Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC11	55735	broad.mit.edu	37	1	6698406	6698406	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:6698406C>T	uc001aof.2	-	12	1378	c.1272G>A	c.(1270-1272)AGG>AGA	p.R424R	DNAJC11_uc010nzt.1_Intron|DNAJC11_uc001aog.2_Silent_p.R372R|DNAJC11_uc010nzu.1_Silent_p.R334R	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	424	Potential.				protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCGCTTTCCCTCTGCTTCT	0.642000													8	22					0	0	0.000157383	0	0
PER3	8863	broad.mit.edu	37	1	7863183	7863183	+	Missense_Mutation	SNP	C	T	T	rs145870917		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:7863183C>T	uc001aoo.2	+	8	1121	c.946C>T	c.(946-948)CGT>TGT	p.R316C	PER3_uc009vmg.1_Missense_Mutation_p.R317C|PER3_uc009vmh.1_Missense_Mutation_p.R317C|PER3_uc001aop.2_Missense_Mutation_p.R317C|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.R316C	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	316	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGAAGATCGTTCTCTGAT	0.428000													29	71					0	0	0.00283554	0	0
PTCHD2	57540	broad.mit.edu	37	1	11595677	11595677	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:11595677G>A	uc001ash.3	+	20	3930	c.3792G>A	c.(3790-3792)GAG>GAA	p.E1264E		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1264	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TGGCTGGAGAGAACCTGCCCC	0.657000													8	30					0	0	0.000442599	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35900534	35900534	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:35900534G>A	uc001byx.2	-	21	3369	c.3111C>T	c.(3109-3111)ACC>ACT	p.T1037T	KIAA0319L_uc001byw.2_Silent_p.T479T	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	1037	Cytoplasmic (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCTTCAGAGGGGTCTGCCCGT	0.617000													6	24					0	0	0.000157383	0	0
GUCA2B	2981	broad.mit.edu	37	1	42620375	42620375	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:42620375G>A	uc001chc.1	+	2	145	c.115G>A	c.(115-117)GAA>AAA	p.E39K		NM_007102	NP_009033	Q16661	GUC2B_HUMAN	guanylate cyclase activator 2B precursor	39					excretion	extracellular region	calcium sensitive guanylate cyclase activator activity				0	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGTCCAGCTGGAATCCATGAA	0.642000													12	25					0	0	0.000422831	0	0
TIE1	7075	broad.mit.edu	37	1	43772651	43772651	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:43772651C>T	uc001ciu.2	+	4	704	c.625C>T	c.(625-627)CGG>TGG	p.R209W	TIE1_uc010okd.1_Missense_Mutation_p.R209W|TIE1_uc010oke.1_Missense_Mutation_p.R164W|TIE1_uc009vwq.2_Missense_Mutation_p.R209W|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'Flank|TIE1_uc010okb.1_Missense_Mutation_p.R209W|TIE1_uc010okc.1_Missense_Mutation_p.R209W	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	209	Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGCCTTCTTTCGGCTCATCGT	0.647000													9	34					0	0	0.000673444	0	0
DMBX1	127343	broad.mit.edu	37	1	46976687	46976687	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:46976687G>A	uc001cpx.2	+	3	444	c.429G>A	c.(427-429)GAG>GAA	p.E143E	DMBX1_uc001cpw.2_Silent_p.E138E	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	143	Interacts with OXT2 and is required for repressor activity (By similarity).				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGCAGAAGGAGGCTGAGGGCT	0.647000													6	30					0	0	0.00198382	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47564916	47564916	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:47564916G>A	uc001cqu.1	+	8	1030	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	343	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						ATGCCGAGATGAAATCAGGGA	0.438000													8	19					0	0	0.000157383	0	0
C8B	732	broad.mit.edu	37	1	57399146	57399146	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:57399146C>T	uc001cyp.2	-	10	1481	c.1414G>A	c.(1414-1416)GAA>AAA	p.E472K	C8B_uc010oon.1_Missense_Mutation_p.E410K|C8B_uc010ooo.1_Missense_Mutation_p.E420K	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	472	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GTCACTAGTTCATACAGAGGC	0.438000													7	21					0	0	0.000157383	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492592	74492592	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:74492592C>T	uc001dfy.3	-	8	1972	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	594	Potential.									ovary(2)	2						CAGGCTTTTTCAAAGGCAATC	0.289000													5	24					0	0	0.00116845	0	0
CLCA1	1179	broad.mit.edu	37	1	86959252	86959252	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:86959252G>A	uc001dlt.2	+	10	1779	c.1650G>A	c.(1648-1650)ATG>ATA	p.M550I	CLCA1_uc001dls.1_Missense_Mutation_p.M489I	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	550					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		ACACCAAAATGGCCTACCTCC	0.403000													14	33					0	0	0.000308642	0	0
ABCA4	24	broad.mit.edu	37	1	94505682	94505682	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:94505682C>T	uc001dqh.2	-	24	3628	c.3524G>A	c.(3523-3525)GGG>GAG	p.G1175E		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1175	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GCTGCAGGTCCCCTGCAACAG	0.552000											OREG0013610	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	11					0	0	0.000602214	0	0
PALMD	54873	broad.mit.edu	37	1	100154801	100154801	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:100154801C>T	uc001dsg.2	+	7	1428	c.985C>T	c.(985-987)CCC>TCC	p.P329S	PALMD_uc001dsf.2_Missense_Mutation_p.P329S	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	329					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		AGTGCCTCATCCCCGATCAGT	0.453000													9	17					0	0	0.000442599	0	0
SARS	6301	broad.mit.edu	37	1	109779138	109779138	+	Silent	SNP	C	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:109779138C>A	uc001dwu.1	+	9	1300	c.1225C>A	c.(1225-1227)CGA>AGA	p.R409R	SARS_uc001dwv.1_Silent_p.R409R|SARS_uc001dww.1_Silent_p.R342R|SARS_uc001dwx.1_Silent_p.R361R|SARS_uc009wfa.1_Intron|SARS_uc001dwy.1_Silent_p.R234R|SARS_uc001dwz.1_Silent_p.R234R	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	409					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	GCTTCGAATCCGATATGGGCA	0.557000													7	228					0.000274275	0.00123617	0.000274275	1	0
KCND3	3752	broad.mit.edu	37	1	112329604	112329604	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:112329604G>A	uc001ebu.1	-	3	1711	c.1231C>T	c.(1231-1233)CAC>TAC	p.H411Y	KCND3_uc001ebv.1_Missense_Mutation_p.H411Y	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	411	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		TGATTCTGGTGGTAAATCCGG	0.557000													15	45					0	0	0.000422831	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			31	74					5.60225e-13	2.54648e-12	0.00178596	1	0
HAO2	51179	broad.mit.edu	37	1	119925537	119925537	+	Splice_Site	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:119925537G>A	uc001ehq.1	+	4	484	c.132_splice	c.e4-1	p.R44_splice	HAO2_uc001ehr.1_Splice_Site_p.R44_splice	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2						fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GTCCGGCACAGAATTCGCCTC	0.542000													7	16					0	0	0.000978159	0	0
NBPF7	343505	broad.mit.edu	37	1	120378786	120378787	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:120378786_120378787CG>AT	uc010oxk.1	-	7	1580_1581	c.959_960CG>AT	c.(958-960)CCG>CAT	p.P320H		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	320	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CCCTTTCCTCCGGGGAGTCCTG	0.480000													6	273					0	0	6.4e-05	0	0
HRNR	388697	broad.mit.edu	37	1	152192185	152192185	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:152192185G>A	uc001ezt.1	-	3	1996	c.1920C>T	c.(1918-1920)GGC>GGT	p.G640G		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	640	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGAGCCAGAGCCATGCTGAC	0.572000													52	168					0	0	0.000781405	0	0
DENND4B	9909	broad.mit.edu	37	1	153912080	153912080	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:153912080G>A	uc001fdd.1	-	12	2205	c.1804C>T	c.(1804-1806)CTT>TTT	p.L602F		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	602	dDENN.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGAAGAAAAGGTTGTCAACA	0.612000													31	74					0	0	0.00283554	0	0
INSRR	3645	broad.mit.edu	37	1	156812890	156812890	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:156812890G>A	uc010pht.1	-	17	3286	c.3032C>T	c.(3031-3033)GCC>GTC	p.A1011V	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1011	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGTCTTCAGGGCCACGGGTGT	0.557000													15	24					0	0	0.000308642	0	0
FCRL5	83416	broad.mit.edu	37	1	157494225	157494225	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:157494225G>A	uc001fqu.2	-	10	2241	c.2083C>T	c.(2083-2085)CAT>TAT	p.H695Y	FCRL5_uc009wsm.2_Missense_Mutation_p.H695Y|FCRL5_uc010phv.1_Missense_Mutation_p.H695Y|FCRL5_uc010phw.1_Missense_Mutation_p.H610Y	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	695	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACATCTTCATGATAAAACCAG	0.572000													11	31					0	0	0.00136819	0	0
FCRL3	115352	broad.mit.edu	37	1	157659629	157659629	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:157659629G>A	uc001frb.2	-	10	2061	c.1769C>T	c.(1768-1770)GCT>GTT	p.A590V	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.A590V|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.A316V|FCRL3_uc001frc.1_Missense_Mutation_p.A590V	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	590	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CAGAGCAGCAGCAGCAGCAAG	0.542000													4	23					0	0	0.00024832	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022551	161022551	+	Missense_Mutation	SNP	C	T	T	rs140780168		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:161022551C>T	uc001fxl.2	-	7	1047	c.701G>A	c.(700-702)GGG>GAG	p.G234E	ARHGAP30_uc001fxk.2_Missense_Mutation_p.G234E|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G80E|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Missense_Mutation_p.G80E	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	234					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			TGCCCGGGTCCCTGGAAGCGA	0.617000													7	25					0	0	0.000442599	0	0
SELE	6401	broad.mit.edu	37	1	169698456	169698456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:169698456G>A	uc001ggm.3	-	7	1118	c.961C>T	c.(961-963)CCT>TCT	p.P321S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	321	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCTCCAGCAGGGGAATGGCTG	0.527000													8	17					0	0	0.000157383	0	0
HMCN1	83872	broad.mit.edu	37	1	186072783	186072783	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:186072783C>T	uc001grq.1	+	69	10982	c.10753C>T	c.(10753-10755)CGA>TGA	p.R3585*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3585	Ig-like C2-type 34.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGAGGTTCTTCGAATTTCTAC	0.418000													15	30					0	0	0.00121646	0	0
KCNT2	343450	broad.mit.edu	37	1	196197368	196197368	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:196197368C>T	uc001gtd.1	-	28	3454	c.3394G>A	c.(3394-3396)GAA>AAA	p.E1132K	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.E1065K|KCNT2_uc001gtf.1_Missense_Mutation_p.E1108K|KCNT2_uc001gtg.1_RNA	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1132	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AGTTGAGTTTCCTCCCGAGAA	0.403000													13	23					0	0	0.00185496	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202910757	202910757	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:202910757G>A	uc001gyq.3	-	8	1339	c.1072C>T	c.(1072-1074)CTT>TTT	p.L358F	ADIPOR1_uc010pqd.1_Missense_Mutation_p.L282F|ADIPOR1_uc001gyr.3_Missense_Mutation_p.L157F|ADIPOR1_uc001gys.3_Missense_Mutation_p.L358F	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	358	Extracellular (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			AATTCCTGAAGGTTGGAGACT	0.507000													12	45					0	0	0.00185496	0	0
KCNH1	3756	broad.mit.edu	37	1	210857348	210857348	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:210857348C>T	uc001hib.2	-	11	2415	c.2245G>A	c.(2245-2247)GAG>AAG	p.E749K	KCNH1_uc001hic.2_Missense_Mutation_p.E722K	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	749	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AGCCTGGCCTCTTTCTGCTGT	0.597000													9	25					0	0	0.000442599	0	0
MOSC2	54996	broad.mit.edu	37	1	220953378	220953378	+	Silent	SNP	C	T	T	rs140582959	by1000genomes	TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:220953378C>T	uc001hmq.2	+	5	967	c.769C>T	c.(769-771)CTA>TTA	p.L257L	MOSC2_uc001hmr.2_Silent_p.L257L|MOSC2_uc009xdx.2_Intron	NM_017898	NP_060368	Q969Z3	MOSC2_HUMAN	MOCO sulphurase C-terminal domain containing 2	257	MOSC.					mitochondrial outer membrane|peroxisome	molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.00499)|all cancers(67;0.204)		GGATGAACTCCTAATTGGTAG	0.423000													14	29					0	0	0.000308642	0	0
KIAA1383	54627	broad.mit.edu	37	1	232943495	232943495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:232943495C>T	uc001hvh.2	+	1	2858	c.2726C>T	c.(2725-2727)TCA>TTA	p.S909L		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	767	Ser-rich.									ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				CCACCTTTTTCAGCCGGGTCA	0.378000													10	21					0	0	0.000442599	0	0
KCNK1	3775	broad.mit.edu	37	1	233807084	233807084	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:233807084G>A	uc010pxo.1	+	3	987	c.819G>A	c.(817-819)CTG>CTA	p.L273L	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	273	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCCATGAGCTGAAAAAATTCA	0.448000													16	20					0	0	0.000566183	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367384	234367384	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:234367384C>T	uc001hwa.1	+	2	526	c.298C>T	c.(298-300)CTC>TTC	p.L100F	SLC35F3_uc001hvy.1_Missense_Mutation_p.L169F	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	100	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GCCCTTCACCCTCACGTGGTT	0.592000													22	79					0	0	0.00188189	0	0
NID1	4811	broad.mit.edu	37	1	236187432	236187432	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:236187432G>A	uc001hxo.2	-	9	2168	c.2066C>T	c.(2065-2067)CCC>CTC	p.P689L	NID1_uc009xgd.2_Missense_Mutation_p.P689L	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	689	EGF-like 2.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CTGTGTCCTGGGACCAGGGCG	0.567000													12	18					0	0	0.000978159	0	0
OR14A16	284532	broad.mit.edu	37	1	247978766	247978766	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:247978766G>A	uc001idm.1	-	1	266	c.266C>T	c.(265-267)TCC>TTC	p.S89F		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAATGAAATGGAGTTGTTGTG	0.443000													9	18					0	0	0.000274275	0	0
OR2L8	391190	broad.mit.edu	37	1	248112820	248112820	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr1:248112820C>T	uc001idt.1	+	1	661	c.661C>T	c.(661-663)CTC>TTC	p.L221F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGGCCAGGTTCTCTTTGCTGT	0.468000													10	62					0	0	0.00244969	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203688	5203688	+	RNA	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:5203688A>G	uc009xhz.2	-	4		c.504T>C				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						AGTTTTGGCAATCCTATGCAC	0.413000													16	38					0	0	0.000566183	0	0
NEBL	10529	broad.mit.edu	37	10	21074831	21074831	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:21074831C>T	uc001iqi.2	-	28	3287	c.2890G>A	c.(2890-2892)GAT>AAT	p.D964N	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.D220N	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	964	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCACTGTAATCGTACATGGCT	0.502000													21	47					0	0	0.000878237	0	0
NRP1	8829	broad.mit.edu	37	10	33542975	33542975	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:33542975G>A	uc001iwx.3	-	6	1485	c.962C>T	c.(961-963)TCC>TTC	p.S321F	NRP1_uc001iwv.3_Missense_Mutation_p.S321F|NRP1_uc009xlz.2_Missense_Mutation_p.S321F|NRP1_uc001iww.3_Missense_Mutation_p.S140F|NRP1_uc001iwy.3_Missense_Mutation_p.S321F|NRP1_uc001iwz.2_Missense_Mutation_p.S321F|NRP1_uc001ixa.2_Missense_Mutation_p.S321F|NRP1_uc001ixb.1_Missense_Mutation_p.S321F|NRP1_uc001ixc.1_Missense_Mutation_p.S321F	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	321	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CTCTCGGTAGGAATCCTCTCC	0.483000													9	27					0	0	0.000442599	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508414	37508414	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:37508414G>A	uc001iza.1	+	34	3705	c.3606G>A	c.(3604-3606)AGG>AGA	p.R1202R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1258						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGCTCAAAGGAAATCCAAAA	0.368000													9	19					0	0	0.000442599	0	0
ZNF485	220992	broad.mit.edu	37	10	44111840	44111840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:44111840G>A	uc010qfc.1	+	5	543	c.349G>A	c.(349-351)GGC>AGC	p.G117S	ZNF485_uc010qfd.1_Missense_Mutation_p.G26S	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATGGAAAAAGGCCTGGACTG	0.453000													8	20					0	0	0.000157383	0	0
PCDH15	65217	broad.mit.edu	37	10	55581682	55581682	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:55581682C>T	uc001jju.1	-	33	6199	c.5804G>A	c.(5803-5805)GGG>GAG	p.G1935E	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Missense_Mutation_p.G789E|PCDH15_uc010qhv.1_Missense_Mutation_p.G1932E|PCDH15_uc010qhw.1_Missense_Mutation_p.G1895E|PCDH15_uc010qhx.1_Missense_Mutation_p.G1866E|PCDH15_uc010qhy.1_Missense_Mutation_p.G1942E|PCDH15_uc010qhz.1_Missense_Mutation_p.G1937E|PCDH15_uc010qia.1_Missense_Mutation_p.G1915E|PCDH15_uc010qib.1_Missense_Mutation_p.G1912E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1935	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTTCAAACTCCCCTTGTTTTG	0.353000										HNSCC(58;0.16)			14	49					0	0	0.00185496	0	0
SLC16A9	220963	broad.mit.edu	37	10	61443922	61443922	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:61443922G>A	uc010qig.1	-	2	577	c.128C>T	c.(127-129)GCC>GTC	p.A43V		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	43	Cytoplasmic (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TTCACCAAAGGCATCCAGCCA	0.473000													32	72					0	0	0.00128727	0	0
ANK3	288	broad.mit.edu	37	10	61831464	61831464	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:61831464C>T	uc001jky.2	-	37	9367	c.9175G>A	c.(9175-9177)GAA>AAA	p.E3059K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3059					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGGGAGATTCCTTTCCTGGG	0.463000													23	54					0	0	0.00188189	0	0
ANK3	288	broad.mit.edu	37	10	61955924	61955924	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:61955924G>A	uc001jky.2	-	16	2058	c.1866C>T	c.(1864-1866)GCC>GCT	p.A622A	ANK3_uc010qih.1_Silent_p.A605A|ANK3_uc001jkz.3_Silent_p.A616A|ANK3_uc001jlb.1_Silent_p.A151A|ANK3_uc001jlc.1_Silent_p.A283A	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	622	ANK 17.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGTGAGGTGAGGCTCCTTGGT	0.488000													3	25					0	0	6.4e-05	0	0
COL13A1	1305	broad.mit.edu	37	10	71690276	71690276	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:71690276G>A	uc001jpr.1	+	28	2154	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K	COL13A1_uc001jqj.1_Missense_Mutation_p.E540K|COL13A1_uc001jps.1_Missense_Mutation_p.E511K|COL13A1_uc001jpt.1_Missense_Mutation_p.E499K|COL13A1_uc001jpu.1_Missense_Mutation_p.E521K|COL13A1_uc001jpv.1_Missense_Mutation_p.E540K|COL13A1_uc001jpx.1_Missense_Mutation_p.E518K|COL13A1_uc001jpw.1_Missense_Mutation_p.E487K|COL13A1_uc001jpy.1_Missense_Mutation_p.E478K|COL13A1_uc001jpz.1_Missense_Mutation_p.E483K|COL13A1_uc001jqa.1_Missense_Mutation_p.E480K|COL13A1_uc001jqc.1_Missense_Mutation_p.E540K|COL13A1_uc001jqb.1_Missense_Mutation_p.E489K|COL13A1_uc001jql.2_Missense_Mutation_p.E540K|COL13A1_uc001jqd.1_Missense_Mutation_p.E528K|COL13A1_uc001jqe.1_Missense_Mutation_p.E523K|COL13A1_uc001jqf.1_Missense_Mutation_p.E521K|COL13A1_uc001jqg.1_Missense_Mutation_p.E518K|COL13A1_uc001jqh.1_Missense_Mutation_p.E540K|COL13A1_uc001jqi.1_Missense_Mutation_p.E540K|COL13A1_uc010qjf.1_Missense_Mutation_p.E330K	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	540	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AGAGAAGGGGGAAAAAGGGGA	0.632000													5	12					0	0	0.000602214	0	0
C10orf54	64115	broad.mit.edu	37	10	73521673	73521673	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:73521673C>T	uc001jsd.2	-	2	334	c.193G>A	c.(193-195)GAT>AAT	p.D65N	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_5'UTR|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Missense_Mutation_p.D65N	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	65	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AAGGTCACATCGTGCCCTTTG	0.622000													10	33					0	0	0.000978159	0	0
NRG3	10718	broad.mit.edu	37	10	84718705	84718705	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:84718705G>A	uc001kco.2	+	6	1185	c.1158G>A	c.(1156-1158)AAG>AAA	p.K386K	NRG3_uc010qlz.1_Silent_p.K385K|NRG3_uc001kcp.2_Silent_p.K165K|NRG3_uc001kcq.2_Silent_p.K36K|NRG3_uc001kcr.2_Silent_p.K36K	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	386	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		ATGCCTGCAGGAAACAAGCTA	0.388000													9	26					0	0	0.000442599	0	0
FAM22A	728118	broad.mit.edu	37	10	88988226	88988226	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:88988226G>A	uc001kek.2	+	2	972	c.589G>A	c.(589-591)GGG>AGG	p.G197R	LOC728190_uc009xtc.2_Intron|LOC728190_uc009xtd.2_Intron	NM_001099338	NP_001092808	Q8IVF1	FA22A_HUMAN	hypothetical protein LOC728118	197											0						CGGCCCGAGTGGGGCCGGGGC	0.657000													9	28					0	0	0.000442599	0	0
IDE	3416	broad.mit.edu	37	10	94223525	94223526	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:94223525_94223526CC>AA	uc001kia.2	-	21	2799_2800	c.2723_2724GG>TT	c.(2722-2724)TGG>TTT	p.W908F	IDE_uc010qnp.1_Missense_Mutation_p.W353F|IDE_uc001khz.2_Missense_Mutation_p.W353F	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	908					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGATTTCTCCCCAGTATTTAGC	0.401000													11	456					0	0	6.4e-05	0	0
PKD2L1	9033	broad.mit.edu	37	10	102054388	102054388	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:102054388G>A	uc001kqx.1	-	9	1946	c.1563C>T	c.(1561-1563)CTC>CTT	p.L521L	PKD2L1_uc009xwm.1_Silent_p.L474L	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	521	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CAAAGTCCCCGAGGATTATCC	0.517000													24	45					0	0	0.000720815	0	0
C10orf79	80217	broad.mit.edu	37	10	105953668	105953668	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:105953668G>A	uc001kxw.2	-	11	1514	c.1398C>T	c.(1396-1398)GTC>GTT	p.V466V	C10orf79_uc001kxx.3_Silent_p.V467V|C10orf79_uc001kxy.1_Silent_p.V467V	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	466	WD 7.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CCTTGTGCACGACCTGAGGGG	0.567000													10	43					0	0	0.000442599	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118228729	118228729	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:118228729C>G	uc001lcl.3	+	9	1061	c.960C>G	c.(958-960)TGC>TGG	p.C320W		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	320					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		AAGAAGGTTGCCCAACAATGG	0.353000													9	24					0	0	0.000442599	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118228749	118228749	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:118228749C>G	uc001lcl.3	+	9	1081	c.980C>G	c.(979-981)GCT>GGT	p.A327G		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	327					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		GGTCATTTTGCTGATAGATTT	0.348000													11	22					0	0	0.000978159	0	0
C10orf120	399814	broad.mit.edu	37	10	124457593	124457593	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:124457593C>T	uc001lgn.2	-	3	696	c.664G>A	c.(664-666)GAT>AAT	p.D222N		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	222										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TGGTTGGCATCATCACAATTA	0.403000													9	17					0	0	0.000274275	0	0
SYCE1	93426	broad.mit.edu	37	10	135369309	135369309	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:135369309G>A	uc001lno.2	-	10	799	c.694C>T	c.(694-696)CGC>TGC	p.R232C	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.R104C|SYCE1_uc009ybn.2_Missense_Mutation_p.R232C|SYCE1_uc001lnn.2_Missense_Mutation_p.R196C	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	232	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCCTGGCTGCGGAGAAAGAGT	0.637000													7	17					0	0	0.00198382	0	0
FRG2B	441581	broad.mit.edu	37	10	135440165	135440165	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr10:135440165A>G	uc010qvg.1	-	1	135	c.82T>C	c.(82-84)TCC>CCC	p.S28P		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	28						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCTGTAAAGGAGATCTGTTGG	0.483000													4	96					0	0	0.00024832	0	0
MUC5B	727897	broad.mit.edu	37	11	1270670	1270670	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:1270670T>C	uc009ycr.1	+	51	14105	c.13979T>C	c.(13978-13980)TTG>TCG	p.L4660S	MUC5B_uc001ltb.2_Missense_Mutation_p.L4190S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4187	7 X Cys-rich subdomain repeats.|Thr-rich.|Cys-rich subdomain 7.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTGGGGGAGTTGGGCCAGGTC	0.637000													19	60					0	0	0.00121646	0	0
PDE3B	5140	broad.mit.edu	37	11	14808177	14808177	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:14808177C>T	uc001mln.2	+	3	1577	c.1224C>T	c.(1222-1224)TAC>TAT	p.Y408Y	PDE3B_uc010rcr.1_Intron	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	408					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						CTGGATTTTACCCCTGTTCTG	0.388000													37	80					0	0	0.00222228	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159526	18159526	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:18159526C>T	uc001mnu.2	+	3	1138	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	259	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTTCCATTTTCCTGTCCGCTC	0.493000													15	42					0	0	0.00244969	0	0
LDHA	3939	broad.mit.edu	37	11	18428703	18428703	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:18428703C>T	uc001mok.3	+	8	1146	c.874C>T	c.(874-876)CCT>TCT	p.P292S	LDHA_uc010rdc.1_Missense_Mutation_p.P234S|LDHA_uc009yhn.2_Missense_Mutation_p.P291S|LDHA_uc009yho.2_Missense_Mutation_p.P119S|LDHA_uc001mol.3_3'UTR|LDHA_uc010rdd.1_Missense_Mutation_p.P321S	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	292					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	CCTTAGTGTTCCTTGCATTTT	0.418000													6	34					0	0	0.00198382	0	0
BDNF	627	broad.mit.edu	37	11	27679989	27679989	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:27679989C>T	uc010rdu.1	-	2	974	c.123G>A	c.(121-123)GGG>GGA	p.G41G	BDNFOS_uc001mrm.2_RNA|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_RNA|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_RNA|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_RNA|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_RNA|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_RNA|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_RNA|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_RNA|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_RNA|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_RNA|BDNFOS_uc001mrr.3_RNA|BDNFOS_uc009yja.2_RNA|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Silent_p.G41G|BDNF_uc001mrt.2_Silent_p.G56G|BDNF_uc010rdw.1_Silent_p.G41G|BDNF_uc009yjd.2_Silent_p.G41G|BDNF_uc001mru.2_Silent_p.G41G|BDNF_uc010rdx.1_Silent_p.G41G|BDNF_uc010rdy.1_Silent_p.G41G|BDNF_uc009yjg.2_Silent_p.G41G|BDNF_uc009yje.2_Silent_p.G123G|BDNF_uc009yjf.2_Silent_p.G70G|BDNF_uc001mrv.2_Silent_p.G41G|BDNF_uc001mrw.3_Silent_p.G41G|BDNF_uc001mrx.2_Silent_p.G41G|BDNF_uc001mry.3_Silent_p.G41G|BDNF_uc001mrz.3_Silent_p.G41G|BDNF_uc001msa.2_Silent_p.G49G	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	41						extracellular region	growth factor activity				0						TCTCCAGAGTCCCATGGGTCC	0.527000													25	59					0	0	0.00127121	0	0
C11orf41	25758	broad.mit.edu	37	11	33566325	33566325	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:33566325C>T	uc001mup.3	+	2	2037	c.1913C>T	c.(1912-1914)TCA>TTA	p.S638L	C11orf41_uc001mun.1_Missense_Mutation_p.S638L	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	632						integral to membrane				ovary(2)	2						GACACAGTATCATCTAAGGTA	0.463000													9	15					0	0	0.000274275	0	0
LMO2	4005	broad.mit.edu	37	11	33881008	33881008	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:33881008G>A	uc001mve.2	-	3	810	c.371C>T	c.(370-372)GCC>GTC	p.A124V	LMO2_uc001mvc.2_Missense_Mutation_p.A117V|LMO2_uc001mvd.2_Missense_Mutation_p.A117V|LMO2_uc010rel.1_Missense_Mutation_p.A124V|LMO2_uc010rem.1_Missense_Mutation_p.A193V	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	124	LIM zinc-binding 2.				multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						CTTCTGACAGGCGGCGCATTT	0.488000			T	TRD@	T-ALL								12	25					0	0	0.00185496	0	0
OR4S2	219431	broad.mit.edu	37	11	55419023	55419023	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55419023C>T	uc001nhs.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TTGCTAATCTCCTACAGCATC	0.483000													25	76					0	0	0.00047179	0	0
OR5D14	219436	broad.mit.edu	37	11	55563919	55563919	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55563919T>G	uc010rim.1	+	1	888	c.888T>G	c.(886-888)AAT>AAG	p.N296K		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				GCCTAAGGAATAAAGACGTGA	0.408000													12	22					0	0	0.000422831	0	0
OR5W2	390148	broad.mit.edu	37	11	55681877	55681877	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55681877A>T	uc010rir.1	-	1	182	c.182T>A	c.(181-183)TTC>TAC	p.F61Y		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACTGAGGAAGAAATACATTGG	0.383000													11	29					0	0	0.000673444	0	0
OR5F1	338674	broad.mit.edu	37	11	55761808	55761808	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55761808G>A	uc010riv.1	-	1	294	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ACATCTGTAGGAAGCAGCCAG	0.468000													15	46					0	0	0.000422831	0	0
OR5F1	338674	broad.mit.edu	37	11	55761975	55761975	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55761975G>A	uc010riv.1	-	1	127	c.127C>T	c.(127-129)CTC>TTC	p.L43F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ATCATCCCGAGATTTCCCAGT	0.428000													9	25					0	0	0.000274275	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798785	55798785	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:55798785G>A	uc010riw.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ACAAGGATGTGAAAAATGCTC	0.313000													14	47					0	0	0.00185496	0	0
OR6Q1	219952	broad.mit.edu	37	11	57798591	57798591	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:57798591G>A	uc010rjz.1	+	1	167	c.167G>A	c.(166-168)CGA>CAA	p.R56Q	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				TTGGACCACCGACTACGGAGA	0.478000													31	97					0	0	0.00058488	0	0
ZFP91	80829	broad.mit.edu	37	11	58379782	58379782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:58379782C>T	uc001nmx.3	+	7	1057	c.889C>T	c.(889-891)CCA>TCA	p.P297S	ZFP91_uc001nmy.3_Missense_Mutation_p.P296S|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	297					activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				TGACAAAAGTCCACGTTTACC	0.393000													9	11					0	0	0.000978159	0	0
CAPN1	823	broad.mit.edu	37	11	64951035	64951035	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:64951035A>T	uc009yqd.1	+	4	539	c.428A>T	c.(427-429)AAT>ATT	p.N143I	uc001ode.2_5'Flank|CAPN1_uc001odf.1_Missense_Mutation_p.N143I|CAPN1_uc001odg.1_Missense_Mutation_p.N143I|CAPN1_uc010roa.1_5'UTR	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	143	Calpain catalytic.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)		AGCTTCCAGAATGGCTATGCC	0.647000													5	15					0	0	0.000602214	0	0
MUS81	80198	broad.mit.edu	37	11	65631970	65631970	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:65631970C>T	uc001ofv.3	+	11	1415	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	MUS81_uc001ofw.3_RNA|MUS81_uc001ofx.3_5'UTR	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	354	ERCC4.				DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		TTCCCTAGTTCCGGCTGAAGC	0.587000								Homologous_recombination					7	21					0	0	0.000442599	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793311	65793311	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:65793311G>A	uc001ogt.2	-	1	678	c.540C>T	c.(538-540)CTC>CTT	p.L180L		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	180	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						GTCCATGGGGGAGGTAGGACC	0.592000													8	34					0	0	0.000274275	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433012	67433012	+	Silent	SNP	G	A	A	rs142189245	byFrequency	TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:67433012G>A	uc001omr.2	-	7	889	c.450C>T	c.(448-450)CGC>CGT	p.R150R	ALDH3B2_uc001oms.2_Silent_p.R150R|ALDH3B2_uc009ysa.1_Silent_p.R150R	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	150					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase	p.R150C(1)		lung(1)|kidney(1)	2					NADH(DB00157)	ACCAGGCCACGCGGTTGGCCA	0.672000													32	75					0	0	0.000814825	0	0
NOX4	50507	broad.mit.edu	37	11	89182645	89182645	+	Silent	SNP	G	A	A	rs34078833		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:89182645G>A	uc001pct.2	-	4	551	c.312C>T	c.(310-312)TTC>TTT	p.F104F	NOX4_uc009yvr.2_Silent_p.F79F|NOX4_uc001pcu.2_Silent_p.F30F|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Silent_p.F104F|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Intron|NOX4_uc009yvp.2_Silent_p.F104F|NOX4_uc010rtv.1_Silent_p.F80F|NOX4_uc009yvq.2_Silent_p.F80F|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	104	Helical; (Potential).|Ferric oxidoreductase.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGGTAATATGGAATGTTCTGC	0.189000													10	32					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	11	89768518	89768518	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:89768518C>T	uc010rua.1	+	2	262	c.139C>T	c.(139-141)CCA>TCA	p.P47S		NM_020358	NP_065091			ring finger protein 18																		GCAAGACATCCCATTTCTTGT	0.463000													7	17					0	0	0.000566183	0	0
HEPHL1	341208	broad.mit.edu	37	11	93819248	93819248	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:93819248G>A	uc001pep.2	+	11	2130	c.1973G>A	c.(1972-1974)GGA>GAA	p.G658E	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	658	Plastocyanin-like 4.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GACATGCATGGAATTGTTTTT	0.507000													10	23					0	0	0.000673444	0	0
JRKL	8690	broad.mit.edu	37	11	96124980	96124980	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:96124980C>T	uc009ywu.2	+	2	1419	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L	CCDC82_uc001pfx.3_5'Flank|CCDC82_uc009ywr.2_5'Flank|CCDC82_uc009ywt.1_5'Flank|JRKL_uc001pfy.2_Silent_p.L389L	NM_003772	NP_003763	Q9Y4A0	JERKL_HUMAN	jerky homolog-like	389					central nervous system development|regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)		BRCA - Breast invasive adenocarcinoma(274;0.148)		AGAAGATTCTCCCTATGGTAG	0.413000													21	47					0	0	0.00278032	0	0
MFRP	83552	broad.mit.edu	37	11	119215092	119215092	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:119215092C>T	uc001pwj.2	-	8	1068	c.908G>A	c.(907-909)GGG>GAG	p.G303E	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Intron	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		AGTCAGATTCCCCCCACACCC	0.572000													4	12					0	0	0.000602214	0	0
SORL1	6653	broad.mit.edu	37	11	121429346	121429346	+	Missense_Mutation	SNP	C	T	T	rs148966249		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:121429346C>T	uc001pxx.2	+	20	2790	c.2710C>T	c.(2710-2712)CGG>TGG	p.R904W		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	904	Extracellular (Potential).|LDL-receptor class B 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TGGGATTTATCGGAGCAATAT	0.507000													34	82					0	0	0.000953801	0	0
SCN3B	55800	broad.mit.edu	37	11	123509025	123509025	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr11:123509025C>T	uc001pza.1	-	5	860	c.453G>A	c.(451-453)GAG>GAA	p.E151E	SCN3B_uc001pzb.1_Silent_p.E151E	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	151	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		AGGTGAAGTCCTCTCCAGCTG	0.418000													11	21					0	0	0.000978159	0	0
CD163L1	283316	broad.mit.edu	37	12	7585969	7585969	+	Splice_Site	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:7585969C>T	uc001qsy.2	-	3	471	c.445_splice	c.e3+1	p.G149_splice	CD163L1_uc010sge.1_Missense_Mutation_p.G149D	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1							extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TAGACTCTTACCATAACAGTT	0.443000													10	25					0	0	0.000978159	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854502	18854502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:18854502C>T	uc010sid.1	-	9	1141	c.950G>A	c.(949-951)GGA>GAA	p.G317E	PLCZ1_uc001rdv.3_Missense_Mutation_p.G213E|PLCZ1_uc001rdw.3_Missense_Mutation_p.G58E|PLCZ1_uc001rdu.1_Missense_Mutation_p.G99E|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	317					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TTGATTGTCTCCTAAAACAGA	0.279000													15	31					0	0	0.000422831	0	0
SLC4A8	9498	broad.mit.edu	37	12	51888848	51888848	+	Silent	SNP	C	T	T	rs141954048		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:51888848C>T	uc001rys.1	+	21	3067	c.2889C>T	c.(2887-2889)CTC>CTT	p.L963L	SLC4A8_uc001rym.2_Silent_p.L910L|SLC4A8_uc001ryn.2_Silent_p.L910L|SLC4A8_uc001ryo.2_Silent_p.L910L|SLC4A8_uc010snj.1_Silent_p.L990L|SLC4A8_uc001ryr.2_Silent_p.L963L	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	963	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TGACCTGTCTCGTCCTGCTCT	0.468000													12	49					0	0	0.00244969	0	0
KRT76	51350	broad.mit.edu	37	12	53169229	53169229	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:53169229C>T	uc001sax.2	-	2	812	c.758G>A	c.(757-759)GGG>GAG	p.G253E		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	253	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						CTCCAGGTTCCCCCTCTCCCC	0.542000													27	74					0	0	0.001512	0	0
KRT78	196374	broad.mit.edu	37	12	53238453	53238453	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:53238453C>T	uc001sbc.1	-	5	875	c.811G>A	c.(811-813)GAC>AAC	p.D271N		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	271	Linker 12.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CGGTTGTTGTCCATGGACAGC	0.622000													5	19					0	0	0.000602214	0	0
KRT8	3856	broad.mit.edu	37	12	53295761	53295761	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:53295761G>A	uc001sbd.2	-	2	523	c.420C>T	c.(418-420)TTC>TTT	p.F140F	KRT8_uc009zmj.2_Silent_p.F140F|KRT8_uc009zmk.1_Silent_p.F168F|KRT8_uc009zml.1_Silent_p.F140F|KRT8_uc009zmm.1_Silent_p.F140F	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	140	Linker 1.|Rod.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTAGCTCTCGAACATGTTGT	0.572000													12	26					0	0	0.000978159	0	0
SOAT2	8435	broad.mit.edu	37	12	53499791	53499791	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:53499791G>A	uc001sbv.2	+	5	524	c.436G>A	c.(436-438)GAG>AAG	p.E146K	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	146					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						CTTCATTGATGAGGGCAGGTA	0.577000													10	18					0	0	0.000673444	0	0
AAAS	8086	broad.mit.edu	37	12	53709124	53709124	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:53709124G>A	uc001scr.3	-	4	557	c.394C>T	c.(394-396)CTG>TTG	p.L132L	AAAS_uc001scs.3_Silent_p.L132L	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	132					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						CTTACAGACAGATGGGGGAAC	0.582000													5	17					0	0	0.000602214	0	0
INHBE	83729	broad.mit.edu	37	12	57849480	57849480	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:57849480G>A	uc001snw.2	+	1	385	c.161G>A	c.(160-162)GGG>GAG	p.G54E		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	54					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						ATCCTGGATGGGTTGCACCTG	0.622000													4	13					0	0	0.00024832	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373303	86373303	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:86373303G>A	uc001tai.3	-	8	2451	c.1201C>T	c.(1201-1203)CGG>TGG	p.R401W	MGAT4C_uc001tal.3_Missense_Mutation_p.R401W|MGAT4C_uc001taj.3_Missense_Mutation_p.R401W|MGAT4C_uc001tak.3_Missense_Mutation_p.R401W|MGAT4C_uc010sum.1_Missense_Mutation_p.R425W|MGAT4C_uc001tah.3_Missense_Mutation_p.R401W	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	401	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TCATTTTGCCGATCTTCTGTT	0.348000													6	26					0	0	0.000157383	0	0
ANKS1B	56899	broad.mit.edu	37	12	99640355	99640355	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:99640355C>T	uc001tge.1	-	13	2461	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	ANKS1B_uc001tgf.1_Missense_Mutation_p.E262K|ANKS1B_uc001tgk.2_5'UTR|ANKS1B_uc009ztt.1_Missense_Mutation_p.E648K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	682						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GTATGGTTTTCGAGTTGGTTG	0.428000													4	12					0	0	0.000602214	0	0
ANO4	121601	broad.mit.edu	37	12	101333113	101333113	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:101333113C>T	uc010svm.1	+	4	753	c.181C>T	c.(181-183)CTT>TTT	p.L61F	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.L26F|ANO4_uc001thx.2_Missense_Mutation_p.L61F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	61	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTCAATATTCTTTTTGATGA	0.393000										HNSCC(74;0.22)			21	47					0	0	0.000586117	0	0
TDG	6996	broad.mit.edu	37	12	104378645	104378645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:104378645G>A	uc001tkg.2	+	8	1134	c.911G>A	c.(910-912)CGA>CAA	p.R304Q	TDG_uc009zuk.2_Missense_Mutation_p.R300Q|TDG_uc010swi.1_Missense_Mutation_p.R161Q|TDG_uc010swj.1_Missense_Mutation_p.R92Q	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	304					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		GGCATTGAACGAAATATGGAC	0.388000								BER_DNA_glycosylases					5	54					0	0	0.00116845	0	0
NOS1	4842	broad.mit.edu	37	12	117768765	117768765	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:117768765C>T	uc001twm.1	-	2	796	c.110G>A	c.(109-111)AGT>AAT	p.S37N		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	37	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGGCGGCTTACTGACCCGCTC	0.577000													8	30					0	0	0.000673444	0	0
KSR2	283455	broad.mit.edu	37	12	117962701	117962701	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:117962701G>A	uc001two.2	-	14	2143	c.2088C>T	c.(2086-2088)TTC>TTT	p.F696F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	725	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGCACCCATGAAAAGCACCA	0.527000													6	20					0	0	0.00116845	0	0
GCN1L1	10985	broad.mit.edu	37	12	120585041	120585041	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:120585041G>A	uc001txo.2	-	38	4775	c.4762C>T	c.(4762-4764)CCC>TCC	p.P1588S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1588	HEAT 10.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCCTGGAGGGATCCGTCAGG	0.562000													5	14					0	0	0.000602214	0	0
C12orf43	64897	broad.mit.edu	37	12	121442062	121442063	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:121442062_121442063CC>AA	uc001tzh.1	-	6	705_706	c.682_683GG>TT	c.(682-684)GGG>TTG	p.G228L	C12orf43_uc009zxa.1_Missense_Mutation_p.G259L|C12orf43_uc010szo.1_Missense_Mutation_p.G187L|C12orf43_uc010szp.1_Missense_Mutation_p.G218L|C12orf43_uc001tzi.1_Missense_Mutation_p.G229L	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	228	Lys-rich.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACCTGGTCCCCGTTGAGCTCA	0.559000													15	590					0	0	6.4e-05	0	0
CAMKK2	10645	broad.mit.edu	37	12	121712086	121712086	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:121712086G>A	uc001tzu.2	-	2	368	c.244C>T	c.(244-246)CCC>TCC	p.P82S	CAMKK2_uc001tzt.2_Missense_Mutation_p.P82S|CAMKK2_uc001tzv.2_Missense_Mutation_p.P82S|CAMKK2_uc001tzw.2_Missense_Mutation_p.P82S|CAMKK2_uc001tzx.2_Missense_Mutation_p.P82S|CAMKK2_uc001tzy.2_Missense_Mutation_p.P82S|CAMKK2_uc001uaa.1_Missense_Mutation_p.P82S|CAMKK2_uc001uab.2_Missense_Mutation_p.P82S|CAMKK2_uc001uac.2_Missense_Mutation_p.P82S|CAMKK2_uc001uad.1_Missense_Mutation_p.P82S	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	82					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GTGTCAAGGGGGACCTCTTGG	0.697000													51	124					0	0	0.000781405	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123645789	123645789	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:123645789G>A	uc001uel.2	-	18	2926	c.2819C>T	c.(2818-2820)CCG>CTG	p.P940L	MPHOSPH9_uc010tal.1_Missense_Mutation_p.P394L|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Missense_Mutation_p.P394L	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	940					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		GACTGAAACCGGCTTACACTG	0.418000													12	44					0	0	0.000978159	0	0
SETD8	387893	broad.mit.edu	37	12	123892065	123892065	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:123892065C>T	uc001uew.2	+	8	916	c.874C>T	c.(874-876)CGC>TGC	p.R292C	SETD8_uc001uex.2_Missense_Mutation_p.R227C	NM_020382	NP_065115	Q9NQR1	SETD8_HUMAN	SET domain-containing 8	333	SET.				cell division|mitosis|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding|transcription corepressor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.00101)|Epithelial(86;0.00425)		AGAGACAAATCGCCTAGGAAG	0.512000													13	25					0	0	0.00185496	0	0
SFRS8	6433	broad.mit.edu	37	12	132237735	132237736	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr12:132237735_132237736CC>TT	uc001uja.1	+	8	1289_1290	c.1149_1150CC>TT	c.(1147-1152)CCCCCT>CCTTCT	p.P384S	SFRS8_uc010tbn.1_Missense_Mutation_p.P384S|SFRS8_uc001ujb.1_Missense_Mutation_p.P177S|SFRS8_uc001uiz.1_Missense_Mutation_p.P258S	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	384	Poly-Pro.				mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		TGGCGCCGCCCCCTCCCGGAAT	0.619000													14	72					0	0	6.4e-05	0	0
KLHL1	57626	broad.mit.edu	37	13	70314608	70314608	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr13:70314608C>T	uc001vip.2	-	8	2514	c.1720G>A	c.(1720-1722)GAT>AAT	p.D574N	KLHL1_uc010thm.1_Missense_Mutation_p.D513N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	574	Kelch 3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CTCTGTGGATCCCACCTTTCC	0.413000													14	15					0	0	0.000308642	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215844	20215844	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:20215844C>T	uc010tkt.1	+	1	258	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TAGGGGATTTCCTACAGCAGG	0.458000													15	39					0	0	0.000308642	0	0
OR4N2	390429	broad.mit.edu	37	14	20295871	20295871	+	Silent	SNP	G	A	A	rs144051874	byFrequency	TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:20295871G>A	uc010tkv.1	+	1	264	c.264G>A	c.(262-264)GCG>GCA	p.A88A		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCTCTCTGCGAAGAAGATAA	0.517000													33	69					0	0	0.00283554	0	0
OR4K1	79544	broad.mit.edu	37	14	20404233	20404233	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:20404233G>A	uc001vwj.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTACAATTATGAACCGGAGGC	0.443000													15	35					0	0	0.000308642	0	0
NFATC4	4776	broad.mit.edu	37	14	24839398	24839398	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:24839398C>T	uc001wpc.2	+	2	1115	c.794C>T	c.(793-795)CCA>CTA	p.P265L	NFATC4_uc010tok.1_Missense_Mutation_p.P328L|NFATC4_uc010tol.1_Missense_Mutation_p.P328L|NFATC4_uc010alr.2_Missense_Mutation_p.P328L|NFATC4_uc010als.2_Missense_Mutation_p.P278L|NFATC4_uc010tom.1_Missense_Mutation_p.P278L|NFATC4_uc010ton.1_Missense_Mutation_p.P278L|NFATC4_uc010too.1_Missense_Mutation_p.P278L|NFATC4_uc010alt.2_Missense_Mutation_p.P297L|NFATC4_uc010top.1_Missense_Mutation_p.P297L|NFATC4_uc010toq.1_Missense_Mutation_p.P297L|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Missense_Mutation_p.P265L|NFATC4_uc010tos.1_Missense_Mutation_p.P195L|NFATC4_uc010tot.1_Missense_Mutation_p.P253L|NFATC4_uc010tou.1_Missense_Mutation_p.P195L|NFATC4_uc010tov.1_Missense_Mutation_p.P253L|NFATC4_uc010tow.1_Missense_Mutation_p.P195L|NFATC4_uc010alv.2_Missense_Mutation_p.P253L|NFATC4_uc010tox.1_Missense_Mutation_p.P195L|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	265	Pro-rich.|2 approximate SP repeats.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CCTGCCTCTCCATGTGGCAAG	0.682000													4	10					0	0	0.000602214	0	0
AKAP6	9472	broad.mit.edu	37	14	33293521	33293521	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:33293521G>A	uc001wrq.2	+	13	6672	c.6502G>A	c.(6502-6504)GAG>AAG	p.E2168K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2168					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGATGGAGAGGAGCCTTGTTT	0.478000													10	17					0	0	0.000673444	0	0
DLGAP5	9787	broad.mit.edu	37	14	55655683	55655683	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:55655683G>A	uc001xbs.2	-	2	432	c.215C>T	c.(214-216)CCA>CTA	p.P72L	DLGAP5_uc001xbt.2_Missense_Mutation_p.P72L	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	72					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						GGTCTTTTCTGGAACAAGCCC	0.343000													9	22					0	0	0.000442599	0	0
PRKCH	5583	broad.mit.edu	37	14	62016412	62016412	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:62016412G>A	uc001xfn.2	+	14	2220	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PRKCH_uc010tsa.1_Missense_Mutation_p.E478K|PRKCH_uc010tsb.1_Missense_Mutation_p.E207K|PRKCH_uc001xfo.2_RNA	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	639	AGC-kinase C-terminal.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		GAAATCCCGAGAAGATGTCAG	0.413000													24	48					0	0	0.00178596	0	0
NEK9	91754	broad.mit.edu	37	14	75570664	75570664	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:75570664G>A	uc001xrl.2	-	14	1766	c.1612C>T	c.(1612-1614)CAA>TAA	p.Q538*	NEK9_uc001xrk.2_Nonsense_Mutation_p.Q38*	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	538	RCC1 3.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		CAGCCACATTGAACTGCAACA	0.408000													9	24					0	0	0.000442599	0	0
KIAA1409	57578	broad.mit.edu	37	14	93954022	93954022	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:93954022G>A	uc001ybv.1	+	2	185	c.102G>A	c.(100-102)AGG>AGA	p.R34R	KIAA1409_uc001ybs.1_Silent_p.R34R|KIAA1409_uc001ybu.1_Silent_p.R34R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	211						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCTCCTCAAGGAGAGAAGGTG	0.418000													18	74					0	0	0.00121646	0	0
BDKRB2	624	broad.mit.edu	37	14	96706842	96706842	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:96706842C>T	uc010avm.1	+	3	373	c.177C>T	c.(175-177)ATC>ATT	p.I59I	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.I32I|BDKRB2_uc001yfg.2_Silent_p.I59I	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	59	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		TCAACACCATCCAGCCCCCCT	0.597000													27	90					0	0	0.000878237	0	0
MIR154	406946	broad.mit.edu	37	14	101526114	101526114	+	RNA	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr14:101526114C>T	hsa-mir-154|MI0000480	+			c.23C>T			uc010awg.2_RNA|MIR496_hsa-mir-496|MI0003136_5'Flank|uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						GATAGGTTATCCGTGTTGCCT	0.498000													27	74					0	0	0.001512	0	0
C15orf2	23742	broad.mit.edu	37	15	24923674	24923674	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:24923674C>T	uc001ywo.2	+	1	3134	c.2660C>T	c.(2659-2661)TCC>TTC	p.S887F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	887					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACCACAACTTCCAGCCATCCT	0.502000													23	73					0	0	0.00278032	0	0
GABRA5	2558	broad.mit.edu	37	15	27185163	27185163	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:27185163G>A	uc001zbd.1	+	10	1155	c.816G>A	c.(814-816)GTG>GTA	p.V272V	GABRB3_uc001zbb.2_5'Flank	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	272	Helical; (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TAATGACCGTGATCTTATCAC	0.493000													11	14					0	0	0.000673444	0	0
SPINT1	6692	broad.mit.edu	37	15	41146714	41146714	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:41146714G>A	uc001zna.2	+	7	1312	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K	SPINT1_uc001znb.2_Missense_Mutation_p.E354K|SPINT1_uc001znc.2_Missense_Mutation_p.E354K|SPINT1_uc010ucs.1_Missense_Mutation_p.E361K	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	370	LDL-receptor class A.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GGCTGCCTGTGAAAAATGTGA	0.627000													15	23					0	0	0.000422831	0	0
TLN2	83660	broad.mit.edu	37	15	62948154	62948154	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:62948154G>A	uc002alb.3	+	5	529	c.529G>A	c.(529-531)GAT>AAT	p.D177N		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	177	FERM.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AAATTGGCTGGATCACAGCCG	0.378000													9	20					0	0	0.000673444	0	0
TLN2	83660	broad.mit.edu	37	15	63097861	63097861	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:63097861G>A	uc002alb.3	+	48	6540	c.6540G>A	c.(6538-6540)ACG>ACA	p.T2180T	TLN2_uc002alc.3_Silent_p.T573T	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2180					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TAAGGATGACGAAAGGCATCA	0.473000													9	26					0	0	0.000442599	0	0
THSD4	79875	broad.mit.edu	37	15	71447252	71447252	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:71447252C>T	uc002atb.1	+	2	159	c.80C>T	c.(79-81)CCC>CTC	p.P27L		NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	27						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TGCCCACAGCCCTCCACTCAA	0.532000													9	37					0	0	0.000274275	0	0
UBL7	84993	broad.mit.edu	37	15	74742300	74742300	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:74742300G>A	uc002axw.1	-	7	803	c.641C>T	c.(640-642)TCC>TTC	p.S214F	UBL7_uc002axx.1_Missense_Mutation_p.S254F|UBL7_uc010bjr.1_Missense_Mutation_p.S105F|UBL7_uc002axy.1_Missense_Mutation_p.S214F|UBL7_uc002axz.1_Missense_Mutation_p.S214F	NM_032907	NP_116296	Q96S82	UBL7_HUMAN	ubiquitin-like 7	214							protein binding			ovary(1)	1						GTATGAGCTGGAGGGCATGCT	0.592000													6	14					0	0	0.000274275	0	0
PTPN9	5780	broad.mit.edu	37	15	75798234	75798234	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:75798234G>A	uc002bal.2	-	7	1258	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	250						cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCTGGGGTAGGAACTGGAAAT	0.537000													12	21					0	0	0.00185496	0	0
ANPEP	290	broad.mit.edu	37	15	90340813	90340813	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr15:90340813G>A	uc002bop.3	-	15	2442	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	717	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TACCTTCATGGGGCCATAGAC	0.527000													26	58					0	0	0.000878237	0	0
MSLNL	401827	broad.mit.edu	37	16	830203	830203	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:830203G>A	uc002cjz.1	-	3	798	c.798C>T	c.(796-798)GCC>GCT	p.A266A		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CGGGAGCAGGGGCCGGGGCAT	0.677000													5	17					0	0	0.000602214	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270291	1270291	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:1270291C>T	uc002cks.2	+	35	6607	c.6359C>T	c.(6358-6360)CCC>CTC	p.P2120L	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2114L|CACNA1H_uc002cku.2_Missense_Mutation_p.P815L|CACNA1H_uc010brj.2_Missense_Mutation_p.P831L|CACNA1H_uc002ckv.2_Missense_Mutation_p.P809L	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2120	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CCCCATGGCCCCGAAGCCTCT	0.731000													4	12					0	0	0.000602214	0	0
MEFV	4210	broad.mit.edu	37	16	3293408	3293408	+	Missense_Mutation	SNP	C	T	T	rs104895215		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:3293408C>T	uc002cun.1	-	10	2119	c.2079G>A	c.(2077-2079)ATG>ATA	p.M693I		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	693	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	TTTCCTTCATCATTATCACCA	0.537000													13	77					0	0	0.000422831	0	0
C16orf89	146556	broad.mit.edu	37	16	5112557	5112557	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:5112557C>T	uc010bud.2	-	2	429	c.341G>A	c.(340-342)CGG>CAG	p.R114Q	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.R114Q	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	76						extracellular region				ovary(1)|skin(1)	2						CCACTTCTCCCGGACACTTTT	0.542000													9	32					0	0	0.000978159	0	0
FAM18A	780776	broad.mit.edu	37	16	10867224	10867224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:10867224C>T	uc010buo.1	-	5	670	c.399G>A	c.(397-399)ATG>ATA	p.M133I	FAM18A_uc010uyr.1_RNA|FAM18A_uc010uys.1_RNA|FAM18A_uc010uyt.1_RNA|FAM18A_uc010bun.2_RNA|FAM18A_uc010uyu.1_RNA|FAM18A_uc002dad.3_RNA|FAM18A_uc002daf.1_RNA|FAM18A_uc002dae.1_Missense_Mutation_p.M69I	NM_001079512	NP_001072980	A6NH52	FA18A_HUMAN	hypothetical protein LOC780776	133	Helical; (Potential).					integral to membrane					0						CAATCCATATCATGGGGCAGA	0.423000													21	48					0	0	0.00152264	0	0
ITGAX	3687	broad.mit.edu	37	16	31374270	31374270	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:31374270C>T	uc002ebu.1	+	13	1441	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	ITGAX_uc002ebt.2_Silent_p.F458F|ITGAX_uc010vfk.1_Silent_p.F108F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	458	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTCCTACTTCGGGGCCTCCC	0.677000													18	52					0	0	0.00121646	0	0
ACD	65057	broad.mit.edu	37	16	67694229	67694229	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:67694229G>A	uc002etq.3	-	1	490	c.153C>T	c.(151-153)CTC>CTT	p.L51L	ACD_uc002etp.3_Silent_p.L51L|ACD_uc002etr.3_Silent_p.L51L|ACD_uc010vjt.1_Silent_p.L41L|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	51					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGGGCCGGAGGAGGAGGCCCC	0.751000													5	8					0	0	0.00116845	0	0
HYDIN	54768	broad.mit.edu	37	16	70917898	70917898	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:70917898C>T	uc002ezr.2	-	59	10029	c.9901G>A	c.(9901-9903)GAT>AAT	p.D3301N		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3302										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCGGAGATATCGATGGCTATA	0.547000													5	31					0	0	0.00116845	0	0
WDR59	79726	broad.mit.edu	37	16	74976658	74976658	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:74976658T>A	uc002fdh.1	-	7	614	c.512A>T	c.(511-513)GAT>GTT	p.D171V	WDR59_uc002fdi.2_Missense_Mutation_p.D171V|WDR59_uc002fdj.2_Missense_Mutation_p.D171V	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	171	WD 3.									ovary(1)|breast(1)	2						TATCCGCACATCGCCGTCATG	0.483000													6	24					0	0	0.00198382	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482664	76482664	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:76482664G>A	uc002feu.1	+	8	1128	c.743G>A	c.(742-744)GGT>GAT	p.G248D	CNTNAP4_uc002fev.1_Missense_Mutation_p.G160D|CNTNAP4_uc010chb.1_Missense_Mutation_p.G223D|CNTNAP4_uc002fex.1_Missense_Mutation_p.G251D|CNTNAP4_uc002few.2_Missense_Mutation_p.G223D	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	248	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTCTTCTAAGGTGAAGCTAAA	0.443000													3	6					0	0	6.4e-05	0	0
OR1A1	8383	broad.mit.edu	37	17	3119002	3119002	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:3119002C>T	uc010vrc.1	+	1	88	c.88C>T	c.(88-90)CTC>TTC	p.L30F		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTCTACATCCTCTTCTTGTT	0.443000													28	35					0	0	0.00106085	0	0
NLGN2	57555	broad.mit.edu	37	17	7318893	7318893	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:7318893C>T	uc002ggt.1	+	6	1174	c.1101C>T	c.(1099-1101)CTC>CTT	p.L367L		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	367	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				CTGAGATCCTCATGCAGCAGG	0.612000													20	43					0	0	0.000958276	0	0
MYH1	4619	broad.mit.edu	37	17	10395819	10395819	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:10395819C>T	uc002gmo.2	-	40	5828	c.5734G>A	c.(5734-5736)GAA>AAA	p.E1912K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1912	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCAGCCCGTTCCTCGGCCTCC	0.483000													30	30					0	0	0.00178596	0	0
MYH2	4620	broad.mit.edu	37	17	10428305	10428305	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:10428305C>T	uc010coi.2	-	34	4868	c.4740G>A	c.(4738-4740)AGG>AGA	p.R1580R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1580R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1580	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGCAATTTTCCTATCAACCT	0.453000													23	39					0	0	0.00047179	0	0
RICH2	9912	broad.mit.edu	37	17	12823142	12823142	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:12823142G>A	uc002gnr.3	+	6	785	c.458G>A	c.(457-459)CGA>CAA	p.R153Q	RICH2_uc010vvk.1_Missense_Mutation_p.R153Q|RICH2_uc010vvl.1_Missense_Mutation_p.R153Q|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.R153Q|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	153	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GATTCCTCACGAACCAGGTAG	0.383000													4	6					0	0	0.00024832	0	0
ADAP2	55803	broad.mit.edu	37	17	29284864	29284864	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:29284864G>A	uc002hfx.2	+	11	1402	c.1123G>A	c.(1123-1125)GAG>AAG	p.E375K	ADAP2_uc010csk.2_Missense_Mutation_p.E381K|ADAP2_uc002hfy.2_Missense_Mutation_p.E374K|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	375					heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						TGCATCAACAGAGAGTGGCCG	0.572000													3	7					0	0	6.4e-05	0	0
CWC25	54883	broad.mit.edu	37	17	36958426	36958426	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:36958426G>A	uc002hqu.2	-	10	1350	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	CWC25_uc010wdv.1_Silent_p.S336S|PIP4K2B_uc002hqs.2_5'Flank|PIP4K2B_uc010wdt.1_5'Flank	NM_017748	NP_060218	Q9NXE8	CWC25_HUMAN	coiled-coil domain containing 49	399											0						GATCCTCCAGGGAGGAAGTAG	0.438000													9	23					0	0	0.000274275	0	0
KRT31	3881	broad.mit.edu	37	17	39551128	39551129	+	Missense_Mutation	DNP	GG	AA	AA	rs143943601		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:39551128_39551129GG>AA	uc002hwn.2	-	6	1121_1122	c.1068_1069CC>TT	c.(1066-1071)TACCGG>TATTGG	p.R357W	KRT31_uc010cxn.2_Missense_Mutation_p.R357W	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	357	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				AGCAGGCTCCGGTATGTGTTGA	0.559000													25	65					0	0	6.4e-05	0	0
WNK4	65266	broad.mit.edu	37	17	40932965	40932965	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:40932965C>T	uc002ibj.2	+	1	270	c.249C>T	c.(247-249)CCC>CCT	p.P83P	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	83					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CTCCGGACCCCCCCGATCCTC	0.711000													6	16					0	0	0.00116845	0	0
CD300LG	146894	broad.mit.edu	37	17	41926191	41926191	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:41926191G>A	uc002iem.2	+	2	350	c.309G>A	c.(307-309)GGG>GGA	p.G103G	CD300LG_uc002iek.1_Silent_p.G103G|CD300LG_uc002iel.1_Silent_p.G103G|CD300LG_uc010czk.2_Silent_p.G103G|CD300LG_uc010wil.1_Silent_p.G103G|CD300LG_uc010czl.2_Silent_p.G103G	NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	103	Extracellular (Potential).|Ig-like V-type.					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		AAGACGCTGGGGAGTACTGGT	0.572000													24	46					0	0	0.00209593	0	0
PLCD3	113026	broad.mit.edu	37	17	43194006	43194006	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:43194006G>A	uc002iib.2	-	8	1520	c.1406C>T	c.(1405-1407)TCC>TTC	p.S469F		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	469	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	CACCTCTGGGGATGGCAGCTC	0.692000													14	24					0	0	0.000422831	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48599379	48599379	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:48599379C>T	uc010wmr.1	+	10	1485	c.1323C>T	c.(1321-1323)GGC>GGT	p.G441G	MYCBPAP_uc002iqx.2_Silent_p.G441G|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	404					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CTATTCTCGGCCCTTCTCTGC	0.517000													11	58					0	0	0.00136819	0	0
BCAS3	54828	broad.mit.edu	37	17	58952089	58952089	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:58952089C>T	uc002iyv.3	+	9	760	c.651C>T	c.(649-651)TTC>TTT	p.F217F	BCAS3_uc010wow.1_Intron|BCAS3_uc002iyu.3_Silent_p.F217F|BCAS3_uc002iyw.3_Silent_p.F213F	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	217						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			CGAAGAAATTCTTTGTTACAA	0.333000													10	31					0	0	0.000978159	0	0
KIF19	124602	broad.mit.edu	37	17	72340379	72340379	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr17:72340379C>T	uc002jkm.3	+	6	612	c.474C>T	c.(472-474)ATC>ATT	p.I158I	KIF19_uc002jkj.2_Silent_p.I158I|KIF19_uc002jkk.2_Intron|KIF19_uc002jkl.2_Intron	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	158	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						ATGAGATGATCCGGGACCTGC	0.617000													9	18					0	0	0.000442599	0	0
DSC1	1823	broad.mit.edu	37	18	28712616	28712616	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:28712616C>T	uc002kwn.2	-	14	2415	c.2153G>A	c.(2152-2154)AGA>AAA	p.R718K	DSC1_uc002kwm.2_Missense_Mutation_p.R718K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	718	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CTTGACTGTTCTCTTAGCAGT	0.313000													12	22					0	0	0.000978159	0	0
DSG4	147409	broad.mit.edu	37	18	28968370	28968370	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:28968370G>A	uc002kwq.2	+	4	392	c.257G>A	c.(256-258)CGG>CAG	p.R86Q	DSG4_uc002kwr.2_Missense_Mutation_p.R86Q	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	86	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATAACATACCGGATTTCTGGA	0.393000													6	13					0	0	0.00116845	0	0
MYO5B	4645	broad.mit.edu	37	18	47511133	47511133	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:47511133C>T	uc002leb.2	-	8	1189	c.901G>A	c.(901-903)GAT>AAT	p.D301N	MYO5B_uc002lec.1_Missense_Mutation_p.D300N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	301	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCCTCAGCATCGTCCACACCC	0.552000													26	37					0	0	0.00106085	0	0
DCC	1630	broad.mit.edu	37	18	51025841	51025841	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:51025841G>A	uc002lfe.1	+	27	4659	c.4072G>A	c.(4072-4074)GAA>AAA	p.E1358K	DCC_uc010dpf.1_Missense_Mutation_p.E991K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1358	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GAGTGCAATAGAACCGAAAGT	0.458000													17	70					0	0	0.000566183	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324085	61324085	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:61324085C>T	uc002ljg.2	-	6	774	c.748G>A	c.(748-750)GAA>AAA	p.E250K	SERPINB3_uc002lji.2_Missense_Mutation_p.E250K|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	250					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CCATCGATTTCATTTGGCAGC	0.413000													23	68					0	0	0.000586117	0	0
ADNP2	22850	broad.mit.edu	37	18	77894726	77894726	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr18:77894726C>T	uc002lnw.2	+	4	1885	c.1430C>T	c.(1429-1431)CCT>CTT	p.P477L		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	477					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		GGGGTTCTTCCTACTGGCCAG	0.597000													9	27					0	0	0.000673444	0	0
EMR1	2015	broad.mit.edu	37	19	6896500	6896500	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:6896500C>T	uc002mfw.2	+	3	224	c.186C>T	c.(184-186)TTC>TTT	p.F62F	EMR1_uc010dvc.2_Silent_p.F62F|EMR1_uc010dvb.2_Silent_p.F62F|EMR1_uc010xji.1_Silent_p.F62F|EMR1_uc010xjj.1_Silent_p.F62F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	62	Extracellular (Potential).|EGF-like 1.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AACAAGGCTTCCTGTCCAGCA	0.473000													20	26					0	0	0.00121646	0	0
MUC16	94025	broad.mit.edu	37	19	9060012	9060012	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:9060012G>A	uc002mkp.2	-	3	27638	c.27434C>T	c.(27433-27435)TCT>TTT	p.S9145F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9147	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTGAGAAAGAGGCAGAGCT	0.493000													8	22					0	0	0.000157383	0	0
CCDC151	115948	broad.mit.edu	37	19	11537855	11537855	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:11537855C>T	uc002mrs.2	-	4	593	c.450G>A	c.(448-450)CTG>CTA	p.L150L	CCDC151_uc002mrr.2_Silent_p.L85L|CCDC151_uc010dxz.2_Silent_p.L124L	NM_145045	NP_659482	A5D8V7	CC151_HUMAN	coiled-coil domain containing 151	150	Potential.									ovary(1)	1						CTAGGTGCTCCAGGGCCTGCC	0.652000													4	6					0	0	0.00024832	0	0
ZNF208	7757	broad.mit.edu	37	19	22157069	22157069	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:22157069G>A	uc002nqp.2	-	4	916	c.767C>T	c.(766-768)TCC>TTC	p.S256F	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACATTTGTAGGATTTCTCTCC	0.358000													7	16					0	0	0.00198382	0	0
LIPE	3991	broad.mit.edu	37	19	42930475	42930475	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:42930475C>T	uc002otr.2	-	1	1104	c.827G>A	c.(826-828)GGG>GAG	p.G276E	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	276					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				TGGCGACGTCCCACTGTATCC	0.502000													22	72					0	0	0.000878237	0	0
IRGC	56269	broad.mit.edu	37	19	44222942	44222942	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:44222942G>A	uc002oxh.2	+	2	379	c.232G>A	c.(232-234)GAG>AAG	p.E78K		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	78						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				GCGTGGCCTGGAGGCCGAGGA	0.682000													15	30					0	0	0.000566183	0	0
IZUMO1	284359	broad.mit.edu	37	19	49244255	49244255	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:49244255G>A	uc002pkj.2	-	10	1511	c.963C>T	c.(961-963)TTC>TTT	p.F321F	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	321	Cytoplasmic (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		AGGATTTGATGAAATCGATCA	0.512000													8	29					0	0	0.000673444	0	0
ZNF816A	125893	broad.mit.edu	37	19	53454132	53454132	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:53454132G>A	uc002qal.1	-	5	1197	c.896C>T	c.(895-897)TCC>TTC	p.S299F	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.S283F	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	299	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GCATACAAGGGATGACATCTG	0.408000													24	53					0	0	0.00278032	0	0
ZNF347	84671	broad.mit.edu	37	19	53645692	53645692	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:53645692G>A	uc002qbb.1	-	5	458	c.389C>T	c.(388-390)TCC>TTC	p.S130F	ZNF347_uc010eql.1_Missense_Mutation_p.S131F|ZNF347_uc002qbc.1_Missense_Mutation_p.S131F	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TTCCCTGAAGGAACATCCTTC	0.403000													14	36					0	0	0.00185496	0	0
LILRP2	79166	broad.mit.edu	37	19	55221553	55221553	+	RNA	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:55221553G>A	uc002qgs.1	+	1		c.1953G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						TCTCCCACGGGGGCCAGTACA	0.677000													10	17					0	0	0.000978159	0	0
NLRP5	126206	broad.mit.edu	37	19	56538530	56538530	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:56538530G>A	uc002qmj.2	+	7	931	c.931G>A	c.(931-933)GGA>AGA	p.G311R	NLRP5_uc002qmi.2_Missense_Mutation_p.G292R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	311	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ACTCTACCAGGGAATGTTCTC	0.572000													3	6					0	0	6.4e-05	0	0
ZNF814	730051	broad.mit.edu	37	19	58385762	58385762	+	Silent	SNP	C	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:58385762C>G	uc002qqo.2	-	3	1268	c.996G>C	c.(994-996)TCG>TCC	p.S332S	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	332	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						ATTTGCTAAACGATTTCCCAC	0.358000													2	5					0	0	6.4e-05	0	0
ZNF135	7694	broad.mit.edu	37	19	58579313	58579313	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:58579313C>T	uc010yhq.1	+	5	1593	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	ZNF135_uc002qre.2_Silent_p.I487I|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Silent_p.I445I|ZNF135_uc002qrg.2_Silent_p.I457I|ZNF135_uc010yhr.1_Silent_p.I308I	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	499					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		ACCAGCGAATCCACACAGGGG	0.572000													6	23					0	0	0.00116845	0	0
CIB4	130106	broad.mit.edu	37	2	26852339	26852339	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:26852339C>T	uc002rhm.2	-	3	154	c.125G>A	c.(124-126)GGG>GAG	p.G42E		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	42							calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTAGTACTTCCCAGGAGGGCA	0.612000													3	8					0	0	0.00024832	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656052	40656053	+	Missense_Mutation	DNP	AA	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:40656052_40656053AA>TT	uc002rrx.2	-	1	1392_1393	c.1368_1369TT>AA	c.(1366-1371)GATTAT>GAAAAT	p.456_457DY>EN	SLC8A1_uc002rry.2_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc002rrz.2_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc002rsa.2_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc002rsd.3_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc002rsb.1_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc010fan.1_Missense_Mutation_p.456_457DY>EN|SLC8A1_uc002rsc.1_Missense_Mutation_p.456_457DY>EN	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	456_457	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GTAAATTCATAATCAGACCCAG	0.431000													8	19					0	0	6.4e-05	0	0
DYSF	8291	broad.mit.edu	37	2	71871148	71871148	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:71871148G>A	uc002sie.2	+	41	4840	c.4464G>A	c.(4462-4464)AGG>AGA	p.R1488R	DYSF_uc010feg.2_Silent_p.R1519R|DYSF_uc010feh.2_Silent_p.R1495R|DYSF_uc002sig.3_Silent_p.R1474R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.R1509R|DYSF_uc010fef.2_Silent_p.R1526R|DYSF_uc010fei.2_Silent_p.R1505R|DYSF_uc010fek.2_Silent_p.R1506R|DYSF_uc010fej.2_Silent_p.R1496R|DYSF_uc010fel.2_Silent_p.R1475R|DYSF_uc010feo.2_Silent_p.R1520R|DYSF_uc010fem.2_Silent_p.R1510R|DYSF_uc010fen.2_Silent_p.R1527R|DYSF_uc002sif.2_Silent_p.R1489R|DYSF_uc010yqy.1_Silent_p.R369R|DYSF_uc010yqz.1_Silent_p.R249R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1488	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TAGGGGAGAGGGAAAAGTGCG	0.517000													3	7					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	2	89246995	89246995	+	RNA	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:89246995G>A	uc010ytr.1	-	101		c.8064C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGTTTCTGCTGATACCAGGCC	0.532000													22	56					0	0	0.00278032	0	0
NEURL3	93082	broad.mit.edu	37	2	97166168	97166168	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:97166168C>T	uc010yuo.1	-	2	593	c.522G>A	c.(520-522)GCG>GCA	p.A174A	NEURL3_uc010fhx.2_Intron|NEURL3_uc002swc.2_Intron					SubName: Full=cDNA FLJ54814;												0						TCCCCATGGTCGCCTCACCCA	0.662000													5	9					0	0	0.000602214	0	0
ZAP70	7535	broad.mit.edu	37	2	98351794	98351794	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:98351794G>T	uc002syd.1	+	10	1371	c.1164G>T	c.(1162-1164)CAG>CAT	p.Q388H	ZAP70_uc010yvf.1_3'UTR|ZAP70_uc002sye.1_Missense_Mutation_p.Q278H|ZAP70_uc002syf.1_Missense_Mutation_p.Q81H	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	388	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GCGAGGCGCAGATCATGCACC	0.657000													22	51					1.22574e-08	5.55575e-08	0.00229938	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125530530	125530530	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:125530530G>A	uc002tno.2	+	17	3049	c.2685G>A	c.(2683-2685)AGG>AGA	p.R895R	CNTNAP5_uc010flu.2_Silent_p.R896R	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	895	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		ACCTTCCAAGGAGCACCAGGG	0.532000													22	69					0	0	0.000720815	0	0
MYO7B	4648	broad.mit.edu	37	2	128327450	128327450	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:128327450A>G	uc002top.2	+	6	610	c.557A>G	c.(556-558)GAG>GGG	p.E186G		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	186	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TCGTGGATTGAGCAGCAGGTC	0.627000													6	13					0	0	0.00116845	0	0
LRP1B	53353	broad.mit.edu	37	2	141946086	141946086	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:141946086C>T	uc002tvj.1	-	7	1889	c.917G>A	c.(916-918)CGG>CAG	p.R306Q	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	306	Extracellular (Potential).|LDL-receptor class B 2.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AACAAAGATCCGGTCACCGAC	0.413000										TSP Lung(27;0.18)			14	18					0	0	0.00244969	0	0
GALNT13	114805	broad.mit.edu	37	2	155099341	155099341	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:155099341C>T	uc002tyr.3	+	6	1176	c.609C>T	c.(607-609)GTC>GTT	p.V203V	GALNT13_uc002tyt.3_Silent_p.V203V|GALNT13_uc010foc.1_Silent_p.V22V|GALNT13_uc010fod.2_5'Flank	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	203	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AAGGGCAGGTCATAACTTTTC	0.428000													6	15					0	0	0.00198382	0	0
FAP	2191	broad.mit.edu	37	2	163059452	163059452	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:163059452C>T	uc002ucd.2	-	14	1361	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	FAP_uc010zct.1_Missense_Mutation_p.E360K|FAP_uc010fpd.2_Intron	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	385	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						ATAGCATTTTCCTATAAAAAG	0.378000													16	32					0	0	0.000566183	0	0
IFIH1	64135	broad.mit.edu	37	2	163136531	163136531	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:163136531A>G	uc002uce.2	-	8	1838	c.1616T>C	c.(1615-1617)TTT>TCT	p.F539S		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	539					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TGCAATGGCAAACTTCTTGCA	0.343000													12	24					0	0	0.00185496	0	0
SCN3A	6328	broad.mit.edu	37	2	165950892	165950892	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:165950892G>A	uc002ucx.2	-	26	5020	c.4528C>T	c.(4528-4530)CGC>TGC	p.R1510C	SCN3A_uc010zcy.1_5'Flank|SCN3A_uc002ucy.2_Missense_Mutation_p.R1461C|SCN3A_uc002ucz.2_Missense_Mutation_p.R1461C	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1510						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ACTGCTGGGCGAGGTATGGGT	0.393000													65	192					0	0	0.000781405	0	0
SCN2A	6326	broad.mit.edu	37	2	166221713	166221713	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:166221713G>A	uc002udc.2	+	18	3750	c.3460G>A	c.(3460-3462)GGA>AGA	p.G1154R	SCN2A_uc002udd.2_Missense_Mutation_p.G1154R|SCN2A_uc002ude.2_Missense_Mutation_p.G1154R	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1154					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TCCCGCCGAGGGAGAACAGCC	0.413000													16	38					0	0	0.00074312	0	0
XIRP2	129446	broad.mit.edu	37	2	168110563	168110563	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:168110563G>A	uc002udx.2	+	9	10595	c.10577G>A	c.(10576-10578)GGA>GAA	p.G3526E	XIRP2_uc010fpn.2_Missense_Mutation_p.E433K|XIRP2_uc010fpo.2_Missense_Mutation_p.E400K|XIRP2_uc010fpp.2_Missense_Mutation_p.E400K|XIRP2_uc010fpq.2_Missense_Mutation_p.G3304E|XIRP2_uc010fpr.2_Missense_Mutation_p.E178K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3351					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAAGACAAGGAAATATGTAT	0.348000													6	38					0	0	0.000274275	0	0
ITGA6	3655	broad.mit.edu	37	2	173351768	173351768	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:173351768G>A	uc002uhp.1	+	14	2075	c.1872G>A	c.(1870-1872)GAG>GAA	p.E624E	ITGA6_uc010zdy.1_Silent_p.E505E|ITGA6_uc002uho.1_Silent_p.E624E|ITGA6_uc010fqm.1_Silent_p.E270E	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	663	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TCTTAAAAGAGGGATGTGGAG	0.378000													9	14					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179579825	179579825	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:179579825G>A	uc010zfg.1	-	87	22580	c.22356C>T	c.(22354-22356)TTC>TTT	p.F7452F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F4113F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8379							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTGGTTAGGAAGTTCTCAG	0.453000													40	132					0	0	0.00222228	0	0
TMEFF2	23671	broad.mit.edu	37	2	192818523	192818523	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:192818523C>T	uc002utc.2	-	9	1304	c.910G>A	c.(910-912)GAC>AAC	p.D304N		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	304	Required for shedding.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			ACACTGTAGTCCTTTTTTTCA	0.403000													12	31					0	0	0.000978159	0	0
ALS2	57679	broad.mit.edu	37	2	202626056	202626056	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:202626056G>A	uc002uyo.2	-	4	1017	c.661C>T	c.(661-663)CCT>TCT	p.P221S	ALS2_uc002uyp.3_Missense_Mutation_p.P221S|ALS2_uc002uyq.2_Missense_Mutation_p.P221S|ALS2_uc002uyr.2_Missense_Mutation_p.P221S	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	221					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						TCCTGGGAAGGGAGGCATTGT	0.502000													10	34					0	0	0.00136819	0	0
ICOS	29851	broad.mit.edu	37	2	204801594	204801594	+	Silent	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:204801594A>G	uc002vam.2	+	1	124	c.57A>G	c.(55-57)ACA>ACG	p.T19T	ICOS_uc010zip.1_Silent_p.T19T|ICOS_uc010fua.2_Silent_p.T19T	NM_012092	NP_036224	Q9Y6W8	ICOS_HUMAN	inducible T-cell co-stimulator precursor	19					immune response|T cell costimulation	extracellular region					0						AAGTTTTAACAGGTAAGTGGT	0.353000													3	38					0	0	6.4e-05	0	0
PARD3B	117583	broad.mit.edu	37	2	205986532	205986532	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:205986532G>A	uc002var.1	+	8	1231	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N	PARD3B_uc010fub.1_Missense_Mutation_p.D342N|PARD3B_uc002vao.1_Missense_Mutation_p.D342N|PARD3B_uc002vap.1_Missense_Mutation_p.D342N|PARD3B_uc002vaq.1_Missense_Mutation_p.D342N	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	342					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TCCTGAAACAGATGCATCAGC	0.493000													8	15					0	0	0.000442599	0	0
ADAM23	8745	broad.mit.edu	37	2	207310033	207310033	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:207310033C>T	uc002vbq.2	+	2	440	c.217C>T	c.(217-219)CCG>TCG	p.P73S	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	73					cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TCCACCAGCTCCGCATTGGAA	0.408000													8	15					0	0	0.000157383	0	0
ABCA12	26154	broad.mit.edu	37	2	215809796	215809796	+	Silent	SNP	C	T	T	rs150309991		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:215809796C>T	uc002vew.2	-	49	7492	c.7272G>A	c.(7270-7272)TCG>TCA	p.S2424S	ABCA12_uc002vev.2_Silent_p.S2106S|ABCA12_uc010zjn.1_Silent_p.S1351S	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2424	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity	p.S2424S(1)		ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GGTGCCGTTTCGACTTCGGAT	0.363000													8	26					0	0	0.000442599	0	0
TMEM169	92691	broad.mit.edu	37	2	216965155	216965155	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr2:216965155C>T	uc010zjr.1	+	4	1110	c.784C>T	c.(784-786)CTG>TTG	p.L262L	TMEM169_uc010zjs.1_Silent_p.L262L|TMEM169_uc002vfw.2_Silent_p.L262L|TMEM169_uc002vfv.3_Silent_p.L262L	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	262	Extracellular (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAAGCTGGGTCTGGAGGACTG	0.557000													21	66					0	0	0.00229938	0	0
PIGU	128869	broad.mit.edu	37	20	33173253	33173253	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:33173253G>C	uc002xas.2	-	9	1114	c.914C>G	c.(913-915)GCC>GGC	p.A305G	PIGU_uc010zul.1_Missense_Mutation_p.A305G|PIGU_uc002xat.2_Missense_Mutation_p.A285G|PIGU_uc010gev.1_RNA	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	305	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						TAGCTTTATGGCTAAGGGGAT	0.483000													23	65					0	0	0.000586117	0	0
NCOA6	23054	broad.mit.edu	37	20	33337510	33337511	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:33337510_33337511GG>AC	uc002xav.2	-	10	5058_5059	c.2487_2488CC>GT	c.(2485-2490)GTCCCC>GTGTCC	p.P830S	NCOA6_uc002xaw.2_Missense_Mutation_p.P830S	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	830	TBP/GTF2A-binding region.|NCOA1-binding region.|NCOA6IP-binding region.|CREBBP-binding region.|Gln-rich.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						ACATGAGGGGGGACCATGTTGG	0.505000													17	67					0	0	6.4e-05	0	0
TRPC4AP	26133	broad.mit.edu	37	20	33593574	33593574	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:33593574G>A	uc002xbk.2	-	16	1894	c.1860C>T	c.(1858-1860)TCC>TCT	p.S620S	TRPC4AP_uc002xbj.2_RNA|TRPC4AP_uc010zuq.1_Silent_p.S211S|TRPC4AP_uc002xbl.2_Silent_p.S612S|TRPC4AP_uc010zur.1_Silent_p.S581S	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	620					protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			AGTCCACCAGGGAGCTGTTGA	0.547000													16	44					0	0	0.000566183	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37546850	37546850	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:37546850C>T	uc002xje.2	+	11	1434	c.1245C>T	c.(1243-1245)ATC>ATT	p.I415I	PPP1R16B_uc010ggc.2_Silent_p.I373I	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	415					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CTACCAAGATCCCACGAGGTG	0.567000													37	102					0	0	0.000814825	0	0
ELMO2	63916	broad.mit.edu	37	20	45015985	45015985	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:45015985T>C	uc002xrt.1	-	8	727	c.517A>G	c.(517-519)ATT>GTT	p.I173V	ELMO2_uc002xru.1_Missense_Mutation_p.I173V|ELMO2_uc010zxr.1_Missense_Mutation_p.I173V|ELMO2_uc010zxs.1_Intron|ELMO2_uc002xrw.2_5'Flank|ELMO2_uc002xrx.1_Missense_Mutation_p.I173V	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	173					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				ACCTGCTTAATAAAGGTGATT	0.507000													5	13					0	0	0.00198382	0	0
HRH3	11255	broad.mit.edu	37	20	60794874	60794874	+	Silent	SNP	G	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:60794874G>C	uc002ycf.2	-	1	450	c.153C>G	c.(151-153)GGC>GGG	p.G51G	HRH3_uc002ycg.2_Silent_p.G51G|HRH3_uc002ych.2_Silent_p.G51G|HRH3_uc002yci.2_Silent_p.G51G	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	51	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	CCAGCGCGTTGCCCAGCACCG	0.552000													4	9					0	0	0.00024832	0	0
COL20A1	57642	broad.mit.edu	37	20	61957051	61957051	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr20:61957051G>A	uc011aau.1	+	29	3480	c.3380G>A	c.(3379-3381)AGA>AAA	p.R1127K	COL20A1_uc011aav.1_Missense_Mutation_p.R948K	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	1127	Collagen-like 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					ATCCCCGGGAGAGTTGGCCTC	0.697000													7	15					0	0	0.000274275	0	0
BAGE2	85319	broad.mit.edu	37	21	11058168	11058168	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:11058168A>T	uc002yit.1	-	3	480	c.272T>A	c.(271-273)CTG>CAG	p.L91Q	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACATCTTTCAGGAGCTTGGT	0.388000													4	26					0	0	0.000274275	0	0
GART	2618	broad.mit.edu	37	21	34901165	34901165	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:34901165G>A	uc002yrx.2	-	8	937	c.802C>T	c.(802-804)CCA>TCA	p.P268S	GART_uc002yrz.2_Missense_Mutation_p.P268S|GART_uc010gmd.2_5'UTR|GART_uc002yry.2_Missense_Mutation_p.P268S|GART_uc002ysa.2_Missense_Mutation_p.P268S	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	268	ATP-grasp.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CCTGTATATGGAGTACCCTCT	0.368000													6	27					0	0	0.00198382	0	0
HLCS	3141	broad.mit.edu	37	21	38309303	38309303	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:38309303G>A	uc010gnb.2	-	4	1643	c.442C>T	c.(442-444)CCC>TCC	p.P148S	HLCS_uc002yvs.2_Missense_Mutation_p.P148S|HLCS_uc010gnc.1_Missense_Mutation_p.P295S	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	148					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TCTCTTTCGGGGGAGGTCTCA	0.557000													7	20					0	0	0.000157383	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066500	46066500	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:46066500C>T	uc002zfr.3	+	1	170	c.125C>T	c.(124-126)TCC>TTC	p.S42F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	42	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						CCGGCCCCCTCCCTGAGCCTG	0.706000													10	25					0	0	0.000978159	0	0
COL18A1	80781	broad.mit.edu	37	21	46876034	46876034	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:46876034C>T	uc011afs.1	+	1	611	c.590C>T	c.(589-591)TCC>TTC	p.S197F	COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Missense_Mutation_p.S197F	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	197					cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TCGCCTCCCTCCCTGGGCAGG	0.682000													12	39					0	0	0.00136819	0	0
COL6A2	1292	broad.mit.edu	37	21	47531410	47531410	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr21:47531410C>T	uc002zia.1	+	2	102	c.20C>T	c.(19-21)TCC>TTC	p.S7F	COL6A2_uc002zhy.1_Missense_Mutation_p.S7F|COL6A2_uc002zhz.1_Missense_Mutation_p.S7F|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	7					axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGCACCTGCTCCGTGCTCCTG	0.657000													10	18					0	0	0.000978159	0	0
MYO18B	84700	broad.mit.edu	37	22	26423441	26423441	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr22:26423441G>A	uc003abz.1	+	43	7751	c.7501G>A	c.(7501-7503)GAT>AAT	p.D2501N	MYO18B_uc003aca.1_Missense_Mutation_p.D2382N|MYO18B_uc010guy.1_Missense_Mutation_p.D2383N|MYO18B_uc010guz.1_Missense_Mutation_p.D2381N|MYO18B_uc011aka.1_Missense_Mutation_p.D1655N|MYO18B_uc011akb.1_Missense_Mutation_p.D2014N|MYO18B_uc010gva.1_Missense_Mutation_p.D484N|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2501						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCCCAAGGAGGATCCCGCTCA	0.532000													8	8					0	0	0.000274275	0	0
C22orf30	253143	broad.mit.edu	37	22	32072955	32072955	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr22:32072955G>A	uc003alo.1	-	6	5682	c.5626C>T	c.(5626-5628)CTG>TTG	p.L1876L		NM_173566	NP_775837	Q5THK1	PR14L_HUMAN	hypothetical protein LOC253143	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						CCGAATACCAGGAAGTGCCCG	0.597000													4	13					0	0	0.00024832	0	0
DDX17	10521	broad.mit.edu	37	22	38884057	38884057	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr22:38884057T>C	uc003avy.3	-	12	1614	c.1511A>G	c.(1510-1512)CAC>CGC	p.H504R	DDX17_uc003avw.3_5'UTR|DDX17_uc010gxp.2_5'UTR|DDX17_uc003avx.3_Missense_Mutation_p.H504R	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	425	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					GCCAATACGGTGCACATAATC	0.478000													18	51					0	0	0.00074312	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681488	44681488	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr22:44681488C>T	uc003bet.2	-	4	552	c.419G>A	c.(418-420)CGA>CAA	p.R140Q		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	140	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TTTCATCCATCGTCCTTGGAT	0.637000													22	52					0	0	0.00188189	0	0
CHL1	10752	broad.mit.edu	37	3	369855	369855	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:369855C>T	uc003bou.2	+	5	474	c.203C>T	c.(202-204)TCG>TTG	p.S68L	CHL1_uc003bot.2_Missense_Mutation_p.S68L|CHL1_uc003bow.1_Missense_Mutation_p.S68L|CHL1_uc011asi.1_Missense_Mutation_p.S68L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	68	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTTAGATTTTCGTGGACTAAG	0.338000													22	28					0	0	0.00278032	0	0
BRPF1	7862	broad.mit.edu	37	3	9781055	9781055	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:9781055C>T	uc003bse.2	+	3	1371	c.972C>T	c.(970-972)CCC>CCT	p.P324P	BRPF1_uc003bsf.2_Silent_p.P324P|BRPF1_uc003bsg.2_Silent_p.P324P|BRPF1_uc011ati.1_Silent_p.P324P	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	324					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					TGCAGTCACCCTCTCGTGCTG	0.622000													22	22					0	0	0.00188189	0	0
EOMES	8320	broad.mit.edu	37	3	27759079	27759079	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:27759079G>A	uc003cdx.2	-	6	1543	c.1543C>T	c.(1543-1545)CCC>TCC	p.P515S	EOMES_uc003cdy.3_Missense_Mutation_p.P534S|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.P239S	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	515					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						CACCGCTGGGGAGGGTTGGCC	0.522000													30	90					0	0	0.00058488	0	0
CTDSPL	10217	broad.mit.edu	37	3	38012933	38012933	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:38012933C>T	uc003chg.2	+	6	484	c.462C>T	c.(460-462)TTC>TTT	p.F154F	CTDSPL_uc003chh.2_Silent_p.F143F|CTDSPL_uc003chi.2_RNA	NM_001008392	NP_001008393	O15194	CTDSL_HUMAN	small CTD phosphatase 3 isoform 1	154	FCP1 homology.					nucleus	metal ion binding|phosphoprotein phosphatase activity				0		Melanoma(1037;0.0122)		KIRC - Kidney renal clear cell carcinoma(284;0.0729)|Kidney(284;0.0902)		TGGACGAGTTCCTCCAGAGGA	0.592000													6	18					0	0	0.00116845	0	0
XIRP1	165904	broad.mit.edu	37	3	39226150	39226150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:39226150G>A	uc003cjk.1	-	2	5008	c.4787C>T	c.(4786-4788)CCC>CTC	p.P1596L	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P279L	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1596							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGAGCCACTGGGCCTGGCGCT	0.567000													47	88					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49698188	49698188	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:49698188G>A	uc003cxe.3	+	6	9024	c.8910G>A	c.(8908-8910)AAG>AAA	p.K2970K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2970	Potential.				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGGAGGAGAAGGAGATTGACG	0.602000													4	9					0	0	0.00024832	0	0
TLR9	54106	broad.mit.edu	37	3	52255379	52255379	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:52255379G>A	uc003dda.1	-	2	3587	c.2953C>T	c.(2953-2955)CAG>TAG	p.Q985*	TLR9_uc003ddb.2_Nonsense_Mutation_p.Q1082*	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	985	TIR.|Cytoplasmic (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CAGAGGCGCTGGCGCAGCCGC	0.711000													7	20					0	0	0.00198382	0	0
DNAH1	25981	broad.mit.edu	37	3	52416372	52416372	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:52416372G>A	uc011bef.1	+	50	8103	c.7842G>A	c.(7840-7842)AAG>AAA	p.K2614K	DNAH1_uc003ddv.2_5'Flank	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2614	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AACTATCCAAGAACTACGGCA	0.567000													23	45					0	0	0.00047179	0	0
FOXP1	27086	broad.mit.edu	37	3	71096118	71096118	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:71096118G>A	uc003dol.2	-	6	962	c.639C>T	c.(637-639)GCC>GCT	p.A213A	FOXP1_uc003dom.2_Silent_p.A137A|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.A213A|FOXP1_uc003dop.2_Silent_p.A213A|FOXP1_uc003doq.1_Silent_p.A212A|FOXP1_uc003doi.2_Silent_p.A113A|FOXP1_uc003doj.2_Silent_p.A113A|FOXP1_uc003dok.2_Silent_p.A26A	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	213	Gln-rich.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GAAGGGGAAGGGCAGGCTGCC	0.517000			T	PAX5	ALL								40	81					0	0	0.000781405	0	0
ROBO1	6091	broad.mit.edu	37	3	78663874	78663874	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:78663874G>A	uc003dqe.2	-	28	4567	c.4359C>T	c.(4357-4359)GCC>GCT	p.A1453A	ROBO1_uc003dqb.2_Silent_p.A1414A|ROBO1_uc003dqc.2_Silent_p.A1353A|ROBO1_uc003dqd.2_Silent_p.A1408A|ROBO1_uc010hoh.2_Silent_p.A645A|ROBO1_uc011bgl.1_Silent_p.A1025A	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1453	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TCTGCATTACGGCGGCACTCA	0.488000													6	15					0	0	0.00198382	0	0
TFDP2	7029	broad.mit.edu	37	3	141724290	141724290	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:141724290G>A	uc003eun.3	-	4	558	c.179C>T	c.(178-180)CCC>CTC	p.P60L	TFDP2_uc010hur.2_5'UTR|TFDP2_uc003eul.3_5'UTR|TFDP2_uc011bnf.1_Missense_Mutation_p.P4S|TFDP2_uc011bng.1_Intron|TFDP2_uc003eum.3_5'UTR|TFDP2_uc003euo.2_RNA	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	60					cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						TACCATTTGGGGTCCAACATT	0.303000													4	10					0	0	0.00024832	0	0
SI	6476	broad.mit.edu	37	3	164772993	164772993	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:164772993C>T	uc003fei.2	-	13	1563	c.1501G>A	c.(1501-1503)GGA>AGA	p.G501R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	501	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATCCAAAGTCCATCATATTGC	0.328000										HNSCC(35;0.089)			14	58					0	0	0.00244969	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907791	164907791	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:164907791C>T	uc003fej.3	-	2	1272	c.828G>A	c.(826-828)AGG>AGA	p.R276R	SLITRK3_uc003fek.2_Silent_p.R276R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	276	LRRCT 1.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GTTCTGTCTTCCTGATTTCTC	0.483000										HNSCC(40;0.11)			20	56					0	0	0.00229938	0	0
NCEH1	57552	broad.mit.edu	37	3	172351837	172351837	+	Silent	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:172351837A>G	uc011bpx.1	-	5	913	c.775T>C	c.(775-777)TTA>CTA	p.L259L	NCEH1_uc003fig.2_Silent_p.L251L|NCEH1_uc011bpw.1_Silent_p.L86L|NCEH1_uc011bpy.1_Silent_p.L86L	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	219	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						GGATAAATTAAAGCTTGTAGT	0.363000													11	27					0	0	0.000978159	0	0
HTR3E	285242	broad.mit.edu	37	3	183818418	183818418	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:183818418G>A	uc010hxq.2	+	2	679	c.213G>A	c.(211-213)GCG>GCA	p.A71A	HTR3E_uc003fml.3_Silent_p.A71A|HTR3E_uc003fmm.2_Silent_p.A86A|HTR3E_uc010hxr.2_Silent_p.A86A|HTR3E_uc003fmn.2_Silent_p.A86A	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	71	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TCTCCTTCGCGATGTCTGCCA	0.557000													25	42					0	0	0.001512	0	0
LEPREL1	55214	broad.mit.edu	37	3	189689688	189689688	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:189689688C>T	uc011bsk.1	-	12	2196	c.1808G>A	c.(1807-1809)CGA>CAA	p.R603Q	LEPREL1_uc003fsg.2_Missense_Mutation_p.R422Q	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	603	Fe2OG dioxygenase.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCTATAGTCTCGAAATGTGTA	0.443000													5	26					0	0	0.00198382	0	0
ZDHHC19	131540	broad.mit.edu	37	3	195937576	195937576	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr3:195937576G>A	uc003fwc.2	-	2	293	c.179C>T	c.(178-180)GCC>GTC	p.A60V	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_Intron|ZDHHC19_uc010iab.2_RNA	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	60	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		AACAGGAAAGGCCCACTCCCC	0.577000													5	18					0	0	0.000602214	0	0
KLHL5	51088	broad.mit.edu	37	4	39114659	39114659	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:39114659C>T	uc003gts.2	+	9	1921	c.1846C>T	c.(1846-1848)CGT>TGT	p.R616C	KLHL5_uc003gtp.2_Missense_Mutation_p.R570C|KLHL5_uc003gtq.2_Missense_Mutation_p.R429C|KLHL5_uc003gtr.1_Missense_Mutation_p.R616C|KLHL5_uc003gtt.2_Missense_Mutation_p.R555C	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	616	Kelch 4.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1						AGTTGGTGGTCGTGATGGAAG	0.373000													11	27					0	0	0.00136819	0	0
BEND4	389206	broad.mit.edu	37	4	42127619	42127619	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:42127619G>A	uc003gwn.2	-	4	1707	c.1127C>T	c.(1126-1128)CCA>CTA	p.P376L	BEND4_uc003gwm.2_Missense_Mutation_p.P376L|BEND4_uc011byy.1_Missense_Mutation_p.P376L	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	376											0						CTGGTCAGCTGGCTGTGGTAT	0.443000													8	25					0	0	0.00136819	0	0
KCTD8	386617	broad.mit.edu	37	4	44176894	44176894	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:44176894C>T	uc003gwu.2	-	2	1619	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	445						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						TTTTAAAATCCTGAATACACT	0.383000										HNSCC(17;0.042)			25	95					0	0	0.00047179	0	0
UGT2A1	10941	broad.mit.edu	37	4	70462093	70462093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:70462093C>T	uc003hem.3	-	3	934	c.871G>A	c.(871-873)GAA>AAA	p.E291K	UGT2A1_uc011caq.1_Intron|UGT2A1_uc010ihu.2_Intron|UGT2A1_uc010iht.2_Intron|UGT2A1_uc010ihs.2_Missense_Mutation_p.E292K	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	291	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						ATAAATTCTTCCATTTCCTGC	0.313000													4	20					0	0	0.000602214	0	0
PAQR3	152559	broad.mit.edu	37	4	79845036	79845036	+	Silent	SNP	G	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:79845036G>C	uc003hlp.1	-	5	972	c.768C>G	c.(766-768)TCC>TCG	p.S256S	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_RNA|PAQR3_uc003hlq.1_Silent_p.S138S	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	256	Helical; (Potential).					Golgi membrane|integral to membrane	receptor activity				0						CTGGGACTTTGGAAATGTAGA	0.378000													12	45					0	0	0.000308642	0	0
TACR3	6870	broad.mit.edu	37	4	104640509	104640509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:104640509C>T	uc003hxe.1	-	1	467	c.324G>A	c.(322-324)TGG>TGA	p.W108*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	108	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		CCAGGATGATCCAGATGACGA	0.582000													10	40					0	0	0.000442599	0	0
LEF1	51176	broad.mit.edu	37	4	109088923	109088923	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:109088923T>C	uc003hyt.1	-	1	656	c.1A>G	c.(1-3)ATG>GTG	p.M1V	LEF1_uc011cfj.1_5'Flank|LEF1_uc011cfk.1_5'Flank|LEF1_uc003hyu.1_Missense_Mutation_p.M1V|LEF1_uc003hyv.1_Missense_Mutation_p.M1V|LEF1_uc010imb.1_RNA	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1	1	CTNNB1-binding (By similarity).				canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		AGTTGGGGCATCCCGGCGGCT	0.652000													7	41					0	0	0.00198382	0	0
COL25A1	84570	broad.mit.edu	37	4	110223112	110223112	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:110223112G>A	uc003hze.1	-	2	595	c.64C>T	c.(64-66)CCT>TCT	p.P22S	COL25A1_uc003hzg.2_Missense_Mutation_p.P22S|COL25A1_uc003hzh.1_Missense_Mutation_p.P22S	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	22	Cytoplasmic (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		TGTTCGGCAGGGGTCGGGTCC	0.682000													12	34					0	0	0.00136819	0	0
LRBA	987	broad.mit.edu	37	4	151242429	151242429	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:151242429T>C	uc010ipj.2	-	51	8051	c.7577A>G	c.(7576-7578)AAC>AGC	p.N2526S	LRBA_uc010ipi.2_Missense_Mutation_p.N48S|LRBA_uc003ils.3_Missense_Mutation_p.N421S|LRBA_uc003ilt.3_Missense_Mutation_p.N1174S|LRBA_uc003ilu.3_Missense_Mutation_p.N2515S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2526						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AGGCTGGGTGTTGGCTGCCAC	0.498000													14	50					0	0	0.000308642	0	0
MARCH1	55016	broad.mit.edu	37	4	164450167	164450167	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:164450167C>T	uc003iqs.1	-	8	1580	c.603G>A	c.(601-603)CTG>CTA	p.L201L	MARCH1_uc003iqr.1_Silent_p.L184L	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	201	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTACCACAACCAGTTTTGTCC	0.423000													5	12					0	0	0.00116845	0	0
ANP32C	23520	broad.mit.edu	37	4	165118440	165118440	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:165118440C>T	uc011cjk.1	-	1	424	c.424G>A	c.(424-426)GAC>AAC	p.D142N	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	142											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TAACAGCTGTCGAGATATGTG	0.507000													18	65					0	0	0.00074312	0	0
PALLD	23022	broad.mit.edu	37	4	169604158	169604158	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:169604158G>A	uc011cjx.1	+	5	1375	c.1164G>A	c.(1162-1164)AAG>AAA	p.K388K	PALLD_uc003iru.2_Silent_p.K388K|PALLD_uc003irv.2_Silent_p.K6K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	388					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GAGCTCAAAAGAAAACAACTT	0.348000									Pancreatic_Cancer_Familial_Clustering_of				6	22					0	0	0.00116845	0	0
ODZ3	55714	broad.mit.edu	37	4	183664404	183664404	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:183664404G>A	uc003ivd.1	+	18	3498	c.3461G>A	c.(3460-3462)CGA>CAA	p.R1154Q	ODZ3_uc003ive.1_Missense_Mutation_p.R560Q	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1154	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGCAATGGGCGAAGGCGCAGC	0.522000													7	23					0	0	0.000274275	0	0
FAT1	2195	broad.mit.edu	37	4	187629536	187629536	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:187629536G>A	uc003izf.2	-	2	1634	c.1446C>T	c.(1444-1446)GTC>GTT	p.V482V	FAT1_uc010iso.1_Silent_p.V482V	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	482	Extracellular (Potential).|Cadherin 4.			V -> I (in Ref. 1; CAA60685).	actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TCAGGCTCATGACAGTAGTAC	0.463000										HNSCC(5;0.00058)			22	59					0	0	0.00229938	0	0
TRIML2	205860	broad.mit.edu	37	4	189012605	189012605	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr4:189012605G>A	uc003izl.2	-	7	1122	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	TRIML2_uc003izj.1_Silent_p.I190I|TRIML2_uc003izk.1_Silent_p.I170I|TRIML2_uc011cle.1_Silent_p.I437I	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	362	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CTCCATTTGGGATACAGAGGG	0.458000													19	46					0	0	0.00121646	0	0
SDHAP3	728609	broad.mit.edu	37	5	1593372	1593372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:1593372G>A	uc010itg.1	-	2	165	c.88C>T	c.(88-90)CAG>TAG	p.Q30*	SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA clone IMAGE:40127561.												0						GGCACAATCTGATCCTGGCCA	0.582000													6	41					0	0	0.000157383	0	0
PRDM9	56979	broad.mit.edu	37	5	23527766	23527766	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:23527766G>A	uc003jgo.2	+	11	2751	c.2569G>A	c.(2569-2571)GAG>AAG	p.E857K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	857					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACACAGGGGAGAAGCCCTA	0.592000										HNSCC(3;0.000094)			17	54					0	0	0.000566183	0	0
NUP155	9631	broad.mit.edu	37	5	37294509	37294509	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:37294509G>A	uc003jku.1	-	33	3970	c.3852C>T	c.(3850-3852)TTC>TTT	p.F1284F	NUP155_uc003jkt.1_Silent_p.F1225F|NUP155_uc010iuz.1_Silent_p.F1220F	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1284					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCTGTATTACGAAGCCCACAT	0.328000													10	21					0	0	0.000673444	0	0
FYB	2533	broad.mit.edu	37	5	39202037	39202037	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:39202037C>T	uc003jls.2	-	1	1093	c.1026G>A	c.(1024-1026)CCG>CCA	p.P342P	FYB_uc003jlt.2_Silent_p.P342P|FYB_uc003jlu.2_Silent_p.P342P|FYB_uc011cpl.1_Silent_p.P352P	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	342					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			GCTTCTGTTTCGGGGTGGCTG	0.527000													11	26					0	0	0.000978159	0	0
C7	730	broad.mit.edu	37	5	40958162	40958162	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:40958162G>A	uc003jmh.2	+	11	1402	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	430	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCTGGTAAAGGAAGTACCTTG	0.393000													5	18					0	0	0.000602214	0	0
OCLN	4950	broad.mit.edu	37	5	68849485	68849485	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:68849485G>A	uc003jwu.2	+	9	1992	c.1556G>A	c.(1555-1557)AGA>AAA	p.R519K	OCLN_uc003jwv.3_Missense_Mutation_p.R519K	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GACTATGATAGACAGAAAACA	0.383000													21	60					0	0	0.00047179	0	0
PCSK1	5122	broad.mit.edu	37	5	95734621	95734621	+	Missense_Mutation	SNP	C	T	T	rs149124467		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:95734621C>T	uc003kls.1	-	11	1756	c.1550G>A	c.(1549-1551)CGA>CAA	p.R517Q	PCSK1_uc010jbi.1_Missense_Mutation_p.R207Q	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	517					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTCTCCTCTTCGGGAATATTC	0.343000													6	40					0	0	0.00198382	0	0
MAN2A1	4124	broad.mit.edu	37	5	109178139	109178139	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:109178139T>C	uc003kou.1	+	17	3640	c.2677T>C	c.(2677-2679)TAT>CAT	p.Y893H		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	893	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		AAATAGATTTTATACTGACCT	0.308000													10	20					0	0	0.000673444	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718670	140718670	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:140718670C>T	uc003ljk.1	+	1	317	c.132C>T	c.(130-132)TTC>TTT	p.F44F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.F44F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	44	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGCTCCTTCGTAGGCAACA	0.602000											OREG0016854	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	15					0	0	0.000673444	0	0
PCDH12	51294	broad.mit.edu	37	5	141335152	141335153	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:141335152_141335153GG>AA	uc003llx.2	-	1	3475_3476	c.2264_2265CC>TT	c.(2263-2265)GCC>GTT	p.A755V		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	755	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGGACTCGGCCTCCCGACA	0.579000													6	10					0	0	6.4e-05	0	0
FAM71B	153745	broad.mit.edu	37	5	156589736	156589736	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr5:156589736C>T	uc003lwn.2	-	2	1640	c.1540G>A	c.(1540-1542)GAA>AAA	p.E514K		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	514						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTCCCCAGTTCCTGAGTTGTT	0.498000													125	229					0	0	0.000781405	0	0
SERPINB6	5269	broad.mit.edu	37	6	2953382	2953382	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:2953382G>A	uc003muk.2	-	4	2464	c.469C>T	c.(469-471)CCA>TCA	p.P157S	SERPINB6_uc003mui.2_Missense_Mutation_p.P40S|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Missense_Mutation_p.P157S|SERPINB6_uc003mum.2_Missense_Mutation_p.P157S|SERPINB6_uc003mun.2_Missense_Mutation_p.P157S|SERPINB6_uc003muo.2_Missense_Mutation_p.P157S	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	157					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	CTTGTCAATGGATCCACTGAG	0.507000											OREG0017145	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	161					0	0	0.000781405	0	0
CAP2	10486	broad.mit.edu	37	6	17507930	17507930	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:17507930A>G	uc003ncb.2	+	6	746	c.503A>G	c.(502-504)AAC>AGC	p.N168S	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.N142S|CAP2_uc011djb.1_Intron|CAP2_uc011djc.1_Intron|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	168					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TTTTACACTAACAGGGTCTTA	0.418000													24	50					0	0	0.000720815	0	0
OR2B3	442184	broad.mit.edu	37	6	29054925	29054925	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:29054925G>A	uc003nlx.2	-	1	166	c.101C>T	c.(100-102)TCA>TTA	p.S34L		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GATTGTGTATGATATTAACAG	0.408000													14	37					0	0	0.00244969	0	0
DHX16	8449	broad.mit.edu	37	6	30630409	30630409	+	Silent	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:30630409A>G	uc003nqz.2	-	9	1751	c.1539T>C	c.(1537-1539)AGT>AGC	p.S513S	DHX16_uc003nqy.2_5'Flank|DHX16_uc011dmo.1_Silent_p.S453S	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	513	Helicase ATP-binding.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						GATACCTGTAACTCGCCAGGT	0.517000													11	16					0	0	0.00244969	0	0
TAP2	6891	broad.mit.edu	37	6	32798514	32798515	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:32798514_32798515CC>TT	uc003occ.2	-	7	1372_1373	c.1341_1342GG>AA	c.(1339-1344)ATGGAC>ATAAAC	p.447_448MD>IN	TAP2_uc011dqf.1_Missense_Mutation_p.447_448MD>IN|TAP2_uc003ocb.1_Missense_Mutation_p.447_448MD>IN|TAP2_uc003ocd.2_Missense_Mutation_p.447_448MD>IN	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	447_448	Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						GGCTGTCGGTCCATGTAGGAGA	0.530000													5	22					0	0	6.4e-05	0	0
IP6K3	117283	broad.mit.edu	37	6	33690841	33690842	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:33690841_33690842CC>TT	uc010jvf.2	-	7	1424_1425	c.888_889GG>AA	c.(886-891)AGGGAG>AGAAAG	p.E297K	IP6K3_uc003ofb.2_Missense_Mutation_p.E297K	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	297					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						TCCAGGAGCTCCCTCCGGAGGT	0.520000													8	29					0	0	6.4e-05	0	0
ANKS1A	23294	broad.mit.edu	37	6	34962099	34962099	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:34962099G>A	uc003ojx.3	+	10	1465	c.1323G>A	c.(1321-1323)AGG>AGA	p.R441R	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	441						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						TGAGACCTAGGATTCATGGGA	0.448000													14	33					0	0	0.00185496	0	0
KIAA0240	23506	broad.mit.edu	37	6	42819858	42819858	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:42819858C>T	uc003osn.1	+	7	2019	c.1868C>T	c.(1867-1869)TCC>TTC	p.S623F	KIAA0240_uc003osm.1_Missense_Mutation_p.S623F|KIAA0240_uc011duw.1_Missense_Mutation_p.S623F|KIAA0240_uc003osp.1_Missense_Mutation_p.S623F	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	623										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			AATCAGACTTCCCCCATTTCT	0.438000													10	30					0	0	0.000673444	0	0
GSTA5	221357	broad.mit.edu	37	6	52697667	52697667	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:52697667G>A	uc003pba.1	-	6	606	c.536C>T	c.(535-537)CCT>CTT	p.P179L		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	179	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	CTTCAGCAGAGGGAAGCTGGA	0.517000													12	48					0	0	0.00185496	0	0
BAI3	577	broad.mit.edu	37	6	70092803	70092803	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:70092803G>A	uc003pev.3	+	31	4804	c.4356G>A	c.(4354-4356)CGG>CGA	p.R1452R	BAI3_uc010kak.2_Silent_p.R1452R|BAI3_uc011dxx.1_Silent_p.R658R	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1452	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACAGATTTCGGGATATACCAA	0.378000													6	14					0	0	0.00198382	0	0
DSE	29940	broad.mit.edu	37	6	116752203	116752203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:116752203G>A	uc003pws.2	+	4	951	c.757G>A	c.(757-759)GGC>AGC	p.G253S	DSE_uc011ebg.1_Missense_Mutation_p.G272S|DSE_uc003pwt.2_Missense_Mutation_p.G253S|DSE_uc003pwu.2_5'Flank	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	253					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GGTGACGGATGGCTCCCTCTA	0.463000													20	27					0	0	0.00229938	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599888	136599888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:136599888G>A	uc003qgx.1	-	4	384	c.131C>T	c.(130-132)TCA>TTA	p.S44L	BCLAF1_uc003qgw.1_Missense_Mutation_p.S44L|BCLAF1_uc003qgy.1_Missense_Mutation_p.S42L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.S42L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	44					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		ACGAGACCTTGAATATGTTCT	0.358000													4	26					0	0	0.000602214	0	0
KIAA1244	57221	broad.mit.edu	37	6	138655193	138655193	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr6:138655193T>A	uc003qhu.2	+	33	5210	c.5210T>A	c.(5209-5211)GTC>GAC	p.V1737D		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1737					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GAAGAGTTTGTCAAAGGCCCC	0.463000													12	20					0	0	0.00136819	0	0
IKZF1	10320	broad.mit.edu	37	7	50455127	50455128	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:50455127_50455128AC>TT	uc003tow.3	+	7	842_843	c.674_675AC>TT	c.(673-675)AAC>ATT	p.N225I	IKZF1_uc003tox.3_Intron|IKZF1_uc003toy.3_Intron|IKZF1_uc011kck.1_Missense_Mutation_p.N138I|IKZF1_uc003toz.3_Missense_Mutation_p.N195I|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	225					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CGCTGCCACAACTACTTGGAAA	0.545000			D		ALL								6	9					0	0	6.4e-05	0	0
COBL	23242	broad.mit.edu	37	7	51111163	51111163	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:51111163G>A	uc003tpr.3	-	8	1508	c.1323C>T	c.(1321-1323)GAC>GAT	p.D441D	COBL_uc003tps.2_Silent_p.D498D|COBL_uc011kcl.1_Silent_p.D441D|COBL_uc010kzc.2_Silent_p.D441D|COBL_uc003tpp.3_Silent_p.D227D|COBL_uc003tpq.3_Silent_p.D382D	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	441										skin(3)|ovary(2)	5	Glioma(55;0.08)					CGAGGTCCTGGTCACTGCAGT	0.562000													16	36					0	0	0.000422831	0	0
LANCL2	55915	broad.mit.edu	37	7	55468953	55468953	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:55468953C>T	uc003tqp.2	+	5	1343	c.765C>T	c.(763-765)CAC>CAT	p.H255H		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	255					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			ACCAGTGGCACCGGAAGCAGT	0.438000													15	28					0	0	0.000422831	0	0
ZNF479	90827	broad.mit.edu	37	7	57187738	57187738	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:57187738C>T	uc010kzo.2	-	5	1655	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	462					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TAGGGTCTCTCTCCAGTATGA	0.423000													10	51					0	0	0.000978159	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73932550	73932550	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:73932550G>A	uc003uaq.2	+	5	896	c.503G>A	c.(502-504)GGG>GAG	p.G168E	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.G200E|GTF2IRD1_uc003uap.2_Missense_Mutation_p.G168E|GTF2IRD1_uc003uar.1_Missense_Mutation_p.G168E	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	168	GTF2I-like 1.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GCCGTGCAGGGGCTGCCCGAA	0.667000													5	15					0	0	0.000602214	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73933934	73933934	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:73933934C>T	uc003uaq.2	+	6	1194	c.801C>T	c.(799-801)ATC>ATT	p.I267I	GTF2IRD1_uc010lbq.2_Silent_p.I299I|GTF2IRD1_uc003uap.2_Silent_p.I267I|GTF2IRD1_uc003uar.1_Silent_p.I267I	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	267						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						ACCACGCCATCCGAGAGCTCA	0.692000													9	24					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82579500	82579500	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:82579500C>T	uc003uhx.2	-	6	10693	c.10404G>A	c.(10402-10404)GTG>GTA	p.V3468V	PCLO_uc003uhv.2_Silent_p.V3468V|PCLO_uc010lec.2_Silent_p.V433V	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3399					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CGCTTGTATCCACACTCTTTT	0.438000													8	28					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82784478	82784478	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:82784478C>T	uc003uhx.2	-	2	1768	c.1479G>A	c.(1477-1479)CAG>CAA	p.Q493Q	PCLO_uc003uhv.2_Silent_p.Q493Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGAGCCAGGCTGTTGAGGTG	0.617000													30	88					0	0	0.00209593	0	0
C7orf64	84060	broad.mit.edu	37	7	92163784	92163784	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:92163784C>T	uc003ulz.2	+	4	558	c.517C>T	c.(517-519)CAC>TAC	p.H173Y	C7orf64_uc011khu.1_3'UTR|C7orf64_uc003uma.2_Missense_Mutation_p.H173Y	NM_032120	NP_115496	Q5RL73	CG064_HUMAN	hypothetical protein LOC84060	173							nucleotide binding			ovary(2)	2						ACAAGACTTCCACTCAGAGAT	0.358000													10	22					0	0	0.000442599	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762117	92762117	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:92762117G>A	uc003umh.1	-	5	4384	c.3168C>T	c.(3166-3168)TCC>TCT	p.S1056S	SAMD9L_uc003umj.1_Silent_p.S1056S|SAMD9L_uc003umi.1_Silent_p.S1056S|SAMD9L_uc010lfb.1_Silent_p.S1056S|SAMD9L_uc003umk.1_Silent_p.S1056S|SAMD9L_uc010lfc.1_Silent_p.S1056S|SAMD9L_uc010lfd.1_Silent_p.S1056S|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1056										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CCATTAATGGGGAAAACAGAG	0.388000													20	44					0	0	0.000958276	0	0
TFPI2	7980	broad.mit.edu	37	7	93516148	93516148	+	Missense_Mutation	SNP	C	T	T	rs12669450		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:93516148C>T	uc003umy.1	-	5	767	c.692G>A	c.(691-693)CGG>CAG	p.R231Q	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_3'UTR|TFPI2_uc003una.1_Missense_Mutation_p.R220Q|TFPI2_uc003unb.1_Missense_Mutation_p.R237Q|TFPI2_uc010lfg.1_Missense_Mutation_p.R107Q	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor	231					blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			TTGCTTCTTCCGAATTTTCCG	0.328000													25	70					0	0	0.00106085	0	0
C7orf51	222950	broad.mit.edu	37	7	100086079	100086079	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:100086079C>T	uc003uvd.1	+	4	894	c.735C>T	c.(733-735)ACC>ACT	p.T245T	C7orf51_uc003uve.1_Silent_p.T27T	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	245										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGGGCCCGACCCCTCCAGCGG	0.642000													9	31					0	0	0.000442599	0	0
MUC17	140453	broad.mit.edu	37	7	100685895	100685895	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:100685895C>T	uc003uxp.1	+	3	11251	c.11198C>T	c.(11197-11199)TCA>TTA	p.S3733L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3733	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCATTTCATCTTCTGCA	0.507000													42	84					0	0	0.000680045	0	0
LAMB4	22798	broad.mit.edu	37	7	107707021	107707021	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:107707021G>A	uc010ljo.1	-	20	2555	c.2471C>T	c.(2470-2472)TCA>TTA	p.S824L	LAMB4_uc003vey.2_Missense_Mutation_p.S824L|LAMB4_uc010ljp.1_5'Flank	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	824	Laminin EGF-like 7.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AGTGTCCTTTGATCCTTGAGG	0.532000													6	9					0	0	0.00116845	0	0
POT1	25913	broad.mit.edu	37	7	124503687	124503687	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:124503687A>G	uc003vlm.2	-	8	864	c.263T>C	c.(262-264)GTA>GCA	p.V88A	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_5'UTR|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	88					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						CTTTTTATATACTTGAATCTA	0.398000													12	32					0	0	0.000308642	0	0
TSGA13	114960	broad.mit.edu	37	7	130357671	130357672	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:130357671_130357672GG>TT	uc003vqi.2	-	6	889_890	c.432_433CC>AA	c.(430-435)CCCCGC>CCAAGC	p.R145S	TSGA13_uc003vqj.2_Missense_Mutation_p.R145S	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	145										ovary(2)	2	Melanoma(18;0.0435)					TGAGGCATGCGGGGCAGCCAGA	0.470000													9	470					0	0	6.4e-05	0	0
JHDM1D	80853	broad.mit.edu	37	7	139824437	139824437	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:139824437G>A	uc003vvm.2	-	7	1039	c.1035C>T	c.(1033-1035)ACC>ACT	p.T345T		NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	345	JmjC.				midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					GAACAAATAAGGTATGTCCCT	0.413000													11	14					0	0	0.00136819	0	0
KEL	3792	broad.mit.edu	37	7	142649676	142649676	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:142649676G>A	uc003wcb.2	-	10	1333	c.1123C>T	c.(1123-1125)CCA>TCA	p.P375S		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	375	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCCAGGGCTGGAGAAAGGGTC	0.552000													9	24					0	0	0.000274275	0	0
ZNF777	27153	broad.mit.edu	37	7	149128998	149128998	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:149128998G>A	uc003wfv.2	-	6	2528	c.2365C>T	c.(2365-2367)CAG>TAG	p.Q789*		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	Error:Variant_position_missing_in_Q9ULD5_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGATGCTTCTGCGTGAAGCGC	0.667000													9	19					0	0	0.000274275	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926476	157926476	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr7:157926476C>T	uc003wno.2	-	9	1570	c.1449G>A	c.(1447-1449)GAG>GAA	p.E483E	PTPRN2_uc003wnp.2_Silent_p.E466E|PTPRN2_uc003wnq.2_Silent_p.E483E|PTPRN2_uc003wnr.2_Silent_p.E445E|PTPRN2_uc011kwa.1_Silent_p.E506E	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	483	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGCTCTGCTCCTCCTTCGAGG	0.647000													16	23					0	0	0.000566183	0	0
SGCZ	137868	broad.mit.edu	37	8	13959988	13959988	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:13959988G>A	uc003wwq.2	-	7	1301	c.641C>T	c.(640-642)TCC>TTC	p.S214F	SGCZ_uc010lss.2_Missense_Mutation_p.S167F	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	201	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CATGATCAAGGATCTGGTGGG	0.413000													8	14					0	0	0.000157383	0	0
PSD3	23362	broad.mit.edu	37	8	18729517	18729517	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:18729517C>T	uc003wza.2	-	3	960	c.857G>A	c.(856-858)CGA>CAA	p.R286Q		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	286					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		GGAGCTGCTTCGATCACATCC	0.562000													14	46					0	0	0.00244969	0	0
LOXL2	4017	broad.mit.edu	37	8	23185951	23185951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:23185951C>T	uc003xdh.1	-	6	1433	c.1094G>A	c.(1093-1095)AGA>AAA	p.R365K		NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	365	SRCR 3.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		GCCCAGCTCTCTGCAGACCAC	0.627000													15	21					0	0	0.000308642	0	0
ADAM7	8756	broad.mit.edu	37	8	24333986	24333986	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:24333986G>A	uc003xeb.2	+	8	787	c.674G>A	c.(673-675)CGA>CAA	p.R225Q	ADAM7_uc003xec.2_5'UTR	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	225	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTAAGGAACCGAATTTGGGGA	0.323000													16	24					0	0	0.00121646	0	0
KCNB2	9312	broad.mit.edu	37	8	73849489	73849489	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:73849489C>T	uc003xzb.2	+	3	2487	c.1899C>T	c.(1897-1899)TTC>TTT	p.F633F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	633	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGATGAAGTTCCCAACCGACC	0.607000													17	55					0	0	0.00074312	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885814	88885814	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:88885814G>A	uc003ydz.2	-	1	483	c.386C>T	c.(385-387)TCT>TTT	p.S129F		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	129										ovary(1)	1						CCAGCACATAGAATTCACCTT	0.572000													12	26					0	0	0.000308642	0	0
DECR1	1666	broad.mit.edu	37	8	91031344	91031345	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:91031344_91031345CC>TT	uc003yek.1	+	4	502_503	c.361_362CC>TT	c.(361-363)CCT>TTT	p.P121F	DECR1_uc011lgc.1_Missense_Mutation_p.P112F|DECR1_uc011lgd.1_RNA	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	121					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TGTGAGGGATCCTGATATGGTT	0.366000													9	31					0	0	6.4e-05	0	0
RIMS2	9699	broad.mit.edu	37	8	105160846	105160846	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:105160846C>T	uc003yls.2	+	23	3399	c.3158C>T	c.(3157-3159)TCC>TTC	p.S1053F	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.S1042F|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GTCTTTACATCCAAAATGCAA	0.393000										HNSCC(12;0.0054)			4	10					0	0	0.00024832	0	0
CSMD3	114788	broad.mit.edu	37	8	114111080	114111080	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:114111080C>T	uc003ynu.2	-	5	981	c.822G>A	c.(820-822)GAG>GAA	p.E274E	CSMD3_uc003ynt.2_Silent_p.E234E|CSMD3_uc011lhx.1_Silent_p.E274E|CSMD3_uc010mcx.1_Silent_p.E274E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	274	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGTCCCCAGGCTCTGCTACAA	0.408000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	23					0	0	0.000157383	0	0
PLEC	5339	broad.mit.edu	37	8	144995445	144995445	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr8:144995445G>A	uc003zaf.1	-	32	9125	c.8955C>T	c.(8953-8955)GAC>GAT	p.D2985D	PLEC_uc003zab.1_Silent_p.D2848D|PLEC_uc003zac.1_Silent_p.D2852D|PLEC_uc003zad.2_Silent_p.D2848D|PLEC_uc003zae.1_Silent_p.D2816D|PLEC_uc003zag.1_Silent_p.D2826D|PLEC_uc003zah.2_Silent_p.D2834D|PLEC_uc003zaj.2_Silent_p.D2875D	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2985	Globular 2.|Plectin 5.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCTTGGTGTCGTCGCTGGGGT	0.662000													17	71					0	0	0.000566183	0	0
PTPRD	5789	broad.mit.edu	37	9	8528596	8528596	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:8528596C>T	uc003zkk.2	-	14	1247	c.536G>A	c.(535-537)CGA>CAA	p.R179Q	PTPRD_uc003zkp.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkq.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkr.2_Missense_Mutation_p.R179Q|PTPRD_uc003zks.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkl.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkn.2_Missense_Mutation_p.R179Q|PTPRD_uc003zko.2_Missense_Mutation_p.R179Q|PTPRD_uc003zkt.1_Missense_Mutation_p.R179Q	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	179	Extracellular (Potential).|Ig-like C2-type 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CCTACCTGATCGTAACTGCTT	0.299000										TSP Lung(15;0.13)			20	31					0	0	0.000586117	0	0
FREM1	158326	broad.mit.edu	37	9	14851345	14851345	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:14851345G>A	uc003zlm.2	-	6	1679	c.1089C>T	c.(1087-1089)CTC>CTT	p.L363L	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	363	CSPG 1.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GCATGTCACTGAGATCTTTCC	0.493000													12	20					0	0	0.00185496	0	0
FAM75A6	389730	broad.mit.edu	37	9	43630635	43630635	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:43630635G>A	uc011lrb.1	-	1	96	c.67C>T	c.(67-69)CCA>TCA	p.P23S		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	23	Helical; (Potential).					integral to membrane					0						AACACCCATGGTGTGGAGCTG	0.473000													24	28					0	0	0.000720815	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321336	79321336	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:79321336C>T	uc010mpk.2	-	8	5978	c.5854G>A	c.(5854-5856)GAA>AAA	p.E1952K	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1952					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GTAGGTGTTTCAGGAGTCAGC	0.463000													25	35					0	0	0.00278032	0	0
ROR2	4920	broad.mit.edu	37	9	94487360	94487360	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:94487360C>T	uc004arj.1	-	9	1615	c.1416G>A	c.(1414-1416)GCG>GCA	p.A472A	ROR2_uc004ari.1_Silent_p.A332A	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	472	Cytoplasmic (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TGAACCTCACCGCAGACAGGC	0.597000													52	116					0	0	0.000781405	0	0
RAD23B	5887	broad.mit.edu	37	9	110086177	110086177	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:110086177C>T	uc004bde.2	+	8	1191	c.824C>T	c.(823-825)CCC>CTC	p.P275L	RAD23B_uc011lwa.1_Missense_Mutation_p.P275L|RAD23B_uc011lwb.1_Missense_Mutation_p.P254L	NM_002874	NP_002865	P54727	RD23B_HUMAN	UV excision repair protein RAD23 homolog B	275	STI1.				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleoplasm|proteasome complex|XPC complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			ovary(1)	1						TTAGGACATCCCCTTGAATTT	0.353000								Direct_reversal_of_damage|NER					15	29					0	0	0.000422831	0	0
MUSK	4593	broad.mit.edu	37	9	113445027	113445027	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:113445027G>A	uc004bey.2	+	2	251	c.153G>A	c.(151-153)GTG>GTA	p.V51V	MUSK_uc004bex.2_Silent_p.V51V	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	51	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TGTGTGCAGTGGAATCCTACC	0.353000													18	28					0	0	0.00152264	0	0
MUSK	4593	broad.mit.edu	37	9	113563219	113563219	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:113563219G>A	uc004bey.2	+	14	2659	c.2561G>A	c.(2560-2562)CGA>CAA	p.R854Q	MUSK_uc004bez.1_Missense_Mutation_p.R434Q	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	854	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						AGTATTCACCGAATTCTGGAA	0.507000													6	12					0	0	0.000274275	0	0
AMBP	259	broad.mit.edu	37	9	116835233	116835233	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:116835233C>T	uc004bie.3	-	5	791	c.528G>A	c.(526-528)GAG>GAA	p.E176E	AMBP_uc011lxk.1_Silent_p.E117E|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	176					cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	AGATGGAGTCCTCAGGGATGC	0.627000													4	7					0	0	0.00116845	0	0
ASTN2	23245	broad.mit.edu	37	9	119625945	119625945	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:119625945G>A	uc004bjs.1	-	11	2058	c.1957C>T	c.(1957-1959)CGT>TGT	p.R653C	ASTN2_uc004bjr.1_Missense_Mutation_p.R649C|ASTN2_uc004bjt.1_Missense_Mutation_p.R602C	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	653	Extracellular (Potential).|EGF-like 2.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GAGCAGTCACGAACTGGCCCG	0.542000													10	20					0	0	0.000442599	0	0
TLR4	7099	broad.mit.edu	37	9	120475214	120475214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:120475214G>A	uc004bjz.2	+	3	1099	c.808G>A	c.(808-810)GAA>AAA	p.E270K	TLR4_uc004bka.2_Missense_Mutation_p.E230K|TLR4_uc004bkb.2_Missense_Mutation_p.E70K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	270	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGGAAACTTGGAAAAGTTTGA	0.358000													34	60					0	0	0.000814825	0	0
DBC1	1620	broad.mit.edu	37	9	121929767	121929767	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:121929767G>A	uc004bkc.2	-	8	2337	c.1881C>T	c.(1879-1881)ACC>ACT	p.T627T		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	627					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TTCGCAGTAGGGTAGGTAGCC	0.532000													27	70					0	0	0.00106085	0	0
OR1J2	26740	broad.mit.edu	37	9	125273977	125273977	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:125273977G>A	uc004bmj.1	+	4	1752	c.897G>A	c.(895-897)GAG>GAA	p.E299E	OR1J2_uc011lyv.1_Silent_p.E299E	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						ACATGAAAGAGGCCCTTGGGA	0.398000													12	48					0	0	0.00136819	0	0
OR1L4	254973	broad.mit.edu	37	9	125486790	125486790	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:125486790C>T	uc004bmu.1	+	1	522	c.522C>T	c.(520-522)ATC>ATT	p.I174I		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTCTCACATCATTAAGCACT	0.498000													26	130					0	0	0.00195071	0	0
DENND1A	57706	broad.mit.edu	37	9	126319882	126319882	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:126319882G>A	uc004bnz.1	-	13	1193	c.960C>T	c.(958-960)TTC>TTT	p.F320F	DENND1A_uc011lzl.1_Intron|DENND1A_uc004bny.1_Silent_p.F137F|DENND1A_uc011lzm.1_Silent_p.F288F|DENND1A_uc004boa.1_Silent_p.F320F|DENND1A_uc004bob.1_Silent_p.F290F|DENND1A_uc004boc.2_Silent_p.F288F	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	320	dDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						GGTAGCTACCGAAGAAAGCAG	0.552000													7	13					0	0	0.00198382	0	0
GAPVD1	26130	broad.mit.edu	37	9	128099780	128099780	+	Silent	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:128099780C>T	uc010mwx.2	+	17	3113	c.2787C>T	c.(2785-2787)CTC>CTT	p.L929L	GAPVD1_uc011lzs.1_Silent_p.L929L|GAPVD1_uc004bpp.2_Silent_p.L956L|GAPVD1_uc004bpq.2_Silent_p.L929L|GAPVD1_uc004bpr.2_Silent_p.L908L|GAPVD1_uc004bps.2_Silent_p.L929L|GAPVD1_uc010mwy.1_Silent_p.L762L	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	929					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGCGAGAACTCCCTCCAGCTG	0.532000													16	29					0	0	0.000308642	0	0
FIBCD1	84929	broad.mit.edu	37	9	133780666	133780666	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:133780666C>T	uc004bzz.2	-	6	1326	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	FIBCD1_uc011mcc.1_Missense_Mutation_p.E361K	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	361	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		TACCCGTCTTCCTCAGGGTCC	0.652000													4	19					0	0	0.00024832	0	0
REXO4	57109	broad.mit.edu	37	9	136277596	136277596	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:136277596C>A	uc004cdm.2	-	4	933	c.733G>T	c.(733-735)GCC>TCC	p.A245S	ADAMTS13_uc004cdp.3_5'Flank|REXO4_uc011mde.1_Missense_Mutation_p.A108S|REXO4_uc011mdf.1_Missense_Mutation_p.A108S|REXO4_uc004cdn.2_5'UTR|REXO4_uc004cdo.2_Intron	NM_020385	NP_065118	Q9GZR2	REXO4_HUMAN	XPMC2 prevents mitotic catastrophe 2 homolog	245	Exonuclease.					nucleolus	exonuclease activity|nucleic acid binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.58e-08)|Epithelial(140;9.55e-07)|all cancers(34;1.05e-05)		CAGTCCAAGGCTAAGGCTCTT	0.562000													21	66					1.64113e-05	7.41756e-05	0.00152264	1	0
SARDH	1757	broad.mit.edu	37	9	136536688	136536688	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:136536688G>A	uc004cep.3	-	18	2429	c.2295C>T	c.(2293-2295)TAC>TAT	p.Y765Y	SARDH_uc004ceo.2_Silent_p.Y765Y|SARDH_uc011mdn.1_Silent_p.Y765Y|SARDH_uc011mdo.1_Silent_p.Y597Y|SARDH_uc004cen.2_Silent_p.Y193Y	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	765					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CGATGGCGCGGTACCCTGCGT	0.672000													4	8					0	0	0.000602214	0	0
SEC16A	9919	broad.mit.edu	37	9	139370595	139370595	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:139370595G>A	uc004chx.2	-	3	1782	c.1473C>T	c.(1471-1473)CCC>CCT	p.P491P	SEC16A_uc004chv.3_Silent_p.P118P|SEC16A_uc004chw.2_Silent_p.P491P|SEC16A_uc010nbn.2_Silent_p.P491P|SEC16A_uc010nbo.1_Silent_p.P491P	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	313					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GCCCAGGAAGGGGCCCATATC	0.552000													11	13					0	0	0.000673444	0	0
CACNA1B	774	broad.mit.edu	37	9	141016151	141016151	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:141016151G>A	uc004cog.2	+	46	6865	c.6720G>A	c.(6718-6720)CAG>CAA	p.Q2240Q	CACNA1B_uc004coi.2_Silent_p.Q1452Q	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2240	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCCTGCTGCAGAGAGACCCCC	0.672000													9	36					0	0	0.00136819	0	0
ARSF	416	broad.mit.edu	37	X	3021865	3021865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:3021865G>A	uc004cre.1	+	9	1386	c.1165G>A	c.(1165-1167)GGA>AGA	p.G389R	ARSF_uc004crf.1_Missense_Mutation_p.G389R	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	389						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCGATGGCCTGGAAAGGTACC	0.478000													25	7					0	0	0.00278032	0	0
GLRA2	2742	broad.mit.edu	37	X	14625275	14625275	+	Silent	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:14625275G>A	uc010nep.2	+	7	932	c.600G>A	c.(598-600)CTG>CTA	p.L200L	GLRA2_uc010neq.2_Silent_p.L200L|GLRA2_uc004cwe.3_Silent_p.L200L|GLRA2_uc011mio.1_Silent_p.L111L|GLRA2_uc011mip.1_Silent_p.L178L	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	200	Extracellular (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	TGAATGACCTGATATTTGAGT	0.393000													20	20					0	0	0.00152264	0	0
CLCN5	1184	broad.mit.edu	37	X	49846336	49846336	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:49846336T>A	uc004dos.1	+	6	803	c.555T>A	c.(553-555)TAT>TAA	p.Y185*	CLCN5_uc004dor.1_Nonsense_Mutation_p.Y255*|CLCN5_uc004doq.1_Nonsense_Mutation_p.Y255*|CLCN5_uc004dot.1_Nonsense_Mutation_p.Y185*	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	185					excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TTAGGGGCTATTTGGGTAAGT	0.448000													13	24					0	0	0.000308642	0	0
PFKFB1	5207	broad.mit.edu	37	X	54985314	54985314	+	Silent	SNP	G	A	A	rs144960587		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:54985314G>A	uc004dty.1	-	5	500	c.429C>T	c.(427-429)ATC>ATT	p.I143I	PFKFB1_uc010nkd.1_Silent_p.I129I|PFKFB1_uc011mol.1_Silent_p.I78I	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	143	6-phosphofructo-2-kinase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						CAAACTGCAGGATCAGTGACC	0.448000													32	31					0	0	0.00111076	0	0
Unknown	0	broad.mit.edu	37	X	80185634	80185634	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:80185634G>A	uc004eec.1	+	1	707	c.533G>A	c.(532-534)GGA>GAA	p.G178E						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		TGGACAGCAGGAAACAGTAAC	0.493000													21	23					0	0	0.00152264	0	0
SYTL4	94121	broad.mit.edu	37	X	99956964	99956964	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:99956964G>A	uc004egd.3	-	4	426	c.70C>T	c.(70-72)CGA>TGA	p.R24*	SYTL4_uc010nnc.2_Nonsense_Mutation_p.R24*|SYTL4_uc004ege.3_Nonsense_Mutation_p.R24*|SYTL4_uc004egf.3_Nonsense_Mutation_p.R24*|SYTL4_uc004egg.3_Nonsense_Mutation_p.R24*	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	24	RabBD.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTTCATCTCGCTGTAGAACA	0.438000													5	7					0	0	0.000157383	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106096799	106096799	+	Silent	SNP	T	G	G			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:106096799T>G	uc004emo.2	+	13	2337	c.2172T>G	c.(2170-2172)GTT>GTG	p.V724V	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	724						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTTCAAATGTTCAGCAAGGTT	0.323000													25	21					0	0	0.000586117	0	0
GPR112	139378	broad.mit.edu	37	X	135426620	135426620	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:135426620C>T	uc004ezu.1	+	6	1046	c.755C>T	c.(754-756)CCA>CTA	p.P252L	GPR112_uc010nsb.1_Missense_Mutation_p.P47L|GPR112_uc010nsc.1_Missense_Mutation_p.P19L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	252	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATGACCACTCCATCCCAAATT	0.323000													12	8					0	0	0.00244969	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995273	140995273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chrX:140995273C>T	uc004fbt.2	+	4	2369	c.2083C>T	c.(2083-2085)CCT>TCT	p.P695S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	695							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAAATTCCTCAGAGTCC	0.562000										HNSCC(15;0.026)			21	17					0	0	0.00229938	0	0
POLR3E	55718	broad.mit.edu	37	16	22335828	22335835	+	Frame_Shift_Del	DEL	GCGCCGAG	-	-	rs141897679		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr16:22335828_22335835delGCGCCGAG	uc002dkk.2	+	16	1289_1296	c.1133_1140delGCGCCGAG	c.(1132-1140)TGCGCCGAGfs	p.C378fs	POLR3E_uc002dkj.1_Frame_Shift_Del_p.C378fs|POLR3E_uc002dkm.2_Frame_Shift_Del_p.C342fs|POLR3E_uc010vbr.1_Frame_Shift_Del_p.C378fs|POLR3E_uc002dkl.2_Frame_Shift_Del_p.C378fs|POLR3E_uc010vbs.1_Frame_Shift_Del_p.C342fs|POLR3E_uc010vbt.1_Frame_Shift_Del_p.C322fs	NM_018119	NP_060589	Q9NVU0	RPC5_HUMAN	RNA polymerase III polypeptide E	378_380					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.012)		CTCCAGCTCTGCGCCGAGGATGTGAAGG	0.606													15	69	---	---	---	---					
ATF5	22809	broad.mit.edu	37	19	50434266	50434266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr19:50434266delG	uc010enq.1	+	3	726	c.159delG	c.(157-159)GTGfs	p.V53fs	IL4I1_uc002pqv.1_5'Flank|IL4I1_uc010eno.1_5'Flank|IL4I1_uc002pqw.1_5'Flank|IL4I1_uc002pqu.1_5'Flank|NUP62_uc002pqx.2_5'Flank|NUP62_uc002pqy.2_5'Flank|NUP62_uc002pqz.2_5'Flank|NUP62_uc002pra.2_5'Flank|NUP62_uc002prb.2_5'Flank|NUP62_uc002prc.2_5'Flank|ATF5_uc002prd.2_Frame_Shift_Del_p.V53fs	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	53					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		GGCTTCCAGTGGGGGGAGAGC	0.627													2	4	---	---	---	---					
MN1	4330	broad.mit.edu	37	22	28194933	28194934	+	In_Frame_Ins	INS	-	TGC	TGC	rs34890218		TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr22:28194933_28194934insTGC	uc003adj.2	-	1	2553_2554	c.1598_1599insGCA	c.(1597-1599)CAA>CAGCAA	p.533_533Q>QQ		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	533	Poly-Gln.						binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						gctgctgctgttgctgctgctg	0.391			T	ETV6	AML|meningioma								4	9	---	---	---	---					
COL27A1	85301	broad.mit.edu	37	9	117052502	117052502	+	Splice_Site	DEL	A	-	-			TCGA-ER-A195-06A-11D-A196-08	TCGA-ER-A195-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f052e039-d613-4cc1-8579-54e6e4572fa4	673c4ef5-9d73-4870-823e-85ef1045b823	g.chr9:117052502delA	uc011lxl.1	+	47	4261	c.4261_splice	c.e47-2	p.G1421_splice	COL27A1_uc004bii.2_Splice_Site	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor						cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						TGTACCCCCCAGGGCCTGCAG	0.687													2	4	---	---	---	---					
