.P252P|BCL11A_uc002saf.1_Silent_p.P370P	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	404					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGCACTTGTAGGGCTTCTCGC	0.597			T	IGH@	B-CLL								128	309					0	0	1	0	0
PAPOLG	64895	broad.mit.edu	37	2	61006804	61006804	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:61006804C>T	uc002sai.2	+	9	958	c.727C>T	c.(727-729)CTT>TTT	p.L243F	PAPOLG_uc002saj.2_5'UTR|PAPOLG_uc002sak.2_5'UTR|PAPOLG_uc010fch.2_5'Flank	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	243					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			GCTAGGATTCCTTGGTGGTGT	0.348													18	50					0	0	1	0	0
OTX1	5013	broad.mit.edu	37	2	63283240	63283240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:63283240C>T	uc002scd.2	+	5	1102	c.854C>T	c.(853-855)CCG>CTG	p.P285L	OTX1_uc010ypt.1_Missense_Mutation_p.P219L	NM_014562	NP_055377	P32242	OTX1_HUMAN	orthodenticle homeobox 1	285	His-rich.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(2)	2	Lung NSC(7;0.121)|all_lung(7;0.211)					GCGCACCACCCGTTGAGCCAG	0.532													22	50					0	0	1	0	0
MEIS1	4211	broad.mit.edu	37	2	66667002	66667002	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:66667002G>A	uc002sdu.2	+	3	724	c.267G>A	c.(265-267)CTG>CTA	p.L89L	MEIS1_uc002sdt.2_Silent_p.L89L|MEIS1_uc002sdv.2_Silent_p.L87L|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Silent_p.L24L|MEIS1_uc002sdw.1_5'Flank	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	89							sequence-specific DNA binding transcription factor activity				0						TCTTAGCACTGATTTTTGAGA	0.493													10	26					0	0	1	0	0
BMP10	27302	broad.mit.edu	37	2	69098462	69098462	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:69098462G>A	uc002sez.1	-	1	188	c.29C>T	c.(28-30)GCT>GTT	p.A10V		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	10					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						GCAGAAAAGAGCGCACAGTGT	0.522													7	42					0	0	1	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71361903	71361903	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:71361903C>T	uc002sht.1	+	4	1426	c.1074C>T	c.(1072-1074)TCC>TCT	p.S358S	MPHOSPH10_uc010feb.1_Silent_p.S358S	NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	358	Potential.				RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						AAGTTAAATCCTCCTTTGAAA	0.294													22	66					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74327700	74327700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:74327700C>T	uc002skb.3	+	9	3380	c.3380C>T	c.(3379-3381)TCC>TTC	p.S1127F		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1127							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TCCTACCACTCCTACTATGCA	0.577													6	10					0	0	1	0	0
DQX1	165545	broad.mit.edu	37	2	74749796	74749796	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:74749796G>A	uc010yrw.1	-	8	1571	c.1406C>T	c.(1405-1407)CCT>CTT	p.P469L	DQX1_uc002smc.2_Missense_Mutation_p.P30L	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	469						nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						AGGGGCCAGAGGGAATTCTGA	0.547													51	135					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746756	77746756	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:77746756T>C	uc002snr.2	-	3	654	c.239A>G	c.(238-240)CAG>CGG	p.Q80R	LRRTM4_uc002snq.2_Missense_Mutation_p.Q80R|LRRTM4_uc002sns.2_Missense_Mutation_p.Q80R|LRRTM4_uc002snt.2_Missense_Mutation_p.Q81R	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	80	LRR 1.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		GCCGGCAAACTGATTGGATTT	0.418													29	57					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85097784	85097784	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:85097784G>A	uc010ysl.1	-	2	323	c.234C>T	c.(232-234)TTC>TTT	p.F78F	C2orf89_uc002sou.3_Silent_p.F78F|C2orf89_uc010fgc.1_Silent_p.F78F	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	78	Extracellular (Potential).					integral to membrane				ovary(1)	1						TGCTCTGCAGGAAAGCCTCCT	0.527													9	5					0	0	1	0	0
GNLY	10578	broad.mit.edu	37	2	85922508	85922508	+	Missense_Mutation	SNP	G	A	A	rs79199677		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:85922508G>A	uc002sql.3	+	2	246	c.118G>A	c.(118-120)GAG>AAG	p.E40K	GNLY_uc010fgp.2_Missense_Mutation_p.E25K|GNLY_uc010ysx.1_Missense_Mutation_p.E67K	NM_006433	NP_006424	P22749	GNLY_HUMAN	granulysin isoform NKG5	40					cellular defense response|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0						GCGTGATGAGGAGAAATCCTG	0.622													5	23					0	0	1	0	0
FABP1	2168	broad.mit.edu	37	2	88425751	88425751	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:88425751C>T	uc002sst.1	-	2	226	c.184G>A	c.(184-186)GAA>AAA	p.E62K	FABP1_uc002ssu.2_Missense_Mutation_p.E62K	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	62					organ morphogenesis						0						ACCGTGAATTCGTTTTGGATC	0.517													66	171					0	0	1	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88913278	88913279	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:88913278_88913279GG>AA	uc002stc.3	-	2	603_604	c.401_402CC>TT	c.(400-402)TCC>TTT	p.S134F		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	134	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CCAAGGAACCGGATCCCACATC	0.361													63	165					0	0	1	0	0
LYG2	254773	broad.mit.edu	37	2	99861889	99861889	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:99861889C>T	uc002szw.1	-	4	330	c.217G>A	c.(217-219)GAT>AAT	p.D73N	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Missense_Mutation_p.D73N|LYG2_uc002szx.1_Missense_Mutation_p.D73N	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	73					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						GCCCTCAAATCCATCTCAGCA	0.373													37	32					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236447	103236447	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:103236447C>T	uc002tca.2	+	1	282	c.140C>T	c.(139-141)TCC>TTC	p.S47F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	47	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GGCACCAGTTCCAGCCCGCCT	0.493													8	18					0	0	1	0	0
IL1B	3553	broad.mit.edu	37	2	113590346	113590346	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:113590346C>T	uc002tii.1	-	5	446	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	IL1B_uc002tih.1_Missense_Mutation_p.R89Q	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	120		Involved in receptor binding.			activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	GTTCAGTGATCGTACAGGTGC	0.473													45	43					0	0	1	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257041	114257041	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:114257041C>T	uc002tjw.3	+	1	381	c.208C>T	c.(208-210)CCC>TCC	p.P70S		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	70					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GGTTGCGCTTCCCCGAGAGCA	0.602													60	24					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	124979306	124979306	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:124979306C>T	uc002tno.2	+	2	471	c.107C>T	c.(106-108)TCC>TTC	p.S36F	CNTNAP5_uc010flu.2_Missense_Mutation_p.S36F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	36	F5/8 type C.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CCACTAGCATCCCTGCTCTCT	0.458													9	5					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130877630	130877630	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:130877630G>A	uc010fmh.2	-	3	859	c.459C>T	c.(457-459)CCC>CCT	p.P153P		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	153						cell cortex	ATP binding			skin(3)|ovary(2)	5						GATCCTTTCTGGGGACTTTAC	0.582													4	82					0	0	1	0	0
TUBA3E	112714	broad.mit.edu	37	2	130953722	130953722	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:130953722C>T	uc002tqv.2	-	2	327	c.226G>A	c.(226-228)GAT>AAT	p.D76N		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	76					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					AGGCACCTACCGACCACAGTG	0.592													19	6					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131521388	131521388	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:131521388G>A	uc002trw.2	+	2	1933	c.1743G>A	c.(1741-1743)GAG>GAA	p.E581E	FAM123C_uc010fmv.2_Silent_p.E581E|FAM123C_uc010fms.1_Silent_p.E581E|FAM123C_uc010fmt.1_Silent_p.E581E|FAM123C_uc010fmu.1_Silent_p.E581E	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	581										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TCGCCGGAGAGAGCAAGGCCC	0.652													11	43					0	0	1	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131704165	131704166	+	Missense_Mutation	DNP	GG	AA	AA	rs149091381		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:131704165_131704166GG>AA	uc002tsa.1	+	4	904_905	c.384_385GG>AA	c.(382-387)ACGGGA>ACAAGA	p.G129R	ARHGEF4_uc010fmw.1_Missense_Mutation_p.G775R|ARHGEF4_uc002tsb.1_Missense_Mutation_p.G129R|ARHGEF4_uc010fmx.1_Missense_Mutation_p.G129R|ARHGEF4_uc002trz.1_Missense_Mutation_p.G775R	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	129					apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GTGCTCCAACGGGACTGAACCA	0.53													51	36					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976434	131976434	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:131976434C>T	uc002tsn.2	+	1	511	c.459C>T	c.(457-459)CCC>CCT	p.P153P	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	153							ATP binding				0						GTAAAGTCCCCAGAAAGGATC	0.582													54	24					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132201369	132201369	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:132201369C>T	uc002tst.2	-	1	1099	c.633G>A	c.(631-633)AGG>AGA	p.R211R		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CCAGCAGCTCCCTCAGGGTCC	0.592													18	18					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542042	133542042	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:133542042G>A	uc002ttp.2	-	14	2716	c.2342C>T	c.(2341-2343)TCA>TTA	p.S781L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	781							protein binding				0						ACTCTGGCATGATATATTGTG	0.453													57	57					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542946	133542946	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:133542946C>T	uc002ttp.2	-	14	1812	c.1438G>A	c.(1438-1440)GAT>AAT	p.D480N	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	480							protein binding				0						GAAGGGTCATCGTCCGCATCA	0.517													61	40					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136562369	136562369	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:136562369C>T	uc002tuu.1	-	10	4443	c.4432G>A	c.(4432-4434)GAT>AAT	p.D1478N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1478	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCAGTGTATCGATGAGCCTC	0.587													18	26					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136567182	136567182	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:136567182G>A	uc002tuu.1	-	8	2746	c.2735C>T	c.(2734-2736)TCC>TTC	p.S912F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	912	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCGGAAGAGGACACGCCCCA	0.517													51	34					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	140992397	140992397	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:140992397G>A	uc002tvj.1	-	90	14589	c.13617C>T	c.(13615-13617)CCC>CCT	p.P4539P		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4539	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ttaggtagatgggcggcgctg	0.055										TSP Lung(27;0.18)			19	47					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141115615	141115615	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:141115615A>G	uc002tvj.1	-	74	12300	c.11328T>C	c.(11326-11328)CCT>CCC	p.P3776P		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3776	Extracellular (Potential).|LDL-receptor class A 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGAGATCCATAGGGATGCATT	0.408										TSP Lung(27;0.18)			25	65					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141215202	141215202	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:141215202G>A	uc002tvj.1	-	61	10616	c.9644C>T	c.(9643-9645)CCA>CTA	p.P3215L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3215	Extracellular (Potential).|LDL-receptor class B 31.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATCACCCCTGGAATATCTTG	0.418										TSP Lung(27;0.18)			22	63					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141267566	141267566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:141267566G>A	uc002tvj.1	-	52	9301	c.8329C>T	c.(8329-8331)CGA>TGA	p.R2777*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2777	Extracellular (Potential).|LDL-receptor class A 17.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCCAATGTCGGGGCACGCAG	0.517										TSP Lung(27;0.18)			55	53					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155098652	155098652	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:155098652C>T	uc002tyr.3	+	5	988	c.421C>T	c.(421-423)CGT>TGT	p.R141C	GALNT13_uc002tyt.3_Missense_Mutation_p.R141C|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	141	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TGTGATAAATCGTTCCCCACA	0.343													25	18					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155102446	155102446	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:155102446C>T	uc002tyr.3	+	7	1375	c.808C>T	c.(808-810)CCC>TCC	p.P270S	GALNT13_uc002tyt.3_Missense_Mutation_p.P270S|GALNT13_uc010foc.1_Missense_Mutation_p.P89S|GALNT13_uc010fod.2_Missense_Mutation_p.P23S	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	270	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GTATCCTGTTCCCCAAAGAGA	0.388													23	12					0	0	1	0	0
ACVR1	90	broad.mit.edu	37	2	158655957	158655957	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:158655957G>A	uc002tzm.3	-	4	388	c.49C>T	c.(49-51)CCC>TCC	p.P17S	ACVR1_uc002tzn.3_Missense_Mutation_p.P17S|ACVR1_uc010fog.2_Missense_Mutation_p.P17S	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	17					BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	CTAGGGGAGGGGAGAGCAATC	0.333													30	23					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160732139	160732139	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:160732139C>T	uc002ubc.3	-	12	1859	c.1790G>A	c.(1789-1791)TGC>TAC	p.C597Y	LY75_uc002ubb.3_Missense_Mutation_p.C597Y|LY75_uc010fos.2_Missense_Mutation_p.C597Y|LY75_uc010fot.1_Missense_Mutation_p.C597Y	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	597	Extracellular (Potential).|C-type lectin 3.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CATAGCCACGCAGCCGCCCGG	0.428													70	44					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163228391	163228391	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:163228391C>T	uc002uch.1	-	16	3751	c.3539G>A	c.(3538-3540)GGA>GAA	p.G1180E		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1180	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ACCCACGATTCCTACAGTGCT	0.413													26	18					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167160751	167160751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:167160751G>A	uc010fpl.2	-	6	1026	c.685C>T	c.(685-687)CCA>TCA	p.P229S	SCN9A_uc002udr.1_Missense_Mutation_p.P100S|SCN9A_uc002uds.1_Intron|SCN9A_uc002udt.1_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	229	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTCTTACCTGGGATTACAGAA	0.373													15	22					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100929	168100929	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:168100929C>T	uc002udx.2	+	8	3045	c.3027C>T	c.(3025-3027)ATC>ATT	p.I1009I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.I834I|XIRP2_uc010fpq.2_Silent_p.I787I|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	834					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGAAGAAATCGTAAGAGGTG	0.363													28	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179445168	179445168	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:179445168G>C	uc010zfg.1	-	266	59458	c.59234C>G	c.(59233-59235)ACT>AGT	p.T19745S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T13440S|TTN_uc010zfi.1_Missense_Mutation_p.T13373S|TTN_uc010zfj.1_Missense_Mutation_p.T13248S|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20672							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCAAAGTCAGTTGACTTTAT	0.388													14	67					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179481221	179481221	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:179481221C>T	uc010zfg.1	-	206	40817	c.40593G>A	c.(40591-40593)CGG>CGA	p.R13531R	TTN_uc010zfh.1_Silent_p.R7226R|TTN_uc010zfi.1_Silent_p.R7159R|TTN_uc010zfj.1_Silent_p.R7034R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14458							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCATGTTTTCCGGCTGACTT	0.428													71	69					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179549115	179549115	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:179549115G>A	uc010zfg.1	-	129	29156	c.28932C>T	c.(28930-28932)ACC>ACT	p.T9644T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.T6305T|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10571							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTTCCTGGGTAATTTGCA	0.388													22	26					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179552860	179552860	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:179552860T>C	uc010zfg.1	-	124	28781	c.28557A>G	c.(28555-28557)GAA>GAG	p.E9519E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E6180E|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10446							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACCTCTGCTTCTTCCTCCT	0.393													64	45					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179610943	179610943	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:179610943G>A	uc002unb.2	-	46	16408	c.16184C>T	c.(16183-16185)TCA>TTA	p.S5395L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACAGCATCTGAATTTTCTGG	0.338													26	36					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182339713	182339713	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:182339713A>T	uc002unu.2	+	3	1109	c.346A>T	c.(346-348)AAG>TAG	p.K116*	ITGA4_uc010zfl.1_Nonsense_Mutation_p.K116*	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	116	FG-GAP 2.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ACCTTGTGGAAAGACTTGTTT	0.413													24	20					0	0	1	0	0
FRZB	2487	broad.mit.edu	37	2	183707222	183707222	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:183707222C>T	uc002upa.1	-	3	794	c.576G>A	c.(574-576)CGG>CGA	p.R192R		NM_001463	NP_001454	Q92765	SFRP3_HUMAN	frizzled-related protein precursor	192	NTR.				brain development|cochlea morphogenesis|gonad development|mammary gland involution|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of hepatocyte differentiation|positive regulation of apoptosis|positive regulation of fat cell differentiation|skeletal system development|vasculature development|Wnt receptor signaling pathway	cytoplasm|extracellular space|membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.109)|Epithelial(96;0.231)			TGTAATTGTTCCGGAAATAGG	0.353													14	55					0	0	1	0	0
PMS1	5378	broad.mit.edu	37	2	190719194	190719194	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:190719194C>T	uc002urh.3	+	9	1725	c.1196C>T	c.(1195-1197)TCT>TTT	p.S399F	PMS1_uc010zga.1_Missense_Mutation_p.S360F|PMS1_uc010zgb.1_Missense_Mutation_p.S338F|PMS1_uc002urk.3_Missense_Mutation_p.S360F|PMS1_uc002uri.3_Missense_Mutation_p.S399F|PMS1_uc010zgc.1_Missense_Mutation_p.S223F|PMS1_uc010zgd.1_Missense_Mutation_p.S223F|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.S360F|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Missense_Mutation_p.S184F|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Missense_Mutation_p.S67F	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	399					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			AATGATGAATCTGGAAAAAAC	0.299			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR					42	31					0	0	1	0	0
MSTN	2660	broad.mit.edu	37	2	190922080	190922080	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:190922080C>T	uc002urp.2	-	3	1165	c.1032G>A	c.(1030-1032)AAG>AAA	p.K344K		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	344					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTGGAGACATCTTTGTGGGAG	0.398													24	15					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201499624	201499624	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:201499624C>T	uc002uvx.2	+	21	2433	c.2332C>T	c.(2332-2334)CCC>TCC	p.P778S	AOX1_uc010zhf.1_Missense_Mutation_p.P334S|AOX1_uc010fsu.2_Missense_Mutation_p.P144S	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	778					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CACACAGTTTCCCAAATATAT	0.408													53	25					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203560637	203560637	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:203560637C>T	uc010zhx.1	+	2	645	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM117B_uc010zhw.1_Missense_Mutation_p.S212F	NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	212										ovary(1)	1						TCAAGCCCCTCCAGTATTATC	0.448													170	68					0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207437870	207437870	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:207437870C>T	uc002vbq.2	+	18	1911	c.1688C>T	c.(1687-1689)GCT>GTT	p.A563V	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	563	Disintegrin.|May bind the integrin receptor.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TGCCGGGATGCTGTGAACGAG	0.338													67	54					0	0	1	0	0
CRYGC	1420	broad.mit.edu	37	2	208994303	208994303	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:208994303C>T	uc002vco.3	-	2	152	c.114G>A	c.(112-114)GTG>GTA	p.V38V		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	38	Beta/gamma crystallin 'Greek key' 1.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		AGCCGCTCTCCACCCGGATGG	0.602													83	52					0	0	1	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279494	217279494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:217279494C>T	uc002vgc.3	+	3	397	c.67C>T	c.(67-69)CGC>TGC	p.R23C	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.R23C|SMARCAL1_uc010fvg.2_Missense_Mutation_p.R23C	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	23	Potential.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		GGCTCTGGCCCGCAGAGCTGA	0.498									Schimke_Immuno-Osseous_Dysplasia				97	69					0	0	1	0	0
PLCD4	84812	broad.mit.edu	37	2	219483456	219483457	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:219483456_219483457CC>TT	uc002vij.1	+	4	531_532	c.336_337CC>TT	c.(334-339)GCCCAG>GCTTAG	p.Q113*	PLCD4_uc010zkj.1_Nonsense_Mutation_p.Q60*|PLCD4_uc002vik.1_5'Flank|PLCD4_uc010zkk.1_5'Flank	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	113	PH.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TTGAGGAGGCCCAGATATGGAT	0.614													13	4					0	0	1	0	0
CDK5R2	8941	broad.mit.edu	37	2	219824873	219824873	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:219824873C>T	uc002vjf.2	+	1	476	c.331C>T	c.(331-333)CCC>TCC	p.P111S		NM_003936	NP_003927	Q13319	CD5R2_HUMAN	cyclin-dependent kinase 5, regulatory subunit 2	111					regulation of cyclin-dependent protein kinase activity	cyclin-dependent protein kinase 5 holoenzyme complex	cyclin-dependent protein kinase 5 activator activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.77e-07)|all cancers(144;0.000167)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCCGGGATCCCCCCGACGG	0.746													4	1					0	0	1	0	0
SLC23A3	151295	broad.mit.edu	37	2	220028152	220028152	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:220028152G>A	uc010zks.1	-	10	1510	c.1399C>T	c.(1399-1401)CTG>TTG	p.L467L	NHEJ1_uc002vjp.3_5'Flank|NHEJ1_uc002vjq.3_RNA|SLC23A3_uc010zkr.1_Silent_p.L475L|SLC23A3_uc010fwb.2_Silent_p.L350L	NM_001144889	NP_001138361	Q6PIS1	S23A3_HUMAN	solute carrier family 23 (nucleobase	467	Helical; (Potential).				transmembrane transport	integral to membrane	protein binding|transporter activity				0		Renal(207;0.0474)		Epithelial(149;9.27e-07)|all cancers(144;0.000156)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CATCTTGGCAGCAGCAAGGCC	0.527													4	162					0	0	1	0	0
SLC23A3	151295	broad.mit.edu	37	2	220034609	220034609	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:220034609G>A	uc010zks.1	-	1	209	c.98C>T	c.(97-99)ACC>ATC	p.T33I	NHEJ1_uc002vjq.3_RNA|SLC23A3_uc010zkr.1_Missense_Mutation_p.T33I|SLC23A3_uc010fwb.2_Missense_Mutation_p.T33I|SLC23A3_uc002vjs.1_5'Flank|SLC23A3_uc002vjt.1_5'Flank	NM_001144889	NP_001138361	Q6PIS1	S23A3_HUMAN	solute carrier family 23 (nucleobase	33	Cytoplasmic (Potential).				transmembrane transport	integral to membrane	protein binding|transporter activity				0		Renal(207;0.0474)		Epithelial(149;9.27e-07)|all cancers(144;0.000156)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAAGAGTGGGTGGAGGGATT	0.622													62	42					0	0	1	0	0
DNPEP	23549	broad.mit.edu	37	2	220247898	220247899	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:220247898_220247899GG>AA	uc010zlg.1	-	10	996_997	c.914_915CC>TT	c.(913-915)GCC>GTT	p.A305V	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Missense_Mutation_p.A297V|DNPEP_uc002vlf.1_Missense_Mutation_p.A283V|DNPEP_uc002vlh.2_Missense_Mutation_p.A244V|DNPEP_uc002vli.1_Missense_Mutation_p.A244V	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	287					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	GAGGCTCTGTGGCCAGGGAGCC	0.574													32	24					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220333457	220333457	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:220333457T>C	uc010fwg.2	+	11	3300	c.3300T>C	c.(3298-3300)TTT>TTC	p.F1100F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1100	Ig-like 5.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGACTCATTTTGGTACGGCCC	0.662													16	43					0	0	1	0	0
CHPF	79586	broad.mit.edu	37	2	220406443	220406443	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:220406443G>A	uc002vmc.3	-	2	1010	c.783C>T	c.(781-783)CCC>CCT	p.P261P	CHPF_uc010zlh.1_Silent_p.P99P|CHPF_uc002vmd.3_Silent_p.P261P|TMEM198_uc002vme.2_5'Flank|TMEM198_uc002vmf.2_5'Flank	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	261	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CTTCCAGGTGGGGGCGCAGTT	0.687											OREG0015229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	11					0	0	1	0	0
CUL3	8452	broad.mit.edu	37	2	225360656	225360656	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:225360656C>T	uc002vny.2	-	13	2119	c.1735G>A	c.(1735-1737)GGT>AGT	p.G579S	CUL3_uc010zls.1_Missense_Mutation_p.G513S|CUL3_uc010fwy.1_Missense_Mutation_p.G585S|CUL3_uc002vnz.1_Missense_Mutation_p.G26S	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	579					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ACTTGTGCACCTCCAACACCA	0.308													17	35					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226516273	226516273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:226516273C>T	uc002voe.2	+	6	2129	c.1954C>T	c.(1954-1956)CGT>TGT	p.R652C	KIAA1486_uc010fxa.1_3'UTR|KIAA1486_uc002vof.1_Intron	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	652										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GTTAGCCAATCGTGATTGACT	0.498													124	91					0	0	1	0	0
SP110	3431	broad.mit.edu	37	2	231037598	231037598	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:231037598G>A	uc002vqh.3	-	15	1908	c.1668C>T	c.(1666-1668)TTC>TTT	p.F556F	SP110_uc002vqg.3_Silent_p.F556F	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	556	PHD-type.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		AGTCCTCATGGAAGACTCGTG	0.587													22	23					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233346276	233346276	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:233346276G>A	uc002vsv.2	-	14	2134	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	ECEL1_uc010fya.1_Silent_p.F641F|ECEL1_uc010fyb.1_Silent_p.F350F	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	643	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCTTTCGCAGGAAGCGGCTGT	0.632													12	22					0	0	1	0	0
GIGYF2	26058	broad.mit.edu	37	2	233660913	233660913	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:233660913C>T	uc002vti.3	+	16	1958	c.1621C>T	c.(1621-1623)CCT>TCT	p.P541S	GIGYF2_uc010zmj.1_Missense_Mutation_p.P541S|GIGYF2_uc002vtg.2_Missense_Mutation_p.P535S|GIGYF2_uc002vtj.3_Missense_Mutation_p.P562S|GIGYF2_uc002vtk.3_Missense_Mutation_p.P541S|GIGYF2_uc002vth.3_Missense_Mutation_p.P535S|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.P372S	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	541	GYF.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TTACAAAGATCCTCAGGGAGA	0.383													19	42					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233990499	233990499	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:233990499C>T	uc010zmo.1	+	4	547	c.394C>T	c.(394-396)CCG>TCG	p.P132S	INPP5D_uc010zmp.1_Missense_Mutation_p.P131S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	132					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		AAGAAACATCCCGCTGACTGC	0.592													14	14					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234072499	234072499	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:234072499G>A	uc010zmo.1	+	11	1540	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	INPP5D_uc010zmp.1_Missense_Mutation_p.E462K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	463					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GGAGTGGCTGGAGATCCTCAA	0.557													44	30					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234869462	234869462	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:234869462G>C	uc002vvh.2	+	12	1445	c.1405G>C	c.(1405-1407)GAC>CAC	p.D469H	TRPM8_uc010fyj.2_Missense_Mutation_p.D157H	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	469	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TCTCATAAAGGACAGACCCAA	0.433													38	28					0	0	1	0	0
RBM44	375316	broad.mit.edu	37	2	238738022	238738022	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:238738022G>A	uc002vxi.3	+	13	2898	c.2766G>A	c.(2764-2766)TCG>TCA	p.S922S		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	921							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		GAATTAGTTCGAATAATTTAG	0.388													51	35					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241689879	241689879	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:241689879C>T	uc002vzy.2	-	26	2787	c.2641G>A	c.(2641-2643)GGC>AGC	p.G881S	KIF1A_uc010fzk.2_Missense_Mutation_p.G982S|KIF1A_uc002vzz.1_Missense_Mutation_p.G982S	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	881					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CGGAGGAAGCCCTTCACCTCG	0.642													5	31					0	0	1	0	0
HDLBP	3069	broad.mit.edu	37	2	242189371	242189371	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:242189371T>C	uc002waz.2	-	12	1625	c.1397A>G	c.(1396-1398)AAG>AGG	p.K466R	HDLBP_uc002wba.2_Missense_Mutation_p.K466R|HDLBP_uc002wbb.2_Missense_Mutation_p.K418R	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	466	KH 5.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		CACGGACACCTTGTACTGGTC	0.517													45	49					0	0	1	0	0
D2HGDH	728294	broad.mit.edu	37	2	242683189	242683189	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:242683189C>T	uc002wce.1	+	5	816	c.643C>T	c.(643-645)CGA>TGA	p.R215*	D2HGDH_uc010zpc.1_RNA|D2HGDH_uc010fzq.1_Nonsense_Mutation_p.R81*|D2HGDH_uc002wcg.1_RNA	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	215	FAD-binding PCMH-type.				2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		GCGGTTTCTTCGATATGGCTC	0.627													4	18					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1963686	1963686	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:1963686G>A	uc010gaj.2	-	2	287	c.45C>T	c.(43-45)TTC>TTT	p.F15F	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.F15F|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	15					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGGTGGAGGGGAACATGAGGA	0.562													17	31					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2381031	2381031	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:2381031G>A	uc002wfy.1	+	7	991	c.930G>A	c.(928-930)GTG>GTA	p.V310V	TGM6_uc010gal.1_Silent_p.V310V	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	310					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ACCTGAGTGTGGACAAATACG	0.617													31	79					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3674323	3674323	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:3674323G>A	uc002wja.2	-	13	3279	c.3279C>T	c.(3277-3279)CCC>CCT	p.P1093P	SIGLEC1_uc002wjb.1_5'Flank|SIGLEC1_uc002wiz.3_Silent_p.P1093P	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1093	Ig-like C2-type 11.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CGGTAGCCCCGGGCCACACCT	0.642													9	34					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3678767	3678767	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:3678767T>C	uc002wja.2	-	8	1800	c.1800A>G	c.(1798-1800)CAA>CAG	p.Q600Q	SIGLEC1_uc002wiz.3_Silent_p.Q600Q	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	600	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TGAATGTTGGTTGTCGAGGGG	0.652													4	11					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5294948	5294948	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:5294948G>A	uc010zqw.1	-	1	68	c.68C>T	c.(67-69)TCC>TTC	p.S23F	PROKR2_uc010zqx.1_Missense_Mutation_p.S23F|PROKR2_uc010zqy.1_Missense_Mutation_p.S23F|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	23	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AAAGGAGAGGGAGGAGGCATG	0.498										HNSCC(71;0.22)			57	62					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903853	5903853	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:5903853G>A	uc002wmg.2	+	4	1369	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	CHGB_uc010zqz.1_Missense_Mutation_p.E38K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	355						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCAGGCCCCTGAGGACCTGGA	0.527													83	80					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8113395	8113395	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:8113395G>A	uc002wnb.2	+	1	100	c.97G>A	c.(97-99)GAT>AAT	p.D33N	PLCB1_uc010zrb.1_Intron|PLCB1_uc010gbv.1_Missense_Mutation_p.D33N|PLCB1_uc002wmz.1_Missense_Mutation_p.D33N|PLCB1_uc002wna.2_Missense_Mutation_p.D33N	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	33				MAGAQPGVHALQLKPVCVSDSLKKGTKFVKWDDD -> MGS LQGIATKILIRILSDALIRKETDLKS (in Ref. 2; AAF86613).	activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CAAGTGGGATGATGTAAGTAT	0.672													11	22					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8637857	8637857	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:8637857C>T	uc002wnb.2	+	8	624	c.621C>T	c.(619-621)TTC>TTT	p.F207F	PLCB1_uc010zrb.1_Silent_p.F106F|PLCB1_uc002wna.2_Silent_p.F207F|PLCB1_uc002wnc.1_Silent_p.F106F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	207					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AAGAAGATTTCACTCCAGAAG	0.294													33	42					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9453439	9453439	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:9453439G>A	uc002wnf.2	+	35	3453	c.3317G>A	c.(3316-3318)CGA>CAA	p.R1106Q	PLCB4_uc010gbx.2_Missense_Mutation_p.R1118Q|PLCB4_uc002wne.2_Missense_Mutation_p.R1106Q|PLCB4_uc002wnh.2_Missense_Mutation_p.R953Q	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1106					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GCTTTTAGGCGAGTCAGGGAG	0.303													23	32					0	0	1	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033087	20033087	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:20033087G>A	uc002wrs.2	-	2	415	c.383C>T	c.(382-384)TCC>TTC	p.S128F	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.S116F	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	128					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AAACAAACAGGATCTCGGAAC	0.587													29	57					0	0	1	0	0
TM9SF4	9777	broad.mit.edu	37	20	30733200	30733200	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:30733200C>T	uc002wxj.2	+	8	1092	c.857C>T	c.(856-858)TCC>TTC	p.S286F	TM9SF4_uc010ztr.1_Missense_Mutation_p.S212F|TM9SF4_uc010zts.1_Missense_Mutation_p.S193F|TM9SF4_uc002wxk.2_Missense_Mutation_p.S269F|TM9SF4_uc010gdz.2_Missense_Mutation_p.S193F	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	286	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ATCATTAACTCCGTTGTTGTG	0.517													17	37					0	0	1	0	0
E2F1	1869	broad.mit.edu	37	20	32264941	32264941	+	Missense_Mutation	SNP	G	A	A	rs145759508		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:32264941G>A	uc002wzu.3	-	6	1176	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S	NECAB3_uc002wzm.3_5'Flank|NECAB3_uc002wzn.3_5'Flank|NECAB3_uc002wzo.3_5'Flank|NECAB3_uc002wzp.3_5'Flank|NECAB3_uc002wzq.3_5'Flank|NECAB3_uc002wzr.3_5'Flank|NECAB3_uc010geo.2_5'Flank	NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	346	Required for interaction with TRIM28.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						GACTGGCTGGGATCTGTGGTG	0.632													13	59					0	0	1	0	0
FAM83C	128876	broad.mit.edu	37	20	33874486	33874486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:33874486C>T	uc010zux.1	-	4	2214	c.2096G>A	c.(2095-2097)GGG>GAG	p.G699E	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.G354E	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	699										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CTTGGGACCCCCAGGCTCAGT	0.582													27	117					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34022575	34022575	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:34022575C>T	uc002xck.1	-	2	957	c.638G>A	c.(637-639)CGA>CAA	p.R213Q	GDF5_uc010gfc.1_Missense_Mutation_p.R213Q|uc002xcj.2_Missense_Mutation_p.S329L|GDF5_uc010zvc.1_Missense_Mutation_p.R213Q	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	213					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CACGGGACCTCGGTCATCTAG	0.612													36	128					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34451086	34451086	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:34451086C>T	uc002xek.1	+	6	683	c.572C>T	c.(571-573)CCC>CTC	p.P191L	PHF20_uc002xei.1_Missense_Mutation_p.P191L|PHF20_uc010gfo.1_Missense_Mutation_p.P191L|PHF20_uc002xej.1_Missense_Mutation_p.P75L|PHF20_uc002xel.1_Missense_Mutation_p.P53L	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	191	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GAAAAGCGACCCAAGCAGCCT	0.383													47	60					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34797731	34797731	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:34797731G>A	uc002xfb.2	+	15	2161	c.1990G>A	c.(1990-1992)GGG>AGG	p.G664R	EPB41L1_uc002xeu.2_Missense_Mutation_p.G590R|EPB41L1_uc010zvo.1_Missense_Mutation_p.G664R|EPB41L1_uc002xev.2_Missense_Mutation_p.G664R|EPB41L1_uc002xew.2_Missense_Mutation_p.G555R|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Missense_Mutation_p.G590R|EPB41L1_uc010gfq.2_Missense_Mutation_p.G763R	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	664					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					TCTCAACAAGGGGGCCCCCAG	0.637													18	45					0	0	1	0	0
C20orf117	140710	broad.mit.edu	37	20	35434313	35434313	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:35434313T>C	uc002xgd.1	-	9	2475	c.2148A>G	c.(2146-2148)ATA>ATG	p.I716M	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	716											0		Myeloproliferative disorder(115;0.00874)				GCTGAGCGTTTATCTCCTCTT	0.483													9	28					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35752064	35752064	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:35752064G>A	uc010zvu.1	-	17	2045	c.1954C>T	c.(1954-1956)CCA>TCA	p.P652S	C20orf132_uc002xgk.2_Missense_Mutation_p.P274S	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	51											0		Myeloproliferative disorder(115;0.00878)				AGGCCACTTGGGATGTCGACA	0.428													15	82					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869564	36869564	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:36869564G>A	uc002xhy.1	-	3	1241	c.969C>T	c.(967-969)CTC>CTT	p.L323L	KIAA1755_uc002xhz.1_Silent_p.L323L	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	323										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TGGCCTCTGAGAGAGGCAGTA	0.507													116	142					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40743942	40743942	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:40743942C>T	uc002xkg.2	-	22	3180	c.2996G>A	c.(2995-2997)CGA>CAA	p.R999Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R1018Q|PTPRT_uc010ggi.2_Missense_Mutation_p.R202Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	999	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGCCAGTATCGCACACATTT	0.438													24	71					0	0	1	0	0
GTSF1L	149699	broad.mit.edu	37	20	42355105	42355105	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:42355105G>A	uc002xld.2	-	1	538	c.230C>T	c.(229-231)CCT>CTT	p.P77L	GTSF1L_uc002xlc.2_Missense_Mutation_p.P77L	NM_176791	NP_789761	Q9H1H1	GTSFL_HUMAN	gametocyte specific factor 1-like isoform 1	77							metal ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GACTTTCAGAGGGTTCTCGGT	0.532													34	45					0	0	1	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42893196	42893196	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:42893196G>A	uc002xlq.2	+	5	824	c.757G>A	c.(757-759)GAG>AAG	p.E253K	GDAP1L1_uc002xlp.1_Missense_Mutation_p.E253K|GDAP1L1_uc010zwl.1_Missense_Mutation_p.E272K|GDAP1L1_uc010zwm.1_Missense_Mutation_p.E195K|GDAP1L1_uc010zwn.1_Missense_Mutation_p.E61K	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	253	GST C-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GCTGGAGAACGAGGGTGGGTG	0.602													27	28					0	0	1	0	0
CTSA	5476	broad.mit.edu	37	20	44523740	44523740	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:44523740C>T	uc002xqj.3	+	11	1530	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	CTSA_uc002xqh.2_Silent_p.I370I|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Silent_p.I353I|CTSA_uc002xqk.3_Silent_p.I352I	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	352					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCCTCAACATCCCGGAGCAGC	0.607													17	38					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45239121	45239121	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:45239121G>A	uc002xsf.1	-	3	543	c.505C>T	c.(505-507)CGA>TGA	p.R169*	SLC13A3_uc010ghn.1_Nonsense_Mutation_p.R138*|SLC13A3_uc010zxw.1_Nonsense_Mutation_p.R169*|SLC13A3_uc002xsg.1_Nonsense_Mutation_p.R122*|SLC13A3_uc010gho.1_Nonsense_Mutation_p.R122*|SLC13A3_uc010zxx.1_Nonsense_Mutation_p.R71*|SLC13A3_uc002xsi.3_Nonsense_Mutation_p.R122*	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	169	Cytoplasmic (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	GGGTCCTTTCGAACCTCCTTC	0.542													129	169					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45700845	45700845	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:45700845G>A	uc002xsm.2	+	6	811	c.437G>A	c.(436-438)GGA>GAA	p.G146E	EYA2_uc010ghp.2_Missense_Mutation_p.G146E|EYA2_uc002xsn.2_Missense_Mutation_p.G151E|EYA2_uc002xso.2_Missense_Mutation_p.G146E|EYA2_uc002xsp.2_Missense_Mutation_p.G146E|EYA2_uc002xsq.2_Missense_Mutation_p.G146E	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	146					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				TTCTATCAAGGAGGAAATGGA	0.488													16	12					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47582484	47582484	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:47582484C>T	uc002xtx.3	+	8	1135	c.983C>T	c.(982-984)CCC>CTC	p.P328L		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	328					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TGTGCTATTCCCCCAGGAGTT	0.473													25	23					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47648602	47648602	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:47648602C>T	uc002xtx.3	+	38	5232	c.5080C>T	c.(5080-5082)CTT>TTT	p.L1694F	ARFGEF2_uc010zyf.1_Missense_Mutation_p.L987F	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1694					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CAGTGAAGCTCTTGCCTATTT	0.393													45	176					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990575	47990575	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:47990575C>T	uc002xur.1	-	2	1686	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	KCNB1_uc002xus.1_Missense_Mutation_p.E508K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	508	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GATCCCTGTTCCTTGGTTTCA	0.443													102	151					0	0	1	0	0
CBLN4	140689	broad.mit.edu	37	20	54575842	54575842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:54575842C>T	uc002xxa.2	-	2	1138	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	118	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			ACTGTAAATTCCTTTTCTTGG	0.338													22	55					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57428497	57428497	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:57428497C>T	uc002xzw.2	+	1	462	c.177C>T	c.(175-177)ATC>ATT	p.I59I	GNASAS_uc002xzs.1_5'Flank|GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			ACGAGCCCATCCCCGTCGAGA	0.647			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			4	11					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62198490	62198490	+	Missense_Mutation	SNP	C	T	T	rs114630740	by1000genomes	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr20:62198490C>T	uc002yfm.2	-	7	3113	c.2221G>A	c.(2221-2223)GAG>AAG	p.E741K	PRIC285_uc002yfl.1_Missense_Mutation_p.E172K	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	741					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CGGTAGTTCTCGTGGAAGACC	0.672													19	89					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058251	11058251	+	Silent	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:11058251A>T	uc002yit.1	-	3	397	c.189T>A	c.(187-189)ATT>ATA	p.I63I	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GCACAAGGATAATGATACATC	0.433													12	98					0	0	1	0	0
KRTAP19-5	337972	broad.mit.edu	37	21	31874201	31874201	+	Missense_Mutation	SNP	C	T	T	rs73186218	by1000genomes	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:31874201C>T	uc011ada.1	-	1	208	c.208G>A	c.(208-210)GGA>AGA	p.G70R		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	keratin associated protein 19-5	70						intermediate filament	protein binding				0						CAATAAAATCCAGAGAATCCA	0.502													24	59					0	0	1	0	0
C21orf63	59271	broad.mit.edu	37	21	33867346	33867346	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:33867346C>T	uc002ypr.1	+	5	1054	c.644C>T	c.(643-645)TCT>TTT	p.S215F	C21orf63_uc002yps.1_RNA|C21orf63_uc010glw.1_Missense_Mutation_p.S215F|C21orf63_uc002ypt.1_RNA|C21orf63_uc002ypu.1_Missense_Mutation_p.S120F|C21orf63_uc011adq.1_5'UTR	NM_058187	NP_478067	P58658	CU063_HUMAN	hypothetical protein LOC59271 precursor	215	SUEL-type lectin 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(2)|pancreas(1)	3						GATTGCTTGTCTTACTCAGCT	0.473													20	59					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38558073	38558073	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:38558073C>T	uc002yvz.2	+	37	4929	c.4824C>T	c.(4822-4824)ATC>ATT	p.I1608I	TTC3_uc002ywa.2_Silent_p.I1608I|TTC3_uc002ywb.2_Silent_p.I1608I|TTC3_uc010gnf.2_Silent_p.I1373I|TTC3_uc002ywc.2_Silent_p.I1298I|TTC3_uc002ywd.1_Silent_p.I672I	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1608					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				CCCTTGAAATCAGGCAAATTA	0.274													4	10					0	0	1	0	0
MX2	4600	broad.mit.edu	37	21	42769547	42769547	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:42769547C>T	uc002yzf.1	+	8	1182	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L	MX2_uc011aer.1_RNA|MX2_uc002yzg.1_Silent_p.L83L|MX2_uc010gop.1_5'Flank	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	360					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				CAGAGTTCTCCTGGAGGAGGG	0.527													12	28					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43809050	43809050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:43809050C>T	uc002zbb.2	-	4	511	c.310G>A	c.(310-312)GAG>AAG	p.E104K	TMPRSS3_uc002zaz.2_5'UTR|TMPRSS3_uc002zba.2_5'UTR|TMPRSS3_uc002zbc.2_Missense_Mutation_p.E104K|TMPRSS3_uc002zbd.2_Missense_Mutation_p.E104K	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	104	LDL-receptor class A.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CAGCGGTACTCGTCCTCCCCG	0.532													16	46					0	0	1	0	0
PKNOX1	5316	broad.mit.edu	37	21	44441534	44441534	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:44441534A>C	uc002zcq.1	+	8	1030	c.842A>C	c.(841-843)CAC>CCC	p.H281P	PKNOX1_uc002zcp.1_Missense_Mutation_p.H281P|PKNOX1_uc011aex.1_Missense_Mutation_p.H164P	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	281	Homeobox; TALE-type.						sequence-specific DNA binding			large_intestine(2)	2						CTCTTCCAGCACATCGGGGTA	0.557													15	36					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45668927	45668927	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:45668927T>C	uc002zeg.1	-	11	1461	c.977A>G	c.(976-978)AAC>AGC	p.N326S	DNMT3L_uc002zeh.1_Missense_Mutation_p.N326S	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	326					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		GGCTGGGATGTTGCTCCACAC	0.612													10	9					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45815369	45815369	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:45815369C>T	uc002zet.1	+	13	2080	c.1867C>T	c.(1867-1869)CGT>TGT	p.R623C	TRPM2_uc002zeu.1_Missense_Mutation_p.R623C|TRPM2_uc002zew.1_Missense_Mutation_p.R623C|TRPM2_uc010gpt.1_Missense_Mutation_p.R623C|TRPM2_uc002zex.1_Missense_Mutation_p.R409C|TRPM2_uc002zey.1_Missense_Mutation_p.R136C	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	623	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGACCCCATCCGTGACCTTCT	0.572													30	53					0	0	1	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45993649	45993650	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:45993649_45993650CC>TT	uc002zfk.1	+	1	44_45	c.14_15CC>TT	c.(13-15)TCC>TTT	p.S5F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	5						keratin filament					0						TCCGTCTGCTCCAGCGACCTGA	0.644													25	43					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47407554	47407554	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:47407554G>A	uc002zhu.1	+	8	892	c.790G>A	c.(790-792)GAC>AAC	p.D264N		NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	264	Cell attachment site.|Triple-helical region.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	GCTCCGGGGCGACCCCGGCTT	0.687													23	33					0	0	1	0	0
YDJC	150223	broad.mit.edu	37	22	21982815	21982815	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:21982815C>T	uc002zvb.2	-	5	901	c.864G>A	c.(862-864)CAG>CAA	p.Q288Q	YDJC_uc002zvc.2_RNA|YDJC_uc002zvd.2_3'UTR	NM_001017964	NP_001017964	A8MPS7	YDJC_HUMAN	YdjC homolog	288					carbohydrate metabolic process		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds				0	Colorectal(54;0.105)					GCACGCCATCCTGGGCAAGCT	0.687													9	36					0	0	1	0	0
PPIL2	23759	broad.mit.edu	37	22	22025287	22025287	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:22025287C>G	uc010gtj.1	+	4	246	c.130C>G	c.(130-132)CTC>GTC	p.L44V	PPIL2_uc002zvh.3_Missense_Mutation_p.L44V|PPIL2_uc002zvi.3_Missense_Mutation_p.L44V|PPIL2_uc002zvg.3_Missense_Mutation_p.L44V|PPIL2_uc011aij.1_Intron	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	44	U-box.				blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					CTTTTTCAGTCTCTCTCTGCA	0.502													25	103					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23135302	23135302	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:23135302C>T	uc011aim.1	+	251		c.11944C>T								Parts of antibodies, mostly variable regions.												0						AACTATGTCTCCTGGTACCAA	0.552													75	204					0	0	1	0	0
CABIN1	23523	broad.mit.edu	37	22	24483528	24483528	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:24483528C>T	uc002zzi.1	+	23	3514	c.3387C>T	c.(3385-3387)TTC>TTT	p.F1129F	CABIN1_uc002zzj.1_Silent_p.F1079F|CABIN1_uc002zzl.1_Silent_p.F1129F	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1129	TPR 6.				cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGAACTGCTTCCGTCGGGCCC	0.557													16	40					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26173736	26173736	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:26173736G>A	uc003abz.1	+	8	2306	c.2056G>A	c.(2056-2058)GGC>AGC	p.G686S	MYO18B_uc003aca.1_Missense_Mutation_p.G567S|MYO18B_uc010guy.1_Missense_Mutation_p.G567S|MYO18B_uc010guz.1_Missense_Mutation_p.G567S|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Missense_Mutation_p.G199S	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	686	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CAGTGTGGATGGCAGGGTCTC	0.572													26	55					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422615	26422615	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:26422615C>T	uc003abz.1	+	43	6925	c.6675C>T	c.(6673-6675)TCC>TCT	p.S2225S	MYO18B_uc003aca.1_Silent_p.S2106S|MYO18B_uc010guy.1_Silent_p.S2107S|MYO18B_uc010guz.1_Silent_p.S2105S|MYO18B_uc011aka.1_Silent_p.S1379S|MYO18B_uc011akb.1_Silent_p.S1738S|MYO18B_uc010gva.1_Silent_p.S208S|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2225						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AACCTGCTTCCTCTCCCCTGG	0.567													9	28					0	0	1	0	0
C22orf31	25770	broad.mit.edu	37	22	29454796	29454796	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:29454796C>T	uc003aej.1	-	3	934	c.807G>A	c.(805-807)AGG>AGA	p.R269R		NM_015370	NP_056185	O95567	CV031_HUMAN	hypothetical protein LOC25770	269											0						CTGGCTGCTTCCTGCCAGGGA	0.522													33	71					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29881793	29881793	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:29881793C>A	uc003afo.2	+	3	1236	c.1165C>A	c.(1165-1167)CTC>ATC	p.L389I		NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	389	Coil 2B.|Rod.				cell death|nervous system development	neurofilament					0						CCAGGACCTGCTCAATGTCAA	0.557													17	40					1.96292e-10	1.98936e-10	1	1	0
GATSL3	652968	broad.mit.edu	37	22	30682915	30682915	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:30682915G>A	uc003ahd.2	-	5	658	c.528C>T	c.(526-528)CCC>CCT	p.P176P	GATSL3_uc003ahc.2_Silent_p.P176P|GATSL3_uc003ahe.2_Silent_p.P177P|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Silent_p.P349P|GATSL3_uc010gvr.2_Silent_p.P63P|GATSL3_uc010gvs.2_Missense_Mutation_p.P132L	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	176										breast(1)	1						GGCTCTGGATGGGATGCACCG	0.637											OREG0026457	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	74					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533873	31533873	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:31533873G>A	uc003aka.2	-	4	1018	c.889C>T	c.(889-891)CCA>TCA	p.P297S		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	297					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GGAGGGGCTGGGCTCCGGGAG	0.657													33	103					0	0	1	0	0
APOL5	80831	broad.mit.edu	37	22	36123222	36123223	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:36123222_36123223CC>TT	uc003aof.2	+	3	1107_1108	c.1107_1108CC>TT	c.(1105-1110)TCCCGT>TCTTGT	p.R370C		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	370					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						TTCGAGGATCCCGTGTGGTTAA	0.604													18	83					0	0	1	0	0
C22orf33	339669	broad.mit.edu	37	22	37397962	37397962	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:37397962C>T	uc003aqf.2	-	3	551	c.405G>A	c.(403-405)ACG>ACA	p.T135T	C22orf33_uc003aqe.2_Silent_p.T50T	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	135											0						CCTTCTGGTTCGTGGGCGTGC	0.622													5	19					0	0	1	0	0
CBY1	25776	broad.mit.edu	37	22	39064102	39064102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:39064102C>T	uc003awb.2	+	3	319	c.43C>T	c.(43-45)CCT>TCT	p.P15S	CBY1_uc011any.1_Missense_Mutation_p.P15S|CBY1_uc003awc.2_Missense_Mutation_p.P15S	NM_001002880	NP_001002880	Q9Y3M2	CBY1_HUMAN	PKD2 interactor, golgi and endoplasmic reticulum	15					cardiac muscle cell differentiation|fat cell differentiation|negative regulation of transcription, DNA-dependent|protein localization	nuclear speck|trans-Golgi network	beta-catenin binding|identical protein binding			ovary(1)	1	Melanoma(58;0.04)					GAAGACACCTCCTCGGAAGTC	0.522													17	40					0	0	1	0	0
CBY1	25776	broad.mit.edu	37	22	39067154	39067154	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:39067154C>T	uc003awb.2	+	5	540	c.264C>T	c.(262-264)AAC>AAT	p.N88N	CBY1_uc011any.1_3'UTR|CBY1_uc003awc.2_Silent_p.N88N|uc003awd.2_RNA	NM_001002880	NP_001002880	Q9Y3M2	CBY1_HUMAN	PKD2 interactor, golgi and endoplasmic reticulum	88	Minimal region for the interaction with PKD2.|Potential.				cardiac muscle cell differentiation|fat cell differentiation|negative regulation of transcription, DNA-dependent|protein localization	nuclear speck|trans-Golgi network	beta-catenin binding|identical protein binding			ovary(1)	1	Melanoma(58;0.04)					AGGAAGAGAACAATCTCTTGC	0.572													28	90					0	0	1	0	0
APOBEC3H	164668	broad.mit.edu	37	22	39497401	39497401	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:39497401C>T	uc011aoh.1	+	3	376	c.310C>T	c.(310-312)CTG>TTG	p.L104L	APOBEC3H_uc011aoi.1_5'Flank|APOBEC3H_uc003axa.3_5'Flank	NM_181773	NP_861438	Q6NTF7	ABC3H_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	104					DNA cytosine deamination|negative regulation of retroviral genome replication|negative regulation of transposition	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Melanoma(58;0.04)					CCATCTGAACCTGGGCATCTT	0.612													16	38					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283720	40283720	+	Silent	SNP	C	T	T	rs143952812		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:40283720C>T	uc003ayg.2	-	2	284	c.33G>A	c.(31-33)GTG>GTA	p.V11V		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	11	ENTH.							p.V11V(1)		ovary(2)|skin(1)	3	Melanoma(58;0.0749)					AGTAATTTTTCACAAAGTTTT	0.398													9	39					0	0	1	0	0
MEI1	150365	broad.mit.edu	37	22	42180389	42180389	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:42180389T>A	uc003baz.1	+	25	3159	c.3134T>A	c.(3133-3135)CTC>CAC	p.L1045H	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.L431H|MEI1_uc003bbc.1_Missense_Mutation_p.L413H|MEI1_uc010gym.1_Missense_Mutation_p.L378H|MEI1_uc003bbd.1_Missense_Mutation_p.L288H|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc011apf.1_Missense_Mutation_p.L59H|MEI1_uc010gyo.1_Missense_Mutation_p.L59H|MEI1_uc003bbf.2_Missense_Mutation_p.L59H|MEI1_uc003bbg.2_Missense_Mutation_p.L59H	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1045							binding			central_nervous_system(1)|skin(1)	2						TTGAAGGCTCTCAGCTTTCCA	0.498													11	33					0	0	1	0	0
WBP2NL	164684	broad.mit.edu	37	22	42418267	42418267	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:42418267C>T	uc011ape.1	+	6	437	c.421C>T	c.(421-423)CCA>TCA	p.P141S	WBP2NL_uc003bbt.2_Missense_Mutation_p.P141S|WBP2NL_uc011apk.1_Missense_Mutation_p.P13S|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	141					egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						CCGAGGATTTCCACTTAGAAC	0.373													23	48					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43607014	43607014	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:43607014G>A	uc003bdt.1	-	18	2385	c.2297C>T	c.(2296-2298)CCC>CTC	p.P766L		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	766					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GCCAAACTCGGGCTGGTAGGT	0.637													17	28					0	0	1	0	0
UPK3A	7380	broad.mit.edu	37	22	45691514	45691514	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:45691514G>A	uc003bfy.2	+	6	784	c.778G>A	c.(778-780)GGG>AGG	p.G260R	UPK3A_uc010gzy.2_Missense_Mutation_p.G139R	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	260	Cytoplasmic (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CAAGTCGCTGGGGGCCTCGGA	0.612													18	77					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50716104	50716104	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:50716104G>A	uc003bkv.3	-	33	5218	c.5112C>T	c.(5110-5112)GTC>GTT	p.V1704V	PLXNB2_uc003bkt.1_Silent_p.V496V|PLXNB2_uc003bku.1_Silent_p.V689V	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1704	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCACCTCGTGGACATGCACGT	0.622													18	75					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50878455	50878456	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:50878455_50878456GG>AA	uc003blb.1	+	22	2773_2774	c.2351_2352GG>AA	c.(2350-2352)CGG>CAA	p.R784Q	SAPS2_uc003bky.1_Missense_Mutation_p.R758Q|SAPS2_uc003bkz.1_Missense_Mutation_p.R757Q|SAPS2_uc003blc.2_Missense_Mutation_p.R784Q|SAPS2_uc003bla.1_Missense_Mutation_p.R758Q|SAPS2_uc003bld.1_Missense_Mutation_p.R317Q	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	784						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		GAGGGCAGCCGGAGCCAAGGCC	0.649													7	33					0	0	1	0	0
ODF3B	440836	broad.mit.edu	37	22	50968984	50968984	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr22:50968984C>T	uc003bmh.2	-	7	824	c.687G>A	c.(685-687)CGG>CGA	p.R229R	TYMP_uc003bmb.3_5'Flank|TYMP_uc003bmc.3_5'Flank|TYMP_uc003bmd.3_5'Flank|TYMP_uc010hbd.2_5'Flank|TYMP_uc003bme.3_5'Flank|TYMP_uc003bmf.3_5'Flank|TYMP_uc011arz.1_5'Flank|ODF3B_uc003bmg.2_Missense_Mutation_p.E206K	NM_001014440	NP_001014440	A8MYP8	ODF3B_HUMAN	outer dense fiber of sperm tails 3B	229											0						CGCGGGGCTTCCGGTGCTGCG	0.736													3	4					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887625	3887625	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:3887625C>T	uc003bpt.3	+	2	2061	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	434	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CTTCCCAAATCGTTTAAACGT	0.478													22	61					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4714878	4714878	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:4714878G>A	uc003bqa.2	+	21	2611	c.2263G>A	c.(2263-2265)GAA>AAA	p.E755K	ITPR1_uc010hca.1_Missense_Mutation_p.E740K|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.E740K	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	755	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GGCCATCAACGAAATCTCAGG	0.542													6	20					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620525	7620525	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:7620525C>T	uc003bqm.2	+	8	2206	c.1932C>T	c.(1930-1932)TTC>TTT	p.F644F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.F644F|GRM7_uc003bql.2_Silent_p.F644F|GRM7_uc003bqn.1_Silent_p.F227F|GRM7_uc010hch.1_Silent_p.F155F	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	644	Helical; Name=2; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TCATCACTTTCCTGATGATTG	0.488													31	82					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620628	7620628	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:7620628C>T	uc003bqm.2	+	8	2309	c.2035C>T	c.(2035-2037)CGG>TGG	p.R679W	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R679W|GRM7_uc003bql.2_Missense_Mutation_p.R679W|GRM7_uc003bqn.1_Missense_Mutation_p.R262W|GRM7_uc010hch.1_Missense_Mutation_p.R190W	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	679	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GAAAACAAATCGGATTTATCG	0.448													14	45					0	0	1	0	0
LMCD1	29995	broad.mit.edu	37	3	8579050	8579050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:8579050C>T	uc003bqq.2	+	3	425	c.311C>T	c.(310-312)CCT>CTT	p.P104L	LMCD1_uc011atd.1_Missense_Mutation_p.P31L|LMCD1_uc011ate.1_Intron|LMCD1_uc011atf.1_Missense_Mutation_p.P31L	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	104	PET.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		ATGACCAACCCTATTGCTACT	0.547													52	151					0	0	1	0	0
C3orf32	51066	broad.mit.edu	37	3	8675472	8675472	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:8675472C>T	uc003bqu.2	-	4	399	c.153G>A	c.(151-153)GCG>GCA	p.A51A	C3orf32_uc003bqz.2_Silent_p.A51A|C3orf32_uc003bqt.2_5'UTR|C3orf32_uc011atg.1_Silent_p.A73A|C3orf32_uc003bqv.2_5'UTR|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Silent_p.A51A	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	51										skin(1)	1						CCTCCGTCATCGCAGGGACTC	0.647													18	33					0	0	1	0	0
CAMK1	8536	broad.mit.edu	37	3	9804831	9804831	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:9804831G>A	uc003bst.2	-	4	460	c.282C>T	c.(280-282)ATC>ATT	p.I94I	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_5'Flank|uc003bsv.1_RNA	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	94	Protein kinase.				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		ACAGCTGCATGATGAGGTAGA	0.547													18	58					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10400425	10400425	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:10400425C>T	uc003bvt.2	-	14	2525	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E651K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E651K|ATP2B2_uc010hdo.2_Missense_Mutation_p.E401K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	696	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CAGGTGAGTTCGTTGAGGATG	0.657													14	39					0	0	1	0	0
SYN2	6854	broad.mit.edu	37	3	12211286	12211286	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:12211286G>A	uc003bwm.2	+	14	1352	c.1188G>A	c.(1186-1188)GGG>GGA	p.G396G	SYN2_uc003bwl.1_Silent_p.G396G|SYN2_uc003bwn.2_Silent_p.G70G	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	396					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						CACTGATTGGGGAACATCAGG	0.532													75	202					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13378289	13378289	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:13378289C>T	uc003bxv.1	-	27	3765	c.3682G>A	c.(3682-3684)GAG>AAG	p.E1228K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1228	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTACCTACCTCGTGGTGCCGC	0.647													15	25					0	0	1	0	0
WNT7A	7476	broad.mit.edu	37	3	13916510	13916510	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:13916510G>A	uc003bye.1	-	2	537	c.232C>T	c.(232-234)CGC>TGC	p.R78C		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	78					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CGGCCATTGCGGAACTGAAAC	0.607													9	38					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14558700	14558700	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:14558700G>A	uc011avi.1	-	12	1472	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F	GRIP2_uc011avh.1_Missense_Mutation_p.S22F	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	393					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGTCGGCGAGGAAAAGGGAGT	0.622													10	29					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14814336	14814336	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:14814336G>A	uc003byy.2	+	17	3073	c.2669G>A	c.(2668-2670)AGG>AAG	p.R890K	C3orf20_uc003byz.2_Missense_Mutation_p.R768K|C3orf20_uc003bza.2_Missense_Mutation_p.R768K|C3orf20_uc003bzb.1_3'UTR|C3orf20_uc011avj.1_Missense_Mutation_p.R217K	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	890						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CCTCTCAGCAGGGACAGCAAG	0.592													7	33					0	0	1	0	0
CAPN7	23473	broad.mit.edu	37	3	15265016	15265016	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:15265016C>T	uc003bzn.2	+	6	943	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NM_014296	NP_055111	Q9Y6W3	CAN7_HUMAN	calpain 7	225					proteolysis	nucleus	calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1						AGAATATGTTCCTTTCATGAA	0.318													16	58					0	0	1	0	0
METTL6	131965	broad.mit.edu	37	3	15457302	15457302	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:15457302G>T	uc003bzs.1	-	4	766	c.508C>A	c.(508-510)CTT>ATT	p.L170I	METTL6_uc011avp.1_Missense_Mutation_p.L125I|METTL6_uc003bzt.1_Missense_Mutation_p.L170I|METTL6_uc010hen.1_5'Flank	NM_152396	NP_689609	Q8TCB7	METL6_HUMAN	methyltransferase like 6	170							methyltransferase activity				0						TGTAAGACAAGGTGCATCTTA	0.428													24	59					2.79863e-10	2.8348e-10	1	1	0
ANKRD28	23243	broad.mit.edu	37	3	15762437	15762438	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:15762437_15762438GG>AA	uc003caj.1	-	8	1033_1034	c.890_891CC>TT	c.(889-891)GCC>GTT	p.A297V	ANKRD28_uc003cai.1_Missense_Mutation_p.A143V|ANKRD28_uc011avz.1_Missense_Mutation_p.A143V|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011awa.1_RNA|ANKRD28_uc003cal.1_Missense_Mutation_p.A327V|ANKRD28_uc003cam.2_Missense_Mutation_p.A330V	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	297	ANK 8.					nucleoplasm	protein binding			breast(1)	1						TATTGACATCGGCCCCATTGCC	0.307													16	38					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19559495	19559495	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:19559495G>A	uc003cbk.1	+	15	2743	c.2548G>A	c.(2548-2550)GAG>AAG	p.E850K	KCNH8_uc010hex.1_Missense_Mutation_p.E311K	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	850	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TTCAGATCCAGAGATTGGAGC	0.408													14	58					0	0	1	0	0
EFHB	151651	broad.mit.edu	37	3	19940296	19940296	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:19940296C>T	uc003cbl.3	-	8	1740	c.1544G>A	c.(1543-1545)GGA>GAA	p.G515E	EFHB_uc003cbm.2_Missense_Mutation_p.G385E	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	515					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						GAGACAAGCTCCAAATGTGCA	0.388													14	44					0	0	1	0	0
NEK10	152110	broad.mit.edu	37	3	27216230	27216230	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:27216230C>T	uc010hfk.2	-	6	765	c.536G>A	c.(535-537)GGC>GAC	p.G179D	NEK10_uc003cds.1_Missense_Mutation_p.G264D|NEK10_uc010hfj.2_Missense_Mutation_p.G179D			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	867							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GGCCTGGAAGCCTTCAGGGGG	0.502													37	105					0	0	1	0	0
STT3B	201595	broad.mit.edu	37	3	31674562	31674562	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:31674562C>T	uc011axe.1	+	15	2323	c.2323C>T	c.(2323-2325)CCT>TCT	p.P775S		NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	775					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						AGTAAAAGCACCTGATAACAG	0.378													8	34					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874420	36874420	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:36874420G>T	uc003cgj.2	-	12	5174	c.4872C>A	c.(4870-4872)GCC>GCA	p.A1624A		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2174					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTAAACACTTGGCTTCACAAC	0.423													6	13					0.00116845	0.00117344	1	1	0
ITGA9	3680	broad.mit.edu	37	3	37818899	37818899	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:37818899G>A	uc003chd.2	+	24	2611	c.2558G>A	c.(2557-2559)GGA>GAA	p.G853E		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	853	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		CAAGAGAAGGGAAACTGCTCT	0.433													17	41					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739043	38739043	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:38739043G>A	uc003ciq.2	-	27	5668	c.5668C>T	c.(5668-5670)CCA>TCA	p.P1890S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1890					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCTTCATCTGGGAGTGATGCA	0.498													28	79					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38770165	38770165	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:38770165G>A	uc003ciq.2	-	15	2508	c.2508C>T	c.(2506-2508)TTC>TTT	p.F836F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	836	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGAAAGAGTGGAAGAAGTCGT	0.507													14	40					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39227656	39227656	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:39227656C>T	uc003cjk.1	-	2	3502	c.3281G>A	c.(3280-3282)CGG>CAG	p.R1094Q	XIRP1_uc003cji.2_Missense_Mutation_p.R1094Q|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1094							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCCAGCTTTCCGAAGACCGTC	0.592													24	70					0	0	1	0	0
RPSA	3921	broad.mit.edu	37	3	39449176	39449176	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:39449176A>G	uc003cjp.2	+	2	117	c.32A>G	c.(31-33)AAG>AGG	p.K11R	RPSA_uc003cjq.2_Missense_Mutation_p.K11R|RPSA_uc003cjr.2_Missense_Mutation_p.K11R|RPSA_uc003cjt.2_5'Flank|SNORA6_uc003cjs.1_5'Flank	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	11					cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		ctgcaaatgaaggagGAGGAT	0.343													10	20					0	0	1	0	0
ZNF620	253639	broad.mit.edu	37	3	40557619	40557619	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:40557619C>G	uc003ckk.2	+	5	683	c.534C>G	c.(532-534)AGC>AGG	p.S178R	ZNF620_uc003ckl.2_Missense_Mutation_p.S64R	NM_175888	NP_787084	Q6ZNG0	ZN620_HUMAN	zinc finger protein 620	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		AAAATATTAGCGTCAGCACAC	0.408													3	22					0	0	1	0	0
CCK	885	broad.mit.edu	37	3	42304977	42304977	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:42304977C>T	uc003clc.1	-	2	355	c.146G>A	c.(145-147)AGA>AAA	p.R49K	CCK_uc003cld.1_Missense_Mutation_p.R49K|CCK_uc011azk.1_Missense_Mutation_p.R49K	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	49					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GCCATCCGTTCTCTGCGATAC	0.687													25	70					0	0	1	0	0
VIPR1	7433	broad.mit.edu	37	3	42576563	42576563	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:42576563G>A	uc003clf.2	+	11	1231	c.1107G>A	c.(1105-1107)AAG>AAA	p.K369K	VIPR1_uc011azl.1_Silent_p.K321K|VIPR1_uc011azm.1_Silent_p.K159K|VIPR1_uc011azn.1_Silent_p.K342K|VIPR1_uc003clg.2_Silent_p.K14K	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	369	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		CTGAAGTGAAGATGGTCTTTG	0.502													39	123					0	0	1	0	0
ZNF197	10168	broad.mit.edu	37	3	44672663	44672663	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:44672663C>T	uc003cnm.2	+	3	706	c.500C>T	c.(499-501)CCG>CTG	p.P167L	ZNF197_uc003cnn.2_Missense_Mutation_p.P167L|ZNF197_uc003cno.2_RNA|ZNF197_uc003cnp.2_Missense_Mutation_p.P167L	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	167					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		GAAATTTGCCCGCATCCTCCT	0.527													18	54					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45153805	45153805	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:45153805G>A	uc003com.2	-	3	560	c.425C>T	c.(424-426)TCC>TTC	p.S142F	CDCP1_uc003con.2_Missense_Mutation_p.S142F	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	142	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GCGAGGGATGGAAAACTGCAG	0.557													47	146					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	46009409	46009409	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:46009409G>A	uc003cpb.3	-	8	1623	c.1417C>T	c.(1417-1419)CTG>TTG	p.L473L	FYCO1_uc011bal.1_Silent_p.L473L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	473	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		AACTCCTGCAGCCGTCGCCAG	0.637													25	88					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46245091	46245091	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:46245091G>A	uc003cph.1	-	2	785	c.714C>T	c.(712-714)GTC>GTT	p.V238V	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	238	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AAATCAAACGGACAGCTTTGG	0.388													22	19					0	0	1	0	0
RTP3	83597	broad.mit.edu	37	3	46542052	46542052	+	Missense_Mutation	SNP	G	A	A	rs116177254	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:46542052G>A	uc003cps.1	+	2	430	c.362G>A	c.(361-363)CGA>CAA	p.R121Q		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	121	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		CTGGTGTTCCGAATTCTGAAG	0.443													36	88					0	0	1	0	0
MAP4	4134	broad.mit.edu	37	3	48040154	48040154	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:48040154G>A	uc003csb.2	-	2	723	c.197C>T	c.(196-198)CCG>CTG	p.P66L	MAP4_uc003csc.3_Missense_Mutation_p.P66L|MAP4_uc011bbf.1_Missense_Mutation_p.P66L|MAP4_uc003csf.3_Missense_Mutation_p.P66L|MAP4_uc003csg.2_Missense_Mutation_p.P66L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	66					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TTCTGAGCACGGTTTCTTCTT	0.403													33	93					0	0	1	0	0
NME6	10201	broad.mit.edu	37	3	48338250	48338250	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:48338250C>T	uc003csp.3	-	3	211	c.160G>A	c.(160-162)GAA>AAA	p.E54K	NME6_uc003cso.2_Missense_Mutation_p.E62K|NME6_uc011bbh.1_Missense_Mutation_p.E54K|NME6_uc010hju.2_Intron|NME6_uc011bbi.1_Missense_Mutation_p.E54K	NM_005793	NP_005784	O75414	NDK6_HUMAN	nucleoside diphosphate kinase type 6	54					anti-apoptosis|apoptosis|CTP biosynthetic process|GTP biosynthetic process|negative regulation of cell growth|negative regulation of mitosis|UTP biosynthetic process	mitochondrion	ATP binding|metal ion binding|nucleoside diphosphate kinase activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00609)		TGGCAATCTTCCTTTCTCCAC	0.428													14	38					0	0	1	0	0
DAG1	1605	broad.mit.edu	37	3	49569593	49569593	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:49569593C>T	uc003cxc.3	+	3	2067	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	550	Peptidase S72.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GGCGAGAAGTCCTGGGTACAG	0.552													5	23					0	0	1	0	0
VPRBP	9730	broad.mit.edu	37	3	51475656	51475656	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:51475656G>A	uc003dbe.1	-	8	939	c.771C>T	c.(769-771)ACC>ACT	p.T257T	VPRBP_uc003dbg.1_Silent_p.T257T	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	257					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		CCTCAGGTTTGGTTGTTGAGT	0.438													71	174					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52817134	52817134	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:52817134G>A	uc003dfs.2	+	9	1116	c.1092G>A	c.(1090-1092)CTG>CTA	p.L364L	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	364	VWFA.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GCTTTTCCCTGGATGAGGGTA	0.542													6	13					0	0	1	0	0
ITIH3	3699	broad.mit.edu	37	3	52841067	52841067	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:52841067G>A	uc003dfv.2	+	19	2243	c.2207G>A	c.(2206-2208)AGG>AAG	p.R736K	ITIH3_uc011bek.1_Missense_Mutation_p.R544K	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	736					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CTGTGGAACAGGGCCGTGCCG	0.473													5	6					0	0	1	0	0
TMEM110	375346	broad.mit.edu	37	3	52876848	52876848	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:52876848G>A	uc003dge.2	-	7	828	c.747C>T	c.(745-747)TCC>TCT	p.S249S	MUSTN1_uc003dgb.3_Silent_p.S41S|TMEM110_uc003dgc.3_Silent_p.S249S	NM_198563	NP_940965	Q86TL2	TM110_HUMAN	transmembrane protein 110	249						integral to membrane				large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.72e-05)|Kidney(197;0.000777)|KIRC - Kidney renal clear cell carcinoma(197;0.000915)|OV - Ovarian serous cystadenocarcinoma(275;0.0541)		ACTCCTCGTGGGATGCGGCCC	0.592													19	30					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53757600	53757600	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:53757600G>A	uc003dgv.3	+	13	1969	c.1806G>A	c.(1804-1806)ACG>ACA	p.T602T	CACNA1D_uc003dgu.3_Silent_p.T622T|CACNA1D_uc003dgy.3_Silent_p.T602T|CACNA1D_uc003dgw.3_Silent_p.T269T	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	602	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TCACTGAGACGATCTTGGTGG	0.473													57	191					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54420801	54420801	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:54420801G>A	uc003dhf.2	+	4	429	c.381G>A	c.(379-381)CAG>CAA	p.Q127Q	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.Q33Q|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_5'UTR	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	127	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CAGACTTACAGGTAACTGATT	0.383													3	14					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54913077	54913077	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:54913077G>A	uc003dhf.2	+	19	1791	c.1743G>A	c.(1741-1743)GGG>GGA	p.G581G	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.G487G|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.G315G|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	581	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GAAAGACGGGGAAGTTTTCCA	0.368													5	20					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54952727	54952727	+	Missense_Mutation	SNP	C	T	T	rs11541701	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:54952727C>T	uc003dhl.2	-	3	931	c.797G>A	c.(796-798)CGA>CAA	p.R266Q	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	266	Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CAAGAGTTCTCGCTCCCCCGC	0.617													21	26					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468585	56468585	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:56468585G>A	uc003dhr.1	-	2	707	c.451C>T	c.(451-453)CAG>TAG	p.Q151*		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	151	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		AGCTGGGCCTGAAGATCTAAC	0.498													80	163					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58110173	58110173	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:58110173G>A	uc003djj.2	+	22	4004	c.3839G>A	c.(3838-3840)TGC>TAC	p.C1280Y	FLNB_uc010hne.2_Missense_Mutation_p.C1280Y|FLNB_uc003djk.2_Missense_Mutation_p.C1280Y|FLNB_uc010hnf.2_Missense_Mutation_p.C1280Y|FLNB_uc003djl.2_Missense_Mutation_p.C1111Y|FLNB_uc003djm.2_Missense_Mutation_p.C1111Y	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1280	Filamin 11.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TCCACCGAGTGCTTTGTCACA	0.592													11	43					0	0	1	0	0
FHIT	2272	broad.mit.edu	37	3	59999827	59999827	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:59999827G>A	uc003dkx.3	-	6	526	c.155C>T	c.(154-156)CCT>CTT	p.P52L	FHIT_uc003dky.2_Missense_Mutation_p.P52L|FHIT_uc010hnn.1_Missense_Mutation_p.P52L	NM_002012	NP_002003	P49789	FHIT_HUMAN	fragile histidine triad gene	52	HIT.				nucleotide metabolic process		bis(5'-adenosyl)-triphosphatase activity|protein binding				0		all_cancers(2;2.37e-314)|all_epithelial(2;5.17e-286)|Colorectal(2;1.24e-68)|all_lung(2;1.31e-45)|Lung NSC(2;1.79e-44)|all_hematologic(2;1.59e-23)|Renal(2;1.03e-13)|Breast(2;1.06e-10)|Esophageal squamous(2;6.31e-09)|Melanoma(2;1.83e-07)|Acute lymphoblastic leukemia(2;5.46e-05)|all_neural(2;0.00118)|Medulloblastoma(2;0.00263)|Hepatocellular(2;0.0245)|Ovarian(2;0.0408)		UCEC - Uterine corpus endometrioid carcinoma (45;0.0887)|Epithelial(1;9.28e-70)|all cancers(1;3.07e-60)|Colorectal(1;2.33e-53)|STAD - Stomach adenocarcinoma(1;7.22e-48)|COAD - Colon adenocarcinoma(3;1.05e-44)|READ - Rectum adenocarcinoma(3;2.41e-08)|KIRC - Kidney renal clear cell carcinoma(10;0.000109)|Kidney(10;0.000125)|Lung(1;0.000161)|LUSC - Lung squamous cell carcinoma(1;0.000742)|OV - Ovarian serous cystadenocarcinoma(275;0.00372)|BRCA - Breast invasive adenocarcinoma(55;0.00448)		CACTTCATCAGGACGCAGGTC	0.547			T	HMGA2	pleomorphic salivary gland adenoma				Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				10	51					0	0	1	0	0
SYNPR	132204	broad.mit.edu	37	3	63542262	63542262	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:63542262G>A	uc003dlq.2	+	3	562	c.193G>A	c.(193-195)GAA>AAA	p.E65K	SYNPR_uc003dlp.2_Missense_Mutation_p.E85K|SYNPR_uc011bfk.1_RNA|SYNPR_uc011bfl.1_Intron|SYNPR_uc010hnt.2_Missense_Mutation_p.E74K|SYNPR_uc011bfm.1_Intron	NM_144642	NP_653243	Q8TBG9	SYNPR_HUMAN	synaptoporin isoform 2	65	MARVEL.|Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	transporter activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000918)|KIRC - Kidney renal clear cell carcinoma(15;0.0658)|Kidney(15;0.0904)		CGAGGGAAAGGAACGGCAGAA	0.483													10	30					0	0	1	0	0
THOC7	80145	broad.mit.edu	37	3	63823651	63823651	+	Splice_Site	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:63823651C>T	uc003dlt.3	-	4	483	c.352_splice	c.e4+1	p.E118_splice	C3orf49_uc003dls.3_Intron|THOC7_uc003dlu.3_Splice_Site_p.E55_splice	NM_025075	NP_079351	Q6I9Y2	THOC7_HUMAN	Ngg1 interacting factor 3 like 1 binding protein						intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	cytoplasm|THO complex part of transcription export complex	protein binding|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.000439)|Kidney(15;0.00194)|KIRC - Kidney renal clear cell carcinoma(15;0.00218)		AAAACCCTTACCTTGGCGATT	0.358													25	63					0	0	1	0	0
ARL6IP5	10550	broad.mit.edu	37	3	69151138	69151138	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:69151138A>T	uc003dnr.2	+	2	434	c.325A>T	c.(325-327)AGC>TGC	p.S109C		NM_006407	NP_006398	O75915	PRAF3_HUMAN	ADP-ribosylation-like factor 6 interacting	109	Helical; (Potential).				L-glutamate transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.78e-05)|Epithelial(33;0.000818)|LUSC - Lung squamous cell carcinoma(21;0.0118)|Lung(16;0.0189)|KIRC - Kidney renal clear cell carcinoma(39;0.203)|Kidney(39;0.238)		CATGTTGGCGAGCTATTTCCT	0.468													18	55					0	0	1	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433255	73433255	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:73433255G>A	uc003dpl.1	-	10	2558	c.2462C>T	c.(2461-2463)ACC>ATC	p.T821I	PDZRN3_uc011bgh.1_Missense_Mutation_p.T478I|PDZRN3_uc010hoe.1_Missense_Mutation_p.T519I|PDZRN3_uc011bgf.1_Missense_Mutation_p.T538I|PDZRN3_uc011bgg.1_Missense_Mutation_p.T541I	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	821							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CGGGCTATAGGTAGGGGTGCC	0.657													20	59					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74313579	74313579	+	Silent	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:74313579C>G	uc003dpm.1	-	22	3140	c.3060G>C	c.(3058-3060)CTG>CTC	p.L1020L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	1020					cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CAATTAAGAACAGTACTATAG	0.353													3	27					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77595570	77595570	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:77595570G>A	uc003dpy.3	+	7	1659	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E	ROBO2_uc003dpz.2_Missense_Mutation_p.G343E|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G343E	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	339	Ig-like C2-type 4.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GAAACTAAAGGAAACCCACAG	0.453													57	172					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77666856	77666856	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:77666856A>G	uc003dpy.3	+	22	4129	c.3486A>G	c.(3484-3486)CAA>CAG	p.Q1162Q	ROBO2_uc003dpz.2_Silent_p.Q1166Q|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.Q1166Q|ROBO2_uc003dqa.2_Silent_p.Q289Q	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1162	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AAGAGATGCAACCCATGCTGC	0.483													15	49					0	0	1	0	0
HTR1F	3355	broad.mit.edu	37	3	88040382	88040382	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:88040382G>A	uc003dqr.2	+	2	641	c.483G>A	c.(481-483)TGG>TGA	p.W161*		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	161	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	CTCTATTCTGGAGGCACCAAG	0.418													16	21					0	0	1	0	0
PROS1	5627	broad.mit.edu	37	3	93598148	93598148	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:93598148G>A	uc003drb.3	-	13	1844	c.1503C>T	c.(1501-1503)TCC>TCT	p.S501S	PROS1_uc010hoo.2_Silent_p.S370S|PROS1_uc003dqz.3_Silent_p.S370S	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	501	Laminin G-like 2.		S -> P (variant Heerlen; could be associated with PROS1D).|S -> A (in PROS1D).		leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CCTCAGCACTGGATACATTAT	0.398													26	91					0	0	1	0	0
LOC255025	255025	broad.mit.edu	37	3	94890835	94890835	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:94890835G>A	uc003drn.2	+	3		c.299G>A								Homo sapiens hypothetical protein LOC255025, mRNA (cDNA clone IMAGE:5267157).												0						ATGGGGGGTGGAAAACAGCCT	0.478													9	14					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983449	97983449	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:97983449G>A	uc003dsi.1	+	1	321	c.321G>A	c.(319-321)ATG>ATA	p.M107I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						AGAGTAAGATGATATCTCTCT	0.398													32	65					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002026	98002026	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:98002026C>T	uc003dsj.1	+	1	295	c.295C>T	c.(295-297)CTG>TTG	p.L99L		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GATGATATCTCTGTCTGAATG	0.373													34	105					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002221	98002221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:98002221C>T	uc003dsj.1	+	1	490	c.490C>T	c.(490-492)CAT>TAT	p.H164Y		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	164	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TGCCTTAATTCATGAAGTCCT	0.348													17	46					0	0	1	0	0
OR5K4	403278	broad.mit.edu	37	3	98072975	98072975	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:98072975C>T	uc011bgv.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AGAATTATTTCCCTGTATGAA	0.433													64	175					0	0	1	0	0
C3orf26	84319	broad.mit.edu	37	3	99886606	99886606	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:99886606G>A	uc003dtl.2	+	6	583	c.440G>A	c.(439-441)AGG>AAG	p.R147K		NM_032359	NP_115735	Q9BQ75	CC026_HUMAN	hypothetical protein LOC84319	147							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(1)	1						GTAAAACTTAGGAAGAACCAC	0.448													39	92					0	0	1	0	0
LNP1	348801	broad.mit.edu	37	3	100174769	100174769	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:100174769A>G	uc003dtx.3	+	4	1816	c.536A>G	c.(535-537)TAA>TGA	p.*179*	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	179											0						GGGCCTGAATAATACTCTGCT	0.463													29	49					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100515259	100515259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:100515259C>T	uc003dun.2	-	21	1886	c.1801G>A	c.(1801-1803)GAA>AAA	p.E601K	ABI3BP_uc003duj.2_Missense_Mutation_p.E156K|ABI3BP_uc003duk.2_Missense_Mutation_p.E285K|ABI3BP_uc003dul.2_Missense_Mutation_p.E406K|ABI3BP_uc011bhd.1_Missense_Mutation_p.E555K|ABI3BP_uc003dum.2_Intron	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	601	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TTACCAGGTTCGCTCTGAGAG	0.318													11	28					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108476028	108476028	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:108476028C>T	uc003dxh.2	-	1	103	c.5G>A	c.(4-6)GGG>GAG	p.G2E		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	2					cell proliferation	extracellular region	hormone activity			skin(1)	1						AGAGGACGGCCCCATCCTGTA	0.522													20	40					0	0	1	0	0
GUCA1C	9626	broad.mit.edu	37	3	108627031	108627031	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:108627031G>A	uc003dxj.2	-	4	536	c.468C>T	c.(466-468)ATC>ATT	p.I156I	GUCA1C_uc003dxk.2_Nonsense_Mutation_p.Q170*	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	156	EF-hand 4.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						CCATGCCATTGATAAATTCTT	0.393													17	12					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111936354	111936354	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:111936354G>A	uc003dyu.2	-	15	1947	c.1725C>T	c.(1723-1725)ACC>ACT	p.T575T	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Silent_p.T527T	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	575					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TTCTAGCAAAGGTAACTGTTT	0.303													13	46					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377862	113377862	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:113377862G>A	uc003eam.2	-	7	3078	c.2667C>T	c.(2665-2667)TCC>TCT	p.S889S	KIAA2018_uc003eal.2_Silent_p.S833S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	889	Ser-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						AGGGTGGGCTGGACTTTTCTG	0.418													30	86					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113380127	113380127	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:113380127G>A	uc003eam.2	-	7	813	c.402C>T	c.(400-402)GTC>GTT	p.V134V	KIAA2018_uc003eal.2_Silent_p.V78V	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	134					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TAACAACAGAGACCTTTGAGT	0.383													25	58					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120876392	120876392	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:120876392C>T	uc003eec.3	+	9	935	c.795C>T	c.(793-795)TTC>TTT	p.F265F	STXBP5L_uc011bji.1_Silent_p.F265F	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	265	WD 5.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCAAACAGTTCATGTGCAGCC	0.378													14	35					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120959299	120959300	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:120959299_120959300AG>CT	uc003eec.3	+	14	1485_1486	c.1345_1346AG>CT	c.(1345-1347)AGT>CTT	p.S449L	STXBP5L_uc011bji.1_Missense_Mutation_p.S449L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	449	WD 8.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GTGGCCAATCAGTGGAGGAGCT	0.302													9	23					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122414425	122414425	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:122414425C>T	uc003efq.3	+	5	810	c.751C>T	c.(751-753)CCC>TCC	p.P251S	PARP14_uc010hrk.2_RNA	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CTTTGAAAATCCCTATAATGG	0.378													4	14					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124211629	124211629	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:124211629C>T	uc003ehg.2	+	32	4853	c.4726C>T	c.(4726-4728)CGA>TGA	p.R1576*	KALRN_uc010hrv.1_Nonsense_Mutation_p.R1567*|KALRN_uc003ehf.1_Nonsense_Mutation_p.R1576*|KALRN_uc011bjy.1_Nonsense_Mutation_p.R1567*	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1576	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CAAGAACATTCGAGAAGTGAT	0.463													30	65					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124351299	124351299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:124351299G>A	uc003ehg.2	+	35	5336	c.5209G>A	c.(5209-5211)GGC>AGC	p.G1737S	KALRN_uc003ehi.2_Missense_Mutation_p.G110S|KALRN_uc003ehk.2_Missense_Mutation_p.G40S|KALRN_uc003ehj.2_Missense_Mutation_p.G40S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1737					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CGAGAATGGAGGCAAGTCCGA	0.577													21	58					0	0	1	0	0
HEG1	57493	broad.mit.edu	37	3	124696789	124696789	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:124696789G>A	uc003ehs.3	-	15	3803	c.3735C>T	c.(3733-3735)CCC>CCT	p.P1245P	HEG1_uc003ehr.3_Silent_p.P99P|HEG1_uc011bke.1_Silent_p.P1345P	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	1245	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						TAAGCTGATAGGCTAAACGTA	0.488													5	7					0	0	1	0	0
CCDC37	348807	broad.mit.edu	37	3	126126092	126126092	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:126126092G>A	uc003eiu.1	+	3	226	c.127G>A	c.(127-129)GAA>AAA	p.E43K	CCDC37_uc010hsg.1_Missense_Mutation_p.E43K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	43										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		AAGAAAAAACGAAGGTAACCT	0.507													4	22					0	0	1	0	0
TXNRD3IT1	645840	broad.mit.edu	37	3	126291310	126291310	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:126291310C>T	uc003ejc.2	-	3	556	c.77G>A	c.(76-78)AGG>AAG	p.R26K		NM_001039783	NP_001034872	Q6F5E7	TR3N_HUMAN	thioredoxin reductase 3 intronic transcript 1	26											0						CAATCGTGCCCTCACAGGCTC	0.547													10	35					0	0	1	0	0
CHCHD6	84303	broad.mit.edu	37	3	126452010	126452010	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:126452010C>T	uc003ejf.1	+	4	394	c.356C>T	c.(355-357)TCC>TTC	p.S119F	CHCHD6_uc010hsj.1_Missense_Mutation_p.S119F	NM_032343	NP_115719	Q9BRQ6	CHCH6_HUMAN	coiled-coil-helix-coiled-coil-helix domain	119											0						TCCAAGGCATCCCTGCCCACG	0.572													11	29					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126915906	126915906	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:126915906C>T	uc003eji.1	+	2	618	c.378C>T	c.(376-378)AAC>AAT	p.N126N						RecName: Full=Putative uncharacterized protein C3orf56;																		TGGCCCCCAACCTATTTCCTT	0.607													49	127					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127646650	127646650	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:127646650G>A	uc010hsr.2	+	2	1117	c.1114G>A	c.(1114-1116)GCT>ACT	p.A372T	KBTBD12_uc003ejy.3_5'UTR|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Silent_p.Q13Q|KBTBD12_uc003ejz.2_Missense_Mutation_p.A372T	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	372										ovary(1)	1						GTTATGCACAGCTGAATTTCG	0.368													44	136					0	0	1	0	0
RPN1	6184	broad.mit.edu	37	3	128344834	128344834	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:128344834G>A	uc003ekr.1	-	7	1234	c.1158C>T	c.(1156-1158)CCC>CCT	p.P386P	RPN1_uc011bkq.1_Silent_p.P214P	NM_002950	NP_002941	P04843	RPN1_HUMAN	ribophorin I precursor	386	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|melanosome|oligosaccharyltransferase complex|rough microsome	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(114;0.189)		TGATTTCATAGGGACTATCAA	0.433			T	EVI1	AML								15	37					0	0	1	0	0
ACAD9	28976	broad.mit.edu	37	3	128623306	128623306	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:128623306A>G	uc003ela.3	+	11	1309	c.1107A>G	c.(1105-1107)CAA>CAG	p.Q369Q	ACAD9_uc010hsw.1_Silent_p.Q246Q|ACAD9_uc011bks.1_Silent_p.Q246Q|ACAD9_uc003elb.2_Silent_p.Q246Q|ACAD9_uc003eld.1_RNA|ACAD9_uc003ele.2_Silent_p.Q21Q	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	369						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						TGCTGGACCAACCTGGCTTTC	0.542													8	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129137115	129137115	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:129137115G>A	uc003emg.2	-	3	826	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_207307	NP_997190			hypothetical protein LOC90288																		CAGCCGCGATGAACTCCTCCC	0.557													8	19					0	0	1	0	0
UBA5	79876	broad.mit.edu	37	3	132389843	132389843	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:132389843C>T	uc003epa.3	+	6	771	c.529C>T	c.(529-531)CTA>TTA	p.L177L	NPHP3_uc003eoz.1_Intron|UBA5_uc010htr.2_Silent_p.L121L|UBA5_uc010htt.2_Silent_p.L177L|UBA5_uc003epb.3_Silent_p.L121L	NM_024818	NP_079094	Q9GZZ9	UBA5_HUMAN	ubiquitin-activating enzyme 5 isoform 1	177					protein ufmylation	aggresome|cytoplasm|cytoplasm|nucleus	ATP binding|cofactor binding|metal ion binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding|UFM1 activating enzyme activity			kidney(1)	1						ACCTGTTGATCTAGTTCTTAG	0.333													21	45					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099203	133099203	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:133099203C>T	uc003eph.2	+	4	922	c.648C>T	c.(646-648)ATC>ATT	p.I216I	TMEM108_uc003epi.2_Silent_p.I216I|TMEM108_uc003epj.1_Silent_p.I216I|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Silent_p.I167I	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	216	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						TGGGGAAAATCTTTCAGATCT	0.602													17	39					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099414	133099414	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:133099414G>A	uc003eph.2	+	4	1133	c.859G>A	c.(859-861)GGT>AGT	p.G287S	TMEM108_uc003epi.2_Missense_Mutation_p.G287S|TMEM108_uc003epj.1_Missense_Mutation_p.G287S|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Missense_Mutation_p.G238S	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	287	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						AGCCCAGGGGGGTGGTTCTAC	0.652													10	25					0	0	1	0	0
PCCB	5096	broad.mit.edu	37	3	136019952	136019952	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:136019952C>T	uc003eqy.1	+	9	1016	c.965C>T	c.(964-966)TCT>TTT	p.S322F	PCCB_uc003eqz.1_Missense_Mutation_p.S322F|PCCB_uc011bmc.1_Missense_Mutation_p.S342F|PCCB_uc011bmd.1_Missense_Mutation_p.S239F	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	322	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	ATCATACACTCTGTAAGTGCC	0.488													8	29					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738942	138738942	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:138738942G>A	uc003esy.1	-	1	827	c.562C>T	c.(562-564)CCC>TCC	p.P188S		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	188	Pro-rich.									breast(1)	1						TCCCGGTAGGGGATGAACATA	0.637													12	51					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140401350	140401350	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:140401350G>A	uc003eto.1	+	2	579	c.388G>A	c.(388-390)GAA>AAA	p.E130K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	130						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CCAGGTGGATGAAGTAAAGTC	0.567													21	43					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142178084	142178084	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:142178084G>A	uc003eux.3	-	43	7456	c.7334C>T	c.(7333-7335)CCT>CTT	p.P2445L	ATR_uc003euy.1_Missense_Mutation_p.P331L	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2445	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGTAGGATCAGGGAATGTTCT	0.338								Other_conserved_DNA_damage_response_genes					7	21					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142281234	142281234	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:142281234A>T	uc003eux.3	-	4	1132	c.1010T>A	c.(1009-1011)CTT>CAT	p.L337H		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	337					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						ATCAGACTTAAGCCGCATGAG	0.403								Other_conserved_DNA_damage_response_genes					19	47					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154802038	154802038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:154802038G>A	uc010hvr.1	+	2	293	c.82G>A	c.(82-84)GAG>AAG	p.E28K	MME_uc003fab.1_Missense_Mutation_p.E28K|MME_uc003fac.1_Missense_Mutation_p.E28K|MME_uc003fad.1_Missense_Mutation_p.E28K|MME_uc003fae.1_Missense_Mutation_p.E28K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	28	Cytoplasmic (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GACTCCACTGGAGATCAGCCT	0.468													24	73					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155206484	155206484	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:155206484C>T	uc011bok.1	-	19	2745	c.2468G>A	c.(2467-2469)GGA>GAA	p.G823E	PLCH1_uc011boj.1_Missense_Mutation_p.G823E|PLCH1_uc011bol.1_Missense_Mutation_p.G805E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	823	C2.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGTTCTTTGTCCAACAAAGTC	0.443													13	22					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155222393	155222393	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:155222393C>T	uc011bok.1	-	12	1896	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E	PLCH1_uc011boj.1_Missense_Mutation_p.G540E|PLCH1_uc011bol.1_Missense_Mutation_p.G522E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	540					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGATTTCTTTCCACTTTCCTT	0.308													17	57					0	0	1	0	0
IFT80	57560	broad.mit.edu	37	3	159998559	159998559	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:159998559G>A	uc011boy.1	-	15	1993	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	IFT80_uc003fda.2_RNA|IFT80_uc003fdb.1_Silent_p.I383I|IFT80_uc003fdd.1_Silent_p.I203I|IFT80_uc003fde.1_Silent_p.I383I	NM_020800	NP_065851	Q9P2H3	IFT80_HUMAN	WD repeat domain 56	520	WD 7.					cilium axoneme|microtubule basal body				ovary(1)	1			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GTCCACAAAGGATATTGCATG	0.318													9	26					0	0	1	0	0
PPM1L	151742	broad.mit.edu	37	3	160474331	160474331	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:160474331G>A	uc003fdr.2	+	1	336	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	79	Cytoplasmic (Potential).				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			TGATGTGCTCGAGGCCGAGTT	0.582													12	24					0	0	1	0	0
PPM1L	151742	broad.mit.edu	37	3	160474333	160474333	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:160474333G>A	uc003fdr.2	+	1	338	c.237G>A	c.(235-237)GAG>GAA	p.E79E		NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	79	Cytoplasmic (Potential).				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			ATGTGCTCGAGGCCGAGTTTT	0.582													12	24					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164716414	164716414	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:164716414G>A	uc003fei.2	-	38	4516	c.4454C>T	c.(4453-4455)TCC>TTC	p.S1485F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1485	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AGGATACGTGGAACGAGAAAT	0.393										HNSCC(35;0.089)			16	50					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167189477	167189477	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:167189477G>A	uc003fer.1	-	1	204	c.146C>T	c.(145-147)CCC>CTC	p.P49L	SERPINI2_uc003fes.1_Missense_Mutation_p.P59L|SERPINI2_uc003fet.1_Missense_Mutation_p.P49L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	49					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TATTCCAAGGGGTGAAAATAT	0.393													21	64					0	0	1	0	0
LRRC31	79782	broad.mit.edu	37	3	169572730	169572730	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:169572730C>T	uc003fgc.1	-	6	939	c.862G>A	c.(862-864)GAT>AAT	p.D288N	LRRC31_uc010hwp.1_Missense_Mutation_p.D232N	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	288	LRR 3.									ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			CAGGAAAGATCTAATTTCCTC	0.373													20	44					0	0	1	0	0
GHSR	2693	broad.mit.edu	37	3	172165900	172165900	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:172165900G>A	uc003fib.1	-	1	304	c.304C>T	c.(304-306)CGC>TGC	p.R102C	GHSR_uc011bpv.1_Missense_Mutation_p.R102C	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	102	Extracellular (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TGCCAGAGGCGAACGAGGTCC	0.612													12	32					0	0	1	0	0
TNFSF10	8743	broad.mit.edu	37	3	172241118	172241118	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:172241118G>A	uc003fid.2	-	1	152	c.57C>T	c.(55-57)ATC>ATT	p.I19I	TNFSF10_uc003fie.2_Silent_p.I19I|TNFSF10_uc010hwu.1_RNA	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	19	Helical; Signal-anchor for type II membrane protein; (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TGAAGATCACGATCAGCACGC	0.562													23	46					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172835398	172835398	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:172835398C>T	uc003fin.3	-	2	282	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	42					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TGTGACATTTCCAGGATGTTA	0.378													68	160					0	0	1	0	0
KCNMB2	10242	broad.mit.edu	37	3	178546080	178546080	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:178546080C>T	uc003fjd.2	+	4	685	c.342C>T	c.(340-342)CTC>CTT	p.L114L	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Silent_p.L114L|KCNMB2_uc003fjf.2_Silent_p.L114L|KCNMB2_uc011bqa.1_Intron|KCNMB2_uc011bqb.1_Intron	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	114	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			ACCCCTGCCTCCAGGTGTACG	0.478													18	50					0	0	1	0	0
PARL	55486	broad.mit.edu	37	3	183547402	183547402	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:183547402C>T	uc003fmd.2	-	10	1183	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	PARL_uc003fme.2_Missense_Mutation_p.G325E	NM_018622	NP_061092	Q9H300	PARL_HUMAN	presenilin associated, rhomboid-like isoform 1	375	Mitochondrial intermembrane (Potential).				proteolysis	integral to membrane|mitochondrial inner membrane|nucleus	serine-type endopeptidase activity				0	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.21e-41)|Epithelial(37;1.34e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AGAGCCACCTCCTTTTTTGGG	0.493													49	152					0	0	1	0	0
ALG3	10195	broad.mit.edu	37	3	183962449	183962449	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:183962449G>A	uc003fne.2	-	5	697	c.666C>T	c.(664-666)CTC>CTT	p.L222L	ALG3_uc011brc.1_Silent_p.L187L|ALG3_uc011brd.1_Silent_p.L166L|ALG3_uc011bre.1_Silent_p.L174L|ALG3_uc003fnf.1_Silent_p.L182L	NM_005787	NP_005778	Q92685	ALG3_HUMAN	alpha-1,3-mannosyltransferase ALG3 isoform a	222	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity				0	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACTGTGTGAGGAGAAGAAACA	0.567													9	16					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	186002490	186002490	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:186002490G>A	uc003fqa.2	-	7	1090	c.553C>T	c.(553-555)CGC>TGC	p.R185C	DGKG_uc003fqb.2_Missense_Mutation_p.R185C|DGKG_uc003fqc.2_Missense_Mutation_p.R185C|DGKG_uc011brx.1_Missense_Mutation_p.R185C	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	185	EF-hand 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	TCATAGAGGCGAAACATGACT	0.488													16	34					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189526126	189526126	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:189526126C>T	uc003fry.2	+	4	479	c.390C>T	c.(388-390)TCC>TCT	p.S130S	TP63_uc003frx.2_Silent_p.S130S|TP63_uc003frz.2_Silent_p.S130S|TP63_uc010hzc.1_Silent_p.S130S|TP63_uc003fsa.2_Silent_p.S36S|TP63_uc003fsb.2_Silent_p.S36S|TP63_uc003fsc.2_Silent_p.S36S|TP63_uc003fsd.2_Silent_p.S36S|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Silent_p.S11S	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	130					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCTCCTCGTCCACCAGTCCCT	0.602									Hay-Wells_syndrome	HNSCC(45;0.13)			20	45					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189582106	189582106	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:189582106G>A	uc003fry.2	+	5	754	c.665G>A	c.(664-666)GGA>GAA	p.G222E	TP63_uc003frx.2_Missense_Mutation_p.G222E|TP63_uc003frz.2_Missense_Mutation_p.G222E|TP63_uc010hzc.1_Missense_Mutation_p.G222E|TP63_uc003fsa.2_Missense_Mutation_p.G128E|TP63_uc003fsb.2_Missense_Mutation_p.G128E|TP63_uc003fsc.2_Missense_Mutation_p.G128E|TP63_uc003fsd.2_Missense_Mutation_p.G128E|TP63_uc010hzd.1_Missense_Mutation_p.G43E|TP63_uc003fse.1_Missense_Mutation_p.G103E	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	222					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCTCCTCAGGGAGCTGTTATC	0.527									Hay-Wells_syndrome	HNSCC(45;0.13)			26	99					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189585721	189585721	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:189585721G>A	uc003fry.2	+	7	1071	c.982G>A	c.(982-984)GAA>AAA	p.E328K	TP63_uc003frx.2_Missense_Mutation_p.E328K|TP63_uc003frz.2_Missense_Mutation_p.E328K|TP63_uc010hzc.1_Missense_Mutation_p.E328K|TP63_uc003fsa.2_Missense_Mutation_p.E234K|TP63_uc003fsb.2_Missense_Mutation_p.E234K|TP63_uc003fsc.2_Missense_Mutation_p.E234K|TP63_uc003fsd.2_Missense_Mutation_p.E234K|TP63_uc010hzd.1_Missense_Mutation_p.E149K|TP63_uc003fse.1_Missense_Mutation_p.E209K	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	328					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.E328*(1)		skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGTTACTCTGGAAACCAGAGA	0.408									Hay-Wells_syndrome	HNSCC(45;0.13)			8	17					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194062658	194062658	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:194062658G>A	uc003fts.2	-	2	864	c.774C>T	c.(772-774)CTC>CTT	p.L258L		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	258	LRR 7.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CAAAGATGGAGAGCGGCAGGT	0.607													15	50					0	0	1	0	0
LRRC15	131578	broad.mit.edu	37	3	194080534	194080534	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:194080534C>T	uc003ftu.2	-	2	1325	c.1239G>A	c.(1237-1239)GGG>GGA	p.G413G	LRRC15_uc003ftt.2_Silent_p.G419G	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	413	Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CACACAGTTTCCCCAGGTGAT	0.567													4	26					0	0	1	0	0
LRRC33	375387	broad.mit.edu	37	3	196388044	196388044	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr3:196388044C>T	uc003fwv.2	+	3	1634	c.1530C>T	c.(1528-1530)GCC>GCT	p.A510A		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	510	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		AGGATGTTGCCCCCATGTTAC	0.557													35	81					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	648636	648636	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:648636C>T	uc003gap.2	+	6	1004	c.951C>T	c.(949-951)ATC>ATT	p.I317I	PDE6B_uc003gao.3_Silent_p.I317I|PDE6B_uc011buy.1_Silent_p.I38I|uc003gaq.1_Intron	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	317	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						ACAAAGTGATCGACTACGTCC	0.522													15	67					0	0	1	0	0
TMEM175	84286	broad.mit.edu	37	4	952241	952241	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:952241G>A	uc003gbq.2	+	11	1570	c.1472G>A	c.(1471-1473)GGC>GAC	p.G491D	TMEM175_uc003gbr.2_Missense_Mutation_p.G409D|TMEM175_uc003gbu.2_Missense_Mutation_p.G409D|TMEM175_uc003gbs.2_Missense_Mutation_p.G374D|TMEM175_uc003gbt.2_Missense_Mutation_p.G374D|TMEM175_uc003gbv.2_Missense_Mutation_p.G374D|TMEM175_uc010ibm.2_Missense_Mutation_p.G307D	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	491						integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GCCCCCACGGGCCAGGACGAC	0.731													4	6					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3146924	3146924	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:3146924G>A	uc011bvq.1	+	25	3263	c.3118G>A	c.(3118-3120)GTT>ATT	p.V1040I		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1038					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TGCCTTCCCAGTTTGCATTTG	0.358													41	90					0	0	1	0	0
KIAA0232	9778	broad.mit.edu	37	4	6865515	6865515	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:6865515C>T	uc003gjr.3	+	7	3869	c.3406C>T	c.(3406-3408)CCC>TCC	p.P1136S	KIAA0232_uc003gjq.3_Missense_Mutation_p.P1136S	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	1136							ATP binding			ovary(2)	2						AGCAAATATTCCCATTCCTTC	0.438													12	37					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9909924	9909924	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:9909924G>A	uc003gmc.2	-	8	1109	c.1048C>T	c.(1048-1050)CCG>TCG	p.P350S	SLC2A9_uc003gmd.2_Missense_Mutation_p.P321S	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	350	Extracellular (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						ATCTTTGCCGGAGGGATCCCA	0.473													5	41					0	0	1	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400899	11400899	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:11400899G>A	uc003gmq.2	-	2	1054	c.731C>T	c.(730-732)TCG>TTG	p.S244L		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	244						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GTAGAAGTTCGAAGCATTGAT	0.572													7	35					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20493404	20493404	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:20493404C>T	uc003gpr.1	+	9	1000	c.796C>T	c.(796-798)CCT>TCT	p.P266S	SLIT2_uc003gps.1_Missense_Mutation_p.P266S	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	266	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ATTTATGGCTCCTTCTTGTAG	0.408													20	69					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20618811	20618811	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:20618811C>T	uc003gpr.1	+	35	4330	c.4126C>T	c.(4126-4128)CTT>TTT	p.L1376F	SLIT2_uc003gps.1_Missense_Mutation_p.L1368F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1376					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGACCCTTGCCTTGGAAATAA	0.517													21	46					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815730	23815730	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:23815730C>T	uc003gqs.2	-	8	1496	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	459					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				CAGCTCGGCTCGGATTTCCTG	0.502													23	41					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25821477	25821477	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:25821477G>A	uc003gru.3	-	8	1528	c.1376C>T	c.(1375-1377)TCT>TTT	p.S459F		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	459						integral to membrane	binding				0						TGCATACACAGATACTATTTC	0.418													5	16					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36069714	36069714	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:36069714G>A	uc003gsq.1	-	33	5268	c.4930C>T	c.(4930-4932)CCA>TCA	p.P1644S	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1644					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGCCCAAGTGGGGCTTCAGGC	0.498													35	97					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36163120	36163120	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:36163120C>T	uc003gsq.1	-	12	2564	c.2226G>A	c.(2224-2226)ATG>ATA	p.M742I	ARAP2_uc003gsr.1_Missense_Mutation_p.M742I	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	742	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGCTAGCATCCATTTTTAGAC	0.383													6	40					0	0	1	0	0
PGM2	55276	broad.mit.edu	37	4	37848881	37848882	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:37848881_37848882GG>AA	uc011byb.1	+	10	1320_1321	c.1247_1248GG>AA	c.(1246-1248)GGG>GAA	p.G416E	PGM2_uc011bya.1_Missense_Mutation_p.G277E|PGM2_uc011byc.1_Missense_Mutation_p.G256E	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	416					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						ATAGACCAGGGGAAAACTGTTT	0.381													6	27					0	0	1	0	0
KLF3	51274	broad.mit.edu	37	4	38682284	38682284	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:38682284C>T	uc003gth.3	+	2	370	c.38C>T	c.(37-39)GCC>GTC	p.A13V	KLF3_uc003gtg.2_Missense_Mutation_p.A13V	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	13	Repressor domain.|Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						AAGCAAGAGGCCATGGACCCT	0.403													30	81					0	0	1	0	0
N4BP2	55728	broad.mit.edu	37	4	40099190	40099190	+	Splice_Site	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:40099190G>A	uc003guy.3	+	3	567	c.229_splice	c.e3+1	p.V77_splice	N4BP2_uc010ifq.2_Splice_Site	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2							cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GATTTCAAAGGTGAGAAAAAG	0.323													6	17					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40438507	40438507	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:40438507C>T	uc003gvc.2	-	5	1991	c.1281G>A	c.(1279-1281)CCG>CCA	p.P427P	RBM47_uc003gvd.2_Intron|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.P389P	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	427						nucleus	nucleotide binding|RNA binding			breast(3)	3						TTTCCAAATTCGGCACCAGTT	0.478													35	93					0	0	1	0	0
PHOX2B	8929	broad.mit.edu	37	4	41748208	41748208	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:41748208G>A	uc003gwf.3	-	3	921	c.561C>T	c.(559-561)GCC>GCT	p.A187A		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	187					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						CAGTGCTCTTGGCCTCTTTGC	0.592			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				13	40					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46252465	46252465	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:46252465C>T	uc003gxc.3	-	9	1889	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	GABRA2_uc010igc.2_Missense_Mutation_p.E406K|GABRA2_uc011bzc.1_Missense_Mutation_p.E411K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	406	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCTTTGCTTCAGCTGGCTTG	0.408													59	155					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47427753	47427753	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:47427753G>A	uc003gxh.2	+	9	1517	c.1143G>A	c.(1141-1143)TCG>TCA	p.S381S	GABRB1_uc011bze.1_Silent_p.S311S	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	381	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CGAGTGGCTCGGAAGTGCTCA	0.597													20	61					0	0	1	0	0
TXK	7294	broad.mit.edu	37	4	48097181	48097181	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:48097181G>A	uc003gxx.3	-	7	646	c.560C>T	c.(559-561)TCC>TTC	p.S187F	TXK_uc003gxy.1_Missense_Mutation_p.S187F	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	187	SH2.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CATAAATACGGAAATTGTGTA	0.333													12	24					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48577174	48577174	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:48577174G>A	uc003gyh.1	-	25	3411	c.2806C>T	c.(2806-2808)CTT>TTT	p.L936F	FRYL_uc003gyk.2_Missense_Mutation_p.L936F	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	936					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CCTAGAACAAGGGATTCTGTG	0.393													16	44					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48605326	48605326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:48605326G>A	uc003gyh.1	-	12	1519	c.914C>T	c.(913-915)TCG>TTG	p.S305L	FRYL_uc003gyk.2_Missense_Mutation_p.S305L	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	305					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CTTCTTTCTCGAGCTCAGTTC	0.289													14	39					0	0	1	0	0
OCIAD1	54940	broad.mit.edu	37	4	48852045	48852045	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:48852045C>T	uc003gyo.2	+	6	580	c.323C>T	c.(322-324)TCC>TTC	p.S108F	OCIAD1_uc011bzk.1_RNA|OCIAD1_uc003gyr.2_Missense_Mutation_p.S108F|OCIAD1_uc003gyp.2_Missense_Mutation_p.S108F|OCIAD1_uc003gys.2_Missense_Mutation_p.S108F|OCIAD1_uc003gyq.2_Missense_Mutation_p.S108F|OCIAD1_uc010igk.2_Missense_Mutation_p.S113F	NM_017830	NP_060300	Q9NX40	OCAD1_HUMAN	OCIA domain containing 1 isoform 1	108	OCIA.					endosome	protein binding				0						CTTGAAAATTCCCCCCTTGGA	0.363													14	45					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69101961	69101961	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:69101961C>T	uc003hdw.3	-	3	284	c.148G>A	c.(148-150)GAT>AAT	p.D50N		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	50	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATATGAAAATCACCTTGATAA	0.328													5	10					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535652	69535652	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:69535652C>T	uc011cal.1	-	1	723	c.685G>A	c.(685-687)GAT>AAT	p.D229N		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	229					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TTCTTCAGATCATAAATTTGA	0.323													45	99					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70078427	70078427	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:70078427G>A	uc003heh.2	-	2	743	c.734C>T	c.(733-735)ACC>ATC	p.T245I	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	245					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						CTCAAATAAGGTAGTGGGTCT	0.353													19	77					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70360875	70360875	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:70360875G>A	uc003hek.3	-	1	752	c.705C>T	c.(703-705)TTC>TTT	p.F235F	UGT2B4_uc011cap.1_Silent_p.F99F|UGT2B4_uc003hel.3_Silent_p.F235F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	235					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CTTCACTGTAGAACTGATCCC	0.328													8	40					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71498390	71498390	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:71498390A>T	uc011caw.1	+	5	472	c.191A>T	c.(190-192)AAC>ATC	p.N64I		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	64					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AATCAATTCAACTTTATGAAC	0.303													86	214					0	0	1	0	0
RASSF6	166824	broad.mit.edu	37	4	74453564	74453564	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:74453564G>A	uc003hhd.1	-	5	594	c.471C>T	c.(469-471)TCC>TCT	p.S157S	RASSF6_uc003hhc.1_Silent_p.S125S|RASSF6_uc010iik.1_Silent_p.S125S|RASSF6_uc010iil.1_Silent_p.S113S	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	157					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			GACCTTCCTGGGAATTCCTTT	0.368													15	49					0	0	1	0	0
C4orf26	152816	broad.mit.edu	37	4	76489641	76489641	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:76489641G>A	uc003hip.1	+	2	420	c.385G>A	c.(385-387)GAA>AAA	p.E129K	C4orf26_uc011cbn.1_RNA|C4orf26_uc011cbo.1_Silent_p.R143R	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	129						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			CTCATCTGAGGAAAGCTGAGA	0.398													55	104					0	0	1	0	0
G3BP2	9908	broad.mit.edu	37	4	76582156	76582156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:76582156G>A	uc003hir.2	-	5	559	c.394C>T	c.(394-396)CGT>TGT	p.R132C	G3BP2_uc003his.2_Missense_Mutation_p.R132C|G3BP2_uc003hit.2_Missense_Mutation_p.R132C	NM_012297	NP_036429	Q9UN86	G3BP2_HUMAN	Ras-GTPase activating protein SH3 domain-binding	132	NTF2.				cytoplasmic sequestering of NF-kappaB|mRNA transport|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	GTPase activator activity|nucleotide binding|receptor signaling complex scaffold activity|RNA binding			breast(2)|central_nervous_system(1)	3			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TCTTCATAACGAAACATATCA	0.323													35	95					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77255279	77255279	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:77255279C>T	uc003hkb.3	-	18	2859	c.2706G>A	c.(2704-2706)AGG>AGA	p.R902R		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	902										skin(3)|ovary(2)|pancreas(1)	6						GTTTCAGGTCCCTTGTTGGAT	0.403													32	58					0	0	1	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82353484	82353484	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:82353484G>A	uc003hmi.1	-	13	1510	c.1366C>T	c.(1366-1368)CAT>TAT	p.H456Y	RASGEF1B_uc003hmj.1_Missense_Mutation_p.H455Y|RASGEF1B_uc010ijq.1_Missense_Mutation_p.H414Y	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	456					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						TTCTCTATATGATTTTCAGGT	0.378													10	31					0	0	1	0	0
HPSE	10855	broad.mit.edu	37	4	84230618	84230618	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:84230618C>T	uc003hoj.3	-	7	1020	c.921G>A	c.(919-921)AAG>AAA	p.K307K	HPSE_uc010ika.2_Silent_p.K249K|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Silent_p.K50K|HPSE_uc011cct.1_Silent_p.K307K|HPSE_uc003hok.3_Silent_p.K307K	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	307				K -> R (in Ref. 1; AAD45669, 2; AAD54941, 3; AAD41342, 4; AAD45379, 5; AAD54516, 8; AAX47106, 9; BAD96706 and 11; AAH51321).	carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	GAAAATCTTCCTTGGTAGCAG	0.289													9	28					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85562059	85562059	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:85562059C>T	uc011ccv.1	+	10	1446	c.948C>T	c.(946-948)TCC>TCT	p.S316S	CDS1_uc010ike.1_Silent_p.S120S	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	316					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		ATGTAAACTCCTTCGTGACAG	0.383													28	90					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88085213	88085213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:88085213G>A	uc011cdb.1	-	9	1941	c.1556C>T	c.(1555-1557)TCT>TTT	p.S519F	KLHL8_uc003hql.1_Missense_Mutation_p.S519F|KLHL8_uc003hqm.1_Missense_Mutation_p.S443F|KLHL8_uc003hqn.1_Missense_Mutation_p.S336F|KLHL8_uc010ikj.1_Missense_Mutation_p.S168F	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	519	Kelch 5.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		ACTCAGAGGAGAATTATCATC	0.393													12	36					0	0	1	0	0
IBSP	3381	broad.mit.edu	37	4	88731887	88731887	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:88731887G>A	uc003hqx.3	+	6	474	c.376G>A	c.(376-378)GGG>AGG	p.G126R		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	126	Asp/Glu-rich (acidic).				biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		AGGGTATACAGGGTTAGCTGC	0.408													18	70					0	0	1	0	0
HERC3	8916	broad.mit.edu	37	4	89574082	89574082	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:89574082C>T	uc003hrw.1	+	6	692	c.526C>T	c.(526-528)CCC>TCC	p.P176S	HERC3_uc003hrv.2_Missense_Mutation_p.P176S|HERC3_uc011cdn.1_Missense_Mutation_p.P58S	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	176	RCC1 4.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		GAAGGAGTTCCCCTCCCAAGC	0.562													10	25					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94031981	94031981	+	Silent	SNP	C	T	T	rs139988203		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:94031981C>T	uc011cdt.1	+	4	870	c.612C>T	c.(610-612)ATC>ATT	p.I204I	GRID2_uc010ikx.2_Silent_p.I204I|GRID2_uc011cdu.1_Silent_p.I109I|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	204	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity	p.I204I(1)		ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AAAACAACATCAATAAAATGA	0.418													32	69					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96761629	96761629	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:96761629G>A	uc003htr.3	+	1	391	c.328G>A	c.(328-330)GAT>AAT	p.D110N		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	110					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	AAACCCCTCGGATCACGTCAT	0.522													29	73					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100349017	100349017	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:100349017C>T	uc003huv.1	-	5	612	c.513G>A	c.(511-513)AAG>AAA	p.K171K		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	171					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	CATCATCAATCTTAGCAACAG	0.463													17	59					0	0	1	0	0
BANK1	55024	broad.mit.edu	37	4	102994868	102994868	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:102994868G>A	uc003hvy.3	+	16	2600	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	BANK1_uc003hvx.3_Missense_Mutation_p.E761K|BANK1_uc010ill.2_Missense_Mutation_p.E643K|BANK1_uc003hvz.3_Missense_Mutation_p.E746K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	776					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AGTTGAAAAGGAATTTGGTTT	0.328													13	55					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104067193	104067193	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:104067193G>A	uc003hxb.1	-	30	4296	c.4206C>T	c.(4204-4206)ATC>ATT	p.I1402I	CENPE_uc003hxc.1_Silent_p.I1377I	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1402	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCTCACTCACGATTTTGGTAG	0.358													24	61					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104511109	104511109	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:104511109G>A	uc003hxe.1	-	5	1271	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	376	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AAACTTTGATGAAAGGACACC	0.443													18	43					0	0	1	0	0
AIMP1	9255	broad.mit.edu	37	4	107253027	107253027	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:107253027T>C	uc011cfg.1	+	5	642	c.590T>C	c.(589-591)GTT>GCT	p.V197A	AIMP1_uc003hyg.2_Missense_Mutation_p.V197A|AIMP1_uc003hyh.2_Missense_Mutation_p.V221A	NM_001142415	NP_001135887	Q12904	AIMP1_HUMAN	small inducible cytokine subfamily E, member 1	197	tRNA-binding.				angiogenesis|apoptosis|cell adhesion|cell-cell signaling|chemotaxis|glucose metabolic process|inflammatory response|leukocyte migration|negative regulation of endothelial cell proliferation|signal transduction|tRNA aminoacylation for protein translation	aminoacyl-tRNA synthetase multienzyme complex|cytosol|endoplasmic reticulum|extracellular space|Golgi apparatus|nucleus|transport vesicle	cell surface binding|cytokine activity|protein homodimerization activity|tRNA binding				0						GTGAATCATGTTCCTCTTGAA	0.393													45	79					0	0	1	0	0
ARSJ	79642	broad.mit.edu	37	4	114823624	114823624	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:114823624G>A	uc003ibq.1	-	2	2494	c.1606C>T	c.(1606-1608)CCC>TCC	p.P536S	ARSJ_uc010imu.1_Missense_Mutation_p.P536S|ARSJ_uc010imv.1_Missense_Mutation_p.P364S	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	536						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		TCTTTGGGGGGATACCTGACC	0.418													18	33					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115856484	115856484	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:115856484G>A	uc003ibu.2	-	6	2093	c.1414C>T	c.(1414-1416)CCT>TCT	p.P472S	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	472	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GTCTGTCGAGGGAGGACCTGA	0.393													6	28					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997368	115997368	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:115997368C>T	uc003ibu.2	-	2	1504	c.825G>A	c.(823-825)TTG>TTA	p.L275L	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	275	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GCCAAAAGTTCAAGTTGTTGC	0.453													25	76					0	0	1	0	0
BBS7	55212	broad.mit.edu	37	4	122760816	122760816	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:122760816G>A	uc003ied.2	-	13	1515	c.1341C>T	c.(1339-1341)TGC>TGT	p.C447C	BBS7_uc003iee.1_Silent_p.C447C	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	447					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						TATCTGCCTGGCACCGATAAG	0.368									Bardet-Biedl_syndrome				3	18					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126242341	126242341	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:126242341C>T	uc003ifj.3	+	1	4775	c.4775C>T	c.(4774-4776)CCT>CTT	p.P1592L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1592	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCGTTGGTGCCTTCACAGTTG	0.453													37	88					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372419	126372419	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:126372419G>A	uc003ifj.3	+	9	10248	c.10248G>A	c.(10246-10248)GGG>GGA	p.G3416G	FAT4_uc011cgp.1_Silent_p.G1714G|FAT4_uc003ifi.1_Silent_p.G894G	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3416	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCAGTGAAGGGGTCCCAATAG	0.458													35	92					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373533	126373533	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:126373533G>A	uc003ifj.3	+	9	11362	c.11362G>A	c.(11362-11364)GAG>AAG	p.E3788K	FAT4_uc011cgp.1_Missense_Mutation_p.E2086K|FAT4_uc003ifi.1_Missense_Mutation_p.E1266K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3788	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAGCATCAAAGAGATCCTTCT	0.463													18	35					0	0	1	0	0
HSPA4L	22824	broad.mit.edu	37	4	128725193	128725193	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:128725193C>T	uc003ifm.2	+	8	1189	c.936C>T	c.(934-936)TCC>TCT	p.S312S	HSPA4L_uc010iny.1_Silent_p.S271S|HSPA4L_uc011cgr.1_Silent_p.S279S	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	312					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TGTGTGCTTCCCTTTTGGCCA	0.358													11	43					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452985	138452985	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:138452985G>A	uc003ihe.3	-	1	645	c.258C>T	c.(256-258)ATC>ATT	p.I86I	PCDH18_uc003ihf.3_Silent_p.I79I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	86	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCCCTATGCTGATTTCCCCAT	0.433													33	110					0	0	1	0	0
CCRN4L	25819	broad.mit.edu	37	4	139966000	139966000	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:139966000C>T	uc003ihl.2	+	3	861	c.668C>T	c.(667-669)CCT>CTT	p.P223L		NM_012118	NP_036250	Q9UK39	NOCT_HUMAN	CCR4 carbon catabolite repression 4-like	223					rhythmic process|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_hematologic(180;0.162)					CCCTGGTCACCTTGTCTAGAT	0.448													16	54					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140641034	140641034	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:140641034C>T	uc003ihz.1	-	7	3597	c.2845G>A	c.(2845-2847)GGA>AGA	p.G949R	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Missense_Mutation_p.G417R	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	950	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					TGGACTGTTCCCATAAGGCTC	0.577													24	81					0	0	1	0	0
ABCE1	6059	broad.mit.edu	37	4	146044254	146044254	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:146044254C>T	uc003ijx.2	+	14	1785	c.1345C>T	c.(1345-1347)CTG>TTG	p.L449L	ABCE1_uc003ijy.2_Silent_p.L449L|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	449	ABC transporter 2.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					AATGAAGCCTCTGCAAATTGA	0.299													11	30					0	0	1	0	0
TTC29	83894	broad.mit.edu	37	4	147796069	147796069	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:147796069C>T	uc003ikw.3	-	7	825	c.598G>A	c.(598-600)GAA>AAA	p.E200K	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.E226K|TTC29_uc010ipd.1_Missense_Mutation_p.E200K	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	200	TPR 1.						binding				0	all_hematologic(180;0.151)					TCAGCAGCTTCCAGAAGCTGA	0.423													7	21					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153884242	153884242	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:153884242C>A	uc003inf.2	+	7	1064	c.989C>A	c.(988-990)GCA>GAA	p.A330E		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	330	FH2.				actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GACACAAAAGCAAACAAACCT	0.408													25	75					2.12542e-12	2.15637e-12	1	1	0
KIAA0922	23240	broad.mit.edu	37	4	154513649	154513650	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:154513649_154513650AC>TT	uc003inm.3	+	18	1884_1885	c.1832_1833AC>TT	c.(1831-1833)AAC>ATT	p.N611I	KIAA0922_uc010ipp.2_Missense_Mutation_p.N612I|KIAA0922_uc010ipq.2_Intron	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	611	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GTGGTGCAGAACCCGTCCTCTT	0.381													17	37					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154625158	154625158	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:154625158C>T	uc003inq.2	+	3	1318	c.1099C>T	c.(1099-1101)CTC>TTC	p.L367F	TLR2_uc003inr.2_Missense_Mutation_p.L367F|TLR2_uc003ins.2_Missense_Mutation_p.L367F	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	367	LRR 8.|Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				ATACTTGGATCTCAGTGAAAA	0.328													5	27					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155720062	155720062	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:155720062G>A	uc003ioo.2	+	4	921	c.748G>A	c.(748-750)GAA>AAA	p.E250K	RBM46_uc011cim.1_Missense_Mutation_p.E250K|RBM46_uc003iop.1_Missense_Mutation_p.E250K	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	250	RRM 3.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AACTACAGAGGAAACAATTAA	0.368													8	11					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155749210	155749210	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:155749210C>T	uc003ioo.2	+	5	1766	c.1593C>T	c.(1591-1593)TCC>TCT	p.S531S	RBM46_uc011cim.1_3'UTR|RBM46_uc003iop.1_3'UTR	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	531							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				ATCAGGCCTCCTTCTTCTGAA	0.348													18	60					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631770	156631770	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:156631770C>T	uc003iov.2	+	7	989	c.453C>T	c.(451-453)ATC>ATT	p.I151I	GUCY1A3_uc003iou.2_Silent_p.I151I|GUCY1A3_uc010iqc.2_Silent_p.I151I|GUCY1A3_uc003iow.2_Silent_p.I151I|GUCY1A3_uc010iqd.2_Silent_p.I150I|GUCY1A3_uc003iox.2_Silent_p.I151I|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Silent_p.I151I|GUCY1A3_uc010iqe.2_Intron|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.I151I	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	151				VIKESLGEEVFKICYEEDENILGVVGGTLKDFLNSFSTLLK QSSHCQEAGKRGR -> LSKNLLVKRFLKYVTRKMKTSLGW LEAPLKIFKQLQYPSETEQPLPRSRKKGQ (in Ref. 1).	blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ATGAAAACATCCTTGGGGTGG	0.418													17	33					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632084	156632084	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:156632084C>T	uc003iov.2	+	7	1303	c.767C>T	c.(766-768)TCC>TTC	p.S256F	GUCY1A3_uc003iou.2_Missense_Mutation_p.S256F|GUCY1A3_uc010iqc.2_Missense_Mutation_p.S256F|GUCY1A3_uc003iow.2_Missense_Mutation_p.S256F|GUCY1A3_uc010iqd.2_Missense_Mutation_p.S255F|GUCY1A3_uc003iox.2_Missense_Mutation_p.S256F|GUCY1A3_uc003ioz.2_Missense_Mutation_p.S21F|GUCY1A3_uc003ioy.2_Missense_Mutation_p.S256F|GUCY1A3_uc010iqe.2_Missense_Mutation_p.S21F|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.S256F	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	256					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TTGTTGTACTCCGTTCACATG	0.483													23	68					0	0	1	0	0
FAM198B	51313	broad.mit.edu	37	4	159048669	159048669	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:159048669C>T	uc003ipp.3	-	5	1902	c.1450G>A	c.(1450-1452)GGA>AGA	p.G484R	FAM198B_uc003ipq.3_Missense_Mutation_p.G492R|FAM198B_uc003ipr.3_Missense_Mutation_p.G484R	NM_016613	NP_057697	Q6UWH4	F198B_HUMAN	hypothetical protein LOC51313 isoform 2	484	Extracellular (Potential).					Golgi membrane|integral to membrane					0						TGTCTACCTCCTTGACTTTCC	0.398													28	60					0	0	1	0	0
FSTL5	56884	broad.mit.edu	37	4	162459366	162459366	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:162459366C>T	uc003iqh.2	-	10	1700	c.1264G>A	c.(1264-1266)GAT>AAT	p.D422N	FSTL5_uc003iqi.2_Missense_Mutation_p.D421N|FSTL5_uc010iqv.2_Missense_Mutation_p.D421N	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	422	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ATGTCTTCATCCACTCCTGCT	0.423													39	80					0	0	1	0	0
ANP32C	23520	broad.mit.edu	37	4	165118528	165118528	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:165118528C>T	uc011cjk.1	-	1	336	c.336G>A	c.(334-336)AAG>AAA	p.K112K	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	112	LRR 4.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		GGTCTAAGCTCTTGAGGTTTT	0.423													31	95					0	0	1	0	0
ANXA10	11199	broad.mit.edu	37	4	169099099	169099099	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:169099099T>G	uc003irm.2	+	8	738	c.593T>G	c.(592-594)ATC>AGC	p.I198S	ANXA10_uc003irn.2_Missense_Mutation_p.I70S	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	198	Annexin 3.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		CTGCAAATGATCCTGTGCAAC	0.473													18	64					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169392998	169392998	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:169392998G>A	uc003irq.3	-	4	385	c.164C>T	c.(163-165)TCA>TTA	p.S55L	DDX60L_uc003irr.1_Missense_Mutation_p.S55L|DDX60L_uc003irt.1_Missense_Mutation_p.S55L	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	55							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CCACTTGAATGATTTTACACC	0.353													17	33					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169812116	169812116	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:169812116G>A	uc011cjx.1	+	11	2219	c.2008G>A	c.(2008-2010)GAT>AAT	p.D670N	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.D670N|PALLD_uc003irv.2_Missense_Mutation_p.D288N|PALLD_uc003irw.2_Missense_Mutation_p.D172N	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	894					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		AATAGCCTCCGATGAGGAAAT	0.448									Pancreatic_Cancer_Familial_Clustering_of				16	68					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173873375	173873375	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:173873375C>T	uc003isv.2	+	10	2073	c.1337C>T	c.(1336-1338)CCT>CTT	p.P446L		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	446	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						AAATACTACCCTCCAGTGGAG	0.602													10	12					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187005018	187005018	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:187005018G>A	uc003iyq.2	+	4	2279	c.2178G>A	c.(2176-2178)GAG>GAA	p.E726E	TLR3_uc011ckz.1_Silent_p.E449E|TLR3_uc003iyr.2_Silent_p.E449E	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	726	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TCCACTTTGAGGGCTGGAGGA	0.363													49	59					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187209661	187209661	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:187209661G>A	uc003iza.1	+	15	2104	c.1771G>A	c.(1771-1773)GGC>AGC	p.G591S	uc003izb.1_RNA	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	591	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GCATCTGGTAGGCATCACGAG	0.552													32	48					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5242214	5242214	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:5242214C>T	uc003jdl.2	+	17	2710	c.2572C>T	c.(2572-2574)CCT>TCT	p.P858S	ADAMTS16_uc003jdk.1_Missense_Mutation_p.P858S	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	858	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ATACTCCATGCCTCGCTTGGG	0.547													24	71					0	0	1	0	0
NSUN2	54888	broad.mit.edu	37	5	6616888	6616888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:6616888G>A	uc003jdu.2	-	9	1038	c.973C>T	c.(973-975)CCT>TCT	p.P325S	NSUN2_uc003jdt.2_Missense_Mutation_p.P89S|NSUN2_uc011cmk.1_Missense_Mutation_p.P290S|NSUN2_uc003jdv.2_Missense_Mutation_p.P89S	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	325						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TCCTCAATAGGGTTTAGTGAA	0.458													42	35					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9337893	9337893	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:9337893C>T	uc003jek.2	-	4	868	c.156G>A	c.(154-156)GCG>GCA	p.A52A		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	52	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CAGCATTCTTCGCTCTGAACT	0.363													12	38					0	0	1	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629871	9629871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:9629871C>T	uc003jem.1	-	1	593	c.274G>A	c.(274-276)GAA>AAA	p.E92K		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	92	Helical; Name=3; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						AGCCAAAGTTCCAATTCATTT	0.413													6	19					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13901560	13901560	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:13901560C>T	uc003jfd.2	-	14	1895	c.1853G>A	c.(1852-1854)CGA>CAA	p.R618Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	618	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGCTGGTTTCGAGCCAGAGG	0.473									Kartagener_syndrome				25	12					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15936891	15936891	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:15936891G>C	uc003jfn.1	+	4	1553	c.1072G>C	c.(1072-1074)GCG>CCG	p.A358P		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	358	LRR 7.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						CCTGAGCATCGCGCACTGCGG	0.667													9	12					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21752109	21752109	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:21752109C>T	uc010iuc.2	-	12	2580	c.2122G>A	c.(2122-2124)GAA>AAA	p.E708K	CDH12_uc011cno.1_Missense_Mutation_p.E668K|CDH12_uc003jgk.2_Missense_Mutation_p.E708K|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	708	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GTGTTATCTTCCATGGGTGGT	0.453										HNSCC(59;0.17)			12	58					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23521133	23521133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:23521133G>A	uc003jgo.2	+	6	535	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	118					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACATTAAAGGGAATGCCCAAG	0.373										HNSCC(3;0.000094)			17	15					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26915882	26915882	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:26915882G>A	uc003jgs.1	-	3	548	c.379C>T	c.(379-381)CGT>TGT	p.R127C	CDH9_uc010iug.2_Missense_Mutation_p.R127C	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	127	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GCCTTGGCACGAAGAATGTAC	0.393													71	73					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31299667	31299667	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:31299667G>A	uc003jhe.1	+	5	1066	c.740G>A	c.(739-741)GGA>GAA	p.G247E	CDH6_uc003jhd.1_Missense_Mutation_p.G247E	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	247	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CAGATGGGAGGATTATCTGGG	0.478													16	65					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302253	31302253	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:31302253C>T	uc003jhe.1	+	6	1173	c.847C>T	c.(847-849)CCG>TCG	p.P283S	CDH6_uc003jhd.1_Missense_Mutation_p.P283S	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	283	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ATCTTCTCCACCGGGGACACC	0.423													7	24					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302386	31302386	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:31302386G>A	uc003jhe.1	+	6	1306	c.980G>A	c.(979-981)GGG>GAG	p.G327E	CDH6_uc003jhd.1_Missense_Mutation_p.G327E	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	327	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACCCAGGAAGGGATTATAACT	0.443													11	25					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	31995809	31995809	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:31995809G>A	uc003jhl.2	+	4	1494	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	PDZD2_uc003jhm.2_Missense_Mutation_p.G369E|PDZD2_uc011cnx.1_Missense_Mutation_p.G195E	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	369	PDZ 2.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GTGAAGGAAGGAGGTGCCGCT	0.403													11	42					0	0	1	0	0
GDNF	2668	broad.mit.edu	37	5	37815993	37815993	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:37815993C>T	uc011cpi.1	-	3	596	c.396G>A	c.(394-396)CTG>CTA	p.L132L	GDNF_uc011cpc.1_Silent_p.L54L|GDNF_uc011cpd.1_Silent_p.L80L|GDNF_uc011cpe.1_Silent_p.L106L|GDNF_uc011cpf.1_Silent_p.L106L|GDNF_uc011cpg.1_Silent_p.L149L|GDNF_uc011cph.1_Silent_p.L123L	NM_000514	NP_000505	P39905	GDNF_HUMAN	glial cell derived neurotrophic factor isoform 1	132					adult locomotory behavior|anti-apoptosis|axon guidance|branching involved in ureteric bud morphogenesis|enteric nervous system development|mRNA stabilization|negative regulation of neuron apoptosis|neural crest cell migration|peristalsis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of dopamine secretion|positive regulation of monooxygenase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|postganglionic parasympathetic nervous system development|regulation of dopamine uptake|signal transduction|sympathetic nervous system development	extracellular region	growth factor activity|protein homodimerization activity				0	all_lung(31;0.00118)					TTTCATAGCCCAGACCCAAGT	0.458													30	67					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406262	38406262	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:38406262C>T	uc003jlc.1	+	7	1071	c.747C>T	c.(745-747)CCC>CCT	p.P249P	EGFLAM_uc003jlb.1_Silent_p.P249P|EGFLAM_uc003jle.1_Silent_p.P15P|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	249						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GCTATGGACCCCGTTATATCA	0.483													17	40					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38881853	38881853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:38881853G>A	uc003jln.1	+	4	772	c.405G>A	c.(403-405)TGG>TGA	p.W135*	OSMR_uc003jlm.1_Nonsense_Mutation_p.W135*	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	135	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GGAGTTCCTGGGAGGAAGTCA	0.418													22	67					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40958352	40958352	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:40958352G>A	uc003jmh.2	+	11	1592	c.1478G>A	c.(1477-1479)GGG>GAG	p.G493E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	493					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTCCTCGTAGGGAATCAAGCA	0.488													16	60					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41033182	41033182	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:41033182G>A	uc003jmj.3	-	23	2812	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F	HEATR7B2_uc003jmi.3_Silent_p.F329F	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	774							binding			ovary(6)|central_nervous_system(2)	8						AGGAAAACTGGAACCCCTGAT	0.453													14	34					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41154047	41154047	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:41154047G>A	uc003jmk.2	-	15	2365	c.2155C>T	c.(2155-2157)CAG>TAG	p.Q719*	C6_uc003jml.1_Nonsense_Mutation_p.Q719*	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	719	C5b-binding domain.|Sushi 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TACAATCTCTGAAATGGTGTA	0.458													16	31					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41199882	41199882	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:41199882G>A	uc003jmk.2	-	4	643	c.433C>T	c.(433-435)CGC>TGC	p.R145C	C6_uc003jml.1_Missense_Mutation_p.R145C	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	145	LDL-receptor class A.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTGTCACAGCGAAATTTATTC	0.413													14	55					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45262141	45262141	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:45262141G>A	uc003jok.2	-	8	2580	c.2555C>T	c.(2554-2556)CCG>CTG	p.P852L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	852	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TCCTCGGTTCGGGGGGATGGC	0.637													34	73					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55185828	55185828	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:55185828G>A	uc003jql.2	+	6	702	c.637G>A	c.(637-639)GAT>AAT	p.D213N	IL31RA_uc003jqk.2_Missense_Mutation_p.D213N|IL31RA_uc011cqj.1_Missense_Mutation_p.D71N|IL31RA_uc003jqm.2_Missense_Mutation_p.D181N|IL31RA_uc003jqn.2_Missense_Mutation_p.D213N|IL31RA_uc010iwa.1_Missense_Mutation_p.D181N|IL31RA_uc003jqo.2_Missense_Mutation_p.D71N	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	181	Extracellular (Potential).|Fibronectin type-III 2.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GAACCGTAAGGATAAAAACCA	0.453													15	31					0	0	1	0	0
MAP3K1	4214	broad.mit.edu	37	5	56170920	56170921	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:56170920_56170921CC>TT	uc003jqw.3	+	10	2249_2250	c.1748_1749CC>TT	c.(1747-1749)GCC>GTT	p.A583V		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	583					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AGAGAGATGGCCCTCAGGCGTC	0.5													31	71					0	0	1	0	0
PLK2	10769	broad.mit.edu	37	5	57750513	57750513	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:57750513G>A	uc003jrn.2	-	14	2082	c.1955C>T	c.(1954-1956)TCT>TTT	p.S652F		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	652	POLO box 2.				positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		GAAAGTTGTAGATATCCTATC	0.353													21	44					0	0	1	0	0
PDE4D	5144	broad.mit.edu	37	5	58271584	58271584	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:58271584A>T	uc003jsa.2	-	14	2085	c.1913T>A	c.(1912-1914)ATA>AAA	p.I638K	PDE4D_uc003jrx.2_Missense_Mutation_p.I502K|PDE4D_uc003jry.2_Missense_Mutation_p.I336K|PDE4D_uc003jrz.2_Missense_Mutation_p.I574K|PDE4D_uc003jsb.2_Missense_Mutation_p.I577K|PDE4D_uc003jrt.2_Missense_Mutation_p.I336K|PDE4D_uc003jru.2_Missense_Mutation_p.I414K|PDE4D_uc003jrv.2_Missense_Mutation_p.I508K|PDE4D_uc003jrw.2_Missense_Mutation_p.I516K|PDE4D_uc003jrs.2_Missense_Mutation_p.I347K	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	638					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	CTCCTCCATTATCCGGTCCGT	0.512													16	47					0	0	1	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60369017	60369017	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:60369017G>A	uc003jsp.3	+	2	320	c.193G>A	c.(193-195)GGG>AGG	p.G65R	NDUFAF2_uc003jso.3_Intron	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	65						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				CTATGAAGCAGGGGATATTCC	0.308													39	90					0	0	1	0	0
NLN	57486	broad.mit.edu	37	5	65081632	65081632	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:65081632C>T	uc003juf.2	+	7	969	c.853C>T	c.(853-855)CCA>TCA	p.P285S	NLN_uc003jue.2_Missense_Mutation_p.P285S|NLN_uc003jug.2_Missense_Mutation_p.P114S|NLN_uc010iww.2_5'UTR	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor	285					proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		GCAGCTACTCCCACTGCGAAC	0.413													12	28					0	0	1	0	0
MRPS27	23107	broad.mit.edu	37	5	71533925	71533925	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:71533925C>T	uc003kbz.3	-	5	348	c.312G>A	c.(310-312)CTG>CTA	p.L104L	MRPS27_uc003kca.3_Silent_p.L48L|MRPS27_uc011cse.1_Silent_p.L118L|MRPS27_uc010iza.2_Silent_p.L48L|MRPS27_uc010iyz.1_RNA	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	104						mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		TCCAGTTTCTCAGGTACCAGC	0.413													8	35					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73163946	73163946	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:73163946C>T	uc011csq.1	+	19	2330	c.2319C>T	c.(2317-2319)TCC>TCT	p.S773S	RGNEF_uc003kcx.2_Silent_p.S773S|RGNEF_uc010izf.2_Silent_p.S773S|RGNEF_uc011csr.1_Silent_p.S460S	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	773					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CAGCCACATCCTTGGAGTCTG	0.498													7	12					0	0	1	0	0
COL4A3BP	10087	broad.mit.edu	37	5	74695139	74695139	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:74695139G>A	uc011csu.1	-	11	1606	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F	COL4A3BP_uc003kds.2_Intron|COL4A3BP_uc003kdt.2_Missense_Mutation_p.S523F|COL4A3BP_uc003kdu.2_Missense_Mutation_p.S395F	NM_005713	NP_005704	Q9Y5P4	C43BP_HUMAN	alpha 3 type IV collagen binding protein isoform	395	START.				ER to Golgi ceramide transport|immune response	cytosol|endoplasmic reticulum membrane|Golgi apparatus	ceramide binding|phosphatidylinositol-4-phosphate binding|protein binding|protein kinase activity			skin(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;1e-53)		CAGTACCTGGGAGCTGAATCT	0.438													6	19					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75960883	75960883	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:75960883G>A	uc003kek.2	+	22	2784	c.2562G>A	c.(2560-2562)AAG>AAA	p.K854K	IQGAP2_uc010izv.2_Silent_p.K407K|IQGAP2_uc011csv.1_Silent_p.K350K|IQGAP2_uc003kel.2_Silent_p.K350K	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	854					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AGCTGAACAAGAAAAAAGGAG	0.328													7	21					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79027218	79027218	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:79027218C>T	uc003kgc.2	+	2	2702	c.2630C>T	c.(2629-2631)TCT>TTT	p.S877F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	877						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GCCACCCCATCTGAATATGTT	0.473													16	30					0	0	1	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855016	79855016	+	Missense_Mutation	SNP	C	T	T	rs140339198		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:79855016C>T	uc010jam.2	-	4	1173	c.823G>A	c.(823-825)GAA>AAA	p.E275K	ANKRD34B_uc003kgw.2_Missense_Mutation_p.E275K|ANKRD34B_uc010jan.2_Missense_Mutation_p.E275K	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	275						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		GATAGTTCTTCCTCTGGTGTA	0.488													22	54					0	0	1	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855405	79855405	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:79855405C>T	uc010jam.2	-	4	784	c.434G>A	c.(433-435)GGG>GAG	p.G145E	ANKRD34B_uc003kgw.2_Missense_Mutation_p.G145E|ANKRD34B_uc010jan.2_Missense_Mutation_p.G145E	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	145	ANK 4.					cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		GACCTCTTTCCCTTTTGCCTT	0.403													45	91					0	0	1	0	0
MSH3	4437	broad.mit.edu	37	5	80071573	80071573	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:80071573G>A	uc003kgz.2	+	16	2567	c.2314G>A	c.(2314-2316)GGA>AGA	p.G772R		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	772					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		GGTAAAGGTTGGAAGGTAGGT	0.303								MMR					4	16					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89953787	89953787	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:89953787G>A	uc003kju.2	+	21	4540	c.4444G>A	c.(4444-4446)GAT>AAT	p.D1482N	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1482	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGATGCAGGATGTGAGGTC	0.418													37	60					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89954007	89954007	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:89954007C>T	uc003kju.2	+	21	4760	c.4664C>T	c.(4663-4665)TCG>TTG	p.S1555L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1555	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCTCGTATTTCGGAAGAAAAT	0.353													18	74					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89981675	89981675	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:89981675G>A	uc003kju.2	+	29	6449	c.6353G>A	c.(6352-6354)GGA>GAA	p.G2118E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2118	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GATGCATTTGGAACTCTTCAG	0.433													14	36					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89990385	89990385	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:89990385C>T	uc003kju.2	+	33	7908	c.7812C>T	c.(7810-7812)ACC>ACT	p.T2604T	GPR98_uc003kjt.2_Silent_p.T310T|GPR98_uc003kjv.2_Silent_p.T204T	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2604	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCCCCAAACCTTGGTGGAGC	0.458													60	181					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90024571	90024571	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:90024571G>A	uc003kju.2	+	49	10343	c.10247G>A	c.(10246-10248)GGA>GAA	p.G3416E	GPR98_uc003kjt.2_Missense_Mutation_p.G1122E|GPR98_uc003kjv.2_Missense_Mutation_p.G1016E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3416	EAR 4.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCAACAAGGGAGGCTCTGTG	0.488													67	86					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90040914	90040914	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:90040914C>T	uc003kju.2	+	51	10697	c.10601C>T	c.(10600-10602)TCG>TTG	p.S3534L	GPR98_uc003kjt.2_Missense_Mutation_p.S1240L|GPR98_uc003kjv.2_Missense_Mutation_p.S1134L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3534	EAR 6.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGCTGGAATTCGGAGCGTAAT	0.388													76	325					0	0	1	0	0
POU5F2	134187	broad.mit.edu	37	5	93076451	93076451	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:93076451G>A	uc003kkl.1	-	1	859	c.819C>T	c.(817-819)TCC>TCT	p.S273S	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	273						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		TCTCCCGTGGGGAAGCATCAT	0.582													5	12					0	0	1	0	0
CHD1	1105	broad.mit.edu	37	5	98232049	98232049	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:98232049C>A	uc003knf.2	-	11	1739	c.1591G>T	c.(1591-1593)GGA>TGA	p.G531*		NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	531	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	AAAAAAGGTCCATATAATTGA	0.378													15	36					3.45872e-05	3.48279e-05	1	1	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607													3	8					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101816134	101816134	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:101816134C>T	uc003knn.2	-	2	535	c.363G>A	c.(361-363)GTG>GTA	p.V121V	SLCO6A1_uc003kno.2_Silent_p.V121V|SLCO6A1_uc003knp.2_Silent_p.V121V|SLCO6A1_uc003knq.2_Silent_p.V121V	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	121	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GACCAAACACCACACCTAAAA	0.303													23	56					0	0	1	0	0
PAM	5066	broad.mit.edu	37	5	102345530	102345530	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:102345530C>T	uc003knw.2	+	20	2664	c.2291C>T	c.(2290-2292)TCC>TTC	p.S764F	PAM_uc003kns.2_Missense_Mutation_p.S657F|PAM_uc003knt.2_Missense_Mutation_p.S764F|PAM_uc003knu.2_Missense_Mutation_p.S764F|PAM_uc003knv.2_Missense_Mutation_p.S764F|PAM_uc011cuz.1_Missense_Mutation_p.S667F|PAM_uc003knz.2_Missense_Mutation_p.S4F	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	764	Peptidyl-alpha-hydroxyglycine alpha- amidating lyase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	ATGAACTTTTCCAATGGGGAA	0.393													22	47					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110560272	110560272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:110560272G>A	uc011cvj.1	+	2	190	c.91G>A	c.(91-93)GAT>AAT	p.D31N	CAMK4_uc003kpf.2_Missense_Mutation_p.D31N|CAMK4_uc010jbv.2_5'UTR	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	31					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		CCTCGTCCCGGATTACTGGAT	0.677													5	23					0	0	1	0	0
PRR16	51334	broad.mit.edu	37	5	120022285	120022285	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:120022285G>A	uc003ksq.2	+	2	959	c.796G>A	c.(796-798)GGA>AGA	p.G266R	PRR16_uc003ksp.2_Missense_Mutation_p.G243R|PRR16_uc003ksr.2_Missense_Mutation_p.G196R	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	266	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		AGAAAATGGGGGAATGGGAAT	0.547													12	25					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759425	121759425	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:121759425C>T	uc003ksw.1	+	4	1199	c.993C>T	c.(991-993)ATC>ATT	p.I331I	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Silent_p.I331I|SNCAIP_uc003ksx.1_Silent_p.I378I|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Silent_p.I331I	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	331					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AAGGACAGATCTCTCTCCTGG	0.403													10	47					0	0	1	0	0
PRRC1	133619	broad.mit.edu	37	5	126869366	126869366	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:126869366T>C	uc003kuk.2	+	6	989	c.809T>C	c.(808-810)GTT>GCT	p.V270A	PRRC1_uc003kuj.3_Missense_Mutation_p.V270A	NM_130809	NP_570721	Q96M27	PRRC1_HUMAN	proline-rich coiled-coil 1	270						Golgi apparatus					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0851)|Epithelial(69;0.113)		GAAGTAAAAGTTGCTGCTGTC	0.413													39	71					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127671215	127671215	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:127671215G>A	uc003kuu.2	-	29	4218	c.3779C>T	c.(3778-3780)TCA>TTA	p.S1260L	FBN2_uc003kuv.2_Missense_Mutation_p.S1227L	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1260	EGF-like 19; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCTTCCCTCTGAATTTGTGCA	0.453													32	78					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128368934	128368934	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:128368934G>A	uc003kuy.2	+	11	2215	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E607K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	607					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		ACTGACCAGGGAACTTTATGA	0.338													7	17					0	0	1	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130828463	130828463	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:130828463G>A	uc003kvn.1	-	14	1749	c.1543C>T	c.(1543-1545)CTC>TTC	p.L515F	RAPGEF6_uc003kvp.1_Missense_Mutation_p.L565F|RAPGEF6_uc003kvo.1_Missense_Mutation_p.L515F|RAPGEF6_uc010jdi.1_Missense_Mutation_p.L515F|RAPGEF6_uc010jdj.1_Missense_Mutation_p.L515F|RAPGEF6_uc003kvq.2_Missense_Mutation_p.L232F|RAPGEF6_uc003kvr.2_Missense_Mutation_p.L515F|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.L515F	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	515	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AATAACCGGAGATGACCATTC	0.378													8	20					0	0	1	0	0
TCF7	6932	broad.mit.edu	37	5	133473817	133473817	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:133473817A>T	uc003kyt.2	+	4	705	c.509A>T	c.(508-510)CAT>CTT	p.H170L	TCF7_uc003kyu.1_Missense_Mutation_p.H55L|TCF7_uc003kyv.2_Missense_Mutation_p.H55L|TCF7_uc003kyw.2_Missense_Mutation_p.H55L|TCF7_uc003kyx.2_5'UTR|TCF7_uc003kyy.2_Missense_Mutation_p.H55L|TCF7_uc003kyz.2_Missense_Mutation_p.H55L|TCF7_uc003kza.2_Missense_Mutation_p.H55L	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	170					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AACAGCCCACATCCCACCCCT	0.592													14	30					0	0	1	0	0
C5orf20	140947	broad.mit.edu	37	5	134782696	134782696	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:134782696G>A	uc003lav.2	-	1	343	c.103C>T	c.(103-105)CCA>TCA	p.P35S		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	35						nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGGAACTCTGGGGTTTCCCCA	0.597													3	12					0	0	1	0	0
FBXL21	26223	broad.mit.edu	37	5	135276775	135276775	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:135276775C>A	uc010jec.1	+	5	741	c.720C>A	c.(718-720)TAC>TAA	p.Y240*	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	240					rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGAATTATTACATCCTAACTG	0.393													27	79					2.24059e-21	2.28061e-21	1	1	0
PCDHA1	56147	broad.mit.edu	37	5	140167200	140167200	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140167200C>T	uc003lhb.2	+	1	1325	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	PCDHA1_uc003lha.2_Missense_Mutation_p.S442F|PCDHA1_uc003lgz.2_Missense_Mutation_p.S442F	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	442	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAGGGTGTCCGTGGAGGTG	0.662													38	77					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182848	140182848	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140182848C>T	uc003lhf.2	+	1	2066	c.2066C>T	c.(2065-2067)CCG>CTG	p.P689L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.P689L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	689	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACGGGCCCGGAAGCTGCA	0.637													19	39					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201924	140201924	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140201924G>A	uc003lhl.2	+	1	564	c.564G>A	c.(562-564)ACG>ACA	p.T188T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.T188T|PCDHA5_uc003lhj.1_Silent_p.T188T	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	188	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGAAGAAACGAACTTTTTAG	0.363													12	35					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207946	140207946	+	Silent	SNP	C	T	T	rs140846988	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140207946C>T	uc003lho.2	+	1	297	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.I90I|PCDHA6_uc011dab.1_Silent_p.I90I	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.602													57	161					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215568	140215568	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140215568C>T	uc003lhq.2	+	1	1600	c.1600C>T	c.(1600-1602)CAG>TAG	p.Q534*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Nonsense_Mutation_p.Q534*	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	534	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGCAGTTCCAGGTGAGCGC	0.682													33	130					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221363	140221363	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140221363C>T	uc003lhs.2	+	1	457	c.457C>T	c.(457-459)CCG>TCG	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P153S	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	153	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCGCTAGAGGG	0.478													22	66					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221551	140221551	+	Silent	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140221551A>T	uc003lhs.2	+	1	645	c.645A>T	c.(643-645)ACA>ACT	p.T215T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.T215T	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	215	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACAGCCACAGATGGGGGCA	0.478													19	53					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140223227	140223227	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140223227C>T	uc003lhs.2	+	1	2321	c.2321C>T	c.(2320-2322)CCC>CTC	p.P774L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P774L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	774	Cytoplasmic (Potential).|PXXP 1.|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTTCAGCCCCTGCCTTCCT	0.522													15	34					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229256	140229256	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140229256C>T	uc003lhu.2	+	1	1900	c.1176C>T	c.(1174-1176)CAC>CAT	p.H392H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.H392H	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	392	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACGCCCCACGTCCCCTTCA	0.557													36	74					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255703	140255703	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140255703G>A	uc003lic.2	+	1	773	c.646G>A	c.(646-648)GAT>AAT	p.D216N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.D216N	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	216	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGGTAATCGATGGCGGTAA	0.393													11	52					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140257122	140257122	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140257122C>T	uc003lic.2	+	1	2192	c.2065C>T	c.(2065-2067)CCC>TCC	p.P689S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.P689S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	689	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTGTGGATCCCGAAGCGGC	0.652													13	39					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347891	140347891	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140347891C>T	uc003lii.2	+	1	1780	c.1540C>T	c.(1540-1542)CAA>TAA	p.Q514*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Nonsense_Mutation_p.Q514*	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	514	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGGAGATTCAAGGGCTGCC	0.493													21	76					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501943	140501943	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140501943G>A	uc003lip.1	+	1	363	c.363G>A	c.(361-363)TTG>TTA	p.L121L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	121	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAATTATTGATCCAGGACA	0.428													24	45					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503688	140503688	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140503688C>T	uc003lip.1	+	1	2108	c.2108C>T	c.(2107-2109)TCG>TTG	p.S703L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	703	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTCTCGGTGCTCCTG	0.706													42	132					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515442	140515442	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140515442C>T	uc003liq.2	+	1	643	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	142	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTAAAAATCCCAGAGAGCA	0.438													20	64					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558780	140558780	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140558780G>A	uc011dai.1	+	1	1351	c.1165G>A	c.(1165-1167)GAT>AAT	p.D389N	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	389	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATTCAGGAGGATCTACCCTT	0.453													27	54					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559941	140559941	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140559941C>T	uc011dai.1	+	1	2512	c.2326C>T	c.(2326-2328)CAG>TAG	p.Q776*	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	776	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTAATATTCAGGGCCATTC	0.428													19	62					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563568	140563568	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140563568A>T	uc003liv.2	+	1	2589	c.1434A>T	c.(1432-1434)AGA>AGT	p.R478S	PCDHB16_uc010jfw.1_Missense_Mutation_p.R150S	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	478	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCACAGACAGAGACTCAGGCA	0.647													14	36					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572902	140572902	+	Silent	SNP	C	T	T	rs150690310		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140572902C>T	uc003lix.2	+	1	951	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	259	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding	p.F259F(1)		ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCATTGGGTTCCTTATTGTTA	0.463													19	48					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573559	140573559	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140573559A>T	uc003lix.2	+	1	1608	c.1434A>T	c.(1432-1434)AGA>AGT	p.R478S		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	478	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCACAGACAGAGACTCGGGCA	0.667													19	204					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588593	140588593	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140588593A>C	uc003liz.2	+	1	303	c.114A>C	c.(112-114)GAA>GAC	p.E38D	PCDHB12_uc011dak.1_5'UTR	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	38	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGATGGAGGAATTGCAGAGCG	0.522													38	75					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589646	140589646	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140589646C>T	uc003liz.2	+	1	1356	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	PCDHB12_uc011dak.1_Silent_p.I52I	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	389	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGAGGACATCCCATTCGTGC	0.473													15	35					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594265	140594265	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140594265G>A	uc003lja.1	+	1	757	c.570G>A	c.(568-570)AGG>AGA	p.R190R		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	190	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGATGGCAGGAAATACCCAG	0.512													6	35					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740899	140740899	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140740899G>A	uc003ljs.1	+	1	1197	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Silent_p.K399K|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	399	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCCTCAAAGAACTATTACA	0.483													30	76					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751458	140751458	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140751458G>A	uc003ljw.1	+	1	1497	c.1497G>A	c.(1495-1497)CGG>CGA	p.R499R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.R499R|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	499	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGCCGCGGGAGCTGTCGT	0.652													27	55					0	0	1	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779779	140779779	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:140779779C>T	uc003lkf.1	+	1	2085	c.2085C>T	c.(2083-2085)ATC>ATT	p.I695I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.I695I|PCDHGA9_uc011dax.1_5'Flank|PCDHGA9_uc003lkh.1_5'Flank	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	695	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCCTTGATCTCAGTGCTCT	0.622													48	140					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143853436	143853436	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:143853436G>A	uc003lnm.1	+	4	1675	c.1046G>A	c.(1045-1047)GGC>GAC	p.G349D	KCTD16_uc003lnn.1_Missense_Mutation_p.G349D	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	349						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			ATCAAGAAGGGCCCTGTCCAG	0.572													22	53					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439483	145439483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:145439483C>T	uc003lnt.2	+	9	1848	c.1610C>T	c.(1609-1611)TCC>TTC	p.S537F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S537F|SH3RF2_uc011dbm.1_Missense_Mutation_p.S22F|SH3RF2_uc003lnu.2_Missense_Mutation_p.S28F|SH3RF2_uc011dbn.1_Missense_Mutation_p.S28F|SH3RF2_uc011dbo.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	537							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGGTAGGCTCCCTCAGACGC	0.627													22	42					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439634	145439635	+	Missense_Mutation	DNP	GG	AA	AA	rs149337508	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:145439634_145439635GG>AA	uc003lnt.2	+	9	1999_2000	c.1761_1762GG>AA	c.(1759-1764)AGGGGC>AGAAGC	p.G588S	SH3RF2_uc011dbl.1_Missense_Mutation_p.G588S|SH3RF2_uc011dbm.1_Missense_Mutation_p.G73S|SH3RF2_uc003lnu.2_Missense_Mutation_p.G79S|SH3RF2_uc011dbn.1_Missense_Mutation_p.G79S|SH3RF2_uc011dbo.1_Missense_Mutation_p.G45S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	588							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCATCAGCAGGGGCAGTGAGGC	0.644													10	36					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147465992	147465992	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:147465992G>A	uc003lox.2	+	5	380	c.307G>A	c.(307-309)GGA>AGA	p.G103R	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Missense_Mutation_p.G75R|SPINK5_uc010jgr.2_Missense_Mutation_p.G84R|SPINK5_uc003low.2_Missense_Mutation_p.G103R|SPINK5_uc003loy.2_Missense_Mutation_p.G103R	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	103	Kazal-like 2.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTTAAAAAAGGAGAAAGAGA	0.343													24	34					0	0	1	0	0
SPINK13	153218	broad.mit.edu	37	5	147665570	147665570	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:147665570C>T	uc003lpc.2	+	5	306	c.244C>T	c.(244-246)CAT>TAT	p.H82Y	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	82	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0						TAGGGAATTTCATTATCGTAT	0.284													16	34					0	0	1	0	0
ADRB2	154	broad.mit.edu	37	5	148207120	148207120	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:148207120C>T	uc003lpr.1	+	1	965	c.726C>T	c.(724-726)GTC>GTT	p.V242V	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	242	Cytoplasmic.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	GCTTCCATGTCCAGAACCTTA	0.552													12	43					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153065807	153065807	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:153065807G>A	uc003lva.3	+	8	1417	c.1052G>A	c.(1051-1053)GGA>GAA	p.G351E	GRIA1_uc003luy.3_Missense_Mutation_p.G351E|GRIA1_uc003luz.3_Missense_Mutation_p.G256E|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G271E|GRIA1_uc011dcx.1_Missense_Mutation_p.G282E|GRIA1_uc011dcy.1_Missense_Mutation_p.G361E|GRIA1_uc011dcz.1_Missense_Mutation_p.G361E|GRIA1_uc010jia.1_Missense_Mutation_p.G331E	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	351	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTTTAACAGGAAACGTGCAG	0.443													27	48					0	0	1	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156278136	156278136	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:156278136C>A	uc003lwf.1	+	1	588	c.563C>A	c.(562-564)TCA>TAA	p.S188*		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						ACGGAAGAATCAAATCAAGGA	0.348													4	87					0.184627	0.184726	1	1	0
IL12B	3593	broad.mit.edu	37	5	158745789	158745789	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:158745789G>A	uc003lxr.1	-	6	852	c.810C>T	c.(808-810)TCC>TCT	p.S270S		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	270	Fibronectin type-III.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAATGTCAGGGAGAAGTAGG	0.507													18	47					0	0	1	0	0
IL12B	3593	broad.mit.edu	37	5	158750299	158750299	+	Missense_Mutation	SNP	C	T	T	rs144020395		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:158750299C>T	uc003lxr.1	-	3	169	c.127G>A	c.(127-129)GGA>AGA	p.G43R		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	43	Ig-like C2-type.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACCATTTCTCCAGGGGCATCC	0.408													10	28					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159680408	159680408	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:159680408G>A	uc003lyb.1	-	7	1537	c.1285C>T	c.(1285-1287)CCC>TCC	p.P429S	CCNJL_uc011dee.1_Missense_Mutation_p.P381S|CCNJL_uc003lyc.1_RNA	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	429						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCCGGTGGGGAACATGTGG	0.582													13	34					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159680441	159680441	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:159680441C>T	uc003lyb.1	-	7	1504	c.1252G>A	c.(1252-1254)GGA>AGA	p.G418R	CCNJL_uc011dee.1_Missense_Mutation_p.G370R|CCNJL_uc003lyc.1_RNA	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	418						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TAGCTGCTTCCATAGGTGGTG	0.597													16	38					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160049592	160049592	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:160049592C>T	uc003lym.1	-	14	2468	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	ATP10B_uc010jit.1_5'Flank|ATP10B_uc003lyn.2_Missense_Mutation_p.E99K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	541	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACATCTTTTTCCTGGAAGAGA	0.493													15	28					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167552022	167552022	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:167552022G>A	uc010jjd.2	+	11	2176	c.2176G>A	c.(2176-2178)GAT>AAT	p.D726N	ODZ2_uc003lzr.3_Missense_Mutation_p.D494N|ODZ2_uc003lzt.3_Missense_Mutation_p.D90N|ODZ2_uc010jje.2_5'UTR|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTGCAGCTGCGATCCCAACTG	0.597													7	6					0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167850706	167850706	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:167850706G>A	uc003lzu.2	+	11	1536	c.1443G>A	c.(1441-1443)GTG>GTA	p.V481V	WWC1_uc003lzv.2_Silent_p.V481V|WWC1_uc011den.1_Silent_p.V481V|WWC1_uc003lzw.2_Silent_p.V280V	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	481					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		AGAGCAAGGTGGAGTTCCTGC	0.617													14	70					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168114072	168114072	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:168114072C>T	uc003mab.2	-	30	3646	c.3226G>A	c.(3226-3228)GAT>AAT	p.D1076N	SLIT3_uc010jjg.2_Missense_Mutation_p.D1083N	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1076	EGF-like 5.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACACAGTCATCATTGTCTGTC	0.597													14	33					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168150008	168150008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:168150008C>T	uc003mab.2	-	22	2761	c.2341G>A	c.(2341-2343)GAC>AAC	p.D781N	SLIT3_uc010jjg.2_Missense_Mutation_p.D781N	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	781	LRR 18.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGCTCAGGTCACTAGGAAAA	0.413													25	56					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168175381	168175381	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:168175381C>T	uc003mab.2	-	20	2616	c.2196G>A	c.(2194-2196)ATG>ATA	p.M732I	SLIT3_uc010jjg.2_Missense_Mutation_p.M732I	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	732	LRRNT 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCACTGTCTCCATACAGGTGC	0.637													27	58					0	0	1	0	0
CCDC99	54908	broad.mit.edu	37	5	169021419	169021419	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:169021419G>A	uc003mae.3	+	6	982	c.703G>A	c.(703-705)GAT>AAT	p.D235N	CCDC99_uc010jjj.2_Missense_Mutation_p.D164N|CCDC99_uc011deq.1_Missense_Mutation_p.D52N|CCDC99_uc010jjk.2_Intron	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	235	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCAAATCAAGATCTTCAGGT	0.363													23	41					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170221237	170221237	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:170221237G>A	uc003mau.2	+	4	373	c.175G>A	c.(175-177)GAA>AAA	p.E59K	GABRP_uc011dev.1_Missense_Mutation_p.E59K	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	59	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TATCTTAGGAGAACCCGTACA	0.358													16	37					0	0	1	0	0
STC2	8614	broad.mit.edu	37	5	172750341	172750341	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:172750341C>T	uc003mco.1	-	3	1697	c.387G>A	c.(385-387)AGG>AGA	p.R129R	STC2_uc003mcn.1_Silent_p.R44R	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	129					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ACACCATTTCCCTGATGGCCG	0.572													14	16					0	0	1	0	0
FAM153B	202134	broad.mit.edu	37	5	175530300	175530300	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:175530300G>A	uc003mdk.2	+	13	792	c.735G>A	c.(733-735)AAG>AAA	p.K245K		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	245										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		AGGAGGTGAAGGTCAGGCCAA	0.428													32	241					0	0	1	0	0
CDHR2	54825	broad.mit.edu	37	5	176008431	176008431	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:176008431G>A	uc003mem.1	+	17	1972	c.1906G>A	c.(1906-1908)GAC>AAC	p.D636N	CDHR2_uc003men.1_Missense_Mutation_p.D636N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	636	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTTCTCCTTGGACCCTGACAC	0.617													10	26					0	0	1	0	0
UNC5A	90249	broad.mit.edu	37	5	176306731	176306731	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:176306731C>T	uc003mey.2	+	15	2565	c.2373C>T	c.(2371-2373)AGC>AGT	p.S791S		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	791	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCATCTCAGCTTCTTTGCCT	0.706													9	31					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176308361	176308361	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:176308361G>A	uc003mfa.2	-	18	2661	c.2569C>T	c.(2569-2571)CTG>TTG	p.L857L	HK3_uc003mez.2_Silent_p.L413L	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	857	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCTCTTCCAGGCCCCGGTTC	0.667													20	48					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176316461	176316461	+	Missense_Mutation	SNP	C	T	T	rs143604141	byFrequency	TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:176316461C>T	uc003mfa.2	-	8	927	c.835G>A	c.(835-837)GAT>AAT	p.D279N	HK3_uc003mez.2_5'UTR	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	279	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCCCATCATCGCTGAAGGAG	0.652													13	41					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176813289	176813289	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:176813289C>T	uc003mgk.3	+	4	428	c.327C>T	c.(325-327)ACC>ACT	p.T109T		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	109	Helical; Name=M1; (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGATGCTCACCTTCCTCTACC	0.642													26	68					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178140027	178140027	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:178140027G>A	uc003mjj.2	-	5	1050	c.852C>T	c.(850-852)TCC>TCT	p.S284S		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	284	C2H2-type 3.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		GTTTATAAAGGGATGTACTGA	0.378													20	52					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392614	178392614	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:178392614G>A	uc003mjo.1	+	5	1480	c.1209G>A	c.(1207-1209)CGG>CGA	p.R403R	ZNF454_uc010jkz.1_Silent_p.R403R	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	403	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		CACGACATCGGAAAATTCACA	0.428													14	21					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178413566	178413566	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:178413566C>T	uc003mjr.2	-	8	1868	c.1689G>A	c.(1687-1689)AGG>AGA	p.R563R	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.R146R|GRM6_uc003mjs.1_Silent_p.R183R	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	563	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TGGGCGTGGGCCTCATGTCCC	0.701													8	26					0	0	1	0	0
ZNF354C	30832	broad.mit.edu	37	5	178504079	178504079	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:178504079A>G	uc003mju.2	+	4	277	c.162A>G	c.(160-162)CCA>CCG	p.P54P		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	54	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		CAGGGATTCCATTTTCAATGC	0.443													12	24					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178581184	178581184	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:178581184C>T	uc003mjw.2	-	8	1248	c.1248G>A	c.(1246-1248)ATG>ATA	p.M416I	ADAMTS2_uc011dgm.1_Missense_Mutation_p.M416I	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	416	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGTCGTGCTCCATGCCCAGCC	0.692													3	6					0	0	1	0	0
C5orf45	51149	broad.mit.edu	37	5	179268988	179268988	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr5:179268988G>A	uc003mla.2	-	5	412	c.368C>T	c.(367-369)ACA>ATA	p.T123I	C5orf45_uc003mky.2_Missense_Mutation_p.T120I|C5orf45_uc011dgt.1_Missense_Mutation_p.T123I|C5orf45_uc011dgu.1_Missense_Mutation_p.T68I|C5orf45_uc003mlc.2_Missense_Mutation_p.T68I|C5orf45_uc003mlb.2_5'UTR	NM_016175	NP_057259	Q6NTE8	CE045_HUMAN	hypothetical protein LOC51149 isoform 1	123											0						ACACACTCCTGTTCCTTCCAG	0.502													80	209					0	0	1	0	0
DUSP22	56940	broad.mit.edu	37	6	335148	335148	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:335148C>T	uc003msx.2	+	4	612	c.173C>T	c.(172-174)TCA>TTA	p.S58L	DUSP22_uc011dhn.1_Missense_Mutation_p.S58L|DUSP22_uc003msy.1_Missense_Mutation_p.S15L	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	58					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GCAGCGGATTCACCATCTCAA	0.318													7	47					0	0	1	0	0
EXOC2	55770	broad.mit.edu	37	6	599121	599121	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:599121G>A	uc003mtd.2	-	8	981	c.847C>T	c.(847-849)CTT>TTT	p.L283F	EXOC2_uc003mte.2_Missense_Mutation_p.L283F|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	283					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		AGGTTGAAAAGAAACTTAAAT	0.318													29	185					0	0	1	0	0
NRN1	51299	broad.mit.edu	37	6	6002686	6002686	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:6002686C>T	uc003mwu.2	-	2	751	c.100G>A	c.(100-102)GTC>ATC	p.V34I	NRN1_uc003mwt.2_Missense_Mutation_p.V60I	NM_016588	NP_057672	Q9NPD7	NRN1_HUMAN	neuritin precursor	34						anchored to membrane|plasma membrane					0	Ovarian(93;0.0816)	all_hematologic(90;0.151)		OV - Ovarian serous cystadenocarcinoma(45;0.00415)		CCCTTGAAGACCGCATCGCAC	0.647													16	55					0	0	1	0	0
LY86	9450	broad.mit.edu	37	6	6589013	6589013	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:6589013C>T	uc003mwy.1	+	1	80	c.46C>T	c.(46-48)CCC>TCC	p.P16S	LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	16					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					TCTGATTTTTCCCAGCTGCAG	0.552													27	96					0	0	1	0	0
RREB1	6239	broad.mit.edu	37	6	7229506	7229506	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:7229506C>T	uc003mxc.2	+	10	1564	c.1174C>T	c.(1174-1176)CAG>TAG	p.Q392*	RREB1_uc003mxb.2_Nonsense_Mutation_p.Q392*|RREB1_uc010jnx.2_Nonsense_Mutation_p.Q392*	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	392					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCAGGCAATTCAGCTCCAGAC	0.622													19	27					0	0	1	0	0
CAGE1	285782	broad.mit.edu	37	6	7373653	7373653	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:7373653C>T	uc003mxi.2	-	4	1712	c.991G>A	c.(991-993)GCT>ACT	p.A331T	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.A222T|CAGE1_uc003mxk.1_Missense_Mutation_p.A222T	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	467	Potential.										0	Ovarian(93;0.0418)					AAAGCAGAAGCTGTGGCCTTT	0.398													18	57					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7580725	7580725	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:7580725G>A	uc003mxp.1	+	23	4581	c.4302G>A	c.(4300-4302)AAG>AAA	p.K1434K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1434	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AACAGCAAAAGGCCACTGGCT	0.473													16	62					0	0	1	0	0
SNRNP48	154007	broad.mit.edu	37	6	7601599	7601599	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:7601599C>T	uc003mxr.2	+	5	496	c.437C>T	c.(436-438)CCT>CTT	p.P146L	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	146					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						GTTGAAGTTCCTTTGAATCAC	0.323													19	59					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10924846	10924846	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:10924846C>T	uc003mzo.2	+	15	1486	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F	SYCP2L_uc011din.1_Missense_Mutation_p.S238F|SYCP2L_uc010jow.2_Missense_Mutation_p.S17F	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	397						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TCACAAGTTtccattcaagct	0.209													10	14					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12164175	12164175	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:12164175C>T	uc003nac.2	+	9	7817	c.7638C>T	c.(7636-7638)ATC>ATT	p.I2546I	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2546					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GTCTCCAGATCTTGAACATAG	0.542													14	55					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17799553	17799553	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:17799553C>T	uc003ncg.3	-	22	2839	c.2734G>A	c.(2734-2736)GTG>ATG	p.V912M	KIF13A_uc003ncf.2_Missense_Mutation_p.V912M|KIF13A_uc003nch.3_Missense_Mutation_p.V912M|KIF13A_uc003nci.3_Missense_Mutation_p.V912M	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	912					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GGTGAAGGCACCTCGGGGTCC	0.522													3	27					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24450048	24450048	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:24450048G>A	uc003ned.1	-	15	1526	c.1415C>T	c.(1414-1416)CCC>CTC	p.P472L	GPLD1_uc010jpr.1_Missense_Mutation_p.P309L|GPLD1_uc010jps.1_Missense_Mutation_p.P472L	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	472	FG-GAP 2.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						GCCCACCGAGGGAGCTCCCAC	0.612													24	60					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24454285	24454285	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:24454285C>T	uc003ned.1	-	14	1404	c.1293G>A	c.(1291-1293)CTG>CTA	p.L431L	GPLD1_uc010jpr.1_Silent_p.L268L|GPLD1_uc010jps.1_Silent_p.L431L	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	431						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						TGTCCAGGTCCAGGTCAACAG	0.577													22	92					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24563628	24563628	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:24563628C>T	uc011djo.1	-	16	2787	c.2550G>A	c.(2548-2550)TCG>TCA	p.S850S	KIAA0319_uc011djp.1_Silent_p.S805S|KIAA0319_uc003neh.1_Silent_p.S850S|KIAA0319_uc011djq.1_Silent_p.S841S|KIAA0319_uc011djr.1_Silent_p.S850S|KIAA0319_uc010jpt.1_Silent_p.S261S	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	850	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CCTTAATGTCCGAGTCCAGCA	0.587													18	36					0	0	1	0	0
TDP2	51567	broad.mit.edu	37	6	24651099	24651099	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:24651099G>A	uc003nej.2	-	7	1031	c.1006C>T	c.(1006-1008)CTT>TTT	p.L336F	TDP2_uc003nei.2_Missense_Mutation_p.L224F	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	336					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						AATCCAAGAAGGTCCAAACTT	0.388								Direct_reversal_of_damage|Editing_and_processing_nucleases					13	37					0	0	1	0	0
BTN3A3	10384	broad.mit.edu	37	6	26446099	26446099	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:26446099C>T	uc003nhz.2	+	5	781	c.601C>T	c.(601-603)CTG>TTG	p.L201L	BTN3A3_uc003nia.2_Silent_p.L159L|BTN3A3_uc011dkn.1_Silent_p.L159L	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	201	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0						TGGAGTGGGCCTGTATGCAGT	0.562													26	102					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28474134	28474134	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:28474134C>T	uc011dlj.1	-	4	364	c.314G>A	c.(313-315)GGA>GAA	p.G105E	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	105					response to oxidative stress	extracellular region	glutathione peroxidase activity	p.G105*(1)		ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TTCTTGTTTTCCAAACTGGTT	0.463													38	51					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28543161	28543161	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:28543161C>T	uc003nlo.2	-	3	1939	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	441	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGAAAATTCCCTCCCATTG	0.418													19	47					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012883	29012883	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:29012883C>T	uc003nlw.2	-	1	70	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGGATCATCTCCATTTTTGGA	0.408													34	45					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141683	29141683	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:29141683A>T	uc011dlm.1	+	1	373	c.271A>T	c.(271-273)AAG>TAG	p.K91*		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGCCCGGAAAAGACCATCTC	0.473													42	136					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29275343	29275343	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:29275343G>A	uc011dln.1	+	1	877	c.877G>A	c.(877-879)GAT>AAT	p.D293N		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTTACGGAATGATTCCATGAA	0.348													23	81					0	0	1	0	0
OR2H1	26716	broad.mit.edu	37	6	29430347	29430347	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:29430347G>A	uc003nmi.2	+	3	1244	c.801G>A	c.(799-801)GGG>GGA	p.G267G	OR2H1_uc003nmj.1_Silent_p.G267G|OR2H1_uc010jri.1_Silent_p.G189G	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGCCCAAGGGAGGGGCAAGT	0.527													16	98					0	0	1	0	0
GABBR1	2550	broad.mit.edu	37	6	29599253	29599253	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:29599253T>C	uc003nmt.3	-	3	545	c.209A>G	c.(208-210)GAG>GGG	p.E70G	GABBR1_uc003nmu.3_Missense_Mutation_p.E70G|GABBR1_uc011dlr.1_5'UTR|GABBR1_uc011dls.1_Missense_Mutation_p.E70G	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	70	Sushi 1.|Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	CACCTCGCGCTCCCCCCGGCA	0.632													21	109					0	0	1	0	0
ZNRD1	30834	broad.mit.edu	37	6	30029353	30029353	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:30029353G>A	uc003noz.2	+	2	202	c.52G>A	c.(52-54)GAT>AAT	p.D18N	NCRNA00171_uc011dme.1_5'Flank|NCRNA00171_uc003nox.1_5'UTR|NCRNA00171_uc003rto.2_5'Flank|ZNRD1_uc003npa.2_Missense_Mutation_p.D18N	NM_014596	NP_055411	Q9P1U0	RPA12_HUMAN	zinc ribbon domain containing 1	18						nucleolus	DNA-directed RNA polymerase activity|nucleic acid binding|zinc ion binding				0						GTCGGACCTGGATTTCTGTTC	0.537													19	72					0	0	1	0	0
RNF39	80352	broad.mit.edu	37	6	30043420	30043420	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:30043420C>T	uc003npe.2	-	1	209	c.147G>A	c.(145-147)GCG>GCA	p.A49A	RNF39_uc003npd.2_Silent_p.A49A	NM_025236	NP_079512	Q9H2S5	RNF39_HUMAN	ring finger protein 39 isoform 1	49						cytoplasm	zinc ion binding				0						CCTTCGAGCGCGCAGATGGCG	0.672													5	28					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30131682	30131682	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:30131682C>T	uc010jrx.2	+	1	700	c.221C>T	c.(220-222)CCC>CTC	p.P74L	TRIM10_uc003npn.2_5'Flank|TRIM10_uc003npo.3_5'Flank	NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	74					mesodermal cell fate determination	intracellular	zinc ion binding				0						GCCCCTGTGCCCCTGGGCCCG	0.632													12	48					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30136134	30136134	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:30136134G>A	uc010jrx.2	+	3	1014	c.535G>A	c.(535-537)GAG>AAG	p.E179K		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	179	Potential.				mesodermal cell fate determination	intracellular	zinc ion binding				0						GCTGCAGCAGGAGCTGGAGCA	0.522													15	37					0	0	1	0	0
MICA	4276	broad.mit.edu	37	6	31378334	31378334	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31378334C>T	uc003ntk.1	+	2	124	c.85C>T	c.(85-87)CGT>TGT	p.R29C	MICA_uc003rxz.1_5'UTR					RecName: Full=MHC class I polypeptide-related sequence A;          Short=MIC-A; Flags: Precursor;												0		Ovarian(999;0.0253)				CCACAGTCTTCGTTATAACCT	0.507													11	37					0	0	1	0	0
MICB	4277	broad.mit.edu	37	6	31473645	31473645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31473645G>A	uc003ntn.3	+	2	438	c.322G>A	c.(322-324)GGA>AGA	p.G108R	MICB_uc011dnm.1_Missense_Mutation_p.G76R|MICB_uc003nto.3_Missense_Mutation_p.G108R	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	108	Extracellular (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						GGACCAGAAAGGAGGTGAGAG	0.562													12	3					0	0	1	0	0
LY6G6F	259215	broad.mit.edu	37	6	31685450	31685450	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31685450C>T	uc003nwb.1	+	6	1018	c.1018C>T	c.(1018-1020)CCA>TCA	p.P340S	LY6G6D_uc003nwf.1_Missense_Mutation_p.P91S|LY6G6D_uc003nwg.1_Missense_Mutation_p.P70S	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	Error:Variant_position_missing_in_Q5SQ64_after_alignment						integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						CGTGACTTATCCAGCCCACAG	0.597													124	502					0	0	1	0	0
C6orf25	80739	broad.mit.edu	37	6	31691504	31691504	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31691504C>T	uc011doc.1	+	2	150	c.150C>T	c.(148-150)TTC>TTT	p.F50F	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Silent_p.F50F|C6orf25_uc011dod.1_Silent_p.F50F|C6orf25_uc011doe.1_Silent_p.F50F|C6orf25_uc003nwo.2_Silent_p.F50F|C6orf25_uc003nwn.2_Silent_p.F50F	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	50	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						CACCCAGCTTCCCGGCCTGCA	0.692													65	202					0	0	1	0	0
CLIC1	1192	broad.mit.edu	37	6	31698746	31698746	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31698746G>A	uc003nwr.2	-	6	863	c.599C>T	c.(598-600)CCC>CTC	p.P200L	DDAH2_uc003nwp.2_5'Flank|DDAH2_uc003nwq.2_5'Flank|CLIC1_uc003rje.2_Missense_Mutation_p.P200L	NM_001288	NP_001279	O00299	CLIC1_HUMAN	chloride intracellular channel 1	200	GST C-terminal.				signal transduction	brush border|chloride channel complex|cytoplasm|membrane fraction|nuclear membrane|plasma membrane|soluble fraction	protein binding|voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GAAGGCCTCGGGGATGGTGAA	0.572													184	279					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31733693	31733693	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31733693G>A	uc011dog.1	-	16	2704	c.2466C>T	c.(2464-2466)TTC>TTT	p.F822F		NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	822						extracellular region				ovary(3)	3						GGAGCCGGAGGAAAGCATGAG	0.617													73	322					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31736926	31736926	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31736926C>T	uc011dog.1	-	10	1610	c.1372G>A	c.(1372-1374)GAG>AAG	p.E458K	C6orf27_uc003nxd.2_Missense_Mutation_p.E133K|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	458						extracellular region				ovary(3)	3						GACAAGATCTCACGCCGAGCT	0.542													73	323					0	0	1	0	0
SLC44A4	80736	broad.mit.edu	37	6	31838414	31838414	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31838414G>A	uc010jti.2	-	11	1069	c.1003C>T	c.(1003-1005)CGT>TGT	p.R335C	SLC44A4_uc011dol.1_Missense_Mutation_p.R259C|SLC44A4_uc011dom.1_Missense_Mutation_p.R293C	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	335	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	ATGGCAATACGAATCCGCTGC	0.617													33	111					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31997540	31997540	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:31997540C>T	uc011dpd.1	+	29	3925	c.3874C>T	c.(3874-3876)CAG>TAG	p.Q1292*	C4A_uc011dpe.1_Nonsense_Mutation_p.Q1292*	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1292					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						GCTCACCCGTCAGGGCAGCTT	0.647													31	127					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32021274	32021274	+	Silent	SNP	C	T	T	rs56407830		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:32021274C>T	uc003nzl.2	-	25	8878	c.8676G>A	c.(8674-8676)GAG>GAA	p.E2892E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2941	Fibronectin type-III 21.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGACCCCGTCCTCGTGCCCCG	0.637													148	634					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32184818	32184818	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:32184818C>T	uc003obb.2	-	11	1904	c.1765G>A	c.(1765-1767)GAG>AAG	p.E589K	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.E589K	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	589	EGF-like 15; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TCATCCACCTCTGTTTGACAG	0.597													98	325					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190842	32190842	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:32190842G>A	uc003obb.2	-	2	234	c.95C>T	c.(94-96)CCA>CTA	p.P32L	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.P32L	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	32	Extracellular (Potential).|EGF-like 1.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACAGGGTTCTGGGAAACTCCC	0.537													62	220					0	0	1	0	0
HLA-DRB5	3127	broad.mit.edu	37	6	32487202	32487202	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:32487202A>G	uc003obj.2	-	3	602	c.597T>C	c.(595-597)GTT>GTC	p.V199V	HLA-DRB1_uc011dqa.1_Intron|HLA-DRB5_uc003obk.3_Silent_p.V199V	NM_002125	NP_002116	Q30154	DRB5_HUMAN	major histocompatibility complex, class II, DR	199	Ig-like C1-type.|Beta-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						GGCAGGTGTAAACCTCTCCAC	0.527													85	100					0	0	1	0	0
IP6K3	117283	broad.mit.edu	37	6	33694681	33694681	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:33694681G>A	uc010jvf.2	-	5	952	c.416C>T	c.(415-417)CCG>CTG	p.P139L	IP6K3_uc003ofb.2_Missense_Mutation_p.P139L	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	139					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						AGCCTTGGCCGGGCTGCGGCG	0.627													19	89					0	0	1	0	0
PACSIN1	29993	broad.mit.edu	37	6	34497502	34497502	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:34497502G>A	uc003ojo.2	+	6	878	c.672G>A	c.(670-672)ATG>ATA	p.M224I	PACSIN1_uc003ojp.2_Missense_Mutation_p.M224I	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	224					endocytosis		protein kinase activity				0						CCCAGTACATGGAGAACATGG	0.542													17	22					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35610568	35610568	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:35610568C>T	uc011dte.1	-	2	237	c.34G>A	c.(34-36)GAA>AAA	p.E12K	FKBP5_uc003okx.2_Missense_Mutation_p.E12K|FKBP5_uc011dtf.1_Intron|FKBP5_uc003oky.2_Missense_Mutation_p.E12K|FKBP5_uc003okz.2_Missense_Mutation_p.E12K	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	12					protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						GTGGGGCTTTCTTCATTGTTC	0.403													46	167					0	0	1	0	0
FRS3	10817	broad.mit.edu	37	6	41738772	41738772	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:41738772G>A	uc003orc.1	-	7	1308	c.1064C>T	c.(1063-1065)CCC>CTC	p.P355L		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	355					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			ATTGGAAGAGGGTGTGAGCCC	0.652													54	51					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42236589	42236589	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:42236589C>T	uc003osd.2	-	5	1303	c.740G>A	c.(739-741)GGA>GAA	p.G247E	TRERF1_uc011duq.1_Missense_Mutation_p.G247E|TRERF1_uc003osb.2_Missense_Mutation_p.G86E|TRERF1_uc003osc.2_Missense_Mutation_p.G86E|TRERF1_uc003ose.2_Missense_Mutation_p.G247E	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	247	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TGGCTGTCCTCCCTGCACTGG	0.602													11	75					0	0	1	0	0
SLC29A1	2030	broad.mit.edu	37	6	44197655	44197655	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:44197655C>T	uc003owu.1	+	5	655	c.326C>T	c.(325-327)TCC>TTC	p.S109F	SLC29A1_uc011dvp.1_Missense_Mutation_p.S128F|SLC29A1_uc003owv.1_Missense_Mutation_p.S109F|SLC29A1_uc003oww.1_Missense_Mutation_p.S188F|SLC29A1_uc011dvq.1_Missense_Mutation_p.S151F|SLC29A1_uc003owx.1_Missense_Mutation_p.S109F|SLC29A1_uc003owy.1_Missense_Mutation_p.S109F|SLC29A1_uc003owz.1_Missense_Mutation_p.S109F	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	109	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	ATCCCCCAGTCCGTACGGATC	0.622													11	40					0	0	1	0	0
CLIC5	53405	broad.mit.edu	37	6	45917016	45917016	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:45917016C>T	uc003oxv.3	-	3	859	c.753G>A	c.(751-753)CTG>CTA	p.L251L	CLIC5_uc003oxu.3_Silent_p.L92L|CLIC5_uc003oxx.2_Silent_p.L92L	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	251					female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						AGGTCTCCTCCAGGAACTCCT	0.532													22	158					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46801057	46801057	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:46801057G>A	uc010jzh.1	+	11	1433	c.1391G>A	c.(1390-1392)GGA>GAA	p.G464E	MEP1A_uc011dwg.1_Missense_Mutation_p.G186E|MEP1A_uc011dwh.1_Missense_Mutation_p.G492E|MEP1A_uc011dwi.1_Missense_Mutation_p.G364E	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	464	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AATTCGGAGGGATATGGTTTT	0.493													20	93					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51920487	51920487	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:51920487C>T	uc003pah.1	-	19	2010	c.1734G>A	c.(1732-1734)GGG>GGA	p.G578G	PKHD1_uc003pai.2_Silent_p.G578G	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	578	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AGGGCTCCGTCCCACTGGTGA	0.527													9	36					0	0	1	0	0
GSTA2	2939	broad.mit.edu	37	6	52615459	52615459	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:52615459C>T	uc003pay.2	-	7	735	c.585G>A	c.(583-585)AAG>AAA	p.K195K		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	195	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	GTAGAAACTTCTTCACTGTGG	0.453													25	86					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54208096	54208096	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:54208096G>A	uc003pcj.2	+	5	843	c.697G>A	c.(697-699)GGC>AGC	p.G233S	TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	233					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			ATGGACTCATGGCCCATTGGA	0.388													17	33					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55128600	55128600	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:55128600C>T	uc003pcl.2	+	4	1057	c.742C>T	c.(742-744)CGC>TGC	p.R248C	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R183C	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	248	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCAAATATTTCGCAAACTCTG	0.373													10	15					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62604712	62604712	+	Missense_Mutation	SNP	G	A	A	rs139228211		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:62604712G>A	uc003peg.2	-	6	885	c.638C>T	c.(637-639)CCC>CTC	p.P213L		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	213	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		AGGTGGTGGGGGAGGAGGAAT	0.547													13	46					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69348921	69348921	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:69348921C>T	uc003pev.3	+	3	802	c.354C>T	c.(352-354)TTC>TTT	p.F118F	BAI3_uc010kak.2_Silent_p.F118F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	118	CUB.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGAATGCTTTCGTTTTTCTAC	0.308													6	18					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72970443	72970443	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:72970443G>A	uc003pga.2	+	19	3166	c.3089G>A	c.(3088-3090)CGA>CAA	p.R1030Q	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Missense_Mutation_p.R656Q|RIMS1_uc010kaq.2_Missense_Mutation_p.R503Q|RIMS1_uc011dyc.1_Missense_Mutation_p.R504Q|RIMS1_uc010kar.2_Missense_Mutation_p.R423Q|RIMS1_uc011dyd.1_Missense_Mutation_p.R489Q|RIMS1_uc003pgf.2_Missense_Mutation_p.R246Q|RIMS1_uc003pgg.2_Missense_Mutation_p.R247Q|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Missense_Mutation_p.R246Q|RIMS1_uc003pgd.2_Missense_Mutation_p.R247Q|RIMS1_uc003pge.2_Missense_Mutation_p.R247Q|RIMS1_uc011dye.1_Missense_Mutation_p.R9Q|RIMS1_uc011dyf.1_Missense_Mutation_p.R9Q|RIMS1_uc003pgb.3_Missense_Mutation_p.R656Q|RIMS1_uc010kas.1_Missense_Mutation_p.R489Q	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1030					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AAACGAGGACGAAGTGCAGAA	0.443													5	13					0	0	1	0	0
CD109	135228	broad.mit.edu	37	6	74519768	74519768	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:74519768C>T	uc003php.2	+	27	3842	c.3417C>T	c.(3415-3417)TCC>TCT	p.S1139S	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Silent_p.S1139S|CD109_uc010kba.2_Silent_p.S1062S	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1139						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						AGCCACGCTCCCTGGATATTG	0.448													10	12					0	0	1	0	0
NT5E	4907	broad.mit.edu	37	6	86181124	86181124	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:86181124C>T	uc003pko.3	+	3	1288	c.732C>T	c.(730-732)TCC>TCT	p.S244S	NT5E_uc003pkn.2_Silent_p.S244S|NT5E_uc010kbr.2_Silent_p.S244S	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	244					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	GAGGACACTCCAACACATTTC	0.428													15	24					0	0	1	0	0
FUT9	10690	broad.mit.edu	37	6	96651560	96651560	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:96651560C>T	uc003pop.3	+	3	870	c.529C>T	c.(529-531)CCC>TCC	p.P177S		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	177	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AAGCACAAATCCCTTCGTGTT	0.458													13	15					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100368843	100368843	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:100368843C>T	uc003pqh.1	-	6	1311	c.996G>A	c.(994-996)ATG>ATA	p.M332I	MCHR2_uc003pqi.1_Missense_Mutation_p.M332I	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	332	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		GAGTGTTTCCCATATTGTTGA	0.408													22	47					0	0	1	0	0
BEND3	57673	broad.mit.edu	37	6	107391735	107391735	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:107391735G>A	uc003prs.2	-	5	1310	c.660C>T	c.(658-660)CTC>CTT	p.L220L		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	220										ovary(3)	3						CCTCAAGGGAGAGCAGGTCCA	0.567													9	24					0	0	1	0	0
FRK	2444	broad.mit.edu	37	6	116264264	116264264	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:116264264T>C	uc003pwi.1	-	7	1672	c.1225A>G	c.(1225-1227)AAA>GAA	p.K409E		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	409	Protein kinase.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		ATGCTGAATTTATTACTACGA	0.373													6	15					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117706953	117706953	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:117706953C>T	uc003pxp.1	-	15	2396	c.2197G>A	c.(2197-2199)GGG>AGG	p.G733R	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	733	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATATCCGTCCCATTCAGCAGC	0.458			T	GOPC|ROS1	glioblastoma|NSCLC								17	41					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119510900	119510900	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:119510900C>T	uc003pym.1	-	10	1917	c.1475G>A	c.(1474-1476)GGC>GAC	p.G492D		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	492	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TTGGGCCATGCCTTCGGGAGC	0.532													23	46					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132171137	132171137	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:132171137T>C	uc011ecf.1	+	3	341	c.321T>C	c.(319-321)AGT>AGC	p.S107S		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	107	SMB 1.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	CAGTTAAAAGTTGCAAAGGTC	0.383													16	21					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139591716	139591716	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:139591716C>G	uc011eds.1	-	4	729	c.564G>C	c.(562-564)AAG>AAC	p.K188N		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	188	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		GTACCTGTTTCTTTTGGAGGA	0.448													11	31					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143081249	143081249	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:143081249G>A	uc003qjd.2	-	9	6919	c.6176C>T	c.(6175-6177)TCA>TTA	p.S2059L		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2059	10 X 4 AA tandem repeats of S-P-[RGMKC]- [RK].|2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CCTCTTTGGTGAATTATCTCG	0.473													30	51					0	0	1	0	0
PEX3	8504	broad.mit.edu	37	6	143795941	143795941	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:143795941C>T	uc003qjl.2	+	9	1028	c.766C>T	c.(766-768)CGA>TGA	p.R256*		NM_003630	NP_003621	P56589	PEX3_HUMAN	peroxisomal biogenesis factor 3	256	Cytoplasmic (Potential).				protein import into peroxisome membrane|transmembrane transport	integral to peroxisomal membrane	protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.73e-06)|GBM - Glioblastoma multiforme(68;0.0117)		ACTTTCTCCTCGAGACATTAC	0.333													17	36					0	0	1	0	0
IYD	389434	broad.mit.edu	37	6	150710649	150710649	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:150710649G>C	uc003qnu.1	+	2	480	c.340G>C	c.(340-342)GAA>CAA	p.E114Q	IYD_uc003qnv.1_Missense_Mutation_p.E114Q|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Missense_Mutation_p.E114Q|IYD_uc010kik.1_Intron	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	114	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		AGTCCCAATGGAAGTCATTGA	0.403													19	54					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152470621	152470621	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:152470621G>A	uc010kiw.2	-	136	25235	c.24633C>T	c.(24631-24633)ATC>ATT	p.I8211I	SYNE1_uc010kiv.2_Silent_p.I2735I|SYNE1_uc003qos.3_Silent_p.I2735I|SYNE1_uc003qot.3_Silent_p.I8140I|SYNE1_uc003qou.3_Silent_p.I8211I|SYNE1_uc003qop.3_Silent_p.I373I|SYNE1_uc011eez.1_Silent_p.I413I|SYNE1_uc003qoq.3_Silent_p.I413I|SYNE1_uc003qor.3_Silent_p.I1111I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8211	Spectrin 30.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGGCAGGCGGATCAGTTTCT	0.408										HNSCC(10;0.0054)			25	43					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152737871	152737871	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:152737871C>T	uc010kiw.2	-	41	6303	c.5701G>A	c.(5701-5703)GAG>AAG	p.E1901K	SYNE1_uc003qot.3_Missense_Mutation_p.E1908K|SYNE1_uc003qou.3_Missense_Mutation_p.E1901K|SYNE1_uc010kjb.1_Missense_Mutation_p.E1884K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1901	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AAATCAGACTCGTTCTTATTC	0.473										HNSCC(10;0.0054)			11	32					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152768620	152768620	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:152768620G>A	uc010kiw.2	-	29	4244	c.3642C>T	c.(3640-3642)TTC>TTT	p.F1214F	SYNE1_uc003qot.3_Silent_p.F1221F|SYNE1_uc003qou.3_Silent_p.F1214F|SYNE1_uc010kjb.1_Silent_p.F1197F|SYNE1_uc003qow.2_Silent_p.F509F|SYNE1_uc003qox.1_Silent_p.F730F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1214	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAAGAGCCTTGAAAGAGCTGG	0.453										HNSCC(10;0.0054)			11	26					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152804247	152804247	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:152804247C>T	uc010kiw.2	-	14	1925	c.1323G>A	c.(1321-1323)ACG>ACA	p.T441T	SYNE1_uc003qot.3_Silent_p.T448T|SYNE1_uc003qou.3_Silent_p.T441T|SYNE1_uc010kjb.1_Silent_p.T424T|SYNE1_uc003qpa.1_Silent_p.T441T|SYNE1_uc003qox.1_5'UTR	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	441	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCGTTGTATCGTGTTTGCTG	0.502										HNSCC(10;0.0054)			48	172					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412121	154412121	+	Silent	SNP	A	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:154412121A>C	uc003qpr.2	+	3	915	c.678A>C	c.(676-678)CCA>CCC	p.P226P	OPRM1_uc011efc.1_Silent_p.P145P|OPRM1_uc011efd.1_Silent_p.P126P|OPRM1_uc011efe.1_Silent_p.P319P|OPRM1_uc003qpn.2_Silent_p.P226P|OPRM1_uc003qpo.1_Silent_p.P226P|OPRM1_uc011eff.1_Silent_p.P226P|OPRM1_uc011efg.1_Silent_p.P226P|OPRM1_uc011efh.1_Silent_p.P226P|OPRM1_uc003qpq.1_Silent_p.P226P|OPRM1_uc003qpt.1_Silent_p.P226P|OPRM1_uc011efi.1_Silent_p.P226P|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Silent_p.P126P|OPRM1_uc003qpu.2_Silent_p.P126P	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	226	Extracellular (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	TCTCTCATCCAACCTGGTACT	0.383													26	70					0	0	1	0	0
IPCEF1	26034	broad.mit.edu	37	6	154520815	154520815	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:154520815C>T	uc003qpx.2	-	10	1050	c.894G>A	c.(892-894)AAG>AAA	p.K298K	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpv.2_Silent_p.K169K|IPCEF1_uc003qpw.2_Silent_p.K299K|IPCEF1_uc010kjh.2_Silent_p.K299K	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	298					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TGTCCATGATCTTTGATCCAG	0.323													10	50					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155500260	155500260	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:155500260G>A	uc003qqb.2	+	13	3884	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	TIAM2_uc003qqe.2_Missense_Mutation_p.E871K|TIAM2_uc010kjj.2_Missense_Mutation_p.E404K|TIAM2_uc003qqf.2_Missense_Mutation_p.E247K|TIAM2_uc011efl.1_Missense_Mutation_p.E207K|TIAM2_uc003qqg.2_Missense_Mutation_p.E183K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	871	RBD.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TGCACCATATGAATATATGCA	0.388													12	29					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155764464	155764464	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:155764464G>A	uc003qqm.2	-	5	532	c.429C>T	c.(427-429)TCC>TCT	p.S143S		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	143	Ferric oxidoreductase.|Extracellular (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		TGCCCAGCTTGGAAAGTGCGG	0.572													13	43					0	0	1	0	0
ZDHHC14	79683	broad.mit.edu	37	6	158093791	158093791	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:158093791C>T	uc003qqt.2	+	9	1601	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	ZDHHC14_uc003qqs.2_Intron|ZDHHC14_uc010kjn.2_Silent_p.F23F	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	368						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		GCACCAAATTCGTTTTGCAGG	0.542													15	19					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159653205	159653205	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:159653205T>A	uc010kjv.2	+	11	1861	c.1661T>A	c.(1660-1662)ATG>AAG	p.M554K	FNDC1_uc010kjw.1_Missense_Mutation_p.M439K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	554						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GACTCGCCCATGTCACCCTCA	0.632													8	17					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159653325	159653325	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:159653325G>A	uc010kjv.2	+	11	1981	c.1781G>A	c.(1780-1782)AGG>AAG	p.R594K	FNDC1_uc010kjw.1_Missense_Mutation_p.R479K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	594						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CTGCCCCGAAGGGAAGGCGTA	0.701													6	7					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159654399	159654399	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:159654399T>C	uc010kjv.2	+	11	3055	c.2855T>C	c.(2854-2856)GTT>GCT	p.V952A	FNDC1_uc010kjw.1_Missense_Mutation_p.V837A	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	952						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCTCAGGATGTTCAACAGAGC	0.622													5	15					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161007581	161007581	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:161007581C>T	uc003qtl.2	-	26	4149	c.4029G>A	c.(4027-4029)TGG>TGA	p.W1343*		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3851	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGCAGTACTCCCATCTGACAC	0.502													25	44					0	0	1	0	0
FGFR1OP	11116	broad.mit.edu	37	6	167424307	167424307	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:167424307C>T	uc003qvj.2	+	6	530	c.445C>T	c.(445-447)CTT>TTT	p.L149F	CCR6_uc003qvl.2_5'UTR|FGFR1OP_uc011egp.1_Intron|FGFR1OP_uc003qvk.2_Missense_Mutation_p.L149F	NM_007045	NP_008976	O95684	FR1OP_HUMAN	FGFR1 oncogene partner isoform a	149					G2/M transition of mitotic cell cycle|microtubule anchoring|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell proliferation	centrosome|cytosol|nucleus|perinuclear region of cytoplasm	protein homodimerization activity|protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(1)	1		Breast(66;1.48e-05)|Ovarian(120;0.0607)		OV - Ovarian serous cystadenocarcinoma(33;1.73e-19)|BRCA - Breast invasive adenocarcinoma(81;5.1e-06)|GBM - Glioblastoma multiforme(31;0.00231)		ttaGGGTGCACTTGATCTATC	0.313			T	FGFR1	MPD|NHL								3	11					0	0	1	0	0
THBS2	7058	broad.mit.edu	37	6	169641872	169641872	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:169641872C>T	uc003qwt.2	-	6	1124	c.876G>A	c.(874-876)GAG>GAA	p.E292E		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	292					cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		TCTTGAGGTTCTCGCTGAGCT	0.647													18	66					0	0	1	0	0
THBS2	7058	broad.mit.edu	37	6	169648930	169648930	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:169648930G>A	uc003qwt.2	-	4	439	c.191C>T	c.(190-192)CCA>CTA	p.P64L		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	64	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		GTTCACCGGTGGGATGTAGTC	0.607													20	42					0	0	1	0	0
DLL1	28514	broad.mit.edu	37	6	170593060	170593060	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:170593060G>A	uc003qxm.2	-	9	1777	c.1307C>T	c.(1306-1308)TCG>TTG	p.S436L		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	436	Extracellular (Potential).|EGF-like 6.				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		GTGCCTCCCCGAGAAGCCGGC	0.642													4	6					0	0	1	0	0
FAM120B	84498	broad.mit.edu	37	6	170627021	170627021	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr6:170627021T>G	uc003qxp.2	+	2	651	c.543T>G	c.(541-543)GAT>GAG	p.D181E	FAM120B_uc003qxo.1_Missense_Mutation_p.D181E|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	181					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		AAGACACTGATTACCTAATCT	0.488													25	69					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1522302	1522302	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:1522302G>A	uc003skn.2	-	27	3684	c.3583C>T	c.(3583-3585)CCG>TCG	p.P1195S	INTS1_uc003skp.1_3'UTR	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1195					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TTCTCCTCCGGAAACCAGATG	0.637													23	62					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1542573	1542573	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:1542573G>A	uc003skn.2	-	3	414	c.313C>T	c.(313-315)CCG>TCG	p.P105S	INTS1_uc003skq.2_Missense_Mutation_p.P105S	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	105					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TTAATCGACGGAGAAATGGCT	0.577													32	80					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11101606	11101606	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:11101606G>A	uc003sry.1	+	16	2983	c.2548G>A	c.(2548-2550)GAG>AAG	p.E850K	PHF14_uc011jxi.1_Missense_Mutation_p.E565K|PHF14_uc003srz.2_Missense_Mutation_p.E850K|PHF14_uc011jxj.1_Missense_Mutation_p.E565K	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	850							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		AGTTCCTAGAGAGAGAAGACA	0.353													6	7					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14620490	14620490	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:14620490C>T	uc003ssz.2	-	18	1796	c.1609G>A	c.(1609-1611)GGA>AGA	p.G537R	DGKB_uc011jxt.1_Missense_Mutation_p.G518R|DGKB_uc003sta.2_Missense_Mutation_p.G537R|DGKB_uc011jxu.1_Missense_Mutation_p.G536R	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	537	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GCTTTACCTCCTCCCCATCGC	0.428													9	32					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18801810	18801810	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:18801810G>A	uc003suh.2	+	14	2106	c.2065G>A	c.(2065-2067)GAA>AAA	p.E689K	HDAC9_uc003sue.2_Missense_Mutation_p.E689K|HDAC9_uc011jyd.1_Missense_Mutation_p.E689K|HDAC9_uc003sui.2_Missense_Mutation_p.E692K|HDAC9_uc003suj.2_Missense_Mutation_p.E648K|HDAC9_uc003sua.1_Missense_Mutation_p.E667K	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	689	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CAGCCTGGAGGAAATACAGCT	0.483													4	22					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21781647	21781647	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:21781647C>T	uc003svc.2	+	50	8069	c.8038C>T	c.(8038-8040)CCA>TCA	p.P2680S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2680	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGCATTTGCTCCATCAATTCT	0.403									Kartagener_syndrome				38	90					0	0	1	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22206747	22206747	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:22206747G>A	uc011jym.1	-	2	389	c.315C>T	c.(313-315)TTC>TTT	p.F105F	RAPGEF5_uc003svg.2_Silent_p.F255F			Q92565	RPGF5_HUMAN	Synthetic construct DNA, clone: pF1KSDA0277, Homo sapiens RAPGEF5 gene for Rap guanine nucleotide exchange factor 5, complete cds, without stop codon, in Flexi system.	105	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						ACGTGAGAAGGAAGTCATCCA	0.458													5	19					0	0	1	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23385559	23385559	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:23385559G>A	uc003swg.2	-	8	1207	c.941C>T	c.(940-942)CCA>CTA	p.P314L	IGF2BP3_uc003swf.2_5'UTR	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	314	KH 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						GAGCACTCACGGAGATATCGT	0.373													14	47					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24663366	24663366	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:24663366G>A	uc003swx.2	+	3	379	c.80G>A	c.(79-81)GGA>GAA	p.G27E	MPP6_uc003swy.2_Missense_Mutation_p.G27E	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	27	L27 1.				protein complex assembly		protein binding				0						TTCCTCAAGGGAATTATGGAG	0.348													8	36					0	0	1	0	0
C7orf31	136895	broad.mit.edu	37	7	25194660	25194660	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:25194660C>T	uc003sxn.1	-	6	1126	c.565G>A	c.(565-567)GCT>ACT	p.A189T	C7orf31_uc003sxm.1_Missense_Mutation_p.A31T	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	189											0						GAATCATAAGCCTTGGTTGGC	0.453													16	25					0	0	1	0	0
CPVL	54504	broad.mit.edu	37	7	29111997	29111997	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:29111997G>A	uc003szv.2	-	8	771	c.652C>T	c.(652-654)CAT>TAT	p.H218Y	CPVL_uc003szw.2_Missense_Mutation_p.H218Y|CPVL_uc003szx.2_Missense_Mutation_p.H218Y	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	218					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						TTGAGGGAATGGATGAGGTGT	0.433													13	33					0	0	1	0	0
CRHR2	1395	broad.mit.edu	37	7	30694695	30694696	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:30694695_30694696CC>TT	uc003tbn.2	-	11	1298_1299	c.1054_1055GG>AA	c.(1054-1056)GGT>AAT	p.G352N	CRHR2_uc010kvw.1_Missense_Mutation_p.G352N|CRHR2_uc010kvx.1_Missense_Mutation_p.G351N|CRHR2_uc010kvy.1_Missense_Mutation_p.G188N|CRHR2_uc003tbo.2_Missense_Mutation_p.G338N|CRHR2_uc003tbp.2_Missense_Mutation_p.G379N	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	352	Helical; Name=7; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						CACGAAGAAACCCTGGAAAGGA	0.594													6	16					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31917638	31917638	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:31917638C>T	uc003tcm.1	-	5	906	c.437G>A	c.(436-438)CGG>CAG	p.R146Q	PDE1C_uc003tcn.1_Missense_Mutation_p.R146Q|PDE1C_uc003tco.1_Missense_Mutation_p.R206Q|PDE1C_uc003tcr.2_Missense_Mutation_p.R146Q|PDE1C_uc003tcs.2_Missense_Mutation_p.R146Q	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	146					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GTTTGATGTCCGTCTATACAT	0.343													9	23					0	0	1	0	0
C7orf10	79783	broad.mit.edu	37	7	40900030	40900030	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:40900030C>T	uc003thn.1	+	14	1314	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	C7orf10_uc003thm.1_Silent_p.I419I|C7orf10_uc003tho.1_Silent_p.I375I|C7orf10_uc003thp.1_RNA	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	430							transferase activity			ovary(2)	2						ACAGGGCCATCGGGGAGCTGC	0.562													23	77					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43594360	43594360	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:43594360G>T	uc003tid.1	+	29	5285	c.4680G>T	c.(4678-4680)GAG>GAT	p.E1560D	HECW1_uc011kbi.1_Missense_Mutation_p.E1526D	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1560	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TCTGCATAGAGAAATGGGGGA	0.532													8	30					1.12685e-05	1.13591e-05	1	1	0
GCK	2645	broad.mit.edu	37	7	44187426	44187426	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:44187426C>T	uc003tkl.2	-	7	1156	c.686G>A	c.(685-687)GGC>GAC	p.G229D	GCK_uc003tkh.1_5'Flank|GCK_uc003tki.1_5'Flank|GCK_uc003tkj.1_Missense_Mutation_p.G228D|GCK_uc003tkk.1_Missense_Mutation_p.G230D	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	229					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GGCATTGCAGCCCGTGCCTGG	0.677													68	190					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44555466	44555466	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:44555466G>A	uc003tlb.2	-	19	3869	c.3813C>T	c.(3811-3813)CTC>CTT	p.L1271L	NPC1L1_uc003tlc.2_Silent_p.L1244L|NPC1L1_uc011kbw.1_Silent_p.L1198L|NPC1L1_uc003tla.2_Intron	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1271	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GAGTGATCAGGAGGTTGAGGC	0.592													12	37					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44560646	44560646	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:44560646G>A	uc003tlb.2	-	13	3081	c.3025C>T	c.(3025-3027)CAT>TAT	p.H1009Y	NPC1L1_uc003tlc.2_Missense_Mutation_p.H1009Y|NPC1L1_uc011kbw.1_Missense_Mutation_p.H963Y|NPC1L1_uc003tla.2_Missense_Mutation_p.H12Y	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1009	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGATACTTATGGAACTGCTCC	0.557													36	107					0	0	1	0	0
IGFBP1	3484	broad.mit.edu	37	7	45930215	45930215	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:45930215C>T	uc003tnp.2	+	2	711	c.418C>T	c.(418-420)CTG>TTG	p.L140L	IGFBP1_uc003tno.3_Silent_p.L140L|IGFBP1_uc010kyn.2_Silent_p.L140L	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	140						extracellular space	insulin-like growth factor binding			lung(1)	1						TAATTTCCATCTGATGGCCCC	0.512											OREG0018048	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	76					0	0	1	0	0
GRB10	2887	broad.mit.edu	37	7	50660663	50660663	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:50660663G>A	uc003tpi.2	-	16	1802	c.1771C>T	c.(1771-1773)CGA>TGA	p.R591*	GRB10_uc003tph.3_Nonsense_Mutation_p.R533*|GRB10_uc003tpj.2_Nonsense_Mutation_p.R545*|GRB10_uc003tpk.2_Nonsense_Mutation_p.R591*|GRB10_uc010kzb.2_Nonsense_Mutation_p.R533*|GRB10_uc003tpl.2_Nonsense_Mutation_p.R585*|GRB10_uc003tpm.2_Nonsense_Mutation_p.R533*|GRB10_uc003tpn.2_Nonsense_Mutation_p.R533*	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	591					insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					AAGGCCACTCGGATGCAGTGG	0.517									Russell-Silver_syndrome				19	74					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51096710	51096710	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:51096710G>A	uc003tpr.3	-	10	2268	c.2083C>T	c.(2083-2085)CCA>TCA	p.P695S	COBL_uc003tps.2_Missense_Mutation_p.P752S|COBL_uc011kcl.1_Missense_Mutation_p.P695S|COBL_uc003tpp.3_Missense_Mutation_p.P481S|COBL_uc003tpq.3_Missense_Mutation_p.P636S|COBL_uc003tpo.3_Missense_Mutation_p.P237S	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	695										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTTTTCCCTGGGTTTTGGCCT	0.488													21	46					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617644	54617644	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:54617644G>A	uc010kzf.2	+	4	820	c.415G>A	c.(415-417)GAA>AAA	p.E139K	VSTM2A_uc010kze.2_Missense_Mutation_p.E139K|VSTM2A_uc003tqc.3_Missense_Mutation_p.E139K	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	139	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GGAGCTTCAGGAACACAAGGC	0.522													3	12					0	0	1	0	0
LOC442308	442308	broad.mit.edu	37	7	55713503	55713503	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:55713503C>T	uc010kzj.2	+	1		c.192C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						CTCATGCGATCCTGGTGGATC	0.542													12	50					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55863673	55863673	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:55863673G>C	uc003tqz.2	-	10	1349	c.1232C>G	c.(1231-1233)GCT>GGT	p.A411G		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	411	Potential.				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTCGGAGGCAGCTTTCATTTT	0.383													22	63					0	0	1	0	0
ZNF727	442319	broad.mit.edu	37	7	63538351	63538351	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:63538351A>G	uc011kdm.1	+	4	1103	c.924A>G	c.(922-924)GGA>GGG	p.G308G		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	308					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCATACTGGAGAGAAACCCT	0.373													2	1					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63667602	63667602	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:63667602C>T	uc011kdn.1	+	1	22	c.22C>T	c.(22-24)CCT>TCT	p.P8S		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACCGGGACCCCCTGGAAGCCG	0.562													11	23					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63667612	63667612	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:63667612G>A	uc011kdn.1	+	1	32	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGGAAGCCGAGAAATGGTG	0.577													11	24					0	0	1	0	0
ZNF679	168417	broad.mit.edu	37	7	63709527	63709527	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:63709527G>A	uc003tsx.2	+	2	301	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCTGGAAGCCGAGAAATGGTG	0.572													11	31					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130513	71130513	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:71130513C>T	uc003tvy.2	+	7	1198	c.1198C>T	c.(1198-1200)CGC>TGC	p.R400C	WBSCR17_uc003tvz.2_Missense_Mutation_p.R99C	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	400	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GAATGCTCTTCGCGTTGCTGA	0.537													20	63					0	0	1	0	0
POM121	9883	broad.mit.edu	37	7	72413369	72413369	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:72413369C>T	uc003twk.2	+	11	2837	c.2837C>T	c.(2836-2838)CCC>CTC	p.P946L	POM121_uc003twj.2_Missense_Mutation_p.P681L|POM121_uc010lam.1_Missense_Mutation_p.P681L	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	946	Thr-rich.|Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACGAGCACCCCCACGTTCAAC	0.647													9	48					0	0	1	0	0
NCF1B	654816	broad.mit.edu	37	7	72639959	72639959	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:72639959C>T	uc011kes.1	+	3	194	c.190C>T	c.(190-192)CAC>TAC	p.H64Y	FKBP6_uc003twz.2_Intron|NCF1B_uc011ker.1_Missense_Mutation_p.H66Y	NM_000265	NP_000256			neutrophil cytosolic factor 1												0						CGCCGAGAACCACCAGGGCAC	0.647													6	32					0	0	1	0	0
STX1A	6804	broad.mit.edu	37	7	73117299	73117299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:73117299G>A	uc003tyx.2	-	8	581	c.554C>T	c.(553-555)TCC>TTC	p.S185F	WBSCR22_uc003tyw.1_Intron|STX1A_uc003tyy.2_Missense_Mutation_p.S185F|STX1A_uc010lbj.1_Missense_Mutation_p.S185F	NM_004603	NP_004594	Q16623	STX1A_HUMAN	syntaxin 1A isoform 1	185	Cytoplasmic (Potential).				energy reserve metabolic process|glutamate secretion|intracellular protein transport|regulation of insulin secretion	cell junction|extracellular region|integral to membrane|neuron projection|synaptic vesicle membrane|synaptosome	SNAP receptor activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CGAGATGCTGGAGTCCATGAT	0.622													11	19					0	0	1	0	0
ABHD11	83451	broad.mit.edu	37	7	73151288	73151288	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:73151288A>G	uc003tzb.2	-	5	843	c.786T>C	c.(784-786)TTT>TTC	p.F262F	RFC2_uc011kfa.1_Intron|ABHD11_uc011kfb.1_Silent_p.F205F|ABHD11_uc003tzc.2_Silent_p.F255F|ABHD11_uc003tza.2_Silent_p.F149F	NM_148912	NP_683710	Q8NFV4	ABHDB_HUMAN	abhydrolase domain containing 11 isoform 1	262							hydrolase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CACCAAGGAGAAAGAGTGTTG	0.592													26	84					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73944162	73944162	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:73944162C>T	uc003uaq.2	+	9	1582	c.1189C>T	c.(1189-1191)CCC>TCC	p.P397S	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.P429S|GTF2IRD1_uc003uap.2_Missense_Mutation_p.P397S|GTF2IRD1_uc003uar.1_Missense_Mutation_p.P397S	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	397	GTF2I-like 2.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GGACAAGATCCCCTTCAAGCG	0.597													9	34					0	0	1	0	0
DTX2	113878	broad.mit.edu	37	7	76126736	76126736	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:76126736C>T	uc003uff.3	+	7	1648	c.1092C>T	c.(1090-1092)TCC>TCT	p.S364S	DTX2_uc011kgk.1_Silent_p.S273S|DTX2_uc003ufg.3_Silent_p.S364S|DTX2_uc003ufh.3_Silent_p.S364S|DTX2_uc003ufj.3_Intron|DTX2_uc003ufk.3_Intron|DTX2_uc003ufl.1_Silent_p.S27S|DTX2_uc003ufm.3_5'Flank	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	364					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CTCCCGCCTCCCGTCTGGCTT	0.557													11	64					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76958673	76958673	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:76958673C>T	uc003ugf.2	-	21	1789	c.1710G>A	c.(1708-1710)AGG>AGA	p.R570R	PION_uc003ugd.2_5'Flank|PION_uc003ugg.1_3'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	570					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						CAAGAATATTCCTCACGTATG	0.373													4	30					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77755026	77755026	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:77755026C>T	uc003ugx.2	-	20	3806	c.3552G>A	c.(3550-3552)AGG>AGA	p.R1184R	MAGI2_uc003ugy.2_Silent_p.R1170R|MAGI2_uc010ldx.1_Silent_p.R777R	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1184	PDZ 6.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCCTCCCATTCCTTATTGCTG	0.413													18	39					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77973101	77973101	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:77973101C>T	uc003ugx.2	-	9	1656	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	MAGI2_uc003ugy.2_Missense_Mutation_p.E468K|MAGI2_uc010ldx.1_Missense_Mutation_p.E77K|MAGI2_uc010ldy.1_Missense_Mutation_p.E77K|MAGI2_uc011kgr.1_Missense_Mutation_p.E300K|MAGI2_uc011kgs.1_Missense_Mutation_p.E305K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	468	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TTACCTGTTTCCATTTTTCCA	0.408													23	51					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82390765	82390765	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:82390765C>T	uc003uhx.2	-	23	15341	c.15052G>A	c.(15052-15054)GAA>AAA	p.E5018K		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4941	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTCTTCATTTCCTTCTTCAAT	0.313													9	19					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544719	82544719	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:82544719G>A	uc003uhx.2	-	7	12872	c.12583C>T	c.(12583-12585)CTA>TTA	p.L4195L	PCLO_uc003uhv.2_Silent_p.L4195L|PCLO_uc010lec.2_Silent_p.L1160L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4126					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGTCAATTAGTGATTTCTTA	0.358													12	35					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82581216	82581216	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:82581216C>T	uc003uhx.2	-	5	9342	c.9053G>A	c.(9052-9054)GGA>GAA	p.G3018E	PCLO_uc003uhv.2_Missense_Mutation_p.G3018E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2949					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTGTCAGTTCCTTCAGAATA	0.403													24	70					0	0	1	0	0
SEMA3D	223117	broad.mit.edu	37	7	84636176	84636176	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:84636176G>A	uc003uic.2	-	16	1890	c.1850C>T	c.(1849-1851)TCC>TTC	p.S617F	SEMA3D_uc010led.2_Missense_Mutation_p.S617F|SEMA3D_uc003uib.2_Missense_Mutation_p.S256F	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	617	Ig-like C2-type.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TGCTTGTTGGGATTTAGGTAT	0.388													32	77					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87150164	87150164	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:87150164C>T	uc003uiz.1	-	23	3132	c.2714G>A	c.(2713-2715)CGA>CAA	p.R905Q	ABCB1_uc011khc.1_Missense_Mutation_p.R841Q	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	905	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AACAACGGTTCGGAAGTTTTC	0.413													13	29					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87175328	87175328	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:87175328G>A	uc003uiz.1	-	16	2156	c.1738C>T	c.(1738-1740)CGG>TGG	p.R580W	ABCB1_uc011khc.1_Missense_Mutation_p.R516W	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	580	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	ATGGTGGTCCGACCTTTTCTG	0.383													19	43					0	0	1	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87399899	87399899	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:87399899C>T	uc003ujb.2	+	8	1094	c.683C>T	c.(682-684)TCT>TTT	p.S228F	RUNDC3B_uc011khd.1_Missense_Mutation_p.S211F|RUNDC3B_uc011khe.1_Missense_Mutation_p.S211F|RUNDC3B_uc003ujc.2_Missense_Mutation_p.S211F|RUNDC3B_uc003ujd.2_Missense_Mutation_p.S133F	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	228										skin(1)	1	Esophageal squamous(14;0.00164)					CTTCCCAGTTCTGATAGTATC	0.383													8	10					0	0	1	0	0
SLC25A40	55972	broad.mit.edu	37	7	87483547	87483547	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:87483547T>C	uc003uje.2	-	5	587	c.236A>G	c.(235-237)AAG>AGG	p.K79R		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	79	Solcar 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					TCCTGGCTTCTTATACCATAG	0.313													15	49					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92732584	92732584	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:92732584C>T	uc003umf.2	-	3	3083	c.2827G>A	c.(2827-2829)GGA>AGA	p.G943R	SAMD9_uc003umg.2_Missense_Mutation_p.G943R	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	943						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TTTCCAATTCCTAAGAATTTT	0.383													13	28					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763946	92763946	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:92763946C>T	uc003umh.1	-	5	2555	c.1339G>A	c.(1339-1341)GAT>AAT	p.D447N	SAMD9L_uc003umj.1_Missense_Mutation_p.D447N|SAMD9L_uc003umi.1_Missense_Mutation_p.D447N|SAMD9L_uc010lfb.1_Missense_Mutation_p.D447N|SAMD9L_uc003umk.1_Missense_Mutation_p.D447N|SAMD9L_uc010lfc.1_Missense_Mutation_p.D447N|SAMD9L_uc010lfd.1_Missense_Mutation_p.D447N|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	447										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GATTCAGGATCAAACTCCAAC	0.343													22	58					0	0	1	0	0
BAIAP2L1	55971	broad.mit.edu	37	7	97941458	97941458	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:97941458G>A	uc003upj.2	-	8	1021	c.758C>T	c.(757-759)CCC>CTC	p.P253L		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	253					filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			TCCAGACACGGGGGTAGAGGC	0.483													49	114					0	0	1	0	0
TRIM4	89122	broad.mit.edu	37	7	99506319	99506319	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:99506319C>T	uc003usd.2	-	4	814	c.684G>A	c.(682-684)ACG>ACA	p.T228T	TRIM4_uc003use.2_Silent_p.T202T|TRIM4_uc011kjc.1_Silent_p.T58T|TRIM4_uc003usf.2_Silent_p.T202T	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	228	Potential.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				GCTTCTTCTTCGTCTCTTCTT	0.448													24	62					0	0	1	0	0
SPDYE3	441272	broad.mit.edu	37	7	99913409	99913410	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:99913409_99913410GG>AA	uc003uug.1	+	2	312_313	c.72_73GG>AA	c.(70-75)GAGGAT>GAAAAT	p.D25N		NM_001004351	NP_001004351	A6NKU9	SPDE3_HUMAN	speedy homolog E3	402											0						TAATCACAGAGGATCCTGTCAT	0.515													44	123					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350390	100350390	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:100350390C>T	uc003uwj.2	+	14	2827	c.2662C>T	c.(2662-2664)CCC>TCC	p.P888S	ZAN_uc003uwk.2_Missense_Mutation_p.P888S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	888	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACCCACCATCCCCATTGAAGA	0.502													20	32					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100675421	100675421	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:100675421G>A	uc003uxp.1	+	3	777	c.724G>A	c.(724-726)GAA>AAA	p.E242K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	242	Extracellular (Potential).|1.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTGTTGAAATCAGCAC	0.493													47	112					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100677635	100677635	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:100677635G>A	uc003uxp.1	+	3	2991	c.2938G>A	c.(2938-2940)GAA>AAA	p.E980K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	980	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|14.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GACTCCTAGTGAAGGAACGAC	0.512													88	193					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100682579	100682579	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:100682579C>T	uc003uxp.1	+	3	7935	c.7882C>T	c.(7882-7884)CCT>TCT	p.P2628S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2628	Extracellular (Potential).|59 X approximate tandem repeats.|42.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AATCTCAACTCCTAGTGAAGT	0.453													71	191					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685526	100685526	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:100685526C>T	uc003uxp.1	+	3	10882	c.10829C>T	c.(10828-10830)TCT>TTT	p.S3610F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3610	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|58.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGACCACTTCTACTCAGAGC	0.468													29	82					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101839972	101839972	+	Silent	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:101839972G>C	uc003uyx.3	+	15	1319	c.1281G>C	c.(1279-1281)CCG>CCC	p.P427P	CUX1_uc003uys.3_Silent_p.P438P|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	427					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GATCTTTGCCGGCCCCCCCTC	0.562													23	45					0	0	1	0	0
FBXL13	222235	broad.mit.edu	37	7	102604026	102604026	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:102604026C>T	uc003vaq.2	-	8	1105	c.678G>A	c.(676-678)TTG>TTA	p.L226L	FBXL13_uc010liq.1_Silent_p.L41L|FBXL13_uc010lir.1_Silent_p.L226L|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.L226L|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	226											0						CACGAAAATTCAAACGCAGCA	0.328													22	55					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103131239	103131239	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:103131239G>A	uc003vca.2	-	59	9641	c.9481C>T	c.(9481-9483)CCT>TCT	p.P3161S	RELN_uc010liz.2_Missense_Mutation_p.P3161S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3161					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GAAGAGGAAGGAAGGCACTGG	0.448													16	45					0	0	1	0	0
LHFPL3	375612	broad.mit.edu	37	7	103969529	103969529	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:103969529C>T	uc003vce.2	+	1	426	c.302C>T	c.(301-303)CCC>CTC	p.P101L	LHFPL3_uc003vcf.2_Missense_Mutation_p.P101L	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	87						integral to membrane					0						TCCACGCTGCCCTCGGGCGCC	0.582													19	56					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509428	106509428	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:106509428C>T	uc003vdv.3	+	2	1507	c.1422C>T	c.(1420-1422)CTC>CTT	p.L474L	PIK3CG_uc003vdu.2_Silent_p.L474L|PIK3CG_uc003vdw.2_Silent_p.L474L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	474					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						ACCGTTTCCTCCTGCGCCGTG	0.522													27	61					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509951	106509951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:106509951G>A	uc003vdv.3	+	2	2030	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E649K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E649K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	649					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TCAgaaactggagagcttgga	0.323													10	15					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116937775	116937775	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:116937775C>T	uc003viz.2	-	4	1044	c.744G>A	c.(742-744)CAG>CAA	p.Q248Q	WNT2_uc003vja.2_Silent_p.Q152Q	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	248					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CTGTGCCATCCTGGTTCATGA	0.502													20	59					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117171163	117171163	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:117171163A>T	uc003vjd.2	+	4	616	c.484A>T	c.(484-486)AAG>TAG	p.K162*	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	162	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTGATTTATAAGAAGGTAAT	0.398									Cystic_Fibrosis				7	16					0	0	1	0	0
TSPAN12	23554	broad.mit.edu	37	7	120428772	120428772	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:120428772C>T	uc003vjk.2	-	8	1166	c.792G>A	c.(790-792)AAG>AAA	p.K264K	TSPAN12_uc010lkj.2_Silent_p.K137K	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	264	Cytoplasmic (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					AGTTGTCATTCTTCAAGGACA	0.458													27	66					0	0	1	0	0
ING3	54556	broad.mit.edu	37	7	120609246	120609246	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:120609246G>T	uc003vjn.2	+	9	1030	c.896G>T	c.(895-897)GGT>GTT	p.G299V	ING3_uc003vjo.2_Missense_Mutation_p.G73V|ING3_uc003vjp.2_Missense_Mutation_p.G299V|ING3_uc011kns.1_Missense_Mutation_p.G284V	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	299					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					TCACGGAGTGGTCGAAAGAGC	0.438													8	18					1.06961e-07	1.08111e-07	1	1	0
ING3	54556	broad.mit.edu	37	7	120609248	120609248	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:120609248C>T	uc003vjn.2	+	9	1032	c.898C>T	c.(898-900)CGA>TGA	p.R300*	ING3_uc003vjo.2_Nonsense_Mutation_p.R74*|ING3_uc003vjp.2_Nonsense_Mutation_p.R300*|ING3_uc011kns.1_Nonsense_Mutation_p.R285*	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	300					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					ACGGAGTGGTCGAAAGAGCAA	0.448													8	18					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122033369	122033369	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:122033369C>T	uc010lkp.2	-	21	3052	c.2889G>A	c.(2887-2889)AAG>AAA	p.K963K	CADPS2_uc011knx.1_Silent_p.K338K|CADPS2_uc003vkg.3_Intron|CADPS2_uc010lkq.2_Intron	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	963	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TGGCGATATTCCTGTAAAGAA	0.458													19	42					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123595133	123595133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:123595133G>A	uc003vld.2	+	5	1439	c.1037G>A	c.(1036-1038)CGA>CAA	p.R346Q	SPAM1_uc003vle.2_Missense_Mutation_p.R346Q|SPAM1_uc011koa.1_Missense_Mutation_p.R2Q|SPAM1_uc003vlf.3_Missense_Mutation_p.R346Q|SPAM1_uc010lku.2_Missense_Mutation_p.R346Q	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	346					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	AGTATAATGCGAAGTATGGTA	0.294													23	53					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173490	126173490	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:126173490G>A	uc003vlr.2	-	8	2257	c.1946C>T	c.(1945-1947)TCC>TTC	p.S649F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.S649F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	649	Helical; Name=3; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCGTCGGAAGGAGCATATGAT	0.453										HNSCC(24;0.065)			21	31					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128494210	128494210	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:128494210G>A	uc003vnz.3	+	40	6876	c.6667G>A	c.(6667-6669)GGG>AGG	p.G2223R	FLNC_uc003voa.3_Missense_Mutation_p.G2190R	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2223	Intradomain insert.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGCTGTGTTTGGGGACTTCCT	0.716													6	23					0	0	1	0	0
IRF5	3663	broad.mit.edu	37	7	128587827	128587827	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:128587827C>T	uc003vog.2	+	8	923	c.802C>T	c.(802-804)CGG>TGG	p.R268W	IRF5_uc003voh.2_Missense_Mutation_p.R252W|IRF5_uc010llt.2_Missense_Mutation_p.R176W|IRF5_uc003voi.2_Missense_Mutation_p.R252W|IRF5_uc003voj.3_Missense_Mutation_p.R252W|IRF5_uc010llw.1_3'UTR	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	262					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGGCCACCCCGGGCCCTCAC	0.657													7	10					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129120720	129120720	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:129120720C>T	uc011koy.1	+	19	2079	c.2039C>T	c.(2038-2040)TCC>TTC	p.S680F	FAM40B_uc003vow.2_Missense_Mutation_p.S680F|FAM40B_uc011koz.1_Missense_Mutation_p.S172F	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	680											0						TGGAAACATTCCCGGACCATG	0.433													22	57					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131844304	131844304	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:131844304C>T	uc003vra.3	-	25	4817	c.4588G>A	c.(4588-4590)GAG>AAG	p.E1530K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1530	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGAATCTTCTCCTTGACCTGA	0.547													64	190					0	0	1	0	0
AKR1B15	441282	broad.mit.edu	37	7	134261147	134261147	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:134261147G>C	uc011kpr.1	+	9	1089	c.790G>C	c.(790-792)GAG>CAG	p.E264Q	AKR1B15_uc011kps.1_Missense_Mutation_p.E236Q	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	264							oxidoreductase activity			ovary(1)	1						CAAGATTAAGGAGATTGCTGC	0.448													8	31					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137531214	137531214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:137531214G>A	uc003vtt.2	-	1	396	c.395C>T	c.(394-396)TCG>TTG	p.S132L	DGKI_uc003vtu.2_5'UTR	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	132					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CTACCTGTACGAGACCTGCTT	0.637													5	17					0	0	1	0	0
AKR1D1	6718	broad.mit.edu	37	7	137798460	137798460	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:137798460G>A	uc003vtz.2	+	8	949	c.880G>A	c.(880-882)GAA>AAA	p.E294K	AKR1D1_uc011kqe.1_Intron|AKR1D1_uc011kqf.1_Missense_Mutation_p.E253K|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	294					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TCTCACTGAAGAAGAAATGAA	0.408													12	32					0	0	1	0	0
TRIM24	8805	broad.mit.edu	37	7	138189046	138189046	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:138189046C>T	uc003vuc.2	+	2	591	c.376C>T	c.(376-378)CGT>TGT	p.R126C	TRIM24_uc003vub.2_Missense_Mutation_p.R126C	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	126					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						TGGAGTCATTCGTTGCCCAGT	0.358													17	40					0	0	1	0	0
OR9A4	130075	broad.mit.edu	37	7	141618826	141618826	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:141618826G>A	uc003vwu.1	+	1	151	c.151G>A	c.(151-153)GAT>AAT	p.D51N		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TGTCTGTGTGGATAAACGTCT	0.448													49	96					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635733	141635733	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:141635733C>T	uc003vwv.1	-	5	423	c.226G>A	c.(226-228)GAA>AAA	p.E76K	CLEC5A_uc011krm.1_Missense_Mutation_p.E53K|CLEC5A_uc003vww.1_Missense_Mutation_p.E76K|CLEC5A_uc010lnq.1_Missense_Mutation_p.E53K|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	76	Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TGATAAAATTCCCAGTCTTTG	0.398													18	40					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141736640	141736640	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:141736640C>T	uc003vwy.2	+	18	2148	c.2094C>T	c.(2092-2094)TCC>TCT	p.S698S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	698	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATCCTGCCTCCTTTGGAGCTG	0.502													56	171					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141747584	141747584	+	Splice_Site	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:141747584G>A	uc003vwy.2	+	22	2553	c.2499_splice	c.e22-1	p.S833_splice		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase						polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTTCCCCACAGTCGAAAGAAC	0.413													7	23					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142561409	142561410	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142561409_142561410GG>AA	uc011kst.1	+	6	908_909	c.121_122GG>AA	c.(121-123)GGA>AAA	p.G41K	EPHB6_uc011ksu.1_Missense_Mutation_p.G41K|EPHB6_uc003wbs.2_Intron|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Intron	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	41	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGACACCACCGGAGAGACATCT	0.599													9	64					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142568001	142568001	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142568001C>T	uc011kst.1	+	18	3429	c.2642C>T	c.(2641-2643)CCC>CTC	p.P881L	EPHB6_uc011ksu.1_Missense_Mutation_p.P881L|EPHB6_uc003wbs.2_Missense_Mutation_p.P589L|EPHB6_uc003wbt.2_Missense_Mutation_p.P355L|EPHB6_uc003wbu.2_Missense_Mutation_p.P589L|EPHB6_uc003wbv.2_Missense_Mutation_p.P265L	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	881	Poly-Pro.|Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TTCCGGCTGCCCCCGCCTCCA	0.537													62	220					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142612060	142612060	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142612060C>T	uc003wby.1	-	11	1707	c.1443G>A	c.(1441-1443)ATG>ATA	p.M481I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	481	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCTTCTGGATCATGATGGTGA	0.552													12	46					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142612657	142612657	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142612657G>A	uc003wby.1	-	9	1468	c.1204C>T	c.(1204-1206)CTA>TTA	p.L402L		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	402	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CTCACCTCTAGGAGCAGGATG	0.557													14	31					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142640920	142640920	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142640920G>A	uc003wcb.2	-	14	1752	c.1542C>T	c.(1540-1542)TCC>TCT	p.S514S		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	514	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TAGCTCGGAGGGACCGGACAC	0.562													8	33					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142641814	142641814	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142641814G>A	uc003wcb.2	-	12	1539	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	443	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGATCGCAGTGAATAATTTCA	0.592													9	29					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142655026	142655026	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142655026G>A	uc003wcb.2	-	6	770	c.560C>T	c.(559-561)TCC>TTC	p.S187F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	187	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AAAGTTTAAGGAAGTCCATTT	0.517													16	31					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142723761	142723761	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142723761G>A	uc003wcc.1	-	1	459	c.459C>T	c.(457-459)ATC>ATT	p.I153I		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					AGATGGGCCAGATTTCAGAAA	0.418													16	41					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881294	142881294	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:142881294C>T	uc011ksw.1	+	1	783	c.783C>T	c.(781-783)ATC>ATT	p.I261I		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	261	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					TGGGGGCCATCAAAGCTATCA	0.478													25	80					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143018899	143018899	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:143018899C>T	uc003wcr.1	+	5	741	c.654C>T	c.(652-654)GCC>GCT	p.A218A	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Silent_p.A66A	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	218	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AGGTTGTCGCCCTGACTGCGG	0.587													10	30					0	0	1	0	0
FAM115C	285966	broad.mit.edu	37	7	143417196	143417196	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:143417196G>A	uc003wdf.2	+	3	1127	c.1044G>A	c.(1042-1044)CAG>CAA	p.Q348Q	FAM115C_uc003wdg.2_Silent_p.Q67Q|FAM115C_uc011ktk.1_Silent_p.Q348Q|FAM115C_uc003wdh.2_Silent_p.Q348Q|FAM115C_uc011ktm.1_Silent_p.Q348Q|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|FAM115C_uc011ktt.1_Silent_p.Q184Q|FAM115C_uc003wdi.1_Silent_p.Q67Q	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	348											0						AGCAGCTGCAGGAGTTTGTGG	0.632													16	50					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657228	143657228	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:143657228C>T	uc003wds.1	+	1	209	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					ACAGCCGACTCCACACTCCCA	0.512													62	150					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657478	143657478	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:143657478G>A	uc003wds.1	+	1	459	c.415G>A	c.(415-417)GGG>AGG	p.G139R		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CATGCATGGAGGGCTGTGTGC	0.557													18	51					0	0	1	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882729	143882729	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:143882729G>A	uc010lpc.2	+	1	2182	c.2133G>A	c.(2131-2133)AGG>AGA	p.R711R		NM_198495	NP_940897	Q8IX94	CTGE4_HUMAN	CTAGE family, member 4	711	Pro-rich.					integral to membrane					0						TGGATACAAGGGGCCCGTTCA	0.527													43	120					0	0	1	0	0
EZH2	2146	broad.mit.edu	37	7	148514333	148514333	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:148514333C>T	uc003wfd.1	-	11	1542	c.1376G>A	c.(1375-1377)GGG>GAG	p.G459E	EZH2_uc011kug.1_Missense_Mutation_p.G450E|EZH2_uc003wfb.1_Missense_Mutation_p.G464E|EZH2_uc003wfc.1_Missense_Mutation_p.G420E|EZH2_uc011kuh.1_Missense_Mutation_p.G450E|EZH2_uc011kui.1_3'UTR	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	459					negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			TGTTTTGGTCCCAATTAACCT	0.388			Mis		DLBCL								4	19					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149520932	149520932	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:149520932G>A	uc010lpk.2	+	94	13509	c.13509G>A	c.(13507-13509)AAG>AAA	p.K4503K	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4503					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGGGCTGTAAGGAGTGGTGAG	0.667													5	6					0	0	1	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217597	150217597	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150217597G>A	uc003whk.2	+	2	665	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	179							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCAGAGAAGGAAAGTCAAGT	0.488													16	39					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327167	150327167	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150327167G>A	uc003whn.2	-	2	488	c.64C>T	c.(64-66)CCT>TCT	p.P22S	GIMAP6_uc003whm.2_Silent_p.I16I	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	22							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCAGCACAGGATCCTGGGAC	0.453													59	151					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390257	150390257	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150390257T>A	uc003who.2	+	3	971	c.883T>A	c.(883-885)TGC>AGC	p.C295S	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	295						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCACAGCATGTGCAATTTGTT	0.318													5	22					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439756	150439756	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150439756G>A	uc003whr.1	+	3	881	c.529G>A	c.(529-531)GTG>ATG	p.V177M	GIMAP5_uc010lpu.2_Missense_Mutation_p.V35M	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	177	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAAGACCTGGTGCGGGAGTG	0.567													45	82					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490280	150490280	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150490280G>A	uc003wht.3	-	5	662	c.496C>T	c.(496-498)CGC>TGC	p.R166C	TMEM176B_uc003whu.3_Missense_Mutation_p.R166C|TMEM176B_uc003whv.3_Missense_Mutation_p.R129C|TMEM176B_uc003whw.3_Missense_Mutation_p.R166C	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	166					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGTCTGAGCGATCACACACA	0.507													25	58					0	0	1	0	0
AGAP3	116988	broad.mit.edu	37	7	150817200	150817200	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:150817200A>G	uc003wjg.1	+	8	1099	c.1096A>G	c.(1096-1098)AAG>GAG	p.K366E	AGAP3_uc003wje.1_Missense_Mutation_p.K138E|AGAP3_uc003wjf.1_Missense_Mutation_p.K366E|AGAP3_uc010lpy.1_Intron|AGAP3_uc003wjh.1_Missense_Mutation_p.K546E|AGAP3_uc003wji.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	330	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						ACCCATCCGAAAGCAGTCCAA	0.667													10	23					0	0	1	0	0
GALNT11	63917	broad.mit.edu	37	7	151791433	151791433	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:151791433C>T	uc010lqg.1	+	2	351	c.121C>T	c.(121-123)CCC>TCC	p.P41S	GALNT11_uc011kvm.1_Intron|GALNT11_uc003wku.2_Missense_Mutation_p.P41S|GALNT11_uc003wkv.1_Missense_Mutation_p.P41S|GALNT11_uc011kvn.1_RNA	NM_022087	NP_071370	Q8NCW6	GLT11_HUMAN	N-acetylgalactosaminyltransferase 11	41	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.214)	OV - Ovarian serous cystadenocarcinoma(82;0.00168)	UCEC - Uterine corpus endometrioid carcinoma (81;0.177)|BRCA - Breast invasive adenocarcinoma(188;0.0932)		TAAGAATGTGCCCGTCAAGGG	0.473													4	131					0	0	1	0	0
GALNT11	63917	broad.mit.edu	37	7	151791477	151791477	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:151791477C>T	uc010lqg.1	+	2	395	c.165C>T	c.(163-165)TTC>TTT	p.F55F	GALNT11_uc011kvm.1_Intron|GALNT11_uc003wku.2_Silent_p.F55F|GALNT11_uc003wkv.1_Silent_p.F55F|GALNT11_uc011kvn.1_RNA	NM_022087	NP_071370	Q8NCW6	GLT11_HUMAN	N-acetylgalactosaminyltransferase 11	55	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.214)	OV - Ovarian serous cystadenocarcinoma(82;0.00168)	UCEC - Uterine corpus endometrioid carcinoma (81;0.177)|BRCA - Breast invasive adenocarcinoma(188;0.0932)		CAAAAAAATTCTATCCCCGTT	0.463													39	65					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151860809	151860809	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:151860809G>A	uc003wla.2	-	43	10072	c.9853C>T	c.(9853-9855)CAG>TAG	p.Q3285*	MLL3_uc003wkz.2_Nonsense_Mutation_p.Q2346*|MLL3_uc003wky.2_Nonsense_Mutation_p.Q794*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3285	Gln-rich.|Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGCTGGGGCTGGACACTGGGC	0.532			N		medulloblastoma								9	32					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970854	151970854	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:151970854G>A	uc003wla.2	-	7	1167	c.948C>T	c.(946-948)ACC>ACT	p.T316T		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	316					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AATCCTGAAAGGTGCCGGCTC	0.433			N		medulloblastoma								8	158					0	0	1	0	0
SHH	6469	broad.mit.edu	37	7	155604733	155604733	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:155604733C>T	uc003wmk.1	-	1	235	c.84G>A	c.(82-84)AGG>AGA	p.R28R	SHH_uc003wmh.1_5'Flank|SHH_uc003wmi.1_5'Flank|SHH_uc003wmj.1_5'Flank	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	28					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCCGAACCCCCTGCCCGGTC	0.612													25	82					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157341706	157341706	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:157341706T>C	uc003wno.2	-	22	3031	c.2910A>G	c.(2908-2910)AAA>AAG	p.K970K	PTPRN2_uc003wnp.2_Silent_p.K953K|PTPRN2_uc003wnq.2_Silent_p.K941K|PTPRN2_uc003wnr.2_Silent_p.K932K|PTPRN2_uc011kwa.1_Silent_p.K993K|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	970	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TATCAATCTCTTTAGCACCTG	0.547													20	62					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959761	157959761	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:157959761G>A	uc003wno.2	-	6	893	c.772C>T	c.(772-774)CCC>TCC	p.P258S	PTPRN2_uc003wnp.2_Missense_Mutation_p.P241S|PTPRN2_uc003wnq.2_Missense_Mutation_p.P258S|PTPRN2_uc003wnr.2_Missense_Mutation_p.P220S|PTPRN2_uc011kwa.1_Missense_Mutation_p.P281S	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	258	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCCTCCCCGGGGGGAGCTGGG	0.657													5	15					0	0	1	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													4	44					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855624	2855624	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:2855624G>A	uc011kwk.1	-	54	8679	c.8289C>T	c.(8287-8289)TTC>TTT	p.F2763F	CSMD1_uc011kwj.1_Silent_p.F2092F|CSMD1_uc010lrg.2_Silent_p.F773F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2763	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTTGCAGGTGAAATTCACGA	0.557													19	55					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10468395	10468395	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:10468395G>A	uc003wtc.2	-	4	3442	c.3213C>T	c.(3211-3213)AGC>AGT	p.S1071S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1071					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTGCCCGCAGGCTCACCCTGC	0.687													6	23					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10480106	10480106	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:10480106T>G	uc003wtc.2	-	2	835	c.606A>C	c.(604-606)AAA>AAC	p.K202N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	202					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGCCTACCTTTTTCCCGCTGG	0.483													50	131					0	0	1	0	0
INTS10	55174	broad.mit.edu	37	8	19679948	19679948	+	Splice_Site	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:19679948A>T	uc003wzj.2	+	5	573	c.442_splice	c.e5-2	p.V148_splice		NM_018142	NP_060612	Q9NVR2	INT10_HUMAN	integrator complex subunit 10						snRNA processing	integrator complex	protein binding			ovary(1)	1				Colorectal(111;0.057)|COAD - Colon adenocarcinoma(73;0.215)		GTTTTGAAATAGGTTGGCCTT	0.318													6	23					0	0	1	0	0
SLC18A1	6570	broad.mit.edu	37	8	20022610	20022610	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:20022610C>T	uc011kyq.1	-	10	1338	c.867G>A	c.(865-867)AAG>AAA	p.K289K	SLC18A1_uc003wzl.2_Silent_p.K76K|SLC18A1_uc003wzm.2_Silent_p.K289K|SLC18A1_uc011kyr.1_Silent_p.K289K|SLC18A1_uc003wzn.2_Silent_p.K289K|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Silent_p.K289K	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	289	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		GGGGAGTCCCCTTGGCACTCT	0.408													28	55					0	0	1	0	0
PPP3CC	5533	broad.mit.edu	37	8	22390488	22390488	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:22390488C>T	uc003xbs.2	+	12	1605	c.1278C>T	c.(1276-1278)CTC>CTT	p.L426L	PPP3CC_uc011kzi.1_Silent_p.L435L|PPP3CC_uc003xbt.2_Silent_p.L426L|PPP3CC_uc011kzj.1_Silent_p.L141L	NM_005605	NP_005596	P48454	PP2BC_HUMAN	protein phosphatase 3, catalytic subunit, gamma	426					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	cytosol	calmodulin binding|metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		Prostate(55;0.104)		BRCA - Breast invasive adenocarcinoma(99;0.00756)|Colorectal(74;0.0238)|COAD - Colon adenocarcinoma(73;0.0835)		CAGGCACACTCCCTCTGGGCG	0.557													11	41					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24324492	24324492	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:24324492C>T	uc003xeb.2	+	6	683	c.570C>T	c.(568-570)TCC>TCT	p.S190S	ADAM7_uc003xea.1_Silent_p.S190S	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	190	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AAGAAGACTCCAAAATAAAAG	0.348													18	54					0	0	1	0	0
NEFL	4747	broad.mit.edu	37	8	24813348	24813348	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:24813348C>T	uc003xee.2	-	1	784	c.682G>A	c.(682-684)GAA>AAA	p.E228K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	228	Rod.|Coil 1B.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		ATCTCCTCTTCGTGCACTTTC	0.612													9	18					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25899713	25899713	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:25899713C>T	uc003xes.1	-	2	203	c.186G>A	c.(184-186)AGG>AGA	p.R62R	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Silent_p.R62R	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	62	Interaction with DNA (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AGTTGGATTTCCTCAAGTTGG	0.582													10	42					0	0	1	0	0
CLU	1191	broad.mit.edu	37	8	27462613	27462613	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:27462613G>A	uc003xfw.1	-	4	715	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CLU_uc010lux.1_Silent_p.F84F|CLU_uc003xfx.1_Silent_p.F219F|CLU_uc003xfy.1_Silent_p.F230F|CLU_uc003xfz.1_Silent_p.F271F	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	219					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		ACTTGGGAAAGAAGAAGTGAG	0.587													17	68					0	0	1	0	0
ZNF395	55893	broad.mit.edu	37	8	28210782	28210782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:28210782C>T	uc003xgq.2	-	5	815	c.727G>A	c.(727-729)GGG>AGG	p.G243R	ZNF395_uc003xgt.2_Missense_Mutation_p.G243R|ZNF395_uc003xgr.2_Missense_Mutation_p.G243R|ZNF395_uc003xgs.2_Missense_Mutation_p.G243R	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	243					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		AAAGCATCCCCCAAATACTTG	0.597													24	45					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30706118	30706118	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:30706118G>A	uc003xil.2	-	1	416	c.416C>T	c.(415-417)CCT>CTT	p.P139L		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	139										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTTATTGGGAGGTATACAGTC	0.408													21	56					0	0	1	0	0
TACC1	6867	broad.mit.edu	37	8	38700881	38700881	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:38700881C>T	uc010lwp.2	+	11	2575	c.2196C>T	c.(2194-2196)GCC>GCT	p.A732A	TACC1_uc003xma.2_Silent_p.A170A|TACC1_uc003xlz.2_Silent_p.A537A|TACC1_uc003xmc.3_Silent_p.A536A|TACC1_uc011lbz.1_Silent_p.A719A|TACC1_uc003xmb.3_Silent_p.A658A|TACC1_uc003xmf.3_Silent_p.A322A|TACC1_uc011lca.1_Silent_p.A715A|TACC1_uc011lcb.1_Silent_p.A508A|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Silent_p.A549A|TACC1_uc010lwq.2_Silent_p.A548A	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	732	|Interaction with CH-TOG.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			GATACCAGGCCCTGAAAATCC	0.393													33	74					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39505881	39505881	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:39505881G>A	uc003xni.2	+	12	1065	c.1065G>A	c.(1063-1065)AAG>AAA	p.K355K	ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Silent_p.K331K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	355	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GTGGTAGAAAGATTTTTAGCA	0.333													12	28					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39645692	39645692	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:39645692C>T	uc003xnj.2	-	9	796	c.721G>A	c.(721-723)GGA>AGA	p.G241R	ADAM2_uc003xnk.2_Missense_Mutation_p.G222R|ADAM2_uc011lck.1_Missense_Mutation_p.G241R|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	241	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TTAGCTTCTCCAGTGGTTGCA	0.284													19	40					0	0	1	0	0
ZMAT4	79698	broad.mit.edu	37	8	40554769	40554769	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:40554769G>A	uc003xnr.2	-	4	490	c.344C>T	c.(343-345)ACC>ATC	p.T115I	ZMAT4_uc003xns.2_Missense_Mutation_p.T115I	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	115						nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			CGTACCTGTGGTCTTTAATGG	0.507													30	95					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41557023	41557023	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:41557023C>T	uc003xok.2	-	23	2589	c.2505G>A	c.(2503-2505)AGG>AGA	p.R835R	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.R151R|ANK1_uc003xoi.2_Silent_p.R835R|ANK1_uc003xoj.2_Silent_p.R835R|ANK1_uc003xol.2_Silent_p.R835R|ANK1_uc003xom.2_Silent_p.R876R	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	835					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CATCAACATCCCTGGAATCCC	0.562													29	86					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42585803	42585803	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:42585803C>T	uc003xpi.1	+	4	444	c.316C>T	c.(316-318)CCA>TCA	p.P106S		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	106	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CATTAAAGTTCCATCAGAATC	0.353													8	33					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587027	42587027	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:42587027A>T	uc003xpi.1	+	5	705	c.577A>T	c.(577-579)AAA>TAA	p.K193*		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	193	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TGTCGACAGAAAAGACTTCTT	0.458													35	49					0	0	1	0	0
SNTG1	54212	broad.mit.edu	37	8	51571217	51571217	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:51571217C>T	uc010lxy.1	+	16	1403	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	SNTG1_uc003xqs.1_Silent_p.I344I|SNTG1_uc010lxz.1_Silent_p.I344I|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	344	PH.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TGTGCAAGATCCTCAAGGTAT	0.368													7	32					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55534024	55534024	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:55534024G>A	uc003xsd.1	+	2	646	c.498G>A	c.(496-498)ACG>ACA	p.T166T	RP1_uc011ldy.1_Silent_p.T166T	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	166	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACCCGAAGACGAGGCGTGCGG	0.647													28	84					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538333	55538333	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:55538333G>A	uc003xsd.1	+	4	2039	c.1891G>A	c.(1891-1893)GCT>ACT	p.A631T	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	631					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGAGGCTCCAGCTTCAGAAGC	0.358													17	34					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55541939	55541939	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:55541939G>C	uc003xsd.1	+	4	5645	c.5497G>C	c.(5497-5499)GAC>CAC	p.D1833H	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1833					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTTTCATGAGGACTTGCTGGA	0.428													10	20					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56436222	56436222	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:56436222G>A	uc003xsf.2	+	3	1421	c.1389G>A	c.(1387-1389)GTG>GTA	p.V463V		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	463	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			ACTATTTTGTGATCCTTTTGG	0.468													26	68					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57358459	57358459	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:57358459G>A	uc003xsz.2	-	1	135	c.54C>T	c.(52-54)CTC>CTT	p.L18L	uc003xtb.1_RNA|PENK_uc003xta.3_Silent_p.L18L|PENK_uc010lym.2_Silent_p.L18L	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	18					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CGGTCGCCAGGAGCCCGGGGC	0.677													11	18					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61765107	61765107	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:61765107G>A	uc003xue.2	+	30	6422	c.5945G>A	c.(5944-5946)GGG>GAG	p.G1982E		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1982					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TCCACCTTTGGGGTTATTTTT	0.388													8	18					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212586	62212586	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:62212586G>A	uc003xuh.2	+	2	524	c.200G>A	c.(199-201)GGA>GAA	p.G67E	CLVS1_uc003xug.2_Missense_Mutation_p.G67E|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.G67E	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	67					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CCTGACATTGGATTTTTACGT	0.458													11	41					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67066489	67066489	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:67066489G>A	uc003xvv.2	+	9	1670	c.1444G>A	c.(1444-1446)GCA>ACA	p.A482T	TRIM55_uc003xvu.2_Missense_Mutation_p.A482T|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	482						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TGTACGGAAGGCAGAAGTGGC	0.567													6	34					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68981315	68981315	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:68981315C>T	uc003xxv.1	+	12	1414	c.1387C>T	c.(1387-1389)CGC>TGC	p.R463C	PREX2_uc003xxu.1_Missense_Mutation_p.R463C|PREX2_uc011lez.1_Missense_Mutation_p.R398C	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	463	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATATAGATTTCGCTATGATGA	0.348													8	17					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69129923	69129923	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:69129923C>T	uc003xxv.1	+	38	4704	c.4677C>T	c.(4675-4677)ATC>ATT	p.I1559I		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1559					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTCGTTACATCATGCAGGCTA	0.527													13	16					0	0	1	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70617400	70617400	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:70617400C>T	uc003xyl.2	-	6	2195	c.1488G>A	c.(1486-1488)TTG>TTA	p.L496L	SLCO5A1_uc010lzb.2_Silent_p.L441L|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Silent_p.L496L|SLCO5A1_uc010lzc.2_Silent_p.L441L	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	496	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CACCAAGTTTCAATTTTTTTA	0.403													17	41					0	0	1	0	0
XKR9	389668	broad.mit.edu	37	8	71619283	71619283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:71619283G>A	uc003xyq.2	+	4	922	c.388G>A	c.(388-390)GAT>AAT	p.D130N	XKR9_uc010lze.2_Missense_Mutation_p.D130N|XKR9_uc010lzd.2_5'UTR	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	130						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			TAGAGTGACTGATTTGAGCAT	0.388													11	44					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618367	77618367	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:77618367C>T	uc003yav.2	+	2	2431	c.2044C>T	c.(2044-2046)CCT>TCT	p.P682S	ZFHX4_uc003yat.1_Missense_Mutation_p.P682S|ZFHX4_uc003yau.1_Missense_Mutation_p.P682S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P682S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	682						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GACTGGACAGCCTCACCCCAG	0.512										HNSCC(33;0.089)			9	24					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767364	77767364	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:77767364C>T	uc003yav.2	+	10	8459	c.8072C>T	c.(8071-8073)CCA>CTA	p.P2691L	ZFHX4_uc003yau.1_Missense_Mutation_p.P2736L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2691L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2691						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCATCTTTGCCATTAACTAAA	0.413										HNSCC(33;0.089)			15	30					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886004	88886004	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:88886004G>A	uc003ydz.2	-	1	293	c.196C>T	c.(196-198)CCC>TCC	p.P66S		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	66										ovary(1)	1						AAAGAGGAGGGATCCCAGCTA	0.517													30	52					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93003922	93003922	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:93003922C>T	uc003yfd.2	-	6	1020	c.936G>A	c.(934-936)AGG>AGA	p.R312R	RUNX1T1_uc003yfc.1_Silent_p.R285R|RUNX1T1_uc003yfe.1_Silent_p.R275R|RUNX1T1_uc010mao.2_Silent_p.R285R|RUNX1T1_uc011lgi.1_Silent_p.R323R|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Silent_p.R275R	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	312					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GATAGGAGTCCCTGTAGTGGT	0.547													38	99					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95172263	95172263	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:95172263C>T	uc003ygh.2	-	12	1612	c.1487G>A	c.(1486-1488)AGT>AAT	p.S496N	CDH17_uc011lgo.1_Missense_Mutation_p.S282N|CDH17_uc011lgp.1_Missense_Mutation_p.S496N	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	496	Extracellular (Potential).|Cadherin 5.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			GCGTCCCTCACTGTCTCCCTT	0.413													33	61					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95172282	95172282	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:95172282G>A	uc003ygh.2	-	12	1593	c.1468C>T	c.(1468-1470)CAT>TAT	p.H490Y	CDH17_uc011lgo.1_Missense_Mutation_p.H276Y|CDH17_uc011lgp.1_Missense_Mutation_p.H490Y	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	490	Extracellular (Potential).|Cadherin 5.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TTTATGATATGATACAGAATT	0.443													17	60					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100128015	100128015	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:100128015C>T	uc003yiv.2	+	7	961	c.850C>T	c.(850-852)CTT>TTT	p.L284F	VPS13B_uc003yiw.2_Missense_Mutation_p.L284F|VPS13B_uc003yit.2_Missense_Mutation_p.L284F|VPS13B_uc003yiu.1_Missense_Mutation_p.L284F|VPS13B_uc003yis.2_Missense_Mutation_p.L284F|VPS13B_uc011lgy.1_Missense_Mutation_p.L160F	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	284					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGGAATTGCTCTTTACTATGG	0.318													15	50					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100454707	100454707	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:100454707C>T	uc003yiv.2	+	23	3400	c.3289C>T	c.(3289-3291)CCT>TCT	p.P1097S	VPS13B_uc003yiw.2_Missense_Mutation_p.P1097S|VPS13B_uc003yiu.1_Missense_Mutation_p.P1097S|VPS13B_uc003yix.1_Missense_Mutation_p.P567S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1097					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGGTGACATTCCTGGAACAGT	0.408													14	44					0	0	1	0	0
RRM2B	50484	broad.mit.edu	37	8	103238255	103238255	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:103238255A>T	uc003ykn.2	-	3	456	c.212T>A	c.(211-213)TTA>TAA	p.L71*	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Nonsense_Mutation_p.L19*|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	71					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			ATCCTTTGATAAGTCGACCTG	0.343								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					19	33					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103291376	103291376	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:103291376G>A	uc003ykr.1	-	43	6095	c.6062C>T	c.(6061-6063)CCA>CTA	p.P2021L	UBR5_uc003yks.1_Missense_Mutation_p.P2021L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2021					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCGGAAAAATGGATGGTTTTG	0.418													14	61					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813815	106813815	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:106813815C>T	uc003ymd.2	+	8	1528	c.1505C>T	c.(1504-1506)TCT>TTT	p.S502F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S233F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	502					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCTCAGTTTTCTTTCCCCCAA	0.488													33	133					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814475	106814475	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:106814475C>T	uc003ymd.2	+	8	2188	c.2165C>T	c.(2164-2166)GCT>GTT	p.A722V	ZFPM2_uc011lhs.1_Missense_Mutation_p.A453V	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	722					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAGAGGTCTGCTTCCAACAAA	0.517													6	19					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510723	110510723	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:110510723T>C	uc003yne.2	+	66	10736	c.10632T>C	c.(10630-10632)TTT>TTC	p.F3544F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3544	Extracellular (Potential).|PbH1 9.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCCCTGGGTTTAATTGCTCTG	0.338										HNSCC(38;0.096)			12	48					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110984751	110984751	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:110984751C>T	uc003ynr.3	-	2	1069	c.727G>A	c.(727-729)GAA>AAA	p.E243K	KCNV1_uc010mcw.2_Missense_Mutation_p.E243K	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	243	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TCCAGGATTTCCAGCAGCTGC	0.527													22	55					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131792960	131792960	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:131792960G>A	uc003ytd.3	-	18	3688	c.3432C>T	c.(3430-3432)GGC>GGT	p.G1144G	ADCY8_uc010mds.2_Silent_p.G1013G	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1144	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CAAAGGCAAAGCCCTGGTCCT	0.517										HNSCC(32;0.087)			42	80					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141785	133141785	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:133141785G>T	uc003ytj.2	-	15	2568	c.2343C>A	c.(2341-2343)AGC>AGA	p.S781R	KCNQ3_uc010mdt.2_Missense_Mutation_p.S769R|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	781					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CTCGCGTGATGCTACGTCTCT	0.602													10	33					1.36491e-13	1.38554e-13	1	1	0
TG	7038	broad.mit.edu	37	8	133899415	133899415	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:133899415G>A	uc003ytw.2	+	9	1839	c.1798G>A	c.(1798-1800)GAA>AAA	p.E600K		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	600					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGATGTGATGGAAACGGTACT	0.473													21	70					0	0	1	0	0
NDRG1	10397	broad.mit.edu	37	8	134258865	134258865	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:134258865G>A	uc003yuh.2	-	13	1435	c.849C>T	c.(847-849)CTC>CTT	p.L283L	NDRG1_uc003yue.1_5'Flank|NDRG1_uc003yuf.1_Silent_p.L94L|NDRG1_uc003yug.2_Silent_p.L283L|NDRG1_uc010mee.2_Silent_p.L202L|NDRG1_uc010mef.2_Silent_p.L217L|NDRG1_uc011ljh.1_Silent_p.L111L|NDRG1_uc011lji.1_Silent_p.L30L	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	283					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			GTACCTTGAGGAGAGTGGTCT	0.438													34	94					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139153511	139153511	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:139153511G>A	uc003yuy.2	-	17	3891	c.3720C>T	c.(3718-3720)CTC>CTT	p.L1240L	FAM135B_uc003yux.2_Silent_p.L1141L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1240										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGAACGTGTGGAGTTTGTTGA	0.522										HNSCC(54;0.14)			31	58					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142190941	142190941	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:142190941C>T	uc003yvy.2	+	17	2970	c.2692C>T	c.(2692-2694)CTC>TTC	p.L898F	DENND3_uc010mep.2_Missense_Mutation_p.L859F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	898										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GGACGTGCTGCTCTACACTCC	0.582													17	54					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142204176	142204176	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:142204176G>A	uc003yvy.2	+	23	3719	c.3441G>A	c.(3439-3441)GGG>GGA	p.G1147G	DENND3_uc010mep.2_Silent_p.G1108G|DENND3_uc003ywa.1_3'UTR|DENND3_uc003ywb.2_Silent_p.G197G	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1147										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CACCCAAGGGGAAAATCTACG	0.632													19	55					0	0	1	0	0
GPR20	2843	broad.mit.edu	37	8	142367831	142367831	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:142367831G>A	uc003ywf.2	-	2	282	c.193C>T	c.(193-195)CTG>TTG	p.L65L		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	65	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			AGCCCTGCCAGGAAGATGGCT	0.652													16	22					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143623549	143623549	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:143623549C>T	uc003ywm.2	+	27	4137	c.3954C>T	c.(3952-3954)TCC>TCT	p.S1318S		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1318	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCAAGTCCTCCTTCGTCGGTG	0.657													22	58					0	0	1	0	0
LY6K	54742	broad.mit.edu	37	8	143784508	143784508	+	Splice_Site	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:143784508G>A	uc011ljv.1	+	3	635	c.218_splice	c.e3-1	p.K73_splice	LY6K_uc011ljw.1_3'UTR|LY6K_uc011ljx.1_Intron	NM_017527	NP_059997	Q17RY6	LY6K_HUMAN	lymphocyte antigen 6 complex, locus K isoform 1							anchored to membrane|cytoplasm|extracellular region|nucleolus|plasma membrane				central_nervous_system(1)	1	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TTTCCTATTAGAAATATTTCC	0.532													11	18					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144946926	144946926	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:144946926C>T	uc003zaa.1	-	1	509	c.496G>A	c.(496-498)GGA>AGA	p.G166R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	166	Plectin 4.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACGAGCACTCCCTGGGCGGGG	0.682													5	11					0	0	1	0	0
RECQL4	9401	broad.mit.edu	37	8	145741395	145741395	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr8:145741395G>A	uc003zdj.2	-	5	1140	c.1108C>T	c.(1108-1110)CGT>TGT	p.R370C	LRRC14_uc003zdk.1_5'Flank|LRRC14_uc003zdl.1_5'Flank	NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	370					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			AGCCTGCTACGGAGTGCCCGG	0.637			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				7	16					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2058350	2058350	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:2058350G>T	uc003zhc.2	+	8	1506	c.1407G>T	c.(1405-1407)GTG>GTT	p.V469V	SMARCA2_uc003zhd.2_Silent_p.V469V|SMARCA2_uc010mha.2_Silent_p.V460V	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	469	HSA.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		ATCGGTCTGTGGCCGGAAAGA	0.423													33	110					3.90053e-15	3.96374e-15	1	1	0
GLIS3	169792	broad.mit.edu	37	9	3856110	3856110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:3856110C>T	uc003zhw.1	-	8	2101	c.1907G>A	c.(1906-1908)AGA>AAA	p.R636K	GLIS3_uc003zhx.1_Missense_Mutation_p.R791K|GLIS3_uc010mhf.1_Missense_Mutation_p.R185K|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.R569K	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	636					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGGCTGTGTTCTTTGCAGTAT	0.463													15	48					0	0	1	0	0
INSL6	11172	broad.mit.edu	37	9	5164230	5164230	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:5164230C>T	uc003zix.2	-	2	341	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	109						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		GACTGCATTTCCCAACTGTTT	0.318													17	63					0	0	1	0	0
KIAA2026	158358	broad.mit.edu	37	9	5921171	5921171	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:5921171T>A	uc003zjq.3	-	8	5041	c.4825A>T	c.(4825-4827)AAA>TAA	p.K1609*	KIAA2026_uc010mht.2_Nonsense_Mutation_p.K784*	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1609										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TTGCTACTTTTGTCTTCTCCT	0.363													13	38					0	0	1	0	0
KDM4C	23081	broad.mit.edu	37	9	6984370	6984370	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:6984370G>A	uc003zkh.2	+	10	1900	c.1320G>A	c.(1318-1320)GTG>GTA	p.V440V	KDM4C_uc010mhu.2_Silent_p.V462V|KDM4C_uc011lmi.1_Silent_p.V440V|KDM4C_uc011lmj.1_RNA|KDM4C_uc003zkg.2_Silent_p.V440V|KDM4C_uc011lmk.1_Silent_p.V259V|KDM4C_uc011lml.1_Silent_p.V127V	NM_015061	NP_055876	Q9H3R0	KDM4C_HUMAN	jumonji domain containing 2C isoform 1	440					positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	nuclear chromatin	androgen receptor binding|enzyme binding|histone demethylase activity (H3-K9 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1						GGATGCAGGTGGAGCAGAATT	0.418													19	49					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8375972	8375972	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:8375972T>C	uc003zkk.2	-	38	5336	c.4625A>G	c.(4624-4626)AAC>AGC	p.N1542S	PTPRD_uc003zkp.2_Missense_Mutation_p.N1136S|PTPRD_uc003zkq.2_Missense_Mutation_p.N1135S|PTPRD_uc003zkr.2_Missense_Mutation_p.N1126S|PTPRD_uc003zks.2_Missense_Mutation_p.N1135S|PTPRD_uc003zkl.2_Missense_Mutation_p.N1533S|PTPRD_uc003zkm.2_Missense_Mutation_p.N1529S|PTPRD_uc003zkn.2_Missense_Mutation_p.N1131S|PTPRD_uc003zko.2_Missense_Mutation_p.N1132S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1542	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATCGGGAGGGTTACAGGTTTT	0.468										TSP Lung(15;0.13)			23	43					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15190619	15190619	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:15190619C>T	uc003zlr.1	-	11	961	c.840G>A	c.(838-840)AGG>AGA	p.R280R	TTC39B_uc003zlq.1_Silent_p.R249R|TTC39B_uc011lmp.1_Silent_p.R181R|TTC39B_uc010mie.1_Silent_p.R278R|TTC39B_uc011lmq.1_Silent_p.R280R|TTC39B_uc011lmr.1_Silent_p.R211R|TTC39B_uc010mif.1_Silent_p.R280R|TTC39B_uc003zls.1_Silent_p.R181R|TTC39B_uc010mig.1_Silent_p.R249R|TTC39B_uc011lms.1_RNA|TTC39B_uc003zlp.1_5'Flank	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	280							binding			ovary(1)	1						ACCTCATGCTCCTTCCTGAAG	0.393													11	37					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	21278379	21278379	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:21278379G>A	uc003zou.1	-	1		c.184C>T								Messenger RNA for human leukocyte (alpha) interferon.																		TCATCTCATGGAAAAGGAAGA	0.423													8	12					0	0	1	0	0
IFNA5	3442	broad.mit.edu	37	9	21304743	21304743	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:21304743G>A	uc011lnh.1	-	1	513	c.513C>T	c.(511-513)ATC>ATT	p.I171I		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	171					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGGATCTCATGATTTCTGCTC	0.398													49	78					0	0	1	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624287	33624287	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:33624287G>A	uc010mjx.2	+	1	65	c.16G>A	c.(16-18)GAA>AAA	p.E6K		NM_004039	NP_004030			annexin A2 isoform 2												0						TACTGTTCACGAAATCCTGTG	0.527											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	25					0	0	1	0	0
UBAP2	55833	broad.mit.edu	37	9	33989090	33989090	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:33989090T>A	uc003ztq.1	-	5	436	c.323A>T	c.(322-324)AAT>ATT	p.N108I	UBAP2_uc011loc.1_Missense_Mutation_p.N70I|UBAP2_uc011lod.1_5'UTR|UBAP2_uc011loe.1_Intron|UBAP2_uc011lof.1_Missense_Mutation_p.N33I|UBAP2_uc011log.1_Missense_Mutation_p.N107I|UBAP2_uc003ztr.2_Missense_Mutation_p.N33I	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	108	Potential.									ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		TTTTGCAAAATTCTTTTTCTT	0.388													14	40					0	0	1	0	0
KIAA1161	57462	broad.mit.edu	37	9	34372267	34372267	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:34372267G>A	uc003zue.3	-	3	842	c.675C>T	c.(673-675)CTC>CTT	p.L225L		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	225	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		AGTAGCGCTCGAGGATGCCCC	0.657													4	10					0	0	1	0	0
RUSC2	9853	broad.mit.edu	37	9	35547173	35547173	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:35547173G>A	uc003zww.2	+	2	910	c.655G>A	c.(655-657)GAT>AAT	p.D219N	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.D219N	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	219						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			TGGAGCCAGCGATACCTCTGG	0.617													13	62					0	0	1	0	0
TLN1	7094	broad.mit.edu	37	9	35714779	35714779	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:35714779G>A	uc003zxt.2	-	22	3203	c.2849C>T	c.(2848-2850)CCC>CTC	p.P950L		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	950					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CACCAGCAGGGGCTGGGGGCC	0.597													29	85					0	0	1	0	0
OR13J1	392309	broad.mit.edu	37	9	35870329	35870329	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:35870329C>T	uc011lph.1	-	1	70	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			AGCAGATGCTCCAGGGCTGGG	0.557													9	32					0	0	1	0	0
FBXO10	26267	broad.mit.edu	37	9	37541745	37541745	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:37541745G>A	uc004aab.2	-	2	70	c.21C>T	c.(19-21)CCC>CCT	p.P7P	FBXO10_uc004aac.2_Silent_p.P23P|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	7	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		ACAGCTCCAAGGGGAGGCCAC	0.512													11	28					0	0	1	0	0
RG9MTD3	158234	broad.mit.edu	37	9	37769949	37769949	+	Silent	SNP	A	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:37769949A>G	uc004aai.2	+	6	662	c.585A>G	c.(583-585)ACA>ACG	p.T195T	RG9MTD3_uc011lqo.1_Silent_p.T144T|RG9MTD3_uc011lqp.1_Silent_p.T117T|RG9MTD3_uc011lqq.1_Silent_p.T84T|RG9MTD3_uc004aaj.2_RNA|RG9MTD3_uc004aak.2_Silent_p.T100T	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain	195							methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		TAGACATAACAGAAGAAGACT	0.308													34	85					0	0	1	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396955	38396955	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:38396955G>A	uc004aay.2	+	2	1322	c.1210G>A	c.(1210-1212)GGT>AGT	p.G404S		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	404					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	TACTGTCTTTGGTGGCGTGCA	0.547													11	46					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39177414	39177414	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:39177414G>A	uc004abi.2	-	6	1067	c.828C>T	c.(826-828)CTC>CTT	p.L276L	CNTNAP3_uc004abj.2_Silent_p.L276L|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.L276L|CNTNAP3_uc011lqs.1_Silent_p.L276L|CNTNAP3_uc004abl.1_Silent_p.L188L	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	276	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GGAGCTCGATGAGGACGGAAT	0.517													18	38					0	0	1	0	0
TJP2	9414	broad.mit.edu	37	9	71862934	71862934	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:71862934G>A	uc004ahe.2	+	19	2874	c.2674G>A	c.(2674-2676)GGG>AGG	p.G892R	TJP2_uc011lrs.1_Missense_Mutation_p.G869R|TJP2_uc004ahd.2_Missense_Mutation_p.G892R|TJP2_uc004ahf.2_Missense_Mutation_p.G892R|TJP2_uc011lru.1_Missense_Mutation_p.G896R|TJP2_uc011lrv.1_Missense_Mutation_p.G914R|TJP2_uc010mom.1_Missense_Mutation_p.G52R	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	892					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						CTAGATGGAAGGGATGGATGA	0.547													20	62					0	0	1	0	0
SMC5	23137	broad.mit.edu	37	9	72967180	72967180	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:72967180C>T	uc004ahr.2	+	25	3356	c.3239C>T	c.(3238-3240)CCA>CTA	p.P1080L	SMC5_uc011lry.1_Missense_Mutation_p.P225L	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	1080					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						ATGCTGGAACCAAACACATGG	0.373													26	74					0	0	1	0	0
RORB	6096	broad.mit.edu	37	9	77257398	77257398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:77257398C>T	uc004aji.2	+	4	386	c.337C>T	c.(337-339)CAG>TAG	p.Q113*	RORB_uc004ajh.2_Nonsense_Mutation_p.Q102*	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	113	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						gaagcaccagcagcggctgca	0.418													19	45					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77343254	77343254	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:77343254C>T	uc004ajl.1	-	38	6074	c.5836G>A	c.(5836-5838)GGA>AGA	p.G1946R	TRPM6_uc004ajk.1_Missense_Mutation_p.G1941R|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G897R|TRPM6_uc010mpd.1_Missense_Mutation_p.G779R|TRPM6_uc010mpe.1_Missense_Mutation_p.G493R|TRPM6_uc004ajj.1_Missense_Mutation_p.G902R	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1946	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AACACCATTCCTCTTGATCTA	0.428													10	28					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78601051	78601051	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:78601051G>A	uc004ajz.2	+	3	839	c.301G>A	c.(301-303)GAA>AAA	p.E101K	PCSK5_uc004ajy.2_Missense_Mutation_p.E101K|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	101					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TTGACAGGTGGAATGGATCCA	0.438													17	51					0	0	1	0	0
FLJ43950	347127	broad.mit.edu	37	9	84530842	84530842	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:84530842C>T	uc011lst.1	+	4	864	c.763C>T	c.(763-765)CAA>TAA	p.Q255*		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						CACCCTATCCCAAGATATGAA	0.483													4	31					0	0	1	0	0
RASEF	158158	broad.mit.edu	37	9	85607846	85607846	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:85607846C>T	uc004amo.1	-	15	2276	c.2015G>A	c.(2014-2016)GGG>GAG	p.G672E		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	672					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TCCAAAGTGCCCTGGGACACA	0.483													37	95					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535541	90535541	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:90535541C>T	uc010mqi.2	+	4	748	c.719C>T	c.(718-720)CCC>CTC	p.P240L	FAM75C1_uc004apq.3_Missense_Mutation_p.P223L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						ACTCCTCCTCCCCTGCGGGAC	0.602													46	102					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536145	90536145	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:90536145G>A	uc010mqi.2	+	4	1352	c.1323G>A	c.(1321-1323)CTG>CTA	p.L441L	FAM75C1_uc004apq.3_Silent_p.L424L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						AGGAAAGACTGACATCCATTC	0.493													29	77					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90745909	90745909	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:90745909G>A	uc011lti.1	-	4	2072	c.2043C>T	c.(2041-2043)TCC>TCT	p.S681S						SubName: Full=cDNA FLJ59639;																		GCTGTATAAGGGACAAGGATG	0.537													29	87					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90746743	90746743	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:90746743C>T	uc011lti.1	-	4	1238	c.1209G>A	c.(1207-1209)AAG>AAA	p.K403K						SubName: Full=cDNA FLJ59639;																		CTAGTTGTTTCTTCAACAAAG	0.498													61	179					0	0	1	0	0
NFIL3	4783	broad.mit.edu	37	9	94172135	94172135	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:94172135G>A	uc004arh.2	-	2	1277	c.882C>T	c.(880-882)GTC>GTT	p.V294V		NM_005384	NP_005375	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	294					circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						GGCCCTTGGGGACCTGTTGCT	0.512													45	113					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95480983	95480984	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:95480983_95480984GG>AA	uc004aso.1	-	5	2000_2001	c.1943_1944CC>TT	c.(1942-1944)ACC>ATT	p.T648I	BICD2_uc004asp.1_Missense_Mutation_p.T648I	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	648					microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						ACAGCTCCGTGGTGCGGTCCAC	0.614													56	131					0	0	1	0	0
PHF2	5253	broad.mit.edu	37	9	96408008	96408008	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:96408008G>A	uc004aub.2	+	4	544	c.397G>A	c.(397-399)GAC>AAC	p.D133N	PHF2_uc011lug.1_Missense_Mutation_p.D16N	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	133					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		CCCTAAGAAAGACGGGCTGGG	0.622													14	52					0	0	1	0	0
TDRD7	23424	broad.mit.edu	37	9	100194381	100194382	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:100194381_100194382CC>TT	uc004axj.2	+	4	649_650	c.424_425CC>TT	c.(424-426)CCG>TTG	p.P142L	TDRD7_uc011lux.1_Missense_Mutation_p.P68L	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	142					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				TAATCCAGCACCGTTAAGAGAC	0.386													12	75					0	0	1	0	0
C9orf30	91283	broad.mit.edu	37	9	103212888	103212888	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:103212888C>T	uc004baw.2	+	3	535	c.468C>T	c.(466-468)TTC>TTT	p.F156F	TMEFF1_uc004bay.1_Intron|C9orf30_uc004bax.2_RNA	NM_080655	NP_542386	Q96H12	CI030_HUMAN	hypothetical protein LOC91283	156										ovary(1)	1		Acute lymphoblastic leukemia(62;0.0527)				AGAAAGAGTTCATACATTTTC	0.398													12	38					0	0	1	0	0
LPPR1	54886	broad.mit.edu	37	9	104075196	104075196	+	Silent	SNP	G	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:104075196G>T	uc004bbb.2	+	6	1152	c.753G>T	c.(751-753)CGG>CGT	p.R251R	LPPR1_uc011lvi.1_Silent_p.R227R|LPPR1_uc004bbc.2_Silent_p.R251R|LPPR1_uc010mtc.2_Silent_p.R235R	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	251						integral to membrane	catalytic activity				0						CTGAGTATCGGAACCACTGCT	0.557													26	88					1.32003e-05	1.32993e-05	1	1	0
ALDOB	229	broad.mit.edu	37	9	104193083	104193083	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:104193083C>T	uc004bbk.2	-	2	169	c.87G>A	c.(85-87)GGG>GGA	p.G29G		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	29					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CAGCCAGGATCCCCTTTCCAT	0.448													14	34					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767634	105767634	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:105767634G>A	uc004bbs.2	+	5	791	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	241	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				AAAAGCAGATGAAAAGAAGGA	0.358													11	43					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298427	107298427	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:107298427G>A	uc004bcb.1	-	1	668	c.668C>T	c.(667-669)TCC>TTC	p.S223F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	223	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						AATATTGAGGGATATATCAGC	0.393													18	63					0	0	1	0	0
OR13C9	286362	broad.mit.edu	37	9	107380372	107380372	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:107380372G>A	uc011lvr.1	-	1	114	c.114C>T	c.(112-114)ATC>ATT	p.I38I		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCCCAGAAGGATGACCACAT	0.428													13	65					0	0	1	0	0
FKTN	2218	broad.mit.edu	37	9	108380335	108380335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:108380335C>T	uc004bcr.2	+	9	1222	c.1006C>T	c.(1006-1008)CAG>TAG	p.Q336*	FKTN_uc011lvx.1_Nonsense_Mutation_p.Q336*|FKTN_uc004bcs.2_Nonsense_Mutation_p.Q336*|FKTN_uc011lvy.1_Intron|FKTN_uc010mtm.2_Nonsense_Mutation_p.Q204*	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	336	Lumenal (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						TTTAGCATTTCAGGATGCAGG	0.328													9	14					0	0	1	0	0
ACTL7A	10881	broad.mit.edu	37	9	111625419	111625419	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:111625419G>A	uc004bdj.1	+	1	817	c.817G>A	c.(817-819)GAG>AAG	p.E273K		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	273						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						GGGCATCGTGGAGGACATCAA	0.582													20	41					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112694261	112694261	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:112694261G>A	uc004bei.2	+	6	641	c.449G>A	c.(448-450)CGA>CAA	p.R150Q	PALM2_uc004bef.2_Missense_Mutation_p.R152Q|PALM2_uc004beg.2_Intron|PALM2_uc004beh.3_Missense_Mutation_p.R150Q|PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.R150Q|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.R150Q|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CTCTGTTCACGAACAGCAGAA	0.537													38	87					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113141782	113141783	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:113141782_113141783GG>AA	uc010mtz.2	-	44	10589_10590	c.10252_10253CC>TT	c.(10252-10254)CCA>TTA	p.P3418L	SVEP1_uc010mty.2_Missense_Mutation_p.P1344L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3418	Sushi 34.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GTGAGCTGGTGGACCACATGAG	0.401													7	32					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114135609	114135609	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:114135609C>T	uc004bfe.1	-	41	4789	c.4789G>A	c.(4789-4791)GGC>AGC	p.G1597S		NM_001080398	NP_001073867			KIAA0368 protein												0						ACTAAATGGCCCATAGCAAAT	0.358													30	85					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114304474	114304474	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:114304474C>T	uc004bff.2	+	6	1483	c.1259C>T	c.(1258-1260)TCA>TTA	p.S420L	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	420					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						CGGAAAGATTCATGTCAAGAA	0.383													28	60					0	0	1	0	0
ROD1	9991	broad.mit.edu	37	9	115024768	115024768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:115024768G>A	uc004bfw.2	-	6	734	c.547C>T	c.(547-549)CGA>TGA	p.R183*	ROD1_uc004bfv.2_Nonsense_Mutation_p.R189*|ROD1_uc004bfx.2_Nonsense_Mutation_p.R186*|ROD1_uc011lwu.1_Nonsense_Mutation_p.R155*|ROD1_uc004bfy.2_Nonsense_Mutation_p.R88*|ROD1_uc004bfz.2_Nonsense_Mutation_p.R155*	NM_005156	NP_005147	O95758	ROD1_HUMAN	ROD1 regulator of differentiation 1 isoform 1	183	RRM 2.				anatomical structure morphogenesis|mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1						ATAATTATTCGAAGCACAGGG	0.468													14	43					0	0	1	0	0
ZFP37	7539	broad.mit.edu	37	9	115818872	115818872	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:115818872C>T	uc004bgm.1	-	1	125	c.97G>A	c.(97-99)GAG>AAG	p.E33K	ZFP37_uc011lwz.1_Missense_Mutation_p.E33K|ZFP37_uc011lxa.1_Missense_Mutation_p.E33K	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	33	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACAGCCATCTCCAGTGGTCGC	0.622													41	135					0	0	1	0	0
WDR31	114987	broad.mit.edu	37	9	116085403	116085403	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:116085403G>A	uc004bhe.2	-	6	609	c.357C>T	c.(355-357)TTC>TTT	p.F119F	WDR31_uc004bhc.2_Silent_p.F118F|WDR31_uc004bhd.2_5'UTR|WDR31_uc004bhf.2_RNA	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	119	WD 2.										0						GAGAGGCACTGAAGAACTGGC	0.498													15	35					0	0	1	0	0
BSPRY	54836	broad.mit.edu	37	9	116122940	116122940	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:116122940G>A	uc004bhg.3	+	3	502	c.454G>A	c.(454-456)GAG>AAG	p.E152K	BSPRY_uc010muw.2_Missense_Mutation_p.E152K	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	152					calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						GCACTGGGCCGAGGCGCTGCA	0.612													4	11					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	117063403	117063403	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:117063403C>T	uc011lxl.1	+	52	4753	c.4753C>T	c.(4753-4755)CCG>TCG	p.P1585S	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1585	Pro-rich.|Collagen-like 16.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						TTCGGGACTCCCGGTATGTGT	0.542													17	50					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117848948	117848948	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:117848948G>A	uc004bjj.3	-	3	1424	c.1062C>T	c.(1060-1062)GGC>GGT	p.G354G	TNC_uc010mvf.2_Silent_p.G354G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	354	EGF-like 7.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CCTCACACCGGCCCTGGGTGT	0.617													15	65					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119124970	119124970	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:119124970G>A	uc004bjn.2	+	18	4828	c.4447G>A	c.(4447-4449)GAG>AAG	p.E1483K	PAPPA_uc011lxq.1_Missense_Mutation_p.E858K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1483	Sushi 5.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGTTCCAAACGAGCTCAACAG	0.557													16	34					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	120053784	120053784	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:120053784C>A	uc004bjs.1	-	2	552	c.451G>T	c.(451-453)GGC>TGC	p.G151C	ASTN2_uc004bjr.1_Missense_Mutation_p.G151C|ASTN2_uc004bjt.1_Missense_Mutation_p.G151C	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	151	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCTGCTGTGCCAGACATCTCT	0.597													4	45					0.150653	0.150814	1	1	0
TLR4	7099	broad.mit.edu	37	9	120476213	120476213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:120476213G>A	uc004bjz.2	+	3	2098	c.1807G>A	c.(1807-1809)GAA>AAA	p.E603K	TLR4_uc004bka.2_Missense_Mutation_p.E563K|TLR4_uc004bkb.2_Missense_Mutation_p.E403K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	603	LRRCT.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GCTCTTGGTGGAAGTTGAACG	0.433													6	22					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476846	120476846	+	Missense_Mutation	SNP	G	A	A	rs55751501		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:120476846G>A	uc004bjz.2	+	3	2731	c.2440G>A	c.(2440-2442)GCC>ACC	p.A814T	TLR4_uc004bka.2_Missense_Mutation_p.A774T|TLR4_uc004bkb.2_Missense_Mutation_p.A614T	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	814	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity	p.A814T(1)		lung(10)|ovary(4)|breast(1)|skin(1)	16						ACTCAGAAAAGCCCTGCTGGA	0.512													39	101					0	0	1	0	0
GSN	2934	broad.mit.edu	37	9	124062268	124062268	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:124062268G>A	uc004blf.1	+	1	190	c.129G>A	c.(127-129)CGG>CGA	p.R43R	GSN_uc004bld.1_Intron|GSN_uc010mvq.1_Intron|GSN_uc010mvr.1_Intron|GSN_uc010mvu.1_Intron|GSN_uc010mvt.1_Intron|GSN_uc010mvs.1_Intron|GSN_uc004ble.1_Intron|GSN_uc010mvv.1_Intron|GSN_uc011lyh.1_Intron|GSN_uc011lyi.1_Intron|GSN_uc011lyj.1_5'Flank	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	43					actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						cccaggggcgggtgcccgagg	0.368													4	6					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330650	125330650	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:125330650T>C	uc004bmp.1	-	1	107	c.107A>G	c.(106-108)TAC>TGC	p.Y36C		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						GGTGACCAGGTACACGATGAG	0.502													23	60					0	0	1	0	0
OR1B1	347169	broad.mit.edu	37	9	125391017	125391017	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:125391017G>A	uc011lyz.1	-	1	798	c.798C>T	c.(796-798)TTC>TTT	p.F266F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	266	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGAGGCTGGAAGTAGACAC	0.522													18	51					0	0	1	0	0
OR1B1	347169	broad.mit.edu	37	9	125391605	125391605	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:125391605C>T	uc011lyz.1	-	1	210	c.210G>A	c.(208-210)GTG>GTA	p.V70V		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATGTCTATCACAGAGAGGC	0.542													17	25					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126134476	126134476	+	Silent	SNP	T	C	C			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:126134476T>C	uc004bnx.1	+	9	2549	c.2457T>C	c.(2455-2457)GGT>GGC	p.G819G	CRB2_uc004bnw.1_Silent_p.G819G	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	819	Extracellular (Potential).|EGF-like 11.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GTTTCAATGGTGGGACTTGCC	0.592													10	31					0	0	1	0	0
DENND1A	57706	broad.mit.edu	37	9	126143867	126143867	+	Silent	SNP	C	G	G			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:126143867C>G	uc004bnz.1	-	22	3107	c.2874G>C	c.(2872-2874)CTG>CTC	p.L958L	DENND1A_uc011lzl.1_Silent_p.L776L|DENND1A_uc004bny.1_Silent_p.L740L|DENND1A_uc011lzm.1_Silent_p.L969L|DENND1A_uc010mwh.1_Silent_p.L379L	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	958	Pro-rich.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						GTGTTGGCTCCAGGCCTTGAG	0.652													8	33					0	0	1	0	0
NR6A1	2649	broad.mit.edu	37	9	127302395	127302395	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:127302395G>A	uc004bor.1	-	5	691	c.513C>T	c.(511-513)AAC>AAT	p.N171N	NR6A1_uc004boq.1_Silent_p.N167N|NR6A1_uc010mwq.1_Silent_p.N167N	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	171					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TATCACCATGGTTGCTCCAGT	0.498													40	94					0	0	1	0	0
LMX1B	4010	broad.mit.edu	37	9	129453307	129453307	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:129453307G>A	uc004bqj.2	+	3	500	c.450G>A	c.(448-450)AAG>AAA	p.K150K	LMX1B_uc004bqi.2_Silent_p.K150K|LMX1B_uc011maa.1_Silent_p.K150K	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	150					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGGAGAAGGACCTGCTCA	0.657									Nail-Patella_Syndrome				5	15					0	0	1	0	0
ENG	2022	broad.mit.edu	37	9	130587172	130587172	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:130587172G>A	uc004bsj.3	-	7	1311	c.898C>T	c.(898-900)CTG>TTG	p.L300L	ENG_uc011mam.1_Silent_p.L111L|ENG_uc004bsk.3_Silent_p.L300L	NM_001114753	NP_001108225	P17813	EGLN_HUMAN	endoglin isoform 1 precursor	300	Extracellular (Potential).				artery morphogenesis|BMP signaling pathway|cell adhesion|cell chemotaxis|central nervous system vasculogenesis|chronological cell aging|detection of hypoxia|extracellular matrix disassembly|heart looping|negative regulation of endothelial cell proliferation|negative regulation of nitric-oxide synthase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of protein autophosphorylation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|patterning of blood vessels|positive regulation of BMP signaling pathway|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of systemic arterial blood pressure|positive regulation of transcription from RNA polymerase II promoter|regulation of cell adhesion|regulation of cell proliferation|regulation of transcription, DNA-dependent|regulation of transforming growth factor beta receptor signaling pathway|smooth muscle tissue development|transforming growth factor beta receptor signaling pathway|venous blood vessel morphogenesis|wound healing	cell surface|external side of plasma membrane|extracellular space|membrane fraction	activin binding|galactose binding|glycosaminoglycan binding|protein homodimerization activity|transforming growth factor beta binding|transforming growth factor beta receptor activity|transforming growth factor beta receptor, cytoplasmic mediator activity|transmembrane receptor activity|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding				0						GCCTCCCCCAGGAGGCCTTGA	0.557									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				18	46					0	0	1	0	0
CRAT	1384	broad.mit.edu	37	9	131862950	131862950	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:131862950G>A	uc004bxh.2	-	7	1106	c.824C>T	c.(823-825)TCC>TTC	p.S275F	CRAT_uc004bxg.2_Missense_Mutation_p.S254F|CRAT_uc004bxk.3_Missense_Mutation_p.S254F	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	275					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	GGAGCGCACGGAATCCCGGTT	0.617													6	23					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136315052	136315052	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:136315052C>T	uc004cdv.3	+	23	3454	c.3010C>T	c.(3010-3012)CAG>TAG	p.Q1004*	ADAMTS13_uc004cdp.3_Nonsense_Mutation_p.Q231*|ADAMTS13_uc004cdt.1_Nonsense_Mutation_p.Q1004*|ADAMTS13_uc004cdu.1_Nonsense_Mutation_p.Q973*|ADAMTS13_uc004cdw.3_Nonsense_Mutation_p.Q1004*|ADAMTS13_uc004cdx.3_Nonsense_Mutation_p.Q973*|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Nonsense_Mutation_p.Q674*	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1004	TSP type-1 6.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCCGGAACCCCAGGAGGCCTG	0.622													10	14					0	0	1	0	0
BRD3	8019	broad.mit.edu	37	9	136899928	136899928	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:136899928C>T	uc004cew.2	-	11	2148	c.1960G>A	c.(1960-1962)GCC>ACC	p.A654T		NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	654	Potential.					nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		TTCGACTTGGCTGCCTGTTTC	0.602			T	NUT|C15orf55	lethal midline carcinoma of young people								40	96					0	0	1	0	0
FCN2	2220	broad.mit.edu	37	9	137777697	137777697	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:137777697G>A	uc004cfg.1	+	6	523	c.513G>A	c.(511-513)GGG>GGA	p.G171G	FCN2_uc004cfh.1_Silent_p.G133G	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	171	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GTCGGCTGGGGGAGTTCTGGC	0.672													14	58					0	0	1	0	0
LHX3	8022	broad.mit.edu	37	9	139091705	139091705	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:139091705G>A	uc004cha.2	-	3	370	c.273C>T	c.(271-273)GCC>GCT	p.A91A	LHX3_uc004cgz.2_Silent_p.A96A	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	91	LIM zinc-binding 2.				inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		GCTGGCACGCGGCGCACTTGG	0.711													6	10					0	0	1	0	0
LCN8	138307	broad.mit.edu	37	9	139650977	139650977	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:139650977G>A	uc004cjb.1	-	3	572	c.223C>T	c.(223-225)CCT>TCT	p.P75S	LCN8_uc004cja.2_5'Flank|LCN8_uc004cjc.1_Missense_Mutation_p.P75S	NM_178469	NP_848564	Q6JVE9	LCN8_HUMAN	lipocalin 8	98					transport	extracellular region	binding			pancreas(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;5.56e-06)|Epithelial(140;8.32e-05)		CACTTACCAGGAAAAGCGAAT	0.448													32	83					0	0	1	0	0
EXD3	54932	broad.mit.edu	37	9	140201409	140201409	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:140201409G>A	uc004cmp.2	-	22	2820	c.2624C>T	c.(2623-2625)CCC>CTC	p.P875L	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Missense_Mutation_p.P513L	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	875					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						TCCTCAGAAGGGACTGCTGGC	0.652													8	24					0	0	1	0	0
MRPL41	64975	broad.mit.edu	37	9	140446713	140446713	+	Silent	SNP	C	T	T	rs12834		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:140446713C>T	uc004cnh.3	+	2	310	c.180C>T	c.(178-180)TTC>TTT	p.F60F	PNPLA7_uc010ncj.1_5'Flank|PNPLA7_uc004cnf.2_5'Flank	NM_032477	NP_115866	Q8IXM3	RM41_HUMAN	mitochondrial ribosomal protein L41	60					apoptosis|cell cycle|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome				0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000415)|Epithelial(140;0.00106)		TCCCGGAGTTCGTCGTCCCGG	0.677													8	26					0	0	1	0	0
ARRDC1	92714	broad.mit.edu	37	9	140508890	140508890	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:140508890C>T	uc004cns.2	+	6	832	c.758C>T	c.(757-759)CCG>CTG	p.P253L	ARRDC1_uc004cnt.2_Missense_Mutation_p.P128L|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Missense_Mutation_p.P233L|ARRDC1_uc004cnw.2_Missense_Mutation_p.P128L|ARRDC1_uc004cnp.1_Missense_Mutation_p.P253L|ARRDC1_uc004cnq.1_Missense_Mutation_p.P235L|ARRDC1_uc011mfb.1_Missense_Mutation_p.P128L|ARRDC1_uc004cnx.1_Missense_Mutation_p.P128L|ARRDC1_uc004cny.2_RNA	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	253											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		TCGGCCCTGCCGGGCTGCAGC	0.682													26	73					0	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071482	141071482	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr9:141071482C>T	uc004com.2	+	4	1146	c.885C>T	c.(883-885)TTC>TTT	p.F295F	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						CAGCCAGCTTCATTGGGAATA	0.522													15	51					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1428361	1428361	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:1428361G>A	uc010nct.2	+	14	1514	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K	CSF2RA_uc004cpq.2_3'UTR|CSF2RA_uc004cpn.2_Missense_Mutation_p.E398K|CSF2RA_uc004cpo.2_Missense_Mutation_p.E398K|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.E265K|CSF2RA_uc004cpp.2_Missense_Mutation_p.G338E|CSF2RA_uc010ncv.2_Missense_Mutation_p.E432K|CSF2RA_uc004cpr.2_3'UTR	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	398	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GACCGTGAAGGAAATTACCTG	0.512													51	144					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3227926	3227926	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:3227926G>A	uc004crg.3	-	7	8475	c.8318C>T	c.(8317-8319)TCG>TTG	p.S2773L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2773	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTCAGATGCGACTTATCCGG	0.562													16	25					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240320	3240320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:3240320C>T	uc004crg.3	-	5	3563	c.3406G>A	c.(3406-3408)GTT>ATT	p.V1136I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1136						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GACGGAGCAACTTTTTGCCTT	0.512													28	17					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17750517	17750517	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:17750517C>T	uc004cxx.2	+	8	5164	c.4826C>T	c.(4825-4827)TCC>TTC	p.S1609F	NHS_uc011mix.1_Missense_Mutation_p.S1630F|NHS_uc004cxy.2_Missense_Mutation_p.S1453F|NHS_uc004cxz.2_Missense_Mutation_p.S1432F|NHS_uc004cya.2_Missense_Mutation_p.S1332F	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1609						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CAGGCAATCTCCGAGGGAGAG	0.602													26	24					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21550134	21550134	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:21550134G>A	uc004czx.1	+	11	1288	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K	CNKSR2_uc004czw.2_Missense_Mutation_p.E418K|CNKSR2_uc011mjn.1_Missense_Mutation_p.E369K|CNKSR2_uc011mjo.1_Missense_Mutation_p.E418K|CNKSR2_uc004czy.2_Missense_Mutation_p.E40K	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	418	DUF1170.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CTATGAATATGAAAAAGGAAG	0.338													34	25					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212144	26212144	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:26212144C>T	uc004dbr.2	+	2	330	c.181C>T	c.(181-183)CCT>TCT	p.P61S	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	61	Ser-rich.									ovary(3)	3						TGCCTCCATTCCTCAGGAGTC	0.532													25	17					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	31196793	31196793	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:31196793T>A	uc004dda.1	-	70	10460	c.10216A>T	c.(10216-10218)ATG>TTG	p.M3406L	DMD_uc004dcq.1_Missense_Mutation_p.M677L|DMD_uc004dcr.1_Intron|DMD_uc004dcs.1_Missense_Mutation_p.M946L|DMD_uc004dct.1_Missense_Mutation_p.M946L|DMD_uc004dcu.1_Missense_Mutation_p.M946L|DMD_uc004dcv.1_Missense_Mutation_p.M946L|DMD_uc004dcw.2_Missense_Mutation_p.M2062L|DMD_uc004dcx.2_Missense_Mutation_p.M2065L|DMD_uc004dcz.2_Missense_Mutation_p.M3283L|DMD_uc004dcy.1_Missense_Mutation_p.M3402L|DMD_uc004ddb.1_Missense_Mutation_p.M3398L|DMD_uc004dcm.1_Missense_Mutation_p.M338L|DMD_uc004dcn.1_Missense_Mutation_p.M338L|DMD_uc004dco.1_Missense_Mutation_p.M338L|DMD_uc004dcp.1_Missense_Mutation_p.M338L|DMD_uc011mkb.1_Missense_Mutation_p.M338L|DMD_uc010ngm.2_Missense_Mutation_p.M338L	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3406	Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CACGTTTCCATGTTGTCCCCC	0.448													19	47					0	0	1	0	0
FAM47B	170062	broad.mit.edu	37	X	34962010	34962010	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:34962010G>A	uc004ddi.1	+	1	1080	c.1062G>A	c.(1060-1062)GAG>GAA	p.E354E		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	354										ovary(3)|breast(1)	4						TGGATTCTGAGAAGAAGCTGG	0.557													21	13					0	0	1	0	0
CASK	8573	broad.mit.edu	37	X	41646435	41646435	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:41646435C>T	uc004dfl.3	-	3	320	c.274G>A	c.(274-276)GAA>AAA	p.E92K	CASK_uc004dfm.3_Missense_Mutation_p.E92K|CASK_uc004dfn.3_Missense_Mutation_p.E92K	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	92	Protein kinase.				cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						ACTCACAATTCGAAAACCATG	0.358													24	12					0	0	1	0	0
EFHC2	80258	broad.mit.edu	37	X	44109483	44109483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:44109483C>T	uc004dgb.3	-	6	905	c.815G>A	c.(814-816)CGA>CAA	p.R272Q		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	272	DM10 2.						calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						TAGAGCATCTCGGCCTGAGCT	0.438													8	5					0	0	1	0	0
SSX5	6758	broad.mit.edu	37	X	48049680	48049680	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:48049680C>T	uc004dja.1	-	6	408	c.355G>A	c.(355-357)GAA>AAA	p.E119K	SSX5_uc004diz.1_Missense_Mutation_p.E160K	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCATTTCCTTCCTCTGCTGGC	0.383													50	40					0	0	1	0	0
GLOD5	392465	broad.mit.edu	37	X	48624362	48624362	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:48624362G>A	uc011mmh.1	+	2	227	c.186G>A	c.(184-186)GAG>GAA	p.E62E	GLOD5_uc004dko.1_Silent_p.E62E	NM_001080489	NP_001073958			glyoxalase domain containing 5												0						TGGGCATGGAGGTCATGACTT	0.418													4	0					0	0	1	0	0
FAAH2	158584	broad.mit.edu	37	X	57473463	57473463	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:57473463C>T	uc004dvc.2	+	9	1368	c.1219C>T	c.(1219-1221)CCT>TCT	p.P407S		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	407						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GTACACCATCCCTTCCATTGG	0.343										HNSCC(52;0.14)			6	7					0	0	1	0	0
STARD8	9754	broad.mit.edu	37	X	67942004	67942004	+	Splice_Site	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:67942004G>A	uc004dxa.2	+	10	2706	c.2334_splice	c.e10+1	p.Q778_splice	STARD8_uc004dxb.2_Splice_Site_p.Q858_splice|STARD8_uc004dxc.3_Splice_Site_p.Q778_splice	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						ACTTTTCCAGGTGAGTAACCC	0.572													10	5					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71870278	71870278	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:71870278C>T	uc004eax.3	-	13	1587	c.1286G>A	c.(1285-1287)AGG>AAG	p.R429K	PHKA1_uc004eay.3_Missense_Mutation_p.R429K|PHKA1_uc011mqi.1_Missense_Mutation_p.R429K	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	429					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					AGTAGAAAACCTGCGATTCAG	0.378													10	8					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433851	72433851	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:72433851C>T	uc004ebi.2	-	1	834	c.478G>A	c.(478-480)GAA>AAA	p.E160K	NAP1L2_uc011mqj.1_Missense_Mutation_p.E18K	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	160	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCTGTAGGTTCATAGATTGCA	0.383													46	27					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046579	73046579	+	RNA	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:73046579C>T	uc004ebn.2	+	1		c.34540C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATACCTTTTTCGCTTGGGTCC	0.517													41	25					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73062652	73062652	+	RNA	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:73062652G>A	uc004ebm.1	-	1		c.9937C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGGGCAGAGGGAAGGGAAGAG	0.483													22	15					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962043	73962043	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:73962043C>T	uc004eby.2	-	3	2966	c.2349G>A	c.(2347-2349)AAG>AAA	p.K783K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	783					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AAGTGGAACTCTTAGCAGCCT	0.408													33	26					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003703	75003703	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:75003703C>T	uc004ecj.1	-	1	1369	c.1184G>A	c.(1183-1185)AGC>AAC	p.S395N		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	395	MAGE 2.									ovary(1)|skin(1)	2						TCTCCCCAGGCTCTCTAGCAT	0.478													38	43					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84520135	84520135	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:84520135A>T	uc004eeo.2	+	6	1137	c.790A>T	c.(790-792)ATT>TTT	p.I264F	ZNF711_uc004eep.2_Missense_Mutation_p.I264F|ZNF711_uc004eeq.2_Missense_Mutation_p.I264F|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	264				IVT -> MSP (in Ref. 4; CAA39837).	positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TGGAACAGAAATTGTCACAGA	0.368													12	9					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84559418	84559419	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:84559418_84559419GA>AG	uc004eer.2	-	14	1642_1643	c.1496_1497TC>CT	c.(1495-1497)TTC>TCT	p.F499S	POF1B_uc004ees.2_Missense_Mutation_p.F499S	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	499							actin binding				0						GCTTAAATTGGAAGTCACTACA	0.342													7	8					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84601024	84601024	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:84601024G>A	uc004eer.2	-	6	711	c.565C>T	c.(565-567)CAT>TAT	p.H189Y	POF1B_uc004ees.2_Missense_Mutation_p.H189Y	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	189							actin binding				0						ATGTGATGATGGCATTGAGCC	0.433													15	11					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873377	91873377	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:91873377C>T	uc004efk.1	+	7	4327	c.3482C>T	c.(3481-3483)TCC>TTC	p.S1161F	PCDH11X_uc004efl.1_Missense_Mutation_p.S1151F|PCDH11X_uc004efo.1_Missense_Mutation_p.S1124F|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.S1153F|PCDH11X_uc004efn.1_Missense_Mutation_p.S1143F	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1161	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CTGGATCATTCCAGCTCTTCG	0.547													17	15					0	0	1	0	0
TEX13A	56157	broad.mit.edu	37	X	104464727	104464727	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:104464727C>T	uc004ema.2	-	2	467	c.355G>A	c.(355-357)GAG>AAG	p.E119K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E119K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	119						intracellular	zinc ion binding			ovary(2)	2						CGTTCCGTCTCCTGCTGCTCC	0.607													9	11					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105179175	105179175	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:105179175C>T	uc004emd.2	+	21	3816	c.3513C>T	c.(3511-3513)TTC>TTT	p.F1171F	NRK_uc010npc.1_Silent_p.F839F	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1171							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						ACGCTGGATTCGTAGAAGTAC	0.373										HNSCC(51;0.14)			50	21					0	0	1	0	0
RNF128	79589	broad.mit.edu	37	X	106028359	106028359	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:106028359G>A	uc004eml.2	+	3	1047	c.797G>A	c.(796-798)GGA>GAA	p.G266E	RNF128_uc004emk.2_Missense_Mutation_p.G240E	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	266						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CTGAAACAAGGAGACAAGGTA	0.343													28	22					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107840784	107840784	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:107840784C>T	uc004enz.1	+	24	1967	c.1765C>T	c.(1765-1767)CCG>TCG	p.P589S	COL4A5_uc011mso.1_Missense_Mutation_p.P589S|COL4A5_uc004eob.1_Missense_Mutation_p.P197S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	589	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GCTTCCTGGCCCGAAAGGAGA	0.458									Alport_syndrome_with_Diffuse_Leiomyomatosis				11	16					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107923973	107923973	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:107923973G>A	uc004enz.1	+	44	4209	c.4007G>A	c.(4006-4008)GGA>GAA	p.G1336E	COL4A5_uc011mso.1_Missense_Mutation_p.G1333E|COL4A5_uc011msp.1_Missense_Mutation_p.G12E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1330	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGTGTTCCAGGATTCCCAGGT	0.408									Alport_syndrome_with_Diffuse_Leiomyomatosis				20	14					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109697734	109697734	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:109697734C>T	uc004eor.1	+	3	4135	c.3889C>T	c.(3889-3891)CTA>TTA	p.L1297L	RGAG1_uc011msr.1_Silent_p.L1297L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1297										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GGCTGGCAGCCTAAAGGAGCT	0.532													38	26					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141178	114141178	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:114141178G>A	uc004epu.1	+	6	1305	c.577G>A	c.(577-579)GGA>AGA	p.G193R	HTR2C_uc010nqc.1_Missense_Mutation_p.G193R|HTR2C_uc004epv.1_Nonsense_Mutation_p.W161*	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	193	Helical; Name=4; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	CCCTGTGATTGGACTGAGGGA	0.443													35	23					0	0	1	0	0
LRCH2	57631	broad.mit.edu	37	X	114357656	114357656	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:114357656C>T	uc010nqe.2	-	18	1980	c.1949G>A	c.(1948-1950)CGA>CAA	p.R650Q	LRCH2_uc004epz.2_Missense_Mutation_p.R633Q	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	650	CH.									ovary(1)	1						GCGAAGTTGTCGTATTTGCTC	0.413													8	5					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117695433	117695433	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:117695433G>A	uc004eqp.2	+	7	709	c.646G>A	c.(646-648)GAA>AAA	p.E216K	DOCK11_uc004eqq.2_5'UTR	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	216	PH.				blood coagulation	cytosol	GTP binding			ovary(3)	3						AAATTCAAAAGAATCGAAAGG	0.368													20	17					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120009233	120009233	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:120009233C>T	uc011muc.1	-	1	547	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	98	Poly-Glu.										0						ttcccctcttcctcctcctcc	0.587													9	6					0	0	1	0	0
THOC2	57187	broad.mit.edu	37	X	122756641	122756642	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:122756641_122756642CC>TT	uc004etu.2	-	30	3784_3785	c.3752_3753GG>AA	c.(3751-3753)GGG>GAA	p.G1251E	THOC2_uc010nqt.1_5'Flank|THOC2_uc004etw.1_Missense_Mutation_p.G72E	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1251					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TGCTTGAATTCCCTTTAGGTGT	0.312													3	8					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123539080	123539080	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:123539080C>T	uc004euj.2	-	26	5235	c.5171G>A	c.(5170-5172)GGT>GAT	p.G1724D	ODZ1_uc011muj.1_Missense_Mutation_p.G1730D|ODZ1_uc010nqy.2_Missense_Mutation_p.G1731D	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1724	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACGCAGGGAACCATCTGGATT	0.542													19	15					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123630908	123630908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:123630908C>T	uc004euj.2	-	20	3717	c.3653G>A	c.(3652-3654)AGA>AAA	p.R1218K	ODZ1_uc011muj.1_Missense_Mutation_p.R1217K|ODZ1_uc010nqy.2_Missense_Mutation_p.R1218K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1218	NHL 1.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding	p.V1218I(1)		ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGGAAATATTCTCCTTACAAA	0.413													14	16					0	0	1	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299291	125299291	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:125299291G>A	uc004euk.1	-	1	644	c.617C>T	c.(616-618)ACC>ATC	p.T206I		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	206	WD 2.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CACAGCTACGGTGTCACTCAG	0.652													20	14					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685224	125685224	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:125685224C>T	uc004eul.2	-	1	1619	c.1368G>A	c.(1366-1368)GGG>GGA	p.G456G		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	456										skin(3)|ovary(1)	4						CTGCATAGTTCCCATGGAGGC	0.547													39	32					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129159089	129159089	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:129159089C>T	uc004evb.1	+	7	3927	c.3813C>T	c.(3811-3813)ACC>ACT	p.T1271T	BCORL1_uc010nrd.1_Intron|BCORL1_uc004evc.1_Silent_p.T33T	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1271					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TGAGAAAGACCCAACGGGACA	0.597													29	19					0	0	1	0	0
OR13H1	347468	broad.mit.edu	37	X	130678378	130678378	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:130678378G>A	uc011muw.1	+	1	331	c.331G>A	c.(331-333)GAG>AAG	p.E111K	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					GGCCACAGCAGAGTGCCTCCT	0.527													34	20					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134990687	134990687	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:134990687G>A	uc004ezh.2	+	12	1519	c.1352G>A	c.(1351-1353)CGA>CAA	p.R451Q	SAGE1_uc010nry.1_Missense_Mutation_p.R420Q|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	451										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATGGCCAACGAAAACAGGAT	0.428													38	19					0	0	1	0	0
FGF13	2258	broad.mit.edu	37	X	137717682	137717682	+	Silent	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:137717682G>A	uc004fam.2	-	4	1199	c.537C>T	c.(535-537)ATC>ATT	p.I179I	FGF13_uc004fan.2_Silent_p.I126I|FGF13_uc011mwi.1_Silent_p.I160I|FGF13_uc004faq.2_Silent_p.I189I|FGF13_uc004far.2_Silent_p.I160I|FGF13_uc011mwj.1_Silent_p.I189I|FGF13_uc011mwk.1_Silent_p.I133I	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	179					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGCCTTTCATGATCTCTCCTT	0.413													27	18					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795479	142795479	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:142795479G>A	uc004fbz.2	-	2	953	c.199C>T	c.(199-201)CAA>TAA	p.Q67*		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	67										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTCCAGTTGATTTGAATTT	0.438													69	57					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303687	151303687	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:151303687C>T	uc004ffk.2	-	5	814	c.406G>A	c.(406-408)GAA>AAA	p.E136K	MAGEA10_uc004ffl.2_Missense_Mutation_p.E136K	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	136	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GTCACCTTTTCATCTATCTCA	0.453													52	28					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303843	151303843	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:151303843G>A	uc004ffk.2	-	5	658	c.250C>T	c.(250-252)CCC>TCC	p.P84S	MAGEA10_uc004ffl.2_Missense_Mutation_p.P84S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	84											0	Acute lymphoblastic leukemia(192;6.56e-05)					GCACTCTGGGGAGGATTTGGT	0.438													75	60					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303845	151303845	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:151303845G>A	uc004ffk.2	-	5	656	c.248C>T	c.(247-249)CCT>CTT	p.P83L	MAGEA10_uc004ffl.2_Missense_Mutation_p.P83L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	83											0	Acute lymphoblastic leukemia(192;6.56e-05)					ACTCTGGGGAGGATTTGGTGT	0.428													75	58					0	0	1	0	0
GAB3	139716	broad.mit.edu	37	X	153924289	153924289	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:153924289C>T	uc004fmj.1	-	8	1478	c.1430G>A	c.(1429-1431)CGA>CAA	p.R477Q	GAB3_uc004fmk.1_Missense_Mutation_p.R478Q|GAB3_uc010nve.1_Missense_Mutation_p.R478Q|GAB3_uc004fml.1_Missense_Mutation_p.R97Q	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	477										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AAAGCTGGTTCGACTGCTAAG	0.418													3	5					0	0	1	0	0
F8A1	8263	broad.mit.edu	37	X	154115738	154115738	+	Silent	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:154115738C>T	uc004fmv.2	+	1	1089	c.1089C>T	c.(1087-1089)ACC>ACT	p.T363T	F8_uc004fmt.2_Intron|F8_uc004fms.2_5'Flank|MIR1184_hsa-mir-1184-1|MI0006277_5'Flank	NM_001007524	NP_001007525	P23610	F8I2_HUMAN	coagulation factor VIII-associated (intronic	363						nucleus	binding				0	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGCAAGAAACCATCTCCCCCT	0.527													45	171					0	0	1	0	0
RPS4Y1	6192	broad.mit.edu	37	Y	2712265	2712265	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrY:2712265C>T	uc004fqi.2	+	3	272	c.229C>T	c.(229-231)CGA>TGA	p.R77*		NM_001008	NP_000999	P22090	RS4Y1_HUMAN	ribosomal protein S4, Y-linked 1 Y isoform	77	S4 RNA-binding.				endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|polysome	rRNA binding|structural constituent of ribosome				0						TGGCAAGGTTCGAGTGGATGT	0.423													43	26					0	0	1	0	0
UTY	7404	broad.mit.edu	37	Y	15410906	15410906	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrY:15410906C>T	uc004fsx.1	-	24	4513	c.3508G>A	c.(3508-3510)GGC>AGC	p.G1170S	UTY_uc004fsw.1_Missense_Mutation_p.G833S|UTY_uc010nwx.1_Missense_Mutation_p.G227S|UTY_uc004fsy.2_Missense_Mutation_p.G1170S	NM_007125	NP_009056	O14607	UTY_HUMAN	tetratricopeptide repeat protein isoform 3	1170	JmjC.				chromatin modification	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TGCACAGTGCCTGCATTTATC	0.423													8	3					0	0	1	0	0
SAMD11	148398	broad.mit.edu	37	1	874816	874817	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr1:874816_874817insT	uc001abw.1	+	7	762_763	c.682_683insT	c.(682-684)CCCfs	p.P228fs	SAMD11_uc001abx.1_Intron	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	228						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CTGGCATGATCCCCCTCATCAC	0.644													7	21	---	---	---	---					
UBXN1	51035	broad.mit.edu	37	11	62445468	62445468	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr11:62445468delA	uc001nul.1	-	5	545	c.413delT	c.(412-414)CTAfs	p.L138fs	UBXN1_uc001nuj.2_Frame_Shift_Del_p.L138fs|UBXN1_uc001num.1_Frame_Shift_Del_p.L138fs|UBXN1_uc001nuk.2_Frame_Shift_Del_p.L103fs|UBXN1_uc010rme.1_Frame_Shift_Del_p.L138fs|UBXN1_uc010rmf.1_3'UTR	NM_015853	NP_056937	Q04323	UBXN1_HUMAN	UBX domain protein 1	138	Potential.|Interaction with BRCA1.				negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process	cytoplasm	ATPase binding|K6-linked polyubiquitin binding				0						ATCTTCCTGTAGCCGCTGTCG	0.597													16	38	---	---	---	---					
C15orf51	196968	broad.mit.edu	37	15	100340123	100340125	+	RNA	DEL	AGA	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr15:100340123_100340125delAGA	uc010urx.1	-	4		c.802_804delTCT			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|C15orf51_uc010bow.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						AGCAGCTCCGAGAAGATGAACTC	0.611													7	25	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													4	2	---	---	---	---					
NCAM2	4685	broad.mit.edu	37	21	22910226	22910226	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr21:22910226delT	uc002yld.1	+	18	2711	c.2462delT	c.(2461-2463)ATTfs	p.I821fs	NCAM2_uc011acb.1_Frame_Shift_Del_p.I679fs	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	821	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		ACTATAGAAATTAAAGTTTCT	0.323													19	64	---	---	---	---					
CENPE	1062	broad.mit.edu	37	4	104061189	104061189	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr4:104061189delT	uc003hxb.1	-	38	6051	c.5961delA	c.(5959-5961)GAAfs	p.E1987fs	CENPE_uc003hxc.1_Intron|CENPE_uc003hxd.1_Intron	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1987	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TATTGACATCTTCTTTCACTC	0.328													11	28	---	---	---	---					
ZNF777	27153	broad.mit.edu	37	7	149152619	149152620	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chr7:149152619_149152620delAG	uc003wfv.2	-	2	657_658	c.494_495delCT	c.(493-495)CCTfs	p.P165fs		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	165					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			AGATCTGGAAAGGGGTGTCCTT	0.604													47	140	---	---	---	---					
SMS	6611	broad.mit.edu	37	X	21995186	21995186	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A194-01A-11D-A197-08	TCGA-ER-A194-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	01509a9b-70ab-41bc-8666-f49c04c7cdcd	930bbb8a-4bca-4a83-9d9d-6d47e585d500	g.chrX:21995186delC	uc004dag.2	+	5	438	c.337delC	c.(337-339)CCCfs	p.P113fs	SMS_uc011mjq.1_Frame_Shift_Del_p.P17fs|SMS_uc004daf.1_Frame_Shift_Del_p.P60fs|SMS_uc010nfs.2_5'Flank|SMS_uc010nft.2_5'Flank	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	113					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	CAGATTACCACCCATAGTGCG	0.473													10	18	---	---	---	---					
