Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRKCZ	5590	broad.mit.edu	37	1	2103567	2103567	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:2103567C>T	uc001aiq.2	+	12	1296	c.1135C>T	c.(1135-1137)CTG>TTG	p.L379L	PRKCZ_uc001air.2_Silent_p.L196L|PRKCZ_uc010nyw.1_Silent_p.L275L|PRKCZ_uc001ais.2_Silent_p.L196L|PRKCZ_uc009vla.2_Silent_p.L203L|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc001ait.2_Silent_p.L227L	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	379	Protein kinase.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		GGACCTGAAGCTGGACAACGT	0.627													12	18					0	0	0.000978159	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938476	2938476	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:2938476G>A	uc001ajz.2	+	1	431	c.226G>A	c.(226-228)GAG>AAG	p.E76K		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	76						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CTCCCCTTTCGAGCGTGGCCT	0.602													18	29					0	0	0.000958276	0	0
C1orf127	148345	broad.mit.edu	37	1	11015072	11015072	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:11015072G>A	uc010oao.1	-	5	508	c.503C>T	c.(502-504)CCG>CTG	p.P168L	C1orf127_uc001arr.1_Missense_Mutation_p.P150L|C1orf127_uc001ars.1_Missense_Mutation_p.P168L	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	168										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCCGGCCGCCGGAATGCTGAC	0.557													18	20					0	0	0.00278032	0	0
MTOR	2475	broad.mit.edu	37	1	11298094	11298094	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:11298094G>A	uc001asd.2	-	13	2135	c.2014C>T	c.(2014-2016)CGC>TGC	p.R672C		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	672	HEAT 2.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						ACACAGTAGCGAATGTCAGGG	0.552													11	30					0	0	0.000978159	0	0
C1orf158	93190	broad.mit.edu	37	1	12806420	12806420	+	Silent	SNP	G	A	A	rs3192728		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:12806420G>A	uc001auh.2	+	1	258	c.42G>A	c.(40-42)CCG>CCA	p.P14P	C1orf158_uc010obe.1_Silent_p.P14P	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	14										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCTACTCCGAGCTGGCAGA	0.478													20	35					0	0	0.00188189	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12884947	12884947	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:12884947C>T	uc001auk.2	-	4	1360	c.1164G>A	c.(1162-1164)TGG>TGA	p.W388*		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	388											0						CAAATCTGCTCCAGCAGAGAG	0.493													110	142					0	0	0.000781405	0	0
LOC649330	649330	broad.mit.edu	37	1	12907728	12907728	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:12907728C>T	uc009vno.2	-	1	510	c.415G>A	c.(415-417)GCT>ACT	p.A139T	HNRNPCL1_uc010obf.1_Missense_Mutation_p.A139T	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	139							nucleic acid binding|nucleotide binding				0						GGCACTACAGCCAGAGCAATG	0.498													39	54					0	0	0.000953801	0	0
LOC440563	440563	broad.mit.edu	37	1	13183212	13183212	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:13183212C>T	uc010obg.1	-	1	756	c.661G>A	c.(661-663)GAA>AAA	p.E221K		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	221						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TGCTCCTCTTCTGACTTAGCA	0.463													22	41					0	0	0.00047179	0	0
NBPF1	55672	broad.mit.edu	37	1	16892178	16892178	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:16892178G>A	uc009vos.1	-	28	4127	c.3239C>T	c.(3238-3240)TCC>TTC	p.S1080F	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1080	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGCATAAAAGGAACTTCCATA	0.453													25	616					0	0	0.00106085	0	0
MST1P9	11223	broad.mit.edu	37	1	17084074	17084074	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:17084074C>T	uc010ock.1	-	14	1847	c.1847G>A	c.(1846-1848)GGA>GAA	p.G616E	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.G216E	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCGCACATGTCCTCGGTGCTT	0.597													14	138					0	0	0.000422831	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808644	18808644	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:18808644C>T	uc001bax.2	+	1	1221	c.1169C>T	c.(1168-1170)CCA>CTA	p.P390L	KLHDC7A_uc009vpg.2_Missense_Mutation_p.P172L	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	390						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCACCCTGCCCAGACCCGGGC	0.667													17	21					0	0	0.000958276	0	0
KIAA0090	23065	broad.mit.edu	37	1	19567577	19567578	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:19567577_19567578CC>TT	uc001bbo.2	-	6	611_612	c.568_569GG>AA	c.(568-570)GGA>AAA	p.G190K	KIAA0090_uc001bbp.2_Missense_Mutation_p.G190K|KIAA0090_uc001bbq.2_Missense_Mutation_p.G190K|KIAA0090_uc001bbr.2_Missense_Mutation_p.G168K	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	190	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		GGGAACAACTCCGAGGGCCCAC	0.51											OREG0013169	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	59					0	0	6.4e-05	0	0
AKR7A2	8574	broad.mit.edu	37	1	19632545	19632545	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:19632545G>A	uc001bbw.2	-	6	907	c.885C>T	c.(883-885)GCC>GCT	p.A295A	AKR7A2_uc001bbx.2_Silent_p.A260A	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	295					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCACCGGAGGGCAGCCGAGG	0.627													33	40					0	0	0.00058488	0	0
ALPL	249	broad.mit.edu	37	1	21889735	21889735	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:21889735G>A	uc001bet.2	+	5	687	c.430G>A	c.(430-432)GGG>AGG	p.G144R	ALPL_uc010odn.1_Missense_Mutation_p.G92R|ALPL_uc010odo.1_Missense_Mutation_p.G89R|ALPL_uc010odp.1_Missense_Mutation_p.G67R|ALPL_uc001beu.3_Missense_Mutation_p.G144R	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	144					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	CACCACCCAGGGGAACGAGGT	0.572													14	19					0	0	0.000308642	0	0
HSPG2	3339	broad.mit.edu	37	1	22156080	22156080	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:22156080G>A	uc001bfj.2	-	87	11828	c.11788C>T	c.(11788-11790)CCC>TCC	p.P3930S	HSPG2_uc001bfi.2_5'UTR|HSPG2_uc009vqd.2_Missense_Mutation_p.P3931S	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3930	Laminin G-like 2.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GACAGCGAGGGGGTGGTCACT	0.657													8	18					0	0	0.000274275	0	0
HSPG2	3339	broad.mit.edu	37	1	22169905	22169905	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:22169905G>A	uc001bfj.2	-	66	8683	c.8643C>T	c.(8641-8643)AAC>AAT	p.N2881N	HSPG2_uc009vqd.2_Silent_p.N2882N	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2881	Ig-like C2-type 14.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GGGACACCTGGTTCAGCCTCA	0.652													11	12					0	0	0.00136819	0	0
WNT4	54361	broad.mit.edu	37	1	22456166	22456166	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:22456166G>C	uc001bfs.3	-	2	360	c.256C>G	c.(256-258)CGC>GGC	p.R86G	WNT4_uc010odt.1_Missense_Mutation_p.R23G	NM_030761	NP_110388	P56705	WNT4_HUMAN	wingless-type MMTV integration site family,	86					adrenal gland development|androgen biosynthetic process|anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|dermatome development|endoderm development|epithelial to mesenchymal transition|establishment of protein localization in plasma membrane|female gonad development|female sex determination|liver development|male gonad development|mesonephric tubule development|metanephric mesenchymal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of male gonad development|negative regulation of testicular blood vessel morphogenesis|negative regulation of testosterone biosynthetic process|negative regulation of transcription, DNA-dependent|oocyte development|paramesonephric duct development|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of collagen biosynthetic process|positive regulation of cortisol biosynthetic process|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|protein palmitoylation|renal vesicle formation|smooth muscle cell differentiation|somatotropin secreting cell differentiation|tertiary branching involved in mammary gland duct morphogenesis|thyroid-stimulating hormone-secreting cell differentiation|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|extracellular space|Golgi apparatus|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|signal transducer activity|transcription corepressor activity			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;9.02e-26)|Colorectal(126;1.71e-07)|COAD - Colon adenocarcinoma(152;1.17e-05)|GBM - Glioblastoma multiforme(114;2.01e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000568)|KIRC - Kidney renal clear cell carcinoma(1967;0.00277)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		CAGTTCCAGCGCCGGTTCCGG	0.662													9	26					0	0	0.000274275	0	0
EPHA8	2046	broad.mit.edu	37	1	22902869	22902869	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:22902869G>A	uc001bfx.1	+	3	444	c.319G>A	c.(319-321)GAC>AAC	p.D107N	EPHA8_uc001bfw.2_Missense_Mutation_p.D107N	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	107	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TACCCTGCGCGACTGCAACAG	0.622													22	31					0	0	0.00047179	0	0
MYOM3	127294	broad.mit.edu	37	1	24383924	24383924	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:24383924G>A	uc001bin.3	-	37	4407	c.4244C>T	c.(4243-4245)TCC>TTC	p.S1415F	MYOM3_uc001bil.3_Missense_Mutation_p.S308F|MYOM3_uc001bim.3_Missense_Mutation_p.S1072F	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1415	Ig-like C2-type 4.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GCCCGTCTCGGAGCCATACTT	0.572													18	28					0	0	0.00152264	0	0
IL28RA	163702	broad.mit.edu	37	1	24495953	24495953	+	Silent	SNP	G	A	A	rs141902174		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:24495953G>A	uc001bis.2	-	3	334	c.321C>T	c.(319-321)TCC>TCT	p.S107S	IL28RA_uc001bir.2_Silent_p.S107S|IL28RA_uc001bit.2_Silent_p.S107S|IL28RA_uc001biu.2_Silent_p.S23S|IL28RA_uc001biv.2_Silent_p.S107S	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	107	Extracellular (Potential).|Fibronectin type-III.				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		AGGGGGACTTGGAGCTGGGAG	0.547													21	27					0	0	0.00188189	0	0
SEPN1	57190	broad.mit.edu	37	1	26135082	26135082	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:26135082C>T	uc010oer.1	+	7	604	c.549C>T	c.(547-549)CTC>CTT	p.L183L	SEPN1_uc010oes.1_Silent_p.L149L	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	183						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCCCGCCTCGCCCTGTCCG	0.662													32	70					0	0	0.00283554	0	0
ARID1A	8289	broad.mit.edu	37	1	27106861	27106861	+	Silent	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:27106861C>A	uc001bmv.1	+	20	6845	c.6472C>A	c.(6472-6474)CGA>AGA	p.R2158R	ARID1A_uc001bmu.1_Silent_p.R1941R|ARID1A_uc001bmx.1_Silent_p.R1004R|ARID1A_uc009vsm.1_Silent_p.R486R|ARID1A_uc009vsn.1_Silent_p.R400R	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2158					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.R2158*(1)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CCTCAGTGACCGAAAGAACCC	0.597			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								30	40					3.99451e-17	1.82627e-16	0.00178596	1	0
SYTL1	84958	broad.mit.edu	37	1	27679914	27679915	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:27679914_27679915CC>TT	uc001bnw.1	+	14	1651_1652	c.1484_1485CC>TT	c.(1483-1485)TCC>TTT	p.S495F	SYTL1_uc001bnv.1_Missense_Mutation_p.S483F|SYTL1_uc009vsu.1_Missense_Mutation_p.S430F|SYTL1_uc009vsv.1_Missense_Mutation_p.S495F	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	495	C2 2.				exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GCCGAGCTCTCCCTCTGGGACC	0.554													16	17					0	0	6.4e-05	0	0
PTAFR	5724	broad.mit.edu	37	1	28476903	28476903	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:28476903G>A	uc001bpl.2	-	2	757	c.630C>T	c.(628-630)ATC>ATT	p.I210I	PTAFR_uc001bpm.3_Silent_p.I210I|PTAFR_uc009vte.2_Silent_p.I210I	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	210	Cytoplasmic (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		GCAAGGTACGGATGATGACCA	0.567													11	10					0	0	0.000978159	0	0
COL16A1	1307	broad.mit.edu	37	1	32167755	32167755	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:32167755G>A	uc001btk.1	-	2	405	c.40C>T	c.(40-42)CTT>TTT	p.L14F	COL16A1_uc001btl.3_Missense_Mutation_p.L14F	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	14					cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GTAGCCCAAAGACCGAGCAGC	0.592													26	24					0	0	0.00127121	0	0
ZMYM4	9202	broad.mit.edu	37	1	35881161	35881161	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:35881161C>T	uc001byt.2	+	28	4235	c.4155C>T	c.(4153-4155)TTC>TTT	p.F1385F	ZMYM4_uc009vuu.2_Silent_p.F1353F|ZMYM4_uc001byu.2_Silent_p.F1061F|ZMYM4_uc009vuv.2_Silent_p.F1124F	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1385					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCCTCCTTTTCTTCAATACCA	0.448													22	44					0	0	0.00278032	0	0
EIF2C3	192669	broad.mit.edu	37	1	36439063	36439063	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:36439063C>T	uc001bzp.2	+	5	865	c.609C>T	c.(607-609)TTC>TTT	p.F203F	EIF2C3_uc001bzn.1_Silent_p.F203F|EIF2C3_uc001bzo.2_RNA|EIF2C3_uc001bzq.2_Intron	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	203					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGTTTGGATTCCATCAGTCTG	0.458													57	58					0	0	0.000781405	0	0
MACF1	23499	broad.mit.edu	37	1	39824417	39824417	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:39824417C>T	uc010oiu.1	+	10	7443	c.7312C>T	c.(7312-7314)CAA>TAA	p.Q2438*	MACF1_uc010ois.1_Nonsense_Mutation_p.Q1936*|MACF1_uc001cda.1_Nonsense_Mutation_p.Q1844*|MACF1_uc001cdc.1_Nonsense_Mutation_p.Q1023*|MACF1_uc001cdb.1_Nonsense_Mutation_p.Q1023*	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4003	Spectrin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCAGTATCATCAATTCCAAAA	0.507													29	40					0	0	0.00106085	0	0
KIAA0754	643314	broad.mit.edu	37	1	39878534	39878534	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:39878534C>T	uc009vvt.1	+	1	3359	c.2597C>T	c.(2596-2598)CCA>CTA	p.P866L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	730											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GTGCCTGCCCCAGAGGGAACT	0.547													8	9					0	0	0.000157383	0	0
LEPRE1	64175	broad.mit.edu	37	1	43213059	43213059	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:43213059T>A	uc001chv.2	-	14	2052	c.1939A>T	c.(1939-1941)AGA>TGA	p.R647*	LEPRE1_uc001chw.2_Nonsense_Mutation_p.R647*|LEPRE1_uc001chx.3_Nonsense_Mutation_p.R647*	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	647	Fe2OG dioxygenase.				negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCCACGGCTCTTCCACACTGA	0.582											OREG0013422	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	33					0	0	0.00106085	0	0
KIAA0467	23334	broad.mit.edu	37	1	43896717	43896717	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:43896717C>T	uc001cjk.1	+	18	2637	c.2175C>T	c.(2173-2175)CCC>CCT	p.P725P		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1624						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGACTTTGCCCCTGGAAGTGG	0.617													25	35					0	0	0.000586117	0	0
KIAA0467	23334	broad.mit.edu	37	1	43907442	43907442	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:43907442C>T	uc001cjk.1	+	40	5460	c.4998C>T	c.(4996-4998)GTC>GTT	p.V1666V		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2565						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCGCACTGGTCACCTCAATGG	0.527													19	37					0	0	0.00121646	0	0
KLF17	128209	broad.mit.edu	37	1	44595563	44595563	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:44595563C>T	uc001clp.2	+	2	678	c.620C>T	c.(619-621)TCC>TTC	p.S207F	KLF17_uc009vxf.1_Missense_Mutation_p.S170F	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	207					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GTGCTCCCCTCCATGGCTCAG	0.582													19	36					0	0	0.00152264	0	0
MAST2	23139	broad.mit.edu	37	1	46499889	46499889	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:46499889C>T	uc001cov.2	+	28	4102	c.3819C>T	c.(3817-3819)CCC>CCT	p.P1273P	MAST2_uc001cow.2_Silent_p.P1272P|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1273					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GCCTTTCCCCCCGATCTCCCA	0.602													15	13					0	0	0.000308642	0	0
NSUN4	387338	broad.mit.edu	37	1	46827414	46827414	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:46827414A>T	uc001cpr.1	+	6	1160	c.1051A>T	c.(1051-1053)ACA>TCA	p.T351S	NSUN4_uc010omc.1_Missense_Mutation_p.T302S|NSUN4_uc009vyf.1_Missense_Mutation_p.T200S|NSUN4_uc009vyg.1_Missense_Mutation_p.T302S|NSUN4_uc001cpt.1_RNA|NSUN4_uc001cps.1_RNA	NM_199044	NP_950245	Q96CB9	NSUN4_HUMAN	NOL1/NOP2/Sun domain family 4 protein	351							methyltransferase activity				0	Acute lymphoblastic leukemia(166;0.155)					TTTCATGGACACATTTTGTTT	0.488													40	72					0	0	0.00128727	0	0
CDCP2	200008	broad.mit.edu	37	1	54610383	54610383	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:54610383C>T	uc001cwv.1	-	2	1031	c.183G>A	c.(181-183)GTG>GTA	p.V61V		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	61	CUB 1.					extracellular region				ovary(1)	1						CCTCGGCCACCACGATCAGCC	0.557													9	21					0	0	0.000673444	0	0
C8A	731	broad.mit.edu	37	1	57378088	57378088	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:57378088C>T	uc001cyo.2	+	10	1525	c.1393C>T	c.(1393-1395)CAC>TAC	p.H465Y		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	465	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GCAGCCTATCCACGAGGTGCT	0.572													12	24					0	0	0.00185496	0	0
OMA1	115209	broad.mit.edu	37	1	59004545	59004545	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:59004545C>A	uc001cyy.2	-	2	510	c.422G>T	c.(421-423)CGG>CTG	p.R141L	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Missense_Mutation_p.R141L|OMA1_uc009vzz.2_Missense_Mutation_p.R141L	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	141					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					AGCTTGAAACCGTGGAGAAGT	0.393													5	122					0.00198382	0.00883401	0.00198382	1	0
FGGY	55277	broad.mit.edu	37	1	59922748	59922748	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:59922748G>A	uc001czi.3	+	6	882	c.670G>A	c.(670-672)GGA>AGA	p.G224R	FGGY_uc001czg.2_Missense_Mutation_p.G112R|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.G224R|FGGY_uc001czj.3_Missense_Mutation_p.G224R|FGGY_uc001czk.3_Missense_Mutation_p.G112R|FGGY_uc001czl.3_Missense_Mutation_p.G136R	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	224					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					CAGCAAAATAGGTAAAAGAAT	0.368													11	5					0	0	0.000978159	0	0
L1TD1	54596	broad.mit.edu	37	1	62675517	62675517	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:62675517C>T	uc001dae.3	+	4	1373	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	357										ovary(1)|skin(1)	2						GCTTGAGCTTCCTATTTCTTA	0.378													64	97					0	0	0.000781405	0	0
L1TD1	54596	broad.mit.edu	37	1	62675616	62675616	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:62675616G>A	uc001dae.3	+	4	1472	c.1170G>A	c.(1168-1170)GAG>GAA	p.E390E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	390	Glu-rich.									ovary(1)|skin(1)	2						TGGATGAAGAGGCCTCAGGGA	0.308													41	56					0	0	0.00148497	0	0
KANK4	163782	broad.mit.edu	37	1	62739384	62739384	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:62739384C>T	uc001dah.3	-	3	1769	c.1392G>A	c.(1390-1392)GGG>GGA	p.G464G	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	464										ovary(3)|skin(2)|lung(1)	6						GGCTCTGATTCCCTTGTTTAT	0.567													49	62					0	0	0.000781405	0	0
SGIP1	84251	broad.mit.edu	37	1	67155970	67155970	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:67155970C>T	uc001dcr.2	+	17	1758	c.1541C>T	c.(1540-1542)TCC>TTC	p.S514F	SGIP1_uc010opd.1_Missense_Mutation_p.S114F|SGIP1_uc001dcs.2_Missense_Mutation_p.S114F|SGIP1_uc001dct.2_Missense_Mutation_p.S114F|SGIP1_uc009wat.2_Missense_Mutation_p.S308F	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	514					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TCAACCAATTCCTTGAGCGCA	0.468													50	47					0	0	0.000781405	0	0
TNNI3K	51086	broad.mit.edu	37	1	74715179	74715179	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:74715179C>T	uc001dgf.1	+	3	237	c.186C>T	c.(184-186)TAC>TAT	p.Y62Y	TNNI3K_uc001dgc.1_Silent_p.Y163Y|TNNI3K_uc001dgd.2_Silent_p.Y163Y|TNNI3K_uc001dge.1_Silent_p.Y163Y	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	62						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						ATTTAAATTACCGCACTGAAA	0.328													23	39					0	0	0.000878237	0	0
C1orf173	127254	broad.mit.edu	37	1	75086533	75086533	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:75086533C>T	uc001dgg.2	-	8	1104	c.885G>A	c.(883-885)GGG>GGA	p.G295G	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.G89G	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	295										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GCACATTTTTCCCCAAATAGA	0.363													11	15					0	0	0.000673444	0	0
ACADM	34	broad.mit.edu	37	1	76194104	76194104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:76194104C>T	uc001dgw.3	+	2	479	c.49C>T	c.(49-51)CGT>TGT	p.R17C	ACADM_uc010orc.1_Missense_Mutation_p.R17C|ACADM_uc010ord.1_5'UTR|ACADM_uc009wbp.2_Missense_Mutation_p.R21C|ACADM_uc009wbr.2_Missense_Mutation_p.R17C|ACADM_uc010ore.1_Intron|ACADM_uc010orf.1_Intron|ACADM_uc001dgx.3_5'UTR	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	17					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						AAGTATTTCTCGTTTTCATTG	0.313													60	84					0	0	0.000781405	0	0
LPHN2	23266	broad.mit.edu	37	1	82431791	82431791	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:82431791A>T	uc001dit.3	+	11	2197	c.2016A>T	c.(2014-2016)AAA>AAT	p.K672N	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.K672N|LPHN2_uc001div.2_Missense_Mutation_p.K672N|LPHN2_uc009wcd.2_Missense_Mutation_p.K672N|LPHN2_uc001diw.2_Missense_Mutation_p.K256N	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	685	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AAGACTTTAAATTTCCTCTGG	0.438													22	34					0	0	0.00152264	0	0
DDAH1	23576	broad.mit.edu	37	1	85817207	85817207	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:85817207G>A	uc001dlb.2	-	3	620	c.459C>T	c.(457-459)ATC>ATT	p.I153I	DDAH1_uc001dlc.2_Silent_p.I50I|uc001dla.1_Intron|DDAH1_uc010osb.1_Silent_p.I53I|DDAH1_uc009wco.2_Silent_p.I50I	NM_012137	NP_036269	O94760	DDAH1_HUMAN	dimethylarginine dimethylaminohydrolase 1	153					arginine catabolic process|citrulline metabolic process|nitric oxide mediated signal transduction		dimethylargininase activity|metal ion binding				0				all cancers(265;0.0318)|Epithelial(280;0.0657)	L-Citrulline(DB00155)	TATCAGCCAAGATTTCAGCAC	0.383													26	44					0	0	0.00178596	0	0
ODF2L	57489	broad.mit.edu	37	1	86818611	86818611	+	Silent	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:86818611T>G	uc001dll.1	-	17	2164	c.1824A>C	c.(1822-1824)ATA>ATC	p.I608I	ODF2L_uc001dlm.1_Silent_p.I592I|ODF2L_uc001dln.2_Silent_p.I579I|ODF2L_uc001dlo.2_Silent_p.I448I|ODF2L_uc001dlp.2_Silent_p.I555I|ODF2L_uc010osg.1_Silent_p.I526I	NM_020729	NP_065780	Q9ULJ1	ODF2L_HUMAN	outer dense fiber of sperm tails 2-like isoform	608	Potential.					centrosome				ovary(1)	1				all cancers(265;0.0313)|Epithelial(280;0.0611)		CCAGATCTAATATTTTAATTT	0.274													15	11					0	0	0.00244969	0	0
GBP4	115361	broad.mit.edu	37	1	89655736	89655736	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:89655736G>A	uc001dnb.2	-	7	1298	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	394						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		GCTTCTTCTGGAATTCATGGT	0.478													18	33					0	0	0.00229938	0	0
PALMD	54873	broad.mit.edu	37	1	100155120	100155120	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:100155120G>A	uc001dsg.2	+	7	1747	c.1304G>A	c.(1303-1305)GGA>GAA	p.G435E	PALMD_uc001dsf.2_Missense_Mutation_p.G435E	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	435					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		TTTCTGACAGGATATGATGGG	0.478													10	9					0	0	0.000673444	0	0
FRRS1	391059	broad.mit.edu	37	1	100212969	100212969	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:100212969G>A	uc001dsh.1	-	4	816	c.214C>T	c.(214-216)CCA>TCA	p.P72S		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	72	Reelin.				electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		CCTTTAAATGGATGCCCTGAC	0.368													56	68					0	0	0.000781405	0	0
OLFM3	118427	broad.mit.edu	37	1	102270070	102270070	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:102270070A>G	uc001duf.2	-	6	1232	c.1161T>C	c.(1159-1161)ACT>ACC	p.T387T	OLFM3_uc001dug.2_Silent_p.T367T|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Silent_p.T292T|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	387	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		TGGGGTAGCCAGTGCTCCAGC	0.478													5	8					0	0	0.00116845	0	0
COL11A1	1301	broad.mit.edu	37	1	103352467	103352467	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:103352467G>A	uc001dul.2	-	63	5072	c.4754C>T	c.(4753-4755)TCC>TTC	p.S1585F	COL11A1_uc001duk.2_Missense_Mutation_p.S781F|COL11A1_uc001dum.2_Missense_Mutation_p.S1597F|COL11A1_uc001dun.2_Missense_Mutation_p.S1546F|COL11A1_uc009weh.2_Missense_Mutation_p.S1469F	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1585	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTGTTTCAGGGAATTGAGGGA	0.413													17	47					0	0	0.00121646	0	0
AMY2A	279	broad.mit.edu	37	1	104160630	104160630	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:104160630G>A	uc001dut.2	+	2	287	c.223G>A	c.(223-225)GAA>AAA	p.E75K	AMY2A_uc010ouq.1_Missense_Mutation_p.E75K	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	75					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	ACCTTGGTGGGAAAGATACCA	0.358													48	60					0	0	0.000781405	0	0
GPSM2	29899	broad.mit.edu	37	1	109472436	109472436	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:109472436G>T	uc010ovc.1	+	15	2425	c.1929G>T	c.(1927-1929)ATG>ATT	p.M643I	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.M643I|GPSM2_uc010ove.1_Missense_Mutation_p.M643I|CLCC1_uc001dwe.1_3'UTR|CLCC1_uc001dwf.1_3'UTR|CLCC1_uc001dwg.1_3'UTR	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	643	GoLoco 4.				G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		GAAAGAGAATGGATGAACAGA	0.398													13	396					0.00185496	0.00827215	0.00185496	1	0
WDR47	22911	broad.mit.edu	37	1	109560199	109560200	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:109560199_109560200CC>AA	uc001dwj.2	-	3	558_559	c.182_183GG>TT	c.(181-183)TGG>TTT	p.W61F	WDR47_uc001dwl.2_Missense_Mutation_p.W61F|WDR47_uc001dwi.2_Missense_Mutation_p.W61F|WDR47_uc001dwk.2_Intron|WDR47_uc010ovf.1_5'UTR	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	61	CTLH.									ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GAACTTCATCCCATTGACCATC	0.302													12	538					0	0	6.4e-05	0	0
CHI3L2	1117	broad.mit.edu	37	1	111784004	111784004	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:111784004C>T	uc001eam.2	+	9	1045	c.974C>T	c.(973-975)CCC>CTC	p.P325L	CHI3L2_uc001ean.2_Missense_Mutation_p.P315L|CHI3L2_uc001eao.2_Missense_Mutation_p.P246L|CHI3L2_uc009wga.2_Intron	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	325					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		CAACAGGTTCCCTACGCAGTC	0.537													10	21					0	0	0.00244969	0	0
ADORA3	140	broad.mit.edu	37	1	112033353	112033353	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:112033353G>A	uc001ebf.2	-	2	1149	c.382C>T	c.(382-384)CTA>TTA	p.L128L	ADORA3_uc001ebg.3_Silent_p.L47L	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	TGGAATGATAGAATGCACCCA	0.453													22	32					0	0	0.00229938	0	0
ADORA3	140	broad.mit.edu	37	1	112106514	112106514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:112106514C>T	uc001ebg.3	-	1	84	c.61G>A	c.(61-63)GAA>AAA	p.E21K	RAP1A_uc001ebi.2_Intron	NM_001081976	NP_001075445	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 3	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GGCTGCTCTTCCCAGGAGCTT	0.413													48	69					0	0	0.000781405	0	0
LRIG2	9860	broad.mit.edu	37	1	113637023	113637023	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:113637023C>T	uc001edf.1	+	5	776	c.578C>T	c.(577-579)TCC>TTC	p.S193F	LRIG2_uc009wgn.1_Missense_Mutation_p.S90F	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	193	LRR 6.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TTATCAAGTTCCTTATTAGTG	0.348													48	50					0	0	0.000781405	0	0
CSDE1	7812	broad.mit.edu	37	1	115268872	115268872	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:115268872C>T	uc001efk.2	-	14	2066	c.1600G>A	c.(1600-1602)GAA>AAA	p.E534K	CSDE1_uc001efi.2_Missense_Mutation_p.E580K|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Missense_Mutation_p.E503K|CSDE1_uc001efm.2_Missense_Mutation_p.E549K|CSDE1_uc009wgv.2_Missense_Mutation_p.E534K|CSDE1_uc001efn.2_Missense_Mutation_p.E503K	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	534	CSD 7.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGGCTGTTTCAATAAATCCA	0.398													13	17					0	0	0.00185496	0	0
SYCP1	6847	broad.mit.edu	37	1	115455667	115455667	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:115455667G>A	uc001efr.2	+	19	1752	c.1543G>A	c.(1543-1545)GAA>AAA	p.E515K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E515K|SYCP1_uc009wgw.2_Missense_Mutation_p.E515K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	515	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAAGAATACTGAATTAACTTC	0.204													21	34					0	0	0.00188189	0	0
PHGDH	26227	broad.mit.edu	37	1	120277263	120277264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:120277263_120277264GG>TT	uc001ehz.2	+	6	744_745	c.517_518GG>TT	c.(517-519)GGG>TTG	p.G173L	PHGDH_uc009whl.2_Missense_Mutation_p.G75L|PHGDH_uc009whm.2_Missense_Mutation_p.G71L|PHGDH_uc001eia.2_Missense_Mutation_p.G173L|PHGDH_uc009whn.2_Missense_Mutation_p.G173L|PHGDH_uc001eib.2_Missense_Mutation_p.G139L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	173					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCAGACTATAGGGTATGACCCC	0.446													13	364					0	0	6.4e-05	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767716	143767716	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:143767716C>T	uc001ejt.2	-	1	166	c.133G>A	c.(133-135)GGA>AGA	p.G45R		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	45	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						TAACGAAATCCTTTCTCTCCA	0.488													7	188					0	0	0.000422831	0	0
ITGA10	8515	broad.mit.edu	37	1	145532832	145532832	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:145532832T>C	uc001eoa.2	+	10	1225	c.1149_splice	c.e10+2	p.K383_splice	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Splice_Site_p.K252_splice|ITGA10_uc009wiw.2_Splice_Site_p.K240_splice|ITGA10_uc010oyw.1_Splice_Site_p.K328_splice	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor						cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGGCTAAAGGTTGGACAGATT	0.478													41	103					0	0	0.000680045	0	0
ANXA9	8416	broad.mit.edu	37	1	150955615	150955615	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:150955615C>T	uc001ewa.2	+	3	504	c.34C>T	c.(34-36)CTC>TTC	p.L12F		NM_003568	NP_003559	O76027	ANXA9_HUMAN	annexin A9	12					cell-cell adhesion	cell surface|cytosol	acetylcholine receptor activity|calcium ion binding|calcium-dependent phospholipid binding|phosphatidylserine binding|protein homodimerization activity				0	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGCACCGTCCCTCACCCAGGA	0.582													45	33					0	0	0.000781405	0	0
PRUNE	58497	broad.mit.edu	37	1	151006312	151006312	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:151006312C>T	uc001ewh.1	+	8	1100	c.964C>T	c.(964-966)CCA>TCA	p.P322S	PRUNE_uc001ewi.1_Missense_Mutation_p.P140S|PRUNE_uc010pco.1_Missense_Mutation_p.P90S|PRUNE_uc001ewj.1_Missense_Mutation_p.P37S|PRUNE_uc001ewk.1_Missense_Mutation_p.P87S|BNIPL_uc009wmi.2_5'Flank|BNIPL_uc001ewl.2_5'Flank	NM_021222	NP_067045	Q86TP1	PRUNE_HUMAN	prune	322						cytoplasm|focal adhesion|nucleus	inorganic diphosphatase activity|manganese ion binding|protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTCCCACTCTCCACCCCTGAA	0.512													42	131					0	0	0.000680045	0	0
FLG	2312	broad.mit.edu	37	1	152285957	152285957	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:152285957G>A	uc001ezu.1	-	3	1441	c.1405C>T	c.(1405-1407)CTC>TTC	p.L469F	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	469	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACCTGGTAGAGGGAAGACCCT	0.612									Ichthyosis				53	120					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152323424	152323424	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:152323424C>T	uc001ezw.3	-	3	6911	c.6838G>A	c.(6838-6840)GGA>AGA	p.G2280R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2280							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTTGAGATCCAGCTTGGCCC	0.512													60	48					0	0	0.000781405	0	0
INTS3	65123	broad.mit.edu	37	1	153723710	153723710	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:153723710G>A	uc009wom.2	+	8	945	c.724G>A	c.(724-726)GAA>AAA	p.E242K	INTS3_uc001fct.2_Missense_Mutation_p.E242K|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_Missense_Mutation_p.E36K|INTS3_uc010peb.1_Missense_Mutation_p.E36K|INTS3_uc001fcw.2_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	243					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ACTGCTTCGGGAACGGGTGAG	0.517													32	33					0	0	0.00128727	0	0
CREB3L4	148327	broad.mit.edu	37	1	153941080	153941080	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:153941080G>A	uc001fdn.3	+	2	345	c.79G>A	c.(79-81)GAG>AAG	p.E27K	SLC39A1_uc001fdl.2_5'Flank|CREB3L4_uc010pef.1_5'UTR|CREB3L4_uc001fdo.3_Missense_Mutation_p.E27K|CREB3L4_uc001fdm.1_Missense_Mutation_p.E27K|CREB3L4_uc001fdp.1_Missense_Mutation_p.E27K|CREB3L4_uc010peg.1_Missense_Mutation_p.E27K|CREB3L4_uc001fdr.2_Missense_Mutation_p.E27K|CREB3L4_uc001fdq.2_Missense_Mutation_p.E27K	NM_130898	NP_570968	Q8TEY5	CR3L4_HUMAN	cAMP responsive element binding protein 3-like	27	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ATCCGTCCTGGAGCTGGGACT	0.622													31	65					0	0	0.00209593	0	0
HCN3	57657	broad.mit.edu	37	1	155255662	155255662	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:155255662G>C	uc001fjz.1	+	6	1392	c.1384G>C	c.(1384-1386)GGG>CGG	p.G462R	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.G157R	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	462	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGGCTCCGTGGGGAGGAAGAT	0.632													4	153					0	0	0.00116845	0	0
HAPLN2	60484	broad.mit.edu	37	1	156594495	156594495	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:156594495G>A	uc001fpn.1	+	6	1066	c.659G>A	c.(658-660)CGG>CAG	p.R220Q		NM_021817	NP_068589	Q9GZV7	HPLN2_HUMAN	brain link protein-1 precursor	220	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGCCGAGGCCGGCCCGGGATC	0.741													6	10					0	0	0.00116845	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156917573	156917573	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:156917573C>T	uc001fqo.2	-	24	3249	c.2209G>A	c.(2209-2211)GAG>AAG	p.E737K	ARHGEF11_uc010phu.1_Missense_Mutation_p.E153K|ARHGEF11_uc001fqn.2_Missense_Mutation_p.E777K	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	737	DH.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TTGATGACCTCTTGCCGGTCA	0.572													33	23					0	0	0.000692331	0	0
OR10K1	391109	broad.mit.edu	37	1	158436191	158436191	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158436191C>T	uc010pij.1	+	1	840	c.840C>T	c.(838-840)ATC>ATT	p.I280I		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CATACACCATCCTTACCCCAT	0.393													26	50					0	0	0.001512	0	0
SPTA1	6708	broad.mit.edu	37	1	158609699	158609699	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158609699G>A	uc001fst.1	-	34	5035	c.4836C>T	c.(4834-4836)TTC>TTT	p.F1612F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1612	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGCTTGTGTTGAACCTCTGTT	0.453													36	25					0	0	0.000814825	0	0
SPTA1	6708	broad.mit.edu	37	1	158614107	158614107	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158614107G>A	uc001fst.1	-	30	4473	c.4274C>T	c.(4273-4275)TCC>TTC	p.S1425F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1425	Spectrin 14.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ACTGTCTAAGGAACTTTTGTC	0.423													16	10					0	0	0.00074312	0	0
SPTA1	6708	broad.mit.edu	37	1	158615073	158615073	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158615073C>T	uc001fst.1	-	29	4298	c.4099G>A	c.(4099-4101)GAA>AAA	p.E1367K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1367	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGCTTTTTTTCAATTTCAGGG	0.507													29	32					0	0	0.00209593	0	0
OR6K6	128371	broad.mit.edu	37	1	158725383	158725383	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158725383G>A	uc001fsw.1	+	1	778	c.778G>A	c.(778-780)GGT>AGT	p.G260S		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	260	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CTCAGCTGAAGGTCATCACAA	0.473													34	74					0	0	0.000953801	0	0
OR6N2	81442	broad.mit.edu	37	1	158746637	158746637	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:158746637C>T	uc010pir.1	-	1	789	c.789G>A	c.(787-789)AAG>AAA	p.K263K		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AATAGCTCTTCTTTAGCCGCA	0.443													22	39					0	0	0.00188189	0	0
CADM3	57863	broad.mit.edu	37	1	159169596	159169596	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:159169596C>T	uc001ftl.2	+	8	1150	c.1008C>T	c.(1006-1008)ATC>ATT	p.I336I	CADM3_uc001ftk.2_Silent_p.I370I|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	336	Helical; (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TCGGTGGGATCGTGGCTTTCA	0.557													27	53					0	0	0.00178596	0	0
OR10J3	441911	broad.mit.edu	37	1	159284246	159284246	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:159284246G>A	uc010piu.1	-	1	204	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					TCTCAGAGATGGATAGCATGC	0.498													16	64					0	0	0.000566183	0	0
IGSF9	57549	broad.mit.edu	37	1	159901383	159901383	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:159901383C>T	uc001fur.2	-	12	1571	c.1373G>A	c.(1372-1374)GGG>GAG	p.G458E	IGSF9_uc001fuq.2_Missense_Mutation_p.G442E|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	458	Ig-like 5.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCCTTGCAGCCCCCGGCCCAC	0.647													29	18					0	0	0.001512	0	0
ATP1A2	477	broad.mit.edu	37	1	160105253	160105253	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:160105253G>A	uc001fvc.2	+	16	2277	c.2145G>A	c.(2143-2145)GGG>GGA	p.G715G	ATP1A2_uc001fvb.2_Silent_p.G715G|ATP1A2_uc001fvd.2_Silent_p.G451G	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	715	Cytoplasmic (Potential).		G -> R (in FHM2; de novo mutation in a sporadic case).		ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CGGGTGACGGGGTGAACGACT	0.602													40	32					0	0	0.00285205	0	0
DCAF8	50717	broad.mit.edu	37	1	160250033	160250033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:160250033G>A	uc010pjc.1	-	4	429	c.157C>T	c.(157-159)CCA>TCA	p.P53S	PEX19_uc010pje.1_RNA|PEX19_uc001fvs.2_Missense_Mutation_p.P200S|PEX19_uc001fvt.2_Missense_Mutation_p.P110S	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	Error:Variant_position_missing_in_Q5TAQ9_after_alignment						CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						AACCATTCTGGATACTAAGAA	0.403													40	139					0	0	0.00170553	0	0
NCSTN	23385	broad.mit.edu	37	1	160326137	160326137	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:160326137G>A	uc001fvx.2	+	14	1763	c.1639G>A	c.(1639-1641)GGT>AGT	p.G547S	NCSTN_uc001fvy.2_Missense_Mutation_p.G527S|NCSTN_uc010pjf.1_Missense_Mutation_p.G409S|NCSTN_uc001fvz.2_Missense_Mutation_p.G327S|NCSTN_uc010pjg.1_Missense_Mutation_p.G289S	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	547	Extracellular (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTCCTACTTGGGTAAGCATCT	0.408													30	54					0	0	0.00283554	0	0
USF1	7391	broad.mit.edu	37	1	161010635	161010635	+	Silent	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:161010635C>G	uc001fxi.2	-	8	783	c.588G>C	c.(586-588)CGG>CGC	p.R196R	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Silent_p.R137R	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	196					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTTTCTCATCCCGAGTCGTCC	0.502													32	91					0	0	0.00111076	0	0
FCGR3A	2214	broad.mit.edu	37	1	161518410	161518410	+	Silent	SNP	C	T	T	rs147185130	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:161518410C>T	uc001gat.3	-	4	257	c.120G>A	c.(118-120)AAG>AAA	p.K40K	FCGR3A_uc001gar.2_Silent_p.K76K|FCGR3A_uc001gas.2_Silent_p.K75K|FCGR3A_uc009wuh.2_Silent_p.K39K|FCGR3A_uc009wui.2_Silent_p.K40K	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	40	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCACACTGTCCTTCTCGAGCA	0.552													56	124					0	0	0.000781405	0	0
ADCY10	55811	broad.mit.edu	37	1	167829070	167829070	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:167829070A>G	uc001ger.2	-	16	2169	c.1871T>C	c.(1870-1872)ATA>ACA	p.I624T	ADCY10_uc009wvk.2_Missense_Mutation_p.I532T|ADCY10_uc010plj.1_Missense_Mutation_p.I471T|ADCY10_uc009wvl.2_Missense_Mutation_p.I623T	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	624					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CATAAACAATATTTCCAATTG	0.398													208	121					0	0	0.000781405	0	0
DPT	1805	broad.mit.edu	37	1	168670275	168670275	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:168670275G>A	uc001gfp.2	-	3	535	c.519C>T	c.(517-519)ACC>ACT	p.T173T		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	173	2 X 53-55 AA tandem repeats.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					CAGAGAAAGTGGTTGTTGCTC	0.453													84	65					0	0	0.000781405	0	0
FMO3	2328	broad.mit.edu	37	1	171086447	171086447	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:171086447C>T	uc001ghi.2	+	9	1575	c.1464C>T	c.(1462-1464)ACC>ACT	p.T488T	FMO3_uc001ghh.2_Silent_p.T488T|FMO3_uc010pmb.1_Silent_p.T468T|FMO3_uc010pmc.1_Silent_p.T425T	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	488					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCATACTGACCCAGTGGGACC	0.527													4	24					0	0	0.000602214	0	0
SLC9A11	284525	broad.mit.edu	37	1	173493114	173493114	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:173493114G>A	uc001giz.2	-	21	3057	c.2634C>T	c.(2632-2634)TTC>TTT	p.F878F	SLC9A11_uc009wwe.2_Silent_p.F436F	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	878	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTACCTTGAAGAAGTCAATGA	0.378													60	55					0	0	0.000781405	0	0
SERPINC1	462	broad.mit.edu	37	1	173883882	173883882	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:173883882G>A	uc001gjt.2	-	2	336	c.217C>T	c.(217-219)CCG>TCG	p.P73S		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	73			P -> L (in AT3D; type-II; Basel/ Franconville/Clichy-1/Clichy-2/Dublin-2; lacks heparin-binding ability).		blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	GTGGCCTCCGGGATCTTCTGT	0.552											OREG0013990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	115					0	0	0.000781405	0	0
TNN	63923	broad.mit.edu	37	1	175049373	175049373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:175049373C>T	uc001gkl.1	+	4	972	c.859C>T	c.(859-861)CAG>TAG	p.Q287*	TNN_uc010pmx.1_Nonsense_Mutation_p.Q287*	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	287	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCCTCCAGCCAGGTGGATCA	0.597													8	41					0	0	0.000157383	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661407	176661407	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:176661407C>T	uc001gkz.2	+	6	3741	c.2577C>T	c.(2575-2577)TCC>TCT	p.S859S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	859					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCAACAAGTCCCTCACTATCC	0.507													21	86					0	0	0.000720815	0	0
PAPPA2	60676	broad.mit.edu	37	1	176664920	176664920	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:176664920C>T	uc001gkz.2	+	7	3835	c.2671C>T	c.(2671-2673)CGT>TGT	p.R891C	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	891					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGGGACCTTTCGTCAGTATGT	0.532													48	26					0	0	0.000781405	0	0
TDRD5	163589	broad.mit.edu	37	1	179603722	179603722	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:179603722G>T	uc001gnf.1	+	8	1507	c.1257G>T	c.(1255-1257)AAG>AAT	p.K419N	TDRD5_uc010pnp.1_Missense_Mutation_p.K419N|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	419					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CACAACAGAAGATTTGCAAGA	0.408													25	69					1.42536e-11	6.47822e-11	0.000720815	1	0
CEP350	9857	broad.mit.edu	37	1	180003091	180003092	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:180003091_180003092TC>GT	uc001gnt.2	+	16	4203_4204	c.3820_3821TC>GT	c.(3820-3822)TCT>GTT	p.S1274V	CEP350_uc009wxl.2_Missense_Mutation_p.S1273V|CEP350_uc001gnu.2_Missense_Mutation_p.S1107V	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1274	Ser-rich.					centrosome|nucleus|spindle				ovary(4)	4						TGCAGGAACTTCTTCAGAAAGA	0.45													31	97					0	0	6.4e-05	0	0
QSOX1	5768	broad.mit.edu	37	1	180165989	180165989	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:180165989G>A	uc001gnz.2	+	12	2136	c.2061G>A	c.(2059-2061)GAG>GAA	p.E687E	QSOX1_uc001gny.2_Intron|QSOX1_uc001goa.2_Intron|QSOX1_uc001goc.2_Silent_p.E229E|FLJ23867_uc001god.3_5'Flank	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	687					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						GCCAGCTGGAGGCCCGAGCTG	0.667													57	32					0	0	0.000781405	0	0
CACNA1E	777	broad.mit.edu	37	1	181750643	181750643	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:181750643C>T	uc001gow.2	+	39	5513	c.5348C>T	c.(5347-5349)TCC>TTC	p.S1783F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1671F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1009F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1783	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGATGTCCCTCCAAAGTGGCA	0.532													7	5					0	0	0.000442599	0	0
RGL1	23179	broad.mit.edu	37	1	183881362	183881362	+	Missense_Mutation	SNP	C	T	T	rs1140534		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:183881362C>T	uc001gqo.2	+	15	1866	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F	RGL1_uc010pof.1_Missense_Mutation_p.S375F|RGL1_uc001gqm.2_Missense_Mutation_p.S605F|RGL1_uc010pog.1_Missense_Mutation_p.S568F|RGL1_uc010poh.1_Missense_Mutation_p.S568F|RGL1_uc010poi.1_Missense_Mutation_p.S541F	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	570	Ser-rich.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						GAGGAGGGCTCCATTACTCCC	0.532													25	18					0	0	0.000586117	0	0
FAM129A	116496	broad.mit.edu	37	1	184775092	184775092	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:184775092G>A	uc001gra.2	-	11	1628	c.1434C>T	c.(1432-1434)CTC>CTT	p.L478L	FAM129A_uc001grb.1_Silent_p.L241L|FAM129A_uc009wyh.1_Silent_p.L306L	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	478					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TTAAGACTCGGAGTTTAACCT	0.433											OREG0014050	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	47					0	0	0.00278032	0	0
CFH	3075	broad.mit.edu	37	1	196694307	196694307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:196694307G>A	uc001gtj.3	+	12	1993	c.1753G>A	c.(1753-1755)GAC>AAC	p.D585N		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	585	Sushi 10.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TCGCAAGAAAGACCAGTATAA	0.353													13	4					0	0	0.00136819	0	0
CFHR4	10877	broad.mit.edu	37	1	196881972	196881972	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:196881972G>A	uc001gto.2	+	3	428	c.359G>A	c.(358-360)GGA>GAA	p.G120E	CFHR4_uc009wyy.2_Missense_Mutation_p.G366E|CFHR4_uc001gtp.2_Missense_Mutation_p.G367E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	120	Sushi 2.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						tGTAAACCAGGATATGCAACA	0.284													33	34					0	0	0.00178596	0	0
CFHR2	3080	broad.mit.edu	37	1	196918710	196918710	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:196918710C>T	uc001gtq.1	+	2	261	c.184C>T	c.(184-186)CCT>TCT	p.P62S	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	62	Sushi 1.					extracellular region				skin(2)|ovary(1)	3						TTTTGTGTCTCCTTCAAAATC	0.383													37	19					0	0	0.000953801	0	0
F13B	2165	broad.mit.edu	37	1	197029611	197029611	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:197029611G>A	uc001gtt.1	-	5	734	c.690C>T	c.(688-690)ACC>ACT	p.T230T		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	230	Sushi 4.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTTCTTCATAGGTTTGCTTTA	0.284													15	12					0	0	0.00244969	0	0
NR5A2	2494	broad.mit.edu	37	1	200090020	200090020	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:200090020C>T	uc001gvb.2	+	7	1521	c.1315C>T	c.(1315-1317)CGT>TGT	p.R439C	NR5A2_uc001gvc.2_Missense_Mutation_p.R393C|NR5A2_uc009wzh.2_Missense_Mutation_p.R399C|NR5A2_uc010pph.1_Missense_Mutation_p.R367C	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	439					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GGCAAAACTTCGTTCTCTCCA	0.438													32	83					0	0	0.0024448	0	0
KIF21B	23046	broad.mit.edu	37	1	200969524	200969524	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:200969524C>T	uc001gvs.1	-	11	1996	c.1679G>A	c.(1678-1680)AGG>AAG	p.R560K	KIF21B_uc001gvr.1_Missense_Mutation_p.R560K|KIF21B_uc009wzl.1_Missense_Mutation_p.R560K|KIF21B_uc010ppn.1_Missense_Mutation_p.R560K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	560	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCACCTCTTCCTCCGCTGCCT	0.662													41	105					0	0	0.000781405	0	0
CACNA1S	779	broad.mit.edu	37	1	201047096	201047096	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:201047096C>T	uc001gvv.2	-	11	1757	c.1530G>A	c.(1528-1530)GAG>GAA	p.E510E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	510	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGCAGGATCTCCAGGATAC	0.582													35	32					0	0	0.000680045	0	0
IGFN1	91156	broad.mit.edu	37	1	201184788	201184788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:201184788G>A	uc001gwc.2	+	4	1369	c.597G>A	c.(595-597)TGG>TGA	p.W199*	IGFN1_uc001gwb.2_Intron	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGGCTGCCTGGAGGAAGGACG	0.637													12	29					0	0	0.000308642	0	0
LAD1	3898	broad.mit.edu	37	1	201356205	201356205	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:201356205C>T	uc001gwm.2	-	3	519	c.284G>A	c.(283-285)CGG>CAG	p.R95Q	LAD1_uc009wzu.1_Missense_Mutation_p.R117Q	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	95						basement membrane	structural molecule activity				0						CCTCTGCCTCCGCTCCTGCCG	0.647													13	51					0	0	0.00185496	0	0
KDM5B	10765	broad.mit.edu	37	1	202702783	202702783	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:202702783G>T	uc001gyf.2	-	23	3771	c.3655C>A	c.(3655-3657)CCC>ACC	p.P1219T	KDM5B_uc009xag.2_Missense_Mutation_p.P1255T|KDM5B_uc001gyg.1_Missense_Mutation_p.P1061T	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1219	PHD-type 2.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CGACAATGGGGACAAAGCCAG	0.537													9	36					0.000274275	0.00122846	0.000274275	1	0
PPFIA4	8497	broad.mit.edu	37	1	203029523	203029523	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:203029523C>T	uc001gyz.2	+	9	1837	c.1244C>T	c.(1243-1245)TCT>TTT	p.S415F	PPFIA4_uc009xaj.2_Missense_Mutation_p.S1046F|PPFIA4_uc010pqf.1_Missense_Mutation_p.S628F|PPFIA4_uc001gza.2_Missense_Mutation_p.S415F|PPFIA4_uc001gzb.1_Missense_Mutation_p.S110F	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	415					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						ACCAGCCCCTCTGCCCCACCC	0.592													53	37					0	0	0.000781405	0	0
MYOG	4656	broad.mit.edu	37	1	203055032	203055032	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:203055032C>T	uc001gzd.2	-	1	346	c.58G>A	c.(58-60)GAA>AAA	p.E20K		NM_002479	NP_002470	P15173	MYOG_HUMAN	myogenin	20					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			skin(2)	2						AGGTAGTTTTCCCCATCATAG	0.617													17	33					0	0	0.00152264	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204410671	204410671	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:204410671G>A	uc001haw.2	-	22	3656	c.3177C>T	c.(3175-3177)TCC>TCT	p.S1059S	PIK3C2B_uc010pqv.1_Silent_p.S1031S	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1059					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GGACAGCATTGGAGTTGAAGT	0.502													59	27					0	0	0.000781405	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205306583	205306583	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:205306583C>T	uc001hcf.1	-	6	1565	c.997G>A	c.(997-999)GGT>AGT	p.G333S	KLHDC8A_uc010prg.1_Missense_Mutation_p.G220S|KLHDC8A_uc001hcg.1_Missense_Mutation_p.G333S	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	333										ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			TGGTTGACACCTCCCACGGCG	0.592													45	107					0	0	0.00285205	0	0
PIGR	5284	broad.mit.edu	37	1	207105032	207105032	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:207105032G>A	uc001hez.2	-	9	2308	c.2124C>T	c.(2122-2124)TCC>TCT	p.S708S	PIGR_uc009xbz.2_Silent_p.S708S	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	708	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TTCCTCCGAGGGATGTCTCCT	0.507													59	46					0	0	0.000781405	0	0
CR1L	1379	broad.mit.edu	37	1	207850751	207850751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:207850751G>A	uc001hga.3	+	2	236	c.115G>A	c.(115-117)GAA>AAA	p.E39K	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	39	Sushi 1.					cytoplasm|extracellular region|membrane					0						CAATGTCCCGGAATGGCTTCC	0.393													21	70					0	0	0.00229938	0	0
LPGAT1	9926	broad.mit.edu	37	1	211952371	211952371	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:211952371C>T	uc001hiu.2	-	6	1556	c.743G>A	c.(742-744)GGC>GAC	p.G248D	LPGAT1_uc001hiv.2_Missense_Mutation_p.G248D	NM_014873	NP_055688	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	248					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		CCACTGGAGGCCTTTTGATTT	0.343													51	175					0	0	0.000781405	0	0
BATF3	55509	broad.mit.edu	37	1	212860307	212860307	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:212860307C>T	uc001hjl.1	-	3	433	c.210G>A	c.(208-210)CTG>CTA	p.L70L		NM_018664	NP_061134	Q9NR55	BATF3_HUMAN	basic leucine zipper transcription factor,	70	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0046)|all cancers(67;0.00785)|GBM - Glioblastoma multiforme(131;0.0731)|Epithelial(68;0.0781)		TTTCTTGCTCCAGGCTCTCAT	0.572													116	68					0	0	0.000781405	0	0
CENPF	1063	broad.mit.edu	37	1	214791977	214791977	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:214791977C>T	uc001hkm.2	+	4	595	c.421C>T	c.(421-423)CCA>TCA	p.P141S		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	141	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CTCTCTGAATCCATGCAATAC	0.388													65	64					0	0	0.000781405	0	0
USH2A	7399	broad.mit.edu	37	1	215847652	215847652	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:215847652C>T	uc001hku.1	-	63	13988	c.13601G>A	c.(13600-13602)GGG>GAG	p.G4534E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4534	Fibronectin type-III 31.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGGTTCCATCCCTGAGGGTGC	0.507										HNSCC(13;0.011)			58	38					0	0	0.000781405	0	0
SUSD4	55061	broad.mit.edu	37	1	223402594	223402594	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:223402594G>A	uc001hnx.2	-	5	1495	c.861C>T	c.(859-861)ATC>ATT	p.I287I	SUSD4_uc001hny.3_Silent_p.I287I|SUSD4_uc010puw.1_Silent_p.I127I	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	287	Sushi 4.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		ACTGGCAGGTGATGTACTTGT	0.537													36	96					0	0	0.00222228	0	0
OBSCN	84033	broad.mit.edu	37	1	228503687	228503687	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:228503687G>A	uc009xez.1	+	50	13196	c.13152G>A	c.(13150-13152)GAG>GAA	p.E4384E	OBSCN_uc001hsn.2_Silent_p.E4384E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4384	Ig-like 45.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACACCTCGGAGAACGCCGAGG	0.677													9	6					0	0	0.000673444	0	0
OBSCN	84033	broad.mit.edu	37	1	228504468	228504468	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:228504468G>A	uc009xez.1	+	51	13388	c.13344G>A	c.(13342-13344)CAG>CAA	p.Q4448Q	OBSCN_uc001hsn.2_Silent_p.Q4448Q	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4448	Ig-like 46.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCGGCGCACAGGCATGCTTCA	0.672													21	10					0	0	0.00188189	0	0
TARBP1	6894	broad.mit.edu	37	1	234573064	234573064	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:234573064G>A	uc001hwd.2	-	13	2189	c.2189C>T	c.(2188-2190)TCT>TTT	p.S730F		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	730					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			AATAAATTCAGAAATGCTCTC	0.333													115	68					0	0	0.000781405	0	0
LYST	1130	broad.mit.edu	37	1	235860522	235860522	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:235860522G>A	uc001hxj.2	-	46	10600	c.10425C>T	c.(10423-10425)TCC>TCT	p.S3475S	LYST_uc001hxi.2_Silent_p.S699S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3475					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GAGCACTGGGGGAACCCACGT	0.473									Chediak-Higashi_syndrome				25	50					0	0	0.000878237	0	0
HEATR1	55127	broad.mit.edu	37	1	236761208	236761208	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:236761208G>A	uc001hyd.1	-	5	698	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	191					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AACTGCAAATGAAATCCATGA	0.353													47	35					0	0	0.000781405	0	0
RYR2	6262	broad.mit.edu	37	1	237774182	237774182	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:237774182C>T	uc001hyl.1	+	36	4924	c.4804C>T	c.(4804-4806)CAG>TAG	p.Q1602*		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1602	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AATGCCCAACCAGTTTTTGAA	0.537													16	7					0	0	0.000566183	0	0
FMN2	56776	broad.mit.edu	37	1	240371608	240371608	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:240371608C>T	uc010pyd.1	+	5	3721	c.3496C>T	c.(3496-3498)CCC>TCC	p.P1166S	FMN2_uc010pye.1_Missense_Mutation_p.P1170S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1166	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ACCCCCACCTCCCCCTCTACC	0.692													7	0					0	0	0.000978159	0	0
PLD5	200150	broad.mit.edu	37	1	242287898	242287898	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:242287898G>A	uc001hzn.1	-	6	932	c.805C>T	c.(805-807)CTA>TTA	p.L269L	PLD5_uc001hzl.3_Silent_p.L207L|PLD5_uc001hzm.3_Silent_p.L59L|PLD5_uc001hzo.1_Silent_p.L177L			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	269						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			GAACTATATAGAGCAAATATC	0.368													18	49					0	0	0.00121646	0	0
AKT3	10000	broad.mit.edu	37	1	243675635	243675635	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:243675635G>A	uc001iab.1	-	12	1426	c.1345C>T	c.(1345-1347)CCT>TCT	p.P449S	AKT3_uc001hzz.1_Missense_Mutation_p.P449S	NM_005465	NP_005456	Q9Y243	AKT3_HUMAN	AKT3 kinase isoform 1	449	AGC-kinase C-terminal.				signal transduction	Golgi apparatus|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_cancers(71;0.000307)|all_epithelial(71;0.000374)|all_lung(81;0.0323)|Ovarian(71;0.0619)|all_neural(11;0.101)|Lung NSC(105;0.168)	all_cancers(173;0.0274)	all cancers(7;4.3e-08)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00196)			CATTTTTCAGGTGGTGTTATT	0.284													18	54					0	0	0.000566183	0	0
KIF26B	55083	broad.mit.edu	37	1	245865885	245865885	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:245865885G>A	uc001ibf.1	+	15	6744	c.6304G>A	c.(6304-6306)GAC>AAC	p.D2102N		NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	2102					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			CACCTGCTTCGACATCACCTC	0.607													57	32					0	0	0.000781405	0	0
NLRP3	114548	broad.mit.edu	37	1	247588449	247588449	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:247588449C>T	uc001icr.2	+	5	1842	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F	NLRP3_uc001ics.2_Silent_p.F568F|NLRP3_uc001icu.2_Silent_p.F568F|NLRP3_uc001icw.2_Silent_p.F568F|NLRP3_uc001icv.2_Silent_p.F568F|NLRP3_uc010pyw.1_Silent_p.F566F|NLRP3_uc001ict.1_Silent_p.F566F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	568					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ATGGCAAATTCGAAAAGGGGT	0.463													30	55					0	0	0.00178596	0	0
OR2B11	127623	broad.mit.edu	37	1	247614625	247614625	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:247614625G>A	uc010pyx.1	-	1	660	c.660C>T	c.(658-660)CTC>CTT	p.L220L		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	220	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGCCATAGGAGAGAAGGATGA	0.577													22	56					0	0	0.00188189	0	0
OR2G3	81469	broad.mit.edu	37	1	247769009	247769009	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:247769009G>A	uc010pyz.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ACCCTTGTGGGAAACTTCACC	0.448													62	122					0	0	0.000781405	0	0
OR2W3	343171	broad.mit.edu	37	1	248059135	248059135	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248059135T>C	uc001idp.1	+	3	516	c.247T>C	c.(247-249)TAC>CAC	p.Y83H	OR2W3_uc010pzb.1_Missense_Mutation_p.Y83H	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCAGCTGCTCTACAACCTTAA	0.587													35	78					0	0	0.000953801	0	0
OR2W3	343171	broad.mit.edu	37	1	248059530	248059530	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248059530C>T	uc001idp.1	+	3	911	c.642C>T	c.(640-642)ATC>ATT	p.I214I	OR2W3_uc010pzb.1_Silent_p.I214I	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGGTGTTTATCCTGCTCTCTT	0.587													97	75					0	0	0.000781405	0	0
OR2T8	343172	broad.mit.edu	37	1	248084465	248084466	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248084465_248084466GG>AA	uc010pzc.1	+	1	146_147	c.146_147GG>AA	c.(145-147)TGG>TAA	p.W49*		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CTGATTCACTGGGACCACCGGC	0.525													11	43					0	0	6.4e-05	0	0
OR2L8	391190	broad.mit.edu	37	1	248112261	248112261	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248112261C>T	uc001idt.1	+	1	102	c.102C>T	c.(100-102)TTC>TTT	p.F34F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TTTTCATTTTCCTGATGGCTC	0.398													82	51					0	0	0.000781405	0	0
OR2L2	26246	broad.mit.edu	37	1	248201816	248201816	+	Missense_Mutation	SNP	G	A	A	rs142994715		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248201816G>A	uc001idw.2	+	1	343	c.247G>A	c.(247-249)GAT>AAT	p.D83N	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.D83N(1)		ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GAtggtttatgattttctgta	0.308													127	74					0	0	0.000781405	0	0
OR2M5	127059	broad.mit.edu	37	1	248308997	248308997	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248308997C>T	uc010pze.1	+	1	548	c.548C>T	c.(547-549)TCC>TTC	p.S183F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GACTTCCCTTCCCTACTAATC	0.418													33	78					0	0	0.000692331	0	0
OR2T1	26696	broad.mit.edu	37	1	248570104	248570104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248570104G>A	uc010pzm.1	+	1	809	c.809G>A	c.(808-810)CGA>CAA	p.R270Q		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	270	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCCTATGCCCGAATCCTGACT	0.507													10	27					0	0	0.000673444	0	0
OR14I1	401994	broad.mit.edu	37	1	248845270	248845270	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr1:248845270G>A	uc001ieu.1	-	1	336	c.336C>T	c.(334-336)TTC>TTT	p.F112F		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGACAGTAAGGAAGGCCAGCT	0.507													24	20					0	0	0.00278032	0	0
ADARB2	105	broad.mit.edu	37	10	1262904	1262904	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:1262904C>T	uc009xhq.2	-	7	2043	c.1669G>A	c.(1669-1671)GAC>AAC	p.D557N		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	557	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GCGATCTTGTCCGTGCAGGAC	0.687													6	9					0	0	0.00198382	0	0
AKR1C3	8644	broad.mit.edu	37	10	5144346	5144346	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:5144346G>A	uc001ihr.2	+	6	807	c.624G>A	c.(622-624)TCG>TCA	p.S208S	AKR1C3_uc010qap.1_Silent_p.S185S|AKR1C3_uc001ihu.2_Silent_p.S208S	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	208					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	TCTGCAAGTCGAAAGATATTG	0.373													23	39					0	0	0.000878237	0	0
CALML3	810	broad.mit.edu	37	10	5567427	5567427	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:5567427C>T	uc001iie.1	+	1	504	c.379C>T	c.(379-381)CGG>TGG	p.R127W	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	127	EF-hand 4.						calcium ion binding				0						CGAGATGATCCGGGCCGCGGA	0.667													15	17					0	0	0.000422831	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553059	6553059	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:6553059G>A	uc001ijj.1	-	3	291	c.216C>T	c.(214-216)ATC>ATT	p.I72I	PRKCQ_uc009xim.1_Silent_p.I72I|PRKCQ_uc001iji.1_Silent_p.I105I|PRKCQ_uc009xin.1_Silent_p.I36I|PRKCQ_uc010qax.1_5'UTR	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	72	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CTTTCACAATGATCTGCATGA	0.483													33	40					0	0	0.00283554	0	0
UPF2	26019	broad.mit.edu	37	10	12077265	12077266	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:12077265_12077266GG>TT	uc001ila.2	-	1	631_632	c.157_158CC>AA	c.(157-159)CCT>AAT	p.P53N	UPF2_uc001ilb.2_Missense_Mutation_p.P53N|UPF2_uc001ilc.2_Missense_Mutation_p.P53N|UPF2_uc009xiz.1_Missense_Mutation_p.P53N	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	53	Glu/Lys-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CTTGTCTTCAGGGGCCTTGCTG	0.441													14	730					0	0	6.4e-05	0	0
PHYH	5264	broad.mit.edu	37	10	13323103	13323103	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:13323103G>A	uc001imf.2	-	8	924	c.836C>T	c.(835-837)TCC>TTC	p.S279F	PHYH_uc001ime.2_Missense_Mutation_p.S179F|PHYH_uc001img.2_Missense_Mutation_p.S262F	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	279					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	GAAATGGCAGGAAATTGCCTG	0.403													16	37					0	0	0.000958276	0	0
PRPF18	8559	broad.mit.edu	37	10	13656021	13656021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:13656021C>T	uc001imp.2	+	8	875	c.727C>T	c.(727-729)CCT>TCT	p.P243S	PRPF18_uc001imq.2_Intron	NM_003675	NP_003666	Q99633	PRP18_HUMAN	PRP18 pre-mRNA processing factor 18 homolog	243					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex				central_nervous_system(1)	1						TCAGAATCTTCCTGCTGATAT	0.279													16	21					0	0	0.000308642	0	0
CUBN	8029	broad.mit.edu	37	10	16982135	16982135	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:16982135G>A	uc001ioo.2	-	37	5496	c.5444C>T	c.(5443-5445)TCC>TTC	p.S1815F		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1815	CUB 12.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAGAGGGAAGGAGTTTCCACA	0.502													53	80					0	0	0.000781405	0	0
MYO3A	53904	broad.mit.edu	37	10	26459434	26459434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:26459434G>A	uc001isn.2	+	29	3724	c.3364G>A	c.(3364-3366)GAA>AAA	p.E1122K	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1122					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TTCTGATCAGGAATTCGACTA	0.338													9	14					0	0	0.000442599	0	0
MYO3A	53904	broad.mit.edu	37	10	26463421	26463421	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:26463421G>A	uc001isn.2	+	30	4588	c.4228G>A	c.(4228-4230)GAT>AAT	p.D1410N	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1410					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CAAGAAGAAGGATAACAAAGA	0.323													36	66					0	0	0.00111076	0	0
MKX	283078	broad.mit.edu	37	10	28023534	28023534	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:28023534G>A	uc001ity.3	-	5	914	c.689C>T	c.(688-690)TCT>TTT	p.S230F	MKX_uc001itx.3_Missense_Mutation_p.S230F	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	230					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATGTCTCAAAGAGTCATTAAG	0.478													21	32					0	0	0.00152264	0	0
ARMC4	55130	broad.mit.edu	37	10	28224036	28224036	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:28224036G>A	uc009xky.2	-	16	2496	c.2398C>T	c.(2398-2400)CAA>TAA	p.Q800*	ARMC4_uc010qds.1_Nonsense_Mutation_p.Q325*|ARMC4_uc010qdt.1_Nonsense_Mutation_p.Q492*|ARMC4_uc001itz.2_Nonsense_Mutation_p.Q800*	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	800							binding			ovary(4)|skin(2)	6						ACAAGTGGTTGAATGCCACCA	0.448													22	26					0	0	0.00047179	0	0
MPP7	143098	broad.mit.edu	37	10	28409259	28409259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:28409259C>T	uc001iua.1	-	12	1155	c.751G>A	c.(751-753)GAA>AAA	p.E251K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E251K|MPP7_uc009xla.2_Missense_Mutation_p.E251K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	251	SH3.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						AGCCCAGCTTCCTTACATGGA	0.383													18	44					0	0	0.00152264	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318274	30318274	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:30318274T>C	uc001iux.2	-	2	862	c.803A>G	c.(802-804)AAT>AGT	p.N268S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.N130S|KIAA1462_uc009xle.1_Missense_Mutation_p.N268S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	268	Pro-rich.									ovary(4)	4						GGAGTCCAAATTTGGTGCGCA	0.527													29	37					0	0	0.001512	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37438604	37438604	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:37438604C>T	uc001iza.1	+	10	1500	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	523						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CATCTGCCTTCAAGGTATTTA	0.299													30	37					0	0	0.0024448	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37454074	37454074	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:37454074G>A	uc001iza.1	+	18	1986	c.1887G>A	c.(1885-1887)TGG>TGA	p.W629*		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	685						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAATTCTTGGGATACTGAGG	0.323													21	34					0	0	0.00229938	0	0
PPYR1	5540	broad.mit.edu	37	10	47087533	47087533	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:47087533G>A	uc001jee.2	+	3	1169	c.750G>A	c.(748-750)AAG>AAA	p.K250K	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.K250K	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	250	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TGTTTCACAAGGGCACCTACA	0.597													14	102					0	0	0.00244969	0	0
RBP3	5949	broad.mit.edu	37	10	48387869	48387869	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:48387869G>A	uc001jez.2	-	1	3123	c.3009C>T	c.(3007-3009)ATC>ATT	p.I1003I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1003	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CATTCTCAGGGATATGGGCTG	0.602													44	45					0	0	0.0025221	0	0
Unknown	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:48968566A>G	uc001jgc.1	+	3		c.1234A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACAGGATAACAAACTGGAAAA	0.284													7	51					0	0	0.00198382	0	0
FRMPD2	143162	broad.mit.edu	37	10	49386156	49386156	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:49386156G>A	uc001jgi.2	-	22	2936	c.2829C>T	c.(2827-2829)ATC>ATT	p.I943I	FRMPD2_uc001jgh.2_Silent_p.I911I|FRMPD2_uc001jgj.2_Silent_p.I921I|FRMPD2L1_uc001jgf.2_5'Flank|FRMPD2_uc001jgg.2_5'Flank|FRMPD2_uc001jgk.2_5'UTR	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	943					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CACCAGCACTGATTTCTGGAG	0.408													14	23					0	0	0.00229938	0	0
FRMPD2	143162	broad.mit.edu	37	10	49400818	49400818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:49400818G>A	uc001jgi.2	-	16	2181	c.2074C>T	c.(2074-2076)CAG>TAG	p.Q692*	FRMPD2_uc001jgh.2_Nonsense_Mutation_p.Q660*|FRMPD2_uc001jgj.2_Nonsense_Mutation_p.Q670*	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	692					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCAGCACCCTGAAGCCTGGAT	0.537													35	37					0	0	0.00128727	0	0
FRMPD2	143162	broad.mit.edu	37	10	49444536	49444537	+	Missense_Mutation	DNP	CC	TT	TT	rs148563650		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:49444536_49444537CC>TT	uc001jgi.2	-	9	1088_1089	c.981_982GG>AA	c.(979-984)CCGGGA>CCAAGA	p.G328R	FRMPD2_uc001jgh.2_Missense_Mutation_p.G297R|FRMPD2_uc001jgj.2_Missense_Mutation_p.G306R	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	328					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		ACAACCGATCCCGGCAGATGTA	0.55													27	36					0	0	6.4e-05	0	0
BICC1	80114	broad.mit.edu	37	10	60273023	60273023	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:60273023C>T	uc001jki.1	+	1	120	c.120C>T	c.(118-120)ACC>ACT	p.T40T		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	40					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						CCGGGGCGACCCTGCACAGCC	0.677													9	16					0	0	0.000673444	0	0
BICC1	80114	broad.mit.edu	37	10	60562907	60562907	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:60562907C>T	uc001jki.1	+	15	2086	c.2086C>T	c.(2086-2088)CCA>TCA	p.P696S	BICC1_uc001jkj.1_Missense_Mutation_p.P337S	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	696					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						CAAGAAGGCTCCAGGGAGTGA	0.532													13	12					0	0	0.000308642	0	0
ANK3	288	broad.mit.edu	37	10	61955965	61955965	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:61955965C>G	uc001jky.2	-	16	2017	c.1825G>C	c.(1825-1827)GAT>CAT	p.D609H	ANK3_uc010qih.1_Missense_Mutation_p.D592H|ANK3_uc001jkz.3_Missense_Mutation_p.D603H|ANK3_uc001jlb.1_Missense_Mutation_p.D138H|ANK3_uc001jlc.1_Missense_Mutation_p.D270H	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	609	ANK 17.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCTGATTATCGTAATGTGCA	0.483													13	18					0	0	0.00244969	0	0
STOX1	219736	broad.mit.edu	37	10	70645062	70645062	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:70645062G>A	uc001jos.2	+	3	1597	c.1510G>A	c.(1510-1512)GGA>AGA	p.G504R	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.G394R	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	504						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						GTCTCACCGAGGAAGCACAAT	0.448													13	30					0	0	0.00185496	0	0
COL13A1	1305	broad.mit.edu	37	10	71705454	71705454	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:71705454G>A	uc001jpr.1	+	35	2499	c.1963G>A	c.(1963-1965)GGA>AGA	p.G655R	COL13A1_uc001jqj.1_Missense_Mutation_p.G628R|COL13A1_uc001jps.1_Missense_Mutation_p.G626R|COL13A1_uc001jpt.1_Missense_Mutation_p.G614R|COL13A1_uc001jpu.1_Missense_Mutation_p.G624R|COL13A1_uc001jpv.1_Missense_Mutation_p.G629R|COL13A1_uc001jpx.1_Missense_Mutation_p.G606R|COL13A1_uc001jpw.1_Missense_Mutation_p.G602R|COL13A1_uc001jpy.1_Missense_Mutation_p.G593R|COL13A1_uc001jpz.1_Missense_Mutation_p.G598R|COL13A1_uc001jqa.1_Missense_Mutation_p.G595R|COL13A1_uc001jqc.1_Missense_Mutation_p.G640R|COL13A1_uc001jqb.1_Missense_Mutation_p.G577R|COL13A1_uc001jql.2_Missense_Mutation_p.G655R|COL13A1_uc001jqd.1_Missense_Mutation_p.G643R|COL13A1_uc001jqe.1_Missense_Mutation_p.G638R|COL13A1_uc001jqf.1_Missense_Mutation_p.G636R|COL13A1_uc001jqg.1_Missense_Mutation_p.G633R|COL13A1_uc001jqh.1_Missense_Mutation_p.G643R|COL13A1_uc001jqi.1_Missense_Mutation_p.G641R|COL13A1_uc010qjf.1_Missense_Mutation_p.G430R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	655	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TGGGATGACAGGACCAACGGG	0.517													8	9					0	0	0.000274275	0	0
UNC5B	219699	broad.mit.edu	37	10	73048424	73048424	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:73048424G>A	uc001jro.2	+	7	1446	c.1001G>A	c.(1000-1002)GGA>GAA	p.G334E	UNC5B_uc001jrp.2_Missense_Mutation_p.G334E	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	334	TSP type-1 2.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CCCCAGAACGGAGGCCGTGAC	0.657													18	18					0	0	0.000566183	0	0
P4HA1	5033	broad.mit.edu	37	10	74833576	74833576	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:74833576G>A	uc010qka.1	-	4	420	c.86C>T	c.(85-87)ACT>ATT	p.T29I	P4HA1_uc001jtg.2_Missense_Mutation_p.T29I|P4HA1_uc001jth.2_Missense_Mutation_p.T29I|P4HA1_uc010qkb.1_Missense_Mutation_p.T29I|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	29						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GATCAAATCAGTCATCTGACC	0.333													31	37					0	0	0.00178596	0	0
MYST4	23522	broad.mit.edu	37	10	76789951	76789951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:76789951C>T	uc001jwn.1	+	18	5862	c.5369C>T	c.(5368-5370)GCC>GTC	p.A1790V	MYST4_uc001jwo.1_Missense_Mutation_p.A1498V|MYST4_uc001jwp.1_Missense_Mutation_p.A1607V	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1790	Interaction with RUNX1 and RUNX2.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					ACGAGCAACGCCAACATTGGC	0.587			T	CREBBP	AML								33	28					0	0	0.00058488	0	0
POLR3A	11128	broad.mit.edu	37	10	79739921	79739921	+	Silent	SNP	G	A	A	rs112788477		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:79739921G>A	uc001jzn.2	-	30	4096	c.4002C>T	c.(4000-4002)TTC>TTT	p.F1334F		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	1334					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CCTTCTGCCCGAAGTAGGCAG	0.493													30	41					0	0	0.000692331	0	0
SFTPD	6441	broad.mit.edu	37	10	81701243	81701243	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:81701243C>T	uc001kbh.2	-	6	621	c.578G>A	c.(577-579)GGA>GAA	p.G193E	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	193	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			ACCTGGACTTCCCTGGGGACC	0.507													15	43					0	0	0.000958276	0	0
GRID1	2894	broad.mit.edu	37	10	87484319	87484319	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:87484319C>T	uc001kdl.1	-	11	1749	c.1648G>A	c.(1648-1650)GAG>AAG	p.E550K	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.E121K	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	550	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CTGATTTTCTCCTCGGGCTTC	0.502										Multiple Myeloma(13;0.14)			19	26					0	0	0.00152264	0	0
LIPF	8513	broad.mit.edu	37	10	90427426	90427426	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:90427426A>T	uc001kfg.1	+	3	372	c.206A>T	c.(205-207)AAA>ATA	p.K69I	LIPF_uc009xtk.2_Missense_Mutation_p.K69I|LIPF_uc001kfh.1_Missense_Mutation_p.K79I|LIPF_uc010qmt.1_Missense_Mutation_p.K79I|LIPF_uc010qmu.1_Missense_Mutation_p.K69I	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	69					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TATGGGAAGAAAAATTCAGGG	0.209													52	65					0	0	0.000781405	0	0
TNKS2	80351	broad.mit.edu	37	10	93582121	93582121	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:93582121T>C	uc001khp.2	+	7	1092	c.795_splice	c.e7+2	p.K265_splice		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related						positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				TTGGTCAAGGTTAGTGCTCTT	0.343													53	70					0	0	0.000781405	0	0
PDE6C	5146	broad.mit.edu	37	10	95372844	95372844	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:95372844C>T	uc001kiu.3	+	1	500	c.362C>T	c.(361-363)TCC>TTC	p.S121F		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	121	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				ACCCCCACCTCCAAGTTTGAG	0.562													27	35					0	0	0.00209593	0	0
CYP2C18	1562	broad.mit.edu	37	10	96480210	96480210	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:96480210G>A	uc001kjv.3	+	6	1203	c.877G>A	c.(877-879)GAT>AAT	p.D293N	CYP2C18_uc001kjw.3_Missense_Mutation_p.D234N|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	293					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CACTGTAACTGATATGTTTGG	0.393													6	7					0	0	0.00116845	0	0
PSD	5662	broad.mit.edu	37	10	104176224	104176224	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:104176224G>A	uc001kvg.1	-	2	1099	c.572C>T	c.(571-573)TCT>TTT	p.S191F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.S191F|PSD_uc001kvi.1_Missense_Mutation_p.S191F|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	191					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		ATTGGGGAGAGAGGAGTAAAG	0.657													11	19					0	0	0.000978159	0	0
CYP17A1	1586	broad.mit.edu	37	10	104590597	104590597	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:104590597G>A	uc001kwg.2	-	8	1561	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	C10orf26_uc009xxg.1_RNA	NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	463					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	CCTCCAGGTCGAACCTCTGCA	0.577													4	5					0	0	0.00024832	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105362473	105362473	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:105362473G>A	uc001kxj.1	-	14	2558	c.2418C>T	c.(2416-2418)ACC>ACT	p.T806T	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Silent_p.T641T|SH3PXD2A_uc010qqt.1_Silent_p.T683T|SH3PXD2A_uc009xxn.1_Silent_p.T641T|SH3PXD2A_uc010qqu.1_Silent_p.T749T	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	834					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		ATTCCTTCTTGGTGGGACATG	0.647													31	44					0	0	0.0024448	0	0
SLK	9748	broad.mit.edu	37	10	105727572	105727572	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:105727572C>A	uc001kxo.1	+	1	103	c.69C>A	c.(67-69)CAC>CAA	p.H23Q	SLK_uc001kxp.1_Missense_Mutation_p.H23Q	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	23					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGTACGAACACGTGAAGAGGG	0.483													33	39					2.80507e-11	1.27396e-10	0.0024448	1	0
COL17A1	1308	broad.mit.edu	37	10	105797396	105797396	+	Missense_Mutation	SNP	C	T	T	rs147631156	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:105797396C>T	uc001kxr.2	-	46	3375	c.3206G>A	c.(3205-3207)CGG>CAG	p.R1069Q		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1069	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GGGCTTACTCCGTAAGTAGCT	0.602													38	38					0	0	0.00148497	0	0
C10orf79	80217	broad.mit.edu	37	10	105890062	105890063	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:105890062_105890063CC>TT	uc001kxw.2	-	38	4948_4949	c.4832_4833GG>AA	c.(4831-4833)GGG>GAA	p.G1611E	C10orf79_uc009xxq.2_Missense_Mutation_p.G890E	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1611											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TCAGTTTAGACCCTATCCCAAA	0.322													14	45					0	0	6.4e-05	0	0
VWA2	340706	broad.mit.edu	37	10	116049017	116049017	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:116049017G>A	uc001lbl.1	+	12	2212	c.1891G>A	c.(1891-1893)GGT>AGT	p.G631S	VWA2_uc001lbk.1_Missense_Mutation_p.G631S|VWA2_uc009xyf.1_Missense_Mutation_p.G327S	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	631	VWFA 3.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		TGCCCGGCCTGGTGTCCCCAA	0.627													7	16					0	0	0.000274275	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118202572	118202572	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:118202572C>T	uc001lcl.3	+	3	311	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	70					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		AACAGGAGATCAGTGCGGTTA	0.358													7	4					0	0	0.00198382	0	0
TACC2	10579	broad.mit.edu	37	10	123971070	123971070	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:123971070C>T	uc001lfv.2	+	9	7490	c.7130C>T	c.(7129-7131)TCC>TTC	p.S2377F	TACC2_uc001lfw.2_Missense_Mutation_p.S523F|TACC2_uc009xzx.2_Missense_Mutation_p.S2332F|TACC2_uc010qtv.1_Missense_Mutation_p.S2381F|TACC2_uc001lfx.2_Missense_Mutation_p.S81F|TACC2_uc001lfy.2_Missense_Mutation_p.S81F|TACC2_uc001lfz.2_Missense_Mutation_p.S455F|TACC2_uc001lga.2_Missense_Mutation_p.S455F|TACC2_uc009xzy.2_Missense_Mutation_p.S455F|TACC2_uc001lgb.2_Missense_Mutation_p.S412F|TACC2_uc010qtw.1_Missense_Mutation_p.S472F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2377	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGTGATGAGTCCGTTGACCCC	0.493													74	84					0	0	0.000781405	0	0
FAM24A	118670	broad.mit.edu	37	10	124672372	124672372	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:124672372G>A	uc001lgv.2	+	3	341	c.220G>A	c.(220-222)GAG>AAG	p.E74K		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	74						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		CACCACCATGGAGTCTTGTCC	0.512													31	33					0	0	0.0024448	0	0
HMX2	3167	broad.mit.edu	37	10	124909315	124909315	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:124909315C>T	uc001lhc.1	+	2	755	c.498C>T	c.(496-498)TCC>TCT	p.S166S		NM_005519	NP_005510	A2RU54	HMX2_HUMAN	H6 family homeobox 2	166	Homeobox.				cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.169)|Colorectal(57;0.207)|Glioma(114;0.222)		Colorectal(40;0.123)|COAD - Colon adenocarcinoma(40;0.141)		AGCTCGAGTCCACCTTCGACA	0.677													10	16					0	0	0.000673444	0	0
CPXM2	119587	broad.mit.edu	37	10	125639769	125639769	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:125639769C>T	uc001lhk.1	-	2	686	c.361G>A	c.(361-363)GAT>AAT	p.D121N	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	121					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CTGTGATCATCGTTGGCAGCC	0.507													70	98					0	0	0.000781405	0	0
FAM175B	23172	broad.mit.edu	37	10	126523138	126523138	+	Silent	SNP	G	A	A	rs115537499	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:126523138G>A	uc001lib.3	+	9	891	c.846G>A	c.(844-846)CGG>CGA	p.R282R		NM_032182	NP_115558	Q15018	F175B_HUMAN	hypothetical protein LOC23172	282						BRISC complex	polyubiquitin binding				0						TCAGTCCTCGGATGCCGTCCT	0.502													22	27					0	0	0.000586117	0	0
BCCIP	56647	broad.mit.edu	37	10	127520013	127520013	+	Nonsense_Mutation	SNP	C	T	T	rs141189146		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr10:127520013C>T	uc001ljb.3	+	5	459	c.436C>T	c.(436-438)CAA>TAA	p.Q146*	BCCIP_uc001ljd.3_Nonsense_Mutation_p.Q146*|BCCIP_uc010qui.1_Nonsense_Mutation_p.Q146*|BCCIP_uc001ljc.3_Nonsense_Mutation_p.Q146*|BCCIP_uc010quj.1_Nonsense_Mutation_p.Q116*	NM_078468	NP_510868	Q9P287	BCCIP_HUMAN	BRCA2 and CDKN1A-interacting protein isoform	146	Interaction with BRCA2.				cell cycle|DNA repair|neuroendocrine cell differentiation|regulation of cyclin-dependent protein kinase activity	nuclear cyclin-dependent protein kinase holoenzyme complex	kinase regulator activity|protein binding			ovary(1)|breast(1)	2		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TGAACAAATTCAAGAGTTGGT	0.423													26	38					0	0	0.001512	0	0
PKP3	11187	broad.mit.edu	37	11	396916	396916	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:396916G>A	uc001lpc.2	+	3	491	c.415G>A	c.(415-417)GGG>AGG	p.G139R		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	139					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGCCCACAACGGGGGCAGCGC	0.711													12	1					0	0	0.00136819	0	0
OR51F1	256892	broad.mit.edu	37	11	4790701	4790701	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:4790701C>T	uc010qyl.1	-	1	447	c.447G>A	c.(445-447)CTG>CTA	p.L149L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	149						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		GTGTAATCATCAGAAGACCCA	0.428													25	4					0	0	0.00047179	0	0
OR52R1	119695	broad.mit.edu	37	11	4825248	4825248	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:4825248C>T	uc010qym.1	-	1	600	c.600G>A	c.(598-600)ATG>ATA	p.M200I		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	121	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTCCAGGGCCATAGCCATGA	0.537													20	6					0	0	0.00121646	0	0
OR51M1	390059	broad.mit.edu	37	11	5411135	5411135	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:5411135C>T	uc010qzc.1	+	1	507	c.507C>T	c.(505-507)ATC>ATT	p.I169I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	169						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGCCACTATCCCTATTGTCC	0.547													136	24					0	0	0.000781405	0	0
OR52D1	390066	broad.mit.edu	37	11	5510223	5510223	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:5510223C>T	uc010qzg.1	+	1	287	c.287C>T	c.(286-288)TCC>TTC	p.S96F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGAGATTTCCTTTGGTGGA	0.498													18	4					0	0	0.00074312	0	0
SOX6	55553	broad.mit.edu	37	11	16071335	16071335	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:16071335G>A	uc001mme.2	-	11	1473	c.1440C>T	c.(1438-1440)CCC>CCT	p.P480P	SOX6_uc001mmd.2_Silent_p.P429P|SOX6_uc001mmf.2_Silent_p.P426P|SOX6_uc001mmg.2_Silent_p.P467P	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	467					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						TTCCTCCAATGGGGCTAGGGA	0.488													30	4					0	0	0.00283554	0	0
LOC494141	494141	broad.mit.edu	37	11	18231202	18231202	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:18231202G>A	uc009yhh.2	+	2		c.226G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AAAAAAAAAAGAAAAAGTCCT	0.179													7	16					0	0	0.000274275	0	0
IGSF22	283284	broad.mit.edu	37	11	18730970	18730970	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:18730970C>T	uc009yht.2	-	18	3152	c.2962G>A	c.(2962-2964)GAG>AAG	p.E988K	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	887	Fibronectin type-III 2.									ovary(4)|large_intestine(2)|kidney(1)	7						TTGTCTAGCTCCACAGGCTCC	0.577													35	8					0	0	0.00148497	0	0
PTPN5	84867	broad.mit.edu	37	11	18763942	18763942	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:18763942C>T	uc001mpd.2	-	7	1023	c.592G>A	c.(592-594)GAG>AAG	p.E198K	PTPN5_uc001mpb.2_Missense_Mutation_p.E166K|PTPN5_uc001mpc.2_Missense_Mutation_p.E198K|PTPN5_uc001mpe.2_Missense_Mutation_p.E166K|PTPN5_uc010rdj.1_Missense_Mutation_p.E142K|PTPN5_uc001mpf.2_Missense_Mutation_p.E174K|PTPN5_uc010rdk.1_Missense_Mutation_p.E143K	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	198						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						ATCTTCTCCTCCATCCACTCT	0.622													36	8					0	0	0.00283554	0	0
ANO3	63982	broad.mit.edu	37	11	26681885	26681885	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:26681885G>A	uc001mqt.3	+	27	2985	c.2840G>A	c.(2839-2841)CGA>CAA	p.R947Q	ANO3_uc010rdr.1_Missense_Mutation_p.R931Q|ANO3_uc010rds.1_Missense_Mutation_p.R786Q|ANO3_uc010rdt.1_Missense_Mutation_p.R801Q	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	947	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GACCGAATACGACGAGAGAAG	0.413													19	3					0	0	0.00074312	0	0
CCDC73	493860	broad.mit.edu	37	11	32663547	32663547	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:32663547C>T	uc001mtv.2	-	13	1065	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	CCDC73_uc001mtw.1_Missense_Mutation_p.E331K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	341	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					AGTGCTTTTTCATGCTCATTT	0.244													14	35					0	0	0.000308642	0	0
PAMR1	25891	broad.mit.edu	37	11	35457605	35457605	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:35457605G>A	uc001mwg.2	-	9	1222	c.1179C>T	c.(1177-1179)GCC>GCT	p.A393A	PAMR1_uc001mwf.2_Silent_p.A410A|PAMR1_uc010rew.1_Silent_p.A282A|PAMR1_uc010rex.1_Silent_p.A353A	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	393	Sushi 2.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAAAGGGAAGGGCTGGCTTCT	0.572													111	15					0	0	0.000781405	0	0
PTPRJ	5795	broad.mit.edu	37	11	48177548	48177548	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:48177548C>T	uc001ngp.3	+	21	3670	c.3315C>T	c.(3313-3315)TCC>TCT	p.S1105S		NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	1105	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GCTACCACTCCAAGAAAGATT	0.393													45	76					0	0	0.000781405	0	0
OR4B1	119765	broad.mit.edu	37	11	48239049	48239049	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:48239049G>A	uc010rhs.1	+	1	688	c.688G>A	c.(688-690)GGG>AGG	p.G230R		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						TTCTGCAGAGGGGAGGCACAA	0.468													6	10					0	0	0.00198382	0	0
OR5D13	390142	broad.mit.edu	37	11	55541558	55541558	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55541558C>T	uc010ril.1	+	1	645	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GCCTAATTATCATTCTGACAT	0.438													8	19					0	0	0.000442599	0	0
OR5W2	390148	broad.mit.edu	37	11	55681498	55681498	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55681498G>A	uc010rir.1	-	1	561	c.561C>T	c.(559-561)CTC>CTT	p.L187L		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTGAGCGAGAGAGTAATAAGA	0.383													23	33					0	0	0.00047179	0	0
OR8I2	120586	broad.mit.edu	37	11	55861530	55861530	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55861530C>T	uc010rix.1	+	1	747	c.747C>T	c.(745-747)ATC>ATT	p.I249I		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					CTGTAACTATCTTTTATGGGT	0.488													5	17					0	0	0.00116845	0	0
OR8H2	390151	broad.mit.edu	37	11	55872560	55872560	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55872560C>T	uc010riy.1	+	1	42	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CTGACTTCATCCTTATGGGAC	0.403										HNSCC(53;0.14)			44	61					0	0	0.000781405	0	0
OR8H3	390152	broad.mit.edu	37	11	55890037	55890037	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55890037C>T	uc001nii.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TGTATTTTTTCCTTACTCACC	0.428													33	27					0	0	0.00111076	0	0
OR8H3	390152	broad.mit.edu	37	11	55890756	55890756	+	Missense_Mutation	SNP	G	T	T	rs146433594		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:55890756G>T	uc001nii.1	+	1	908	c.908G>T	c.(907-909)AGA>ATA	p.R303I		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					GCTCTCATTAGAGTCATGCAG	0.358													11	28					9.04627e-18	4.13899e-17	0.00185496	1	0
OR5T1	390155	broad.mit.edu	37	11	56043769	56043769	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:56043769G>A	uc001nio.1	+	1	655	c.655G>A	c.(655-657)GAG>AAG	p.E219K		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GGGCTCTATTGAGATAGTCAC	0.413													31	52					0	0	0.00209593	0	0
OR5M1	390168	broad.mit.edu	37	11	56380880	56380880	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:56380880C>T	uc001nja.1	-	1	99	c.99G>A	c.(97-99)GCG>GCA	p.A33A		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTAGGTAGATCGCAAGGAATA	0.493													14	17					0	0	0.00185496	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757303	56757303	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:56757303G>A	uc010rjp.1	+	1	915	c.915G>A	c.(913-915)GGG>GGA	p.G305G		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAGTGATAGGGAAAAAGTTAT	0.303													7	18					0	0	0.00198382	0	0
P2RX3	5024	broad.mit.edu	37	11	57135900	57135900	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:57135900C>A	uc001nju.2	+	10	1068	c.992C>A	c.(991-993)TCT>TAT	p.S331Y		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	331	Helical; Name=2; (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GCCTTTACTTCTGTGGGAGTG	0.612													37	59					5.43694e-19	2.48944e-18	0.00111076	1	0
MS4A3	932	broad.mit.edu	37	11	59837105	59837105	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:59837105C>T	uc001nom.2	+	6	700	c.572C>T	c.(571-573)ACC>ATC	p.T191I	MS4A3_uc001non.2_Missense_Mutation_p.T145I|MS4A3_uc001noo.2_Missense_Mutation_p.T68I	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	191	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				ACCATCTCTACCATAGCCATG	0.433													144	157					0	0	0.000781405	0	0
MS4A4A	51338	broad.mit.edu	37	11	60068515	60068515	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:60068515A>G	uc001noz.2	+	4	382	c.372A>G	c.(370-372)AGA>AGG	p.R124R	MS4A4A_uc001npa.2_Silent_p.R105R|MS4A4A_uc001npb.2_Silent_p.R105R|MS4A4A_uc001npc.2_Silent_p.R105R	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	124	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CAGGAATTAGAACTACAAAAG	0.313													20	23					0	0	0.00229938	0	0
FADS2	9415	broad.mit.edu	37	11	61631244	61631244	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:61631244C>T	uc001nsl.1	+	10	1293	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	FADS2_uc001nsj.2_Silent_p.F359F|FADS2_uc010rlo.1_Silent_p.F350F|FADS2_uc001nsk.2_Silent_p.F381F	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	381	Cytoplasmic (Potential).			NF -> SL (in Ref. 4; BAB55167).	electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	ACCTTAACTTCCAGATTGAGC	0.602													10	19					0	0	0.00136819	0	0
FADS2	9415	broad.mit.edu	37	11	61631251	61631251	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:61631251G>T	uc001nsl.1	+	10	1300	c.1150G>T	c.(1150-1152)GAG>TAG	p.E384*	FADS2_uc001nsj.2_Nonsense_Mutation_p.E362*|FADS2_uc010rlo.1_Nonsense_Mutation_p.E353*|FADS2_uc001nsk.2_Nonsense_Mutation_p.E384*	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	384	Cytoplasmic (Potential).|Histidine box-3.				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CTTCCAGATTGAGCACCAGTG	0.622													13	15					1.52009e-12	6.919e-12	0.000308642	1	0
SLC22A10	387775	broad.mit.edu	37	11	63067081	63067081	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:63067081C>T	uc009yor.2	+	6	1258	c.1050C>T	c.(1048-1050)ATC>ATT	p.I350I	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.I190I	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	350	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GTAAAAGGATCTGTATCCTGG	0.423													6	12					0	0	0.00198382	0	0
SLC22A10	387775	broad.mit.edu	37	11	63071643	63071643	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:63071643C>T	uc009yor.2	+	8	1557	c.1349C>T	c.(1348-1350)TCC>TTC	p.S450F	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Missense_Mutation_p.P244S	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	450	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GCTACTTTTTCCAGTGTTGCT	0.463													45	59					0	0	0.000781405	0	0
CCDC88B	283234	broad.mit.edu	37	11	64112035	64112036	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:64112035_64112036GG>AA	uc001nzy.2	+	14	2066_2067	c.2022_2023GG>AA	c.(2020-2025)ACGGGA>ACAAGA	p.G675R	CCDC88B_uc009ypo.1_Missense_Mutation_p.G672R|CCDC88B_uc001nzz.1_Missense_Mutation_p.G324R	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	675					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						ACCTGGCCACGGGACAAGCAGA	0.639													12	5					0	0	6.4e-05	0	0
MEN1	4221	broad.mit.edu	37	11	64571899	64571899	+	Silent	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:64571899C>G	uc001obj.2	-	10	1828	c.1755G>C	c.(1753-1755)ACG>ACC	p.T585T	MAP4K2_uc001obh.2_5'Flank|MAP4K2_uc001obi.2_5'Flank|MAP4K2_uc010rnp.1_5'Flank|MEN1_uc001obk.2_Silent_p.T585T|MEN1_uc001obl.2_Silent_p.T545T|MEN1_uc001obm.2_Silent_p.T580T|MEN1_uc001obn.2_Silent_p.T585T|MEN1_uc001obo.2_Silent_p.T585T|MEN1_uc001obp.2_Silent_p.T580T|MEN1_uc001obq.2_Silent_p.T585T|MEN1_uc001obr.2_Silent_p.T585T	NM_130800	NP_570712	O00255	MEN1_HUMAN	menin isoform 1	585					DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			parathyroid(105)|pancreas(64)|gastrointestinal_tract_(site_indeterminate)(15)|small_intestine(13)|lung(9)|pituitary(7)|NS(7)|adrenal_gland(5)|soft_tissue(4)|central_nervous_system(4)|thymus(2)|stomach(1)|retroperitoneum(1)|skin(1)	238						GCGACTGTGCCGTGAGTTGCA	0.542			D|Mis|N|F|S		parathyroid tumors|Pancreatic neuroendocrine tumors	parathyroid adenoma|pituitary adenoma|pancreatic islet cell|carcinoid			Hyperparathyroidism_Familial_Isolated|Multiple_Endocrine_Neoplasia_type_1				4	188					0	0	0.000602214	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64603243	64603243	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:64603243G>A	uc001obs.3	-	14	1749	c.1749C>T	c.(1747-1749)TCC>TCT	p.S583S		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	583	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CCTTGGCCTGGGACGACTCCT	0.662													11	21					0	0	0.000978159	0	0
EHD1	10938	broad.mit.edu	37	11	64622919	64622919	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:64622919G>A	uc001obu.1	-	4	1210	c.955C>T	c.(955-957)CCC>TCC	p.P319S	EHD1_uc001obt.1_Missense_Mutation_p.P2S|EHD1_uc001obv.1_Missense_Mutation_p.P319S|EHD1_uc010rnq.1_Missense_Mutation_p.P333S	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	319					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						AAGACATTGGGCATCTCTTTC	0.557											OREG0004024	type=REGULATORY REGION|Gene=EHD1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	43	59					0	0	0.000680045	0	0
SPDYC	387778	broad.mit.edu	37	11	64938873	64938874	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:64938873_64938874CC>TT	uc010rnz.1	+	2	102_103	c.102_103CC>TT	c.(100-105)ACCCAG>ACTTAG	p.Q35*		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	35					cell cycle	nucleus	protein kinase binding				0						TAGTTACCACCCAGGTAGAGCT	0.604													29	50					0	0	6.4e-05	0	0
POLA2	23649	broad.mit.edu	37	11	65046372	65046372	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:65046372G>A	uc001odj.2	+	6	975	c.633G>A	c.(631-633)CAG>CAA	p.Q211Q	POLA2_uc009yqf.1_Silent_p.Q211Q|POLA2_uc010rod.1_Silent_p.Q3Q|POLA2_uc001odk.2_5'Flank	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	211					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	CCATGTTTCAGAAGCTCCCAG	0.468													39	55					0	0	0.00148497	0	0
CDC42EP2	10435	broad.mit.edu	37	11	65088864	65088864	+	Silent	SNP	G	A	A	rs140875363	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:65088864G>A	uc001odl.2	+	2	945	c.495G>A	c.(493-495)CCG>CCA	p.P165P		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	165					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						GACTGACCCCGGAGTCAGGGG	0.637													20	15					0	0	0.00152264	0	0
LTBP3	4054	broad.mit.edu	37	11	65320351	65320351	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:65320351G>A	uc001oej.2	-	6	1435	c.1166C>T	c.(1165-1167)CCC>CTC	p.P389L	LTBP3_uc010roi.1_Missense_Mutation_p.P272L|LTBP3_uc001oei.2_Missense_Mutation_p.P389L|LTBP3_uc010roj.1_Intron|LTBP3_uc010rok.1_Missense_Mutation_p.P300L	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	389	EGF-like 2; calcium-binding (Potential).					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						TGTACGGGAGGGGCCTAAACT	0.587													10	16					0	0	0.00136819	0	0
PACS1	55690	broad.mit.edu	37	11	66010697	66010697	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:66010697C>T	uc001oha.1	+	24	2972	c.2838C>T	c.(2836-2838)CCC>CCT	p.P946P	PACS1_uc010rou.1_Silent_p.P482P	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	946					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CCCAGTGGCCCACCCATGTCA	0.607													5	9					0	0	0.000602214	0	0
BBS1	582	broad.mit.edu	37	11	66288844	66288844	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:66288844G>A	uc001oij.1	+	9	839	c.827G>A	c.(826-828)AGA>AAA	p.R276K	BBS1_uc001oii.1_Missense_Mutation_p.R313K|BBS1_uc010rpf.1_RNA|BBS1_uc010rpg.1_Missense_Mutation_p.R179K|BBS1_uc001oik.1_Missense_Mutation_p.R200K|BBS1_uc001oil.1_Intron|ZDHHC24_uc001oim.1_RNA|ZDHHC24_uc009yrg.1_3'UTR|BBS1_uc010rph.1_5'Flank	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	276					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						TATATTCTGAGAAGGTAGCCA	0.552									Bardet-Biedl_syndrome				20	32					0	0	0.00229938	0	0
ACTN3	89	broad.mit.edu	37	11	66323701	66323702	+	Splice_Site	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:66323701_66323702GG>AA	uc001oio.1	+	8	822	c.804_splice	c.e8+1	p.Q268_splice	ACTN3_uc010rpi.1_Splice_Site	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3						focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						GGGCTGAGCAGGTAAGGCGGCC	0.599													22	33					0	0	6.4e-05	0	0
ADRBK1	156	broad.mit.edu	37	11	67047159	67047159	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:67047159G>A	uc009yrn.1	+	5	695	c.429G>A	c.(427-429)CCG>CCA	p.P143P	ADRBK1_uc009yrm.1_Silent_p.P143P	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	143	RGS.|N-terminal.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	AGGTGCCTCCGGATCTCTTCC	0.637													18	23					0	0	0.00074312	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74904478	74904478	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:74904478C>T	uc001owb.2	+	9	1678	c.1291C>T	c.(1291-1293)CTG>TTG	p.L431L	SLCO2B1_uc010rrq.1_Silent_p.L176L|SLCO2B1_uc010rrr.1_Silent_p.L287L|SLCO2B1_uc010rrs.1_Silent_p.L315L|SLCO2B1_uc001owc.2_Silent_p.L204L|SLCO2B1_uc001owd.2_Silent_p.L409L	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	431	Helical; Name=8; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GGGTGGCGTCCTGGTCAAGCG	0.632													21	26					0	0	0.00229938	0	0
MYO7A	4647	broad.mit.edu	37	11	76892447	76892447	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:76892447C>T	uc001oyb.2	+	23	2988	c.2716C>T	c.(2716-2718)CGT>TGT	p.R906C	MYO7A_uc010rsl.1_Missense_Mutation_p.R906C|MYO7A_uc010rsm.1_Missense_Mutation_p.R895C|MYO7A_uc001oyc.2_Missense_Mutation_p.R906C|MYO7A_uc001oyd.2_Missense_Mutation_p.R246C|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.R117C	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	906	Potential.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CCAGCTGGCTCGTGAGGACGC	0.652													5	4					0	0	0.000602214	0	0
CREBZF	58487	broad.mit.edu	37	11	85375599	85375599	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:85375599C>T	uc001pas.2	-	1	584	c.321G>A	c.(319-321)CTG>CTA	p.L107L	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	107					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				GGAGATCCGCCAGTTCCAGCC	0.697													47	50					0	0	0.000781405	0	0
PIWIL4	143689	broad.mit.edu	37	11	94300761	94300761	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:94300761C>T	uc001pfa.2	+	1	288	c.77C>T	c.(76-78)GCC>GTC	p.A26V	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_Intron	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	26					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CGCATCCAAGCCTCGCCATTG	0.572													12	9					0	0	0.00185496	0	0
MAML2	84441	broad.mit.edu	37	11	95826061	95826061	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:95826061G>A	uc001pfw.1	-	2	2419	c.1134C>T	c.(1132-1134)GGC>GGT	p.G378G		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	378					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				GCTGAGGAGAGCCTGAGGGGC	0.582			T	MECT1|CRTC3	salivary gland mucoepidermoid								9	14					0	0	0.000274275	0	0
CNTN5	53942	broad.mit.edu	37	11	100141950	100141950	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:100141950G>A	uc001pga.2	+	18	2630	c.2291G>A	c.(2290-2292)CGA>CAA	p.R764Q	CNTN5_uc001pfz.2_Missense_Mutation_p.R764Q|CNTN5_uc001pgb.2_Missense_Mutation_p.R690Q|CNTN5_uc010ruk.1_Missense_Mutation_p.R35Q	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	764	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ACCCCATCTCGAATGATCCGC	0.448													12	17					0	0	0.000978159	0	0
TRPC6	7225	broad.mit.edu	37	11	101374881	101374881	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:101374881C>T	uc001pgk.3	-	2	1244	c.819G>A	c.(817-819)AGG>AGA	p.R273R	TRPC6_uc009ywy.2_Silent_p.R273R|TRPC6_uc009ywz.1_Silent_p.R273R	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	273	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		AGGCATTAATCCTAGATCTGG	0.463													23	39					0	0	0.000586117	0	0
BIRC3	330	broad.mit.edu	37	11	102207520	102207520	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:102207520G>A	uc001pgx.2	+	9	1831	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	537					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		TATTCCCACAGAAGATGTTTC	0.269			T	MALT1	MALT								26	34					0	0	0.001512	0	0
CWF19L2	143884	broad.mit.edu	37	11	107299736	107299736	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:107299736G>A	uc010rvp.1	-	8	1252	c.1222C>T	c.(1222-1224)CCC>TCC	p.P408S	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	408							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TTCTTGGTGGGTTTTCTAAAA	0.418													30	11					0	0	0.00209593	0	0
SCN2B	6327	broad.mit.edu	37	11	118039345	118039345	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:118039345G>A	uc001psf.2	-	2	383	c.192C>T	c.(190-192)TCC>TCT	p.S64S		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	64	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		TCCAGTTCAGGGAGAACTGTT	0.587													67	30					0	0	0.000781405	0	0
ZNF202	7753	broad.mit.edu	37	11	123601466	123601466	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:123601466G>A	uc001pzd.1	-	4	531	c.131C>T	c.(130-132)ACC>ATC	p.T44I	ZNF202_uc001pzc.1_5'UTR|ZNF202_uc001pze.1_Missense_Mutation_p.T44I|ZNF202_uc001pzf.1_Missense_Mutation_p.T44I	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	44					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		CTGGTGGGAGGTTTCCAGCAC	0.532													25	12					0	0	0.000586117	0	0
OR10S1	219873	broad.mit.edu	37	11	123847640	123847640	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:123847640G>A	uc001pzm.1	-	1	759	c.759C>T	c.(757-759)TCC>TCT	p.S253S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAGTGCAGGGGGAGAAGGCCC	0.632													30	9					0	0	0.00209593	0	0
OR10G4	390264	broad.mit.edu	37	11	123886880	123886880	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:123886880T>G	uc010sac.1	+	1	599	c.599T>G	c.(598-600)GTG>GGG	p.V200G		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GTCATCTTTGTGGACATTGGG	0.552													36	22					0	0	0.00148497	0	0
OR8G2	26492	broad.mit.edu	37	11	124095622	124095622	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:124095622C>T	uc010saf.1	+	1	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	75						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TGTACTATTTCCTCAGTGGTC	0.463													35	15					0	0	0.000814825	0	0
BARX2	8538	broad.mit.edu	37	11	129306867	129306867	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:129306867C>T	uc001qfc.3	+	2	459	c.409C>T	c.(409-411)CGC>TGC	p.R137C		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	137	Homeobox.										0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCGCCGGAGTCGCACCATCTT	0.632													5	1					0	0	0.000602214	0	0
IGSF9B	22997	broad.mit.edu	37	11	133801030	133801030	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:133801030C>T	uc001qgx.3	-	11	1600	c.1369_splice	c.e11-1	p.V457_splice	IGSF9B_uc001qgy.1_Splice_Site_p.V299_splice	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B							integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GCTTCCCTACCTTGGTGAACA	0.637													17	35					0	0	0.00188189	0	0
SLC6A12	6539	broad.mit.edu	37	12	319086	319086	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:319086C>T	uc001qhz.2	-	4	610	c.67G>A	c.(67-69)GAG>AAG	p.E23K	SLC6A12_uc001qia.2_Missense_Mutation_p.E23K|SLC6A12_uc001qib.2_Missense_Mutation_p.E23K|SLC6A12_uc009zdh.1_Missense_Mutation_p.E23K|SLC6A12_uc009zdi.1_RNA	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	23	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			TCCAACTTCTCTCCCTCCTCG	0.617													24	36					0	0	0.000878237	0	0
PRMT8	56341	broad.mit.edu	37	12	3702313	3702313	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:3702313G>A	uc001qmf.2	+	10	1517	c.1150G>A	c.(1150-1152)GAA>AAA	p.E384K	PRMT8_uc009zed.2_Missense_Mutation_p.E375K|PRMT8_uc001qmg.2_Missense_Mutation_p.E198K|PRMT8_uc001qmh.2_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	384					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			ACAGCTGTGTGAAACATCTGT	0.522													21	4					0	0	0.000720815	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939701	6939701	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:6939701T>C	uc001qra.1	+	5	870	c.836T>C	c.(835-837)CTC>CCC	p.L279P	LEPREL2_uc001qqz.1_Missense_Mutation_p.L86P|LEPREL2_uc001qrb.1_Missense_Mutation_p.L86P	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	279					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CAGGGGGGCCTCTATGAGGCC	0.637													9	2					0	0	0.000274275	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183590	11183590	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:11183590G>A	uc001qzo.1	-	1	417	c.345C>T	c.(343-345)AAC>AAT	p.N115N	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	115	Helical; Name=3; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						GAAAAATAAGGTTGGAGAAAT	0.398													62	65					0	0	0.000781405	0	0
PRB4	5545	broad.mit.edu	37	12	11461597	11461597	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:11461597C>T	uc001qzf.1	-	3	354	c.320G>A	c.(319-321)GGA>GAA	p.G107E	PRB4_uc001qzt.2_Missense_Mutation_p.G107E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	149	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|6.		Missing (in allele M and allele S).			extracellular region				ovary(1)	1						GGACTGGTTTCCTCCTTGTGG	0.612										HNSCC(22;0.051)			120	31					0	0	0.000781405	0	0
GPR19	2842	broad.mit.edu	37	12	12815020	12815020	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:12815020G>A	uc001rar.3	-	2	556	c.363C>T	c.(361-363)TTC>TTT	p.F121F	GPR19_uc001raq.2_Silent_p.F121F	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	121	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		GGAGCAGGACGAAAGGCGTGC	0.522													39	11					0	0	0.00128727	0	0
KIAA1467	57613	broad.mit.edu	37	12	13219709	13219709	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:13219709C>T	uc001rbi.2	+	6	1011	c.988C>T	c.(988-990)CTG>TTG	p.L330L	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	330						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TGTCTACATCCTGTTTGGCTT	0.493													30	5					0	0	0.00058488	0	0
EMP1	2012	broad.mit.edu	37	12	13366698	13366698	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:13366698T>G	uc001rbr.2	+	4	506	c.259T>G	c.(259-261)TTC>GTC	p.F87V	EMP1_uc009zhy.2_Missense_Mutation_p.F20V|EMP1_uc010shr.1_Missense_Mutation_p.F87V	NM_001423	NP_001414	P54849	EMP1_HUMAN	epithelial membrane protein 1	87	Helical; (Potential).				cell growth|cell proliferation|epidermis development	integral to membrane|membrane fraction					0		Prostate(47;0.194)		BRCA - Breast invasive adenocarcinoma(232;0.153)		GTTCCAGCTCTTCACCATGGA	0.507													68	12					0	0	0.000781405	0	0
GRIN2B	2904	broad.mit.edu	37	12	13768519	13768519	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:13768519T>C	uc001rbt.2	-	6	1587	c.1408A>G	c.(1408-1410)AAA>GAA	p.K470E		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	470	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCACAGATTTAGAAATTTTC	0.398													145	27					0	0	0.000781405	0	0
GUCY2C	2984	broad.mit.edu	37	12	14836030	14836030	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:14836030G>A	uc001rcd.2	-	4	694	c.557C>T	c.(556-558)TCC>TTC	p.S186F	GUCY2C_uc009zhz.2_Missense_Mutation_p.S186F	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	186	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGTGCTCCAGGAATAAGTTTT	0.393													12	3					0	0	0.00244969	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18644400	18644400	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:18644400G>A	uc001rdt.2	+	19	2694	c.2578G>A	c.(2578-2580)GAA>AAA	p.E860K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E901K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E679K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	860					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ACTGAAGAAAGAAATTGGCAG	0.328													67	9					0	0	0.000781405	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891566	18891566	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:18891566C>T	uc001rdy.2	+	1	522	c.364C>T	c.(364-366)CTG>TTG	p.L122L	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	122					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				AGTTGTTCTTCTGTGCGCCTT	0.378													16	2					0	0	0.000566183	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891882	18891882	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:18891882G>A	uc001rdy.2	+	1	838	c.680G>A	c.(679-681)AGG>AAG	p.R227K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	227					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				AGTTTTGCAAGGCTTGTGGAA	0.403													16	5					0	0	0.000566183	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20858948	20858948	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:20858948G>A	uc001rej.3	+	5	692	c.337G>A	c.(337-339)GGA>AGA	p.G113R	SLCO1C1_uc010sii.1_Missense_Mutation_p.G113R|SLCO1C1_uc010sij.1_Missense_Mutation_p.G113R|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Missense_Mutation_p.G113R|SLCO1C1_uc010sik.1_5'UTR	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	113	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					AAAAATAATTGGAGCAGGGTG	0.383													123	28					0	0	0.000781405	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172218	21172218	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:21172218G>A	uc010sin.1	+	2	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	41						membrane	transporter activity				0						AGTTACTTTGGATCTAAACTA	0.313													21	6					0	0	0.00152264	0	0
LRMP	4033	broad.mit.edu	37	12	25232684	25232684	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:25232684G>A	uc001rgh.2	+	8	1265	c.231G>A	c.(229-231)ACG>ACA	p.T77T	LRMP_uc001rgg.1_RNA|LRMP_uc010sja.1_Silent_p.T77T|LRMP_uc010sjb.1_Silent_p.T24T|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Silent_p.T77T|LRMP_uc010sjd.1_Silent_p.T24T	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	133	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					CTTCTCCCACGATAGAGGCCC	0.403													30	8					0	0	0.00106085	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30883181	30883181	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:30883181G>A	uc001rji.1	-	7	1847	c.1096C>T	c.(1096-1098)CCA>TCA	p.P366S	CAPRIN2_uc001rjf.1_Missense_Mutation_p.P163S|CAPRIN2_uc001rjg.1_Missense_Mutation_p.P33S|CAPRIN2_uc001rjh.1_Missense_Mutation_p.P366S|CAPRIN2_uc001rjj.1_Missense_Mutation_p.P33S|CAPRIN2_uc001rjk.3_Missense_Mutation_p.P366S|CAPRIN2_uc001rjl.3_Missense_Mutation_p.P366S|CAPRIN2_uc001rjm.1_Missense_Mutation_p.P33S|CAPRIN2_uc001rjn.1_Missense_Mutation_p.P33S	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	366					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					ACCTCTTGTGGTTGTATCTCT	0.274													32	5					0	0	0.000692331	0	0
PKP2	5318	broad.mit.edu	37	12	33030884	33030884	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:33030884C>T	uc001rlj.3	-	3	1045	c.930G>A	c.(928-930)GTG>GTA	p.V310V	PKP2_uc001rlk.3_Silent_p.V310V|PKP2_uc010skj.1_Silent_p.V310V	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	310					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CGCTGGAATCCACGGCGACAC	0.637													27	2					0	0	0.001512	0	0
CNTN1	1272	broad.mit.edu	37	12	41318411	41318411	+	Silent	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:41318411G>C	uc001rmm.1	+	6	566	c.453G>C	c.(451-453)GGG>GGC	p.G151G	CNTN1_uc009zjy.1_Silent_p.G151G|CNTN1_uc001rmn.1_Silent_p.G140G|CNTN1_uc001rmo.2_Silent_p.G151G	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	151	Ig-like C2-type 2.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TAAAAGAAGGGAAAGGAATGG	0.403													6	0					0	0	0.00198382	0	0
FAM113B	91523	broad.mit.edu	37	12	47629825	47629825	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:47629825C>T	uc001rpn.2	+	4	1710	c.979C>T	c.(979-981)CAC>TAC	p.H327Y	FAM113B_uc001rpq.2_Missense_Mutation_p.H327Y	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	327	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					cATTCTCCATCACCAGGGAAT	0.284													70	14					0	0	0.000781405	0	0
ADCY6	112	broad.mit.edu	37	12	49165664	49165664	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:49165664G>A	uc001rsh.3	-	18	3540	c.2880C>T	c.(2878-2880)TTC>TTT	p.F960F	ADCY6_uc001rsj.3_Silent_p.F960F|ADCY6_uc001rsi.3_Silent_p.F907F|ADCY6_uc010slw.1_Silent_p.F191F	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	960	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						CCCGGGCCAGGAAGTGGGCCG	0.557													42	6					0	0	0.00285205	0	0
AQP6	363	broad.mit.edu	37	12	50368136	50368136	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:50368136G>A	uc001rvr.1	+	2	769	c.432G>A	c.(430-432)GCG>GCA	p.A144A	AQP6_uc001rvp.1_5'UTR|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	144	Helical; (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						CTGGCCAGGCGGTGGCAGTGG	0.622											OREG0021809	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	11					0	0	0.000781405	0	0
SP7	121340	broad.mit.edu	37	12	53722750	53722750	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:53722750C>T	uc001sct.2	-	2	583	c.476G>A	c.(475-477)TGG>TAG	p.W159*	SP7_uc001scu.2_Nonsense_Mutation_p.W141*|SP7_uc001scv.2_Nonsense_Mutation_p.W159*	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGCATATCCCACCATGGAGT	0.602													20	5					0	0	0.000958276	0	0
MAP3K12	7786	broad.mit.edu	37	12	53879190	53879190	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:53879190C>T	uc001sdm.1	-	6	890	c.792G>A	c.(790-792)AAG>AAA	p.K264K	MAP3K12_uc001sdn.1_Silent_p.K297K	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	264	Protein kinase.				histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						TCTTGGTGCTCTTGTCACTCA	0.517													155	17					0	0	0.000781405	0	0
GTSF1	121355	broad.mit.edu	37	12	54856432	54856432	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:54856432C>T	uc001sgb.2	-	5	408	c.322G>A	c.(322-324)GAT>AAT	p.D108N		NM_144594	NP_653195	Q8WW33	GTSF1_HUMAN	gametocyte specific factor 1	108							metal ion binding				0		Myeloproliferative disorder(1001;0.00452)				TCACCTTTATCCCAGTCTTCA	0.423													147	31					0	0	0.000781405	0	0
HSD17B6	8630	broad.mit.edu	37	12	57178749	57178749	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:57178749G>A	uc001smg.1	+	4	795	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_003725	NP_003716	O14756	H17B6_HUMAN	hydroxysteroid (17-beta) dehydrogenase 6	229					androgen biosynthetic process|androgen catabolic process	early endosome membrane|endoplasmic reticulum|microsome	binding|electron carrier activity|estradiol 17-beta-dehydrogenase activity|retinol dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			upper_aerodigestive_tract(1)|pancreas(1)	2					Succinic acid(DB00139)	AAGTTGGAAAGAAGCCCCCAA	0.403													85	14					0	0	0.000781405	0	0
HELB	92797	broad.mit.edu	37	12	66725067	66725067	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:66725067C>T	uc001sti.2	+	12	2832	c.2804C>T	c.(2803-2805)GCC>GTC	p.A935V	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	935					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		CTCCGGAATGCCATTATGAAA	0.542													53	6					0	0	0.000781405	0	0
IFNG	3458	broad.mit.edu	37	12	68551714	68551714	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:68551714G>A	uc001stw.1	-	3	471	c.345C>T	c.(343-345)TTC>TTT	p.F115F		NM_000619	NP_000610	P01579	IFNG_HUMAN	interferon, gamma precursor	115					cell cycle arrest|interferon-gamma-mediated signaling pathway|negative regulation of interleukin-17 production|negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of metanephric nephron tubule epithelial cell differentiation|negative regulation of smooth muscle cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity|positive regulation of fructose 1,6-bisphosphate metabolic process|positive regulation of interleukin-12 production|positive regulation of interleukin-23 production|positive regulation of killing of cells of other organism|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mesenchymal cell proliferation|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of smooth muscle cell apoptosis|positive regulation of tumor necrosis factor (ligand) superfamily member 11 production|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|regulation of insulin secretion|regulation of interferon-gamma-mediated signaling pathway|response to virus	extracellular space	cytokine activity|interferon-gamma receptor binding				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000829)	Glucosamine(DB01296)|Interferon gamma-1b(DB00033)|Simvastatin(DB00641)	TCAGCTTTTCGAAGTCATCTC	0.368													69	15					0	0	0.000781405	0	0
BEST3	144453	broad.mit.edu	37	12	70091527	70091527	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:70091527G>A	uc001svg.2	-	2	279	c.52C>T	c.(52-54)CAT>TAT	p.H18Y	BEST3_uc001svd.1_Missense_Mutation_p.H18Y|BEST3_uc001sve.1_Intron|BEST3_uc010stm.1_Intron|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_Intron	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	18	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			AGTAACCTATGAAATCCAAAA	0.348													116	26					0	0	0.000781405	0	0
VEZT	55591	broad.mit.edu	37	12	95694281	95694281	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:95694281G>A	uc001tdz.2	+	12	2277	c.2172G>A	c.(2170-2172)CAG>CAA	p.Q724Q	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Silent_p.Q89Q|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	724						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						CCATTAAGCAGAGGCTGGCAC	0.527													37	9					0	0	0.000814825	0	0
NR1H4	9971	broad.mit.edu	37	12	100926345	100926345	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:100926345G>A	uc001tht.1	+	3	613	c.585G>A	c.(583-585)AGG>AGA	p.R195R	NR1H4_uc001thp.1_Silent_p.R185R|NR1H4_uc001thq.1_Silent_p.R185R|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Silent_p.R185R|NR1H4_uc010svk.1_Intron|NR1H4_uc001ths.1_Silent_p.R195R	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	195	NR C4-type.|Nuclear receptor.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GTCGACTAAGGAAATGCAAAG	0.403													63	10					0	0	0.000781405	0	0
ATXN2	6311	broad.mit.edu	37	12	111990746	111990746	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:111990746A>G	uc001tsj.2	-	4	1026	c.864T>C	c.(862-864)GGT>GGC	p.G288G	ATXN2_uc001tsh.2_Silent_p.G23G|ATXN2_uc001tsi.2_Intron|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Silent_p.G23G	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	288					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						CTTCATATATACCTCCATTTT	0.294													36	13					0	0	0.00222228	0	0
RNF10	9921	broad.mit.edu	37	12	121000873	121000873	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:121000873G>A	uc001typ.3	+	8	1737	c.1254G>A	c.(1252-1254)AAG>AAA	p.K418K	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.K324K	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	418					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AACCCAGGAAGGTTAGTGTGT	0.512													49	9					0	0	0.000781405	0	0
DDX55	57696	broad.mit.edu	37	12	124101089	124101090	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:124101089_124101090CG>AT	uc001ufi.2	+	10	1012_1013	c.988_989CG>AT	c.(988-990)CGG>ATG	p.R330M	DDX55_uc001ufh.2_Missense_Mutation_p.R183M|DDX55_uc001ufj.1_Missense_Mutation_p.R183M|DDX55_uc001ufk.2_Missense_Mutation_p.R183M|DDX55_uc001ufl.2_5'Flank	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	330	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		TGTGATGGCCCGGGGAATTGAT	0.475													6	152					0	0	6.4e-05	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558485	129558485	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:129558485C>T	uc009zyl.1	-	9	3563	c.3235G>A	c.(3235-3237)GAT>AAT	p.D1079N	TMEM132D_uc001uia.2_Missense_Mutation_p.D617N	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1079	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GGGTCCAGATCCTGGCAGACC	0.507													94	14					0	0	0.000781405	0	0
POLE	5426	broad.mit.edu	37	12	133225520	133225520	+	Missense_Mutation	SNP	G	A	A	rs5744904		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:133225520G>A	uc001uks.1	-	32	4188	c.4144C>T	c.(4144-4146)CGC>TGC	p.R1382C	POLE_uc001ukr.1_Missense_Mutation_p.R186C|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.R1355C	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1382					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		CCTACCTTGCGATACGAAGCA	0.602								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					55	9					0	0	0.000781405	0	0
LOC284232	284232	broad.mit.edu	37	13	19409643	19409643	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:19409643G>A	uc010tcj.1	-	1		c.36467C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AAGCCTCTTTGGATATTAATT	0.328													36	52					0	0	0.000814825	0	0
TPTE2	93492	broad.mit.edu	37	13	20006616	20006616	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:20006616G>A	uc001umd.2	-	17	1430	c.1219C>T	c.(1219-1221)CGT>TGT	p.R407C	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.R296C|TPTE2_uc001ume.2_Missense_Mutation_p.R330C|TPTE2_uc009zzm.2_Missense_Mutation_p.R78C|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.R78C	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	407	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		CACTTACCACGAATCGAATAA	0.388													11	21					0	0	0.000673444	0	0
TPTE2	93492	broad.mit.edu	37	13	20048054	20048054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:20048054C>T	uc001umd.2	-	7	603	c.392G>A	c.(391-393)GGG>GAG	p.G131E	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Missense_Mutation_p.G94E|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	131	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TCAAACTTACCCTTCTACAAA	0.224													12	21					0	0	0.00136819	0	0
GJA3	2700	broad.mit.edu	37	13	20716951	20716951	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:20716951G>A	uc001umx.1	-	2	649	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_021954	NP_068773	Q9Y6H8	CXA3_HUMAN	connexin 46	159	Helical; (Potential).				cell-cell signaling|visual perception	connexon complex|integral to membrane		p.F159F(1)		pancreas(1)	1		all_cancers(29;1.4e-21)|all_epithelial(30;8.75e-19)|all_lung(29;1.28e-17)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000554)|Epithelial(112;0.000872)|OV - Ovarian serous cystadenocarcinoma(117;0.0105)|Lung(94;0.0251)|LUSC - Lung squamous cell carcinoma(192;0.0784)		AGCCCACCTCGAACAGCGTCT	0.652													17	21					0	0	0.000566183	0	0
FGF9	2254	broad.mit.edu	37	13	22275499	22275499	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:22275499C>T	uc001uog.2	+	3	1389	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	184					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		ACCAGAAATTCACACATTTTT	0.433													12	29					0	0	0.00136819	0	0
PARP4	143	broad.mit.edu	37	13	25077796	25077796	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:25077796G>A	uc001upl.2	-	2	225	c.119C>T	c.(118-120)TCG>TTG	p.S40L	PARP4_uc010tdc.1_Missense_Mutation_p.S40L	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	40	BRCT.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AGGATTTAACGAAAAGGAAAA	0.383													27	55					0	0	0.00127121	0	0
LOC374491	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	G	G	rs3874227	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:25161397C>G	uc001upm.2	+	8		c.921C>G			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TGAAACATCTCTACAACTGGA	0.343													3	35					0	0	6.4e-05	0	0
RNF17	56163	broad.mit.edu	37	13	25418818	25418818	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:25418818G>A	uc001upr.2	+	21	2901	c.2860G>A	c.(2860-2862)GAA>AAA	p.E954K	RNF17_uc010tdd.1_Missense_Mutation_p.E813K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E954K|RNF17_uc001ups.2_Missense_Mutation_p.E893K|RNF17_uc010aac.2_Missense_Mutation_p.E152K|RNF17_uc010aad.2_Missense_Mutation_p.E6K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	954					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGCTGCTTATGAAAACTCAAA	0.279													37	47					0	0	0.00170553	0	0
MTMR6	9107	broad.mit.edu	37	13	25826045	25826045	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:25826045G>A	uc001uqf.3	-	12	1743	c.1424C>T	c.(1423-1425)TCC>TTC	p.S475F	MTMR6_uc001uqe.1_Missense_Mutation_p.S475F	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	475	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity	p.S475F(1)		ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		GTGAGATTCGGAACTGTAGAG	0.328													107	121					0	0	0.000781405	0	0
FLT3	2322	broad.mit.edu	37	13	28622539	28622539	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:28622539C>T	uc001urw.2	-	9	1160	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.E360K	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	360	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGGTCAATTTCATAATCTTCA	0.323			Mis|O		AML|ALL								29	27					0	0	0.00106085	0	0
BRCA2	675	broad.mit.edu	37	13	32903615	32903615	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:32903615C>T	uc001uub.1	+	8	894	c.667C>T	c.(667-669)CAT>TAT	p.H223Y	BRCA2_uc001uua.1_Missense_Mutation_p.H100Y	NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	223					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TGTATTTCCTCATGATACTAC	0.259			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			21	17					0	0	0.00188189	0	0
STARD13	90627	broad.mit.edu	37	13	33703582	33703582	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:33703582G>A	uc001uuw.2	-	5	1358	c.1232C>T	c.(1231-1233)TCT>TTT	p.S411F	STARD13_uc001uuu.2_Missense_Mutation_p.S403F|STARD13_uc001uuv.2_Missense_Mutation_p.S293F|STARD13_uc001uux.2_Missense_Mutation_p.S376F|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.S396F	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	411					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GCTTTCAATAGAAAGTGCCTT	0.527													22	27					0	0	0.00188189	0	0
DGKH	160851	broad.mit.edu	37	13	42729831	42729831	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:42729831C>T	uc001uyl.1	+	5	539	c.518C>T	c.(517-519)TCA>TTA	p.S173L	DGKH_uc010tfh.1_Missense_Mutation_p.S173L|DGKH_uc001uym.1_Missense_Mutation_p.S173L|DGKH_uc010tfi.1_Nonsense_Mutation_p.Q6*|DGKH_uc010tfj.1_Missense_Mutation_p.S28L|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.S28L|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	173					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GAACATTTCTCAGGGATGCAC	0.522													44	47					0	0	0.0025221	0	0
TNFSF11	8600	broad.mit.edu	37	13	43180868	43180868	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:43180868G>A	uc001uyu.2	+	5	917	c.768G>A	c.(766-768)ATG>ATA	p.M256I	TNFSF11_uc001uyt.2_Missense_Mutation_p.M183I	NM_003701	NP_003692	O14788	TNF11_HUMAN	tumor necrosis factor ligand superfamily, member	256	Extracellular (Potential).				immune response|monocyte chemotaxis|osteoclast differentiation|positive regulation of bone resorption|positive regulation of corticotropin-releasing hormone secretion|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of homotypic cell-cell adhesion|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation	cytoplasm|extracellular space|integral to plasma membrane	cytokine activity|receptor activity|tumor necrosis factor receptor binding				0		Lung NSC(96;1.11e-05)|Breast(139;0.00868)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000249)|GBM - Glioblastoma multiforme(144;0.00119)|BRCA - Breast invasive adenocarcinoma(63;0.073)		ATACCCTGATGAAAGGAGGAA	0.398													28	48					0	0	0.00127121	0	0
NUFIP1	26747	broad.mit.edu	37	13	45563205	45563205	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:45563205A>G	uc001uzp.2	-	1	409	c.367T>C	c.(367-369)TCT>CCT	p.S123P	KIAA1704_uc010tfo.1_5'Flank|KIAA1704_uc001uzq.2_5'Flank|KIAA1704_uc001uzr.1_5'Flank|KIAA1704_uc001uzs.2_5'Flank	NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	123					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		CTATCAGAAGACTGTCTCCAA	0.537													14	25					0	0	0.00074312	0	0
KIAA1704	55425	broad.mit.edu	37	13	45594490	45594491	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:45594490_45594491CC>TT	uc001uzq.2	+	7	834_835	c.731_732CC>TT	c.(730-732)TCC>TTT	p.S244F	KIAA1704_uc010tfo.1_RNA|KIAA1704_uc001uzr.1_Missense_Mutation_p.S244F|KIAA1704_uc001uzs.2_Missense_Mutation_p.S121F|KIAA1704_uc001uzt.2_Missense_Mutation_p.S95F	NM_018559	NP_061029	Q8IXQ4	K1704_HUMAN	hypothetical protein LOC55425	244										pancreas(1)|skin(1)	2		Lung NSC(96;0.00143)|Prostate(109;0.0137)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000313)|BRCA - Breast invasive adenocarcinoma(63;0.126)		AGGAAGTCATCCAGTAAGAAAG	0.292													63	97					0	0	6.4e-05	0	0
C13orf18	80183	broad.mit.edu	37	13	46917580	46917580	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:46917580C>T	uc010acl.2	-	15	2534	c.1929G>A	c.(1927-1929)CGG>CGA	p.R643R	C13orf18_uc010tfy.1_Silent_p.R166R|C13orf18_uc001vbf.3_Silent_p.R576R|C13orf18_uc001vbg.3_Silent_p.R371R|C13orf18_uc010tfz.1_Silent_p.R486R|C13orf18_uc010acm.2_Silent_p.R508R|C13orf18_uc010acn.2_Silent_p.R428R|C13orf18_uc001vbe.3_Missense_Mutation_p.G592D|C13orf18_uc001vbh.3_Silent_p.R643R|C13orf18_uc001vbi.3_Silent_p.R486R	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	643											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		TCCTCGCACACCGGGGGCACT	0.517													7	19					0	0	0.000157383	0	0
CCDC70	83446	broad.mit.edu	37	13	52440032	52440032	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:52440032G>A	uc001vfu.3	+	2	814	c.518G>A	c.(517-519)GGG>GAG	p.G173E	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	173						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		CTCCTTGAGGGGGAGAAAGCC	0.547													37	64					0	0	0.00148497	0	0
GPR180	160897	broad.mit.edu	37	13	95273347	95273347	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:95273347C>T	uc001vly.2	+	6	830	c.752C>T	c.(751-753)TCC>TTC	p.S251F	GPR180_uc001vlz.2_Missense_Mutation_p.S150F|GPR180_uc010afi.2_Missense_Mutation_p.S12F	NM_180989	NP_851320	Q86V85	GP180_HUMAN	G protein-coupled receptor 180 precursor	251	Helical; (Potential).					integral to membrane				breast(1)	1	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					GACATCGCTTCCCAAATTCAG	0.358													32	45					0	0	0.000814825	0	0
NALCN	259232	broad.mit.edu	37	13	101717857	101717857	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:101717857C>T	uc001vox.1	-	40	4692	c.4503G>A	c.(4501-4503)CTG>CTA	p.L1501L		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1501	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGTCCACCTCCAGCCTCCCAC	0.577													26	30					0	0	0.000586117	0	0
COL4A1	1282	broad.mit.edu	37	13	110822958	110822958	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr13:110822958G>A	uc001vqw.3	-	42	3800	c.3678C>T	c.(3676-3678)TCC>TCT	p.S1226S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1226	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CATGGCCTGGGGATCCCGGTA	0.672													8	16					0	0	0.000442599	0	0
OR4N2	390429	broad.mit.edu	37	14	20295867	20295867	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20295867C>T	uc010tkv.1	+	1	260	c.260C>T	c.(259-261)TCT>TTT	p.S87F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GACTTCCTCTCTGCGAAGAAG	0.522													32	107					0	0	0.00058488	0	0
OR4K2	390431	broad.mit.edu	37	14	20344554	20344554	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20344554G>A	uc001vwh.1	+	1	128	c.128G>A	c.(127-129)AGC>AAC	p.S43N		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGGGTAACAGCCTCATAGTC	0.398													43	138					0	0	0.00222228	0	0
OR4K2	390431	broad.mit.edu	37	14	20344685	20344685	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20344685A>C	uc001vwh.1	+	1	259	c.259A>C	c.(259-261)ACA>CCA	p.T87P		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGATTACCTAACAGGTCACAA	0.413													28	103					0	0	0.00106085	0	0
OR4K5	79317	broad.mit.edu	37	14	20389662	20389662	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20389662G>A	uc010tkw.1	+	1	897	c.897G>A	c.(895-897)AGG>AGA	p.R299R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCCGTAAGGAAAATTGTGA	0.383													16	44					0	0	0.000566183	0	0
OR4K17	390436	broad.mit.edu	37	14	20586390	20586390	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20586390C>T	uc001vwo.1	+	1	825	c.825C>T	c.(823-825)ATC>ATT	p.I275I		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTGCTCACATCACAGTGGTGA	0.428													9	11					0	0	0.000442599	0	0
TEP1	7011	broad.mit.edu	37	14	20873656	20873656	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:20873656T>C	uc001vxe.2	-	4	864	c.824A>G	c.(823-825)GAA>GGA	p.E275G	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.E275G	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	275	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		ACGACAGATTTCAAAAATGGC	0.502													21	26					0	0	0.00121646	0	0
Unknown	0	broad.mit.edu	37	14	23020935	23020935	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:23020935G>A	uc001wcx.3	+	7		c.1246G>A			uc001wdv.3_3'UTR|uc001wec.2_3'UTR|uc001wee.3_3'UTR|uc001wei.2_3'UTR|uc001wej.2_3'UTR|uc001wek.2_3'UTR|uc001wel.2_3'UTR|uc001wem.3_3'UTR|uc001wep.2_3'UTR|uc001weq.2_3'UTR|uc001wer.2_RNA|uc001weu.2_3'UTR|uc001wev.2_3'UTR|uc001wew.2_3'UTR|uc001wfe.2_3'UTR|uc001wfk.2_3'UTR|uc010ajy.1_3'UTR|uc001wfn.2_3'UTR|uc001wfp.2_3'UTR|uc001wfx.2_3'UTR|uc001wgd.2_3'UTR|uc001wge.3_3'UTR|uc010tmx.1_3'UTR|uc001wgh.2_3'UTR|uc001wgk.2_3'UTR					Homo sapiens mRNA for T cell receptor alpha variable 13, partial cds, clone: SEB 7.																		ATGTTGTGAGGGGTTTATTTT	0.468													10	21					0	0	0.000308642	0	0
MYH6	4624	broad.mit.edu	37	14	23862632	23862632	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:23862632G>A	uc001wjv.2	-	23	3091	c.3024C>T	c.(3022-3024)GCC>GCT	p.A1008A		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1008	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GGTCATCCAGGGCCTGCTGAT	0.517													66	82					0	0	0.000781405	0	0
MYH7	4625	broad.mit.edu	37	14	23886133	23886133	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:23886133G>A	uc001wjx.2	-	33	4694	c.4588C>T	c.(4588-4590)CGA>TGA	p.R1530*		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1530	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		AGCTGCTTTCGGACCTTCTCC	0.602													34	38					0	0	0.00058488	0	0
DCAF11	80344	broad.mit.edu	37	14	24587638	24587638	+	Missense_Mutation	SNP	C	T	T	rs151306695	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:24587638C>T	uc001wlv.2	+	7	899	c.619C>T	c.(619-621)CGT>TGT	p.R207C	DCAF11_uc001wlw.2_Missense_Mutation_p.R207C|DCAF11_uc001wlz.2_Missense_Mutation_p.R107C|DCAF11_uc001wly.2_Missense_Mutation_p.R163C|DCAF11_uc001wme.2_Missense_Mutation_p.R167C|DCAF11_uc010tny.1_Missense_Mutation_p.R74C|DCAF11_uc001wmd.2_Missense_Mutation_p.R207C|DCAF11_uc001wmc.2_Missense_Mutation_p.R107C|DCAF11_uc001wmb.3_Missense_Mutation_p.R181C|DCAF11_uc001wma.3_Missense_Mutation_p.R207C	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	207	WD 1.					CUL4 RING ubiquitin ligase complex	protein binding				0						TGGCCGTTTCCGTAAATTCAA	0.488													69	68					0	0	0.000781405	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884778	24884778	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:24884778C>T	uc001wpf.3	+	9	4141	c.3823C>T	c.(3823-3825)CTC>TTC	p.L1275F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1275					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						ATTGGCCCTCCTCCAGGGCCT	0.637													38	29					0	0	0.00148497	0	0
CMA1	1215	broad.mit.edu	37	14	24976598	24976598	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:24976598C>T	uc001wpp.1	-	2	203	c.173G>A	c.(172-174)CGG>CAG	p.R58Q	CMA1_uc010alx.1_Intron	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	58	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		CACAAAGTTCCGTCTTATAAG	0.478													35	36					0	0	0.00195071	0	0
FOXG1	2290	broad.mit.edu	37	14	29237249	29237249	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:29237249G>A	uc001wqe.2	+	1	963	c.764G>A	c.(763-765)TGG>TAG	p.W255*		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	255	Fork-head.				axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GGCAACTACTGGATGCTGGAC	0.657													11	24					0	0	0.000978159	0	0
SSTR1	6751	broad.mit.edu	37	14	38679115	38679115	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:38679115C>T	uc001wul.1	+	3	1138	c.521C>T	c.(520-522)GCC>GTC	p.A174V	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	174	Cytoplasmic (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	CCCACCGTGGCCAAGGTAGTA	0.642													20	21					0	0	0.00152264	0	0
MIA2	117153	broad.mit.edu	37	14	39717065	39717065	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:39717065G>A	uc001wux.2	+	4	1481	c.1287G>A	c.(1285-1287)ACG>ACA	p.T429T	MIA2_uc010amy.1_Silent_p.T360T	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	429						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		AAATAGAAACGATAAAAATTA	0.323													33	48					0	0	0.00058488	0	0
MIA2	117153	broad.mit.edu	37	14	39722131	39722131	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:39722131G>A	uc001wux.2	+	5	1941	c.1747G>A	c.(1747-1749)GAT>AAT	p.D583N		NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	Error:Variant_position_missing_in_Q96PC5_after_alignment						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GGTTTCAACTGATAACTCTTT	0.358													8	13					0	0	0.000157383	0	0
LRFN5	145581	broad.mit.edu	37	14	42356439	42356439	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:42356439C>T	uc001wvm.2	+	3	1809	c.611C>T	c.(610-612)TCA>TTA	p.S204L	LRFN5_uc010ana.2_Missense_Mutation_p.S204L	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	204	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GATGTGACATCAAATAAATTG	0.418										HNSCC(30;0.082)			15	20					0	0	0.00244969	0	0
FANCM	57697	broad.mit.edu	37	14	45605493	45605493	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:45605493A>G	uc001wwd.3	+	1	358	c.259A>G	c.(259-261)ACC>GCC	p.T87A	FANCM_uc001wwc.2_Missense_Mutation_p.T87A|FANCM_uc010anf.2_Missense_Mutation_p.T87A|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	87					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GATTTACCCTACCAATTGCCC	0.577								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				12	44					0	0	0.00185496	0	0
POLE2	5427	broad.mit.edu	37	14	50131859	50131859	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:50131859G>A	uc001wwu.2	-	8	613	c.599C>T	c.(598-600)CCT>CTT	p.P200L	SDCCAG1_uc010anj.1_Intron|POLE2_uc010ann.2_5'Flank|POLE2_uc001wwv.2_RNA|POLE2_uc010ano.2_5'Flank	NM_002692	NP_002683	P56282	DPOE2_HUMAN	DNA-directed DNA polymerase epsilon 2	200					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity			ovary(1)|skin(1)	2	all_epithelial(31;0.0021)|Breast(41;0.0124)					TGTTCCAGTAGGATCTTCCAG	0.279													15	22					0	0	0.00121646	0	0
DLGAP5	9787	broad.mit.edu	37	14	55637496	55637496	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:55637496G>A	uc001xbs.2	-	11	1528	c.1311C>T	c.(1309-1311)CTC>CTT	p.L437L	DLGAP5_uc001xbt.2_Silent_p.L437L	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	437					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						TTTCTGACTGGAGGATATTTC	0.338													35	45					0	0	0.00058488	0	0
C14orf39	317761	broad.mit.edu	37	14	60923639	60923639	+	Missense_Mutation	SNP	C	T	T	rs147627198		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:60923639C>T	uc001xez.3	-	15	1464	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	C14orf39_uc010apo.2_Missense_Mutation_p.E163K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	452								p.E452K(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCCTACATTTCGAACGGGGGG	0.318													20	29					0	0	0.00121646	0	0
SYT16	83851	broad.mit.edu	37	14	62463105	62463105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:62463105G>A	uc001xfu.1	+	1	565	c.368G>A	c.(367-369)TGG>TAG	p.W123*	SYT16_uc010tsd.1_Nonsense_Mutation_p.W123*	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	123										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ATGTCCCAGTGGCCCAATTGG	0.463													9	13					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	14	66479727	66479727	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:66479727C>T	uc001xit.2	-	1	906	c.781G>A	c.(781-783)GAA>AAA	p.E261K						SubName: Full=Nuclease sensitive element binding protein-1;																		CCTTGATTTTCTTTATCTTCT	0.522													4	13					0	0	0.00198382	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712962	70712962	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:70712962G>A	uc010ttg.1	-	1	1557	c.906C>T	c.(904-906)GAC>GAT	p.D302D		NR_003951				SubName: Full=ADAM21-like protein;												0						ATTCTGGAAGGTCACATTCAT	0.483													16	15					0	0	0.00074312	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199751	71199751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:71199751G>A	uc001xmm.2	-	11	2335	c.2335C>T	c.(2335-2337)CCC>TCC	p.P779S	MAP3K9_uc010ttk.1_Missense_Mutation_p.P507S|MAP3K9_uc001xmk.2_Missense_Mutation_p.P512S|MAP3K9_uc001xml.2_Missense_Mutation_p.P793S	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	779					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TCCTCCAGGGGAAGCAGCTGG	0.652													20	38					0	0	0.000586117	0	0
LTBP2	4053	broad.mit.edu	37	14	74969359	74969359	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:74969359G>A	uc001xqa.2	-	34	5554	c.5167C>T	c.(5167-5169)CCA>TCA	p.P1723S		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1723					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CACAGACCTGGATGGCTGGCC	0.582													21	41					0	0	0.00152264	0	0
NEK9	91754	broad.mit.edu	37	14	75574166	75574166	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:75574166G>A	uc001xrl.2	-	11	1361	c.1207C>T	c.(1207-1209)CAT>TAT	p.H403Y	NEK9_uc001xrk.2_5'UTR	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	403	RCC1 1.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		AGCTGACCATGGAGTTTAGTG	0.358													27	30					0	0	0.00127121	0	0
TMEM63C	57156	broad.mit.edu	37	14	77719684	77719684	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:77719684G>A	uc001xtf.2	+	23	2397	c.2185G>A	c.(2185-2187)GAG>AAG	p.E729K	TMEM63C_uc010asq.1_Missense_Mutation_p.E729K	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	729						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GTTTGACATGGAGCCAAGCAG	0.612													9	9					0	0	0.00136819	0	0
NRXN3	9369	broad.mit.edu	37	14	79432563	79432563	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:79432563G>A	uc001xun.2	+	9	1963	c.1472G>A	c.(1471-1473)GGA>GAA	p.G491E	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.G616E	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	864	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCTCGTTTTGGACTGAGGAAC	0.468													24	32					0	0	0.000586117	0	0
C14orf145	145508	broad.mit.edu	37	14	81251542	81251542	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:81251542G>A	uc001xux.2	-	14	2079	c.1908C>T	c.(1906-1908)TCC>TCT	p.S636S	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	636	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		GGTCCTTGATGGACTCTTGCA	0.478													31	48					0	0	0.00178596	0	0
FOXN3	1112	broad.mit.edu	37	14	89629234	89629234	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:89629234C>T	uc001xxo.3	-	7	1134	c.997G>A	c.(997-999)GAG>AAG	p.E333K	FOXN3_uc001xxn.3_Missense_Mutation_p.E311K|FOXN3_uc010atk.2_Missense_Mutation_p.E311K	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	333					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						TTGTGATCCTCCTTGGGGTCT	0.627													8	16					0	0	0.000274275	0	0
FOXN3	1112	broad.mit.edu	37	14	89878539	89878539	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:89878539G>A	uc001xxo.3	-	2	419	c.282C>T	c.(280-282)ACC>ACT	p.T94T	FOXN3_uc001xxn.3_Silent_p.T94T|FOXN3_uc010atk.2_Silent_p.T94T|FOXN3_uc001xxp.2_Silent_p.T94T	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	94					DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						GGGATGGGGGGGTGTCATCGT	0.592													26	31					0	0	0.000878237	0	0
RPS6KA5	9252	broad.mit.edu	37	14	91413858	91413858	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:91413858G>A	uc001xys.2	-	4	646	c.431C>T	c.(430-432)TCT>TTT	p.S144F	RPS6KA5_uc010twi.1_Missense_Mutation_p.S65F|RPS6KA5_uc001xyt.2_Missense_Mutation_p.S144F|RPS6KA5_uc010att.1_RNA	NM_004755	NP_004746	O75582	KS6A5_HUMAN	ribosomal protein S6 kinase, polypeptide 5	144	Protein kinase 1.				axon guidance|epidermal growth factor receptor signaling pathway|histone phosphorylation|innate immune response|interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1		all_cancers(154;0.0148)|Melanoma(154;0.099)|all_epithelial(191;0.146)		Epithelial(152;0.182)|BRCA - Breast invasive adenocarcinoma(234;0.201)		CTCTCTTTGAGAAAGATGAGT	0.348													39	67					0	0	0.00128727	0	0
TC2N	123036	broad.mit.edu	37	14	92268723	92268723	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:92268723G>A	uc001xzu.3	-	4	535	c.344C>T	c.(343-345)TCC>TTC	p.S115F	TC2N_uc001xzt.3_Missense_Mutation_p.S115F|TC2N_uc010auc.2_Missense_Mutation_p.S115F|TC2N_uc001xzv.3_Missense_Mutation_p.S115F	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	115						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		GGATGAACTGGAAAGTTCTAC	0.413													11	31					0	0	0.00244969	0	0
KIAA1409	57578	broad.mit.edu	37	14	94084570	94084570	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:94084570C>T	uc001ybv.1	+	27	3875	c.3792C>T	c.(3790-3792)ATC>ATT	p.I1264I	KIAA1409_uc001ybs.1_Silent_p.I1242I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1419						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCAGCAAGATCCTGCTGCATC	0.438													31	25					0	0	0.000814825	0	0
ATG2B	55102	broad.mit.edu	37	14	96797765	96797765	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:96797765A>T	uc001yfi.2	-	11	2043	c.1678T>A	c.(1678-1680)TTT>ATT	p.F560I		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	560										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		AAAGACTTAAAATCTTCTGTT	0.378													19	45					0	0	0.00074312	0	0
DEGS2	123099	broad.mit.edu	37	14	100613156	100613156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:100613156G>A	uc001ygx.2	-	3	1002	c.914C>T	c.(913-915)TCC>TTC	p.S305F		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	305					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				GGGCCCCAGGGAGTCCTCAAA	0.622													28	38					0	0	0.001512	0	0
C14orf73	91828	broad.mit.edu	37	14	103574820	103574820	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:103574820C>T	uc001ymk.2	+	10	2018	c.1942C>T	c.(1942-1944)CTG>TTG	p.L648L		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	648											0		Melanoma(154;0.155)	Epithelial(46;0.221)			CCAGCGGCACCTGGAGACTCT	0.592													36	65					0	0	0.0025221	0	0
KIF26A	26153	broad.mit.edu	37	14	104641757	104641757	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:104641757C>T	uc001yos.3	+	12	2632	c.2632C>T	c.(2632-2634)CCC>TCC	p.P878S		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	878					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GGGCCGGAAGCCCTCGCCACC	0.706													6	4					0	0	0.00198382	0	0
ADAM6	8755	broad.mit.edu	37	14	106780696	106780696	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:106780696C>T	uc010tyt.1	-	413		c.15166G>A								Parts of antibodies, mostly variable regions.												0						GCTGCCGGATCCAGCCCCACC	0.582													20	31					0	0	0.00152264	0	0
ADAM6	8755	broad.mit.edu	37	14	107013292	107013292	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr14:107013292C>T	uc010tyt.1	-	169		c.7765G>A								Parts of antibodies, mostly variable regions.												0						CCACACATATCCACTGTTTCT	0.488													22	28					0	0	0.00188189	0	0
Unknown	0	broad.mit.edu	37	15	20496691	20496691	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:20496691C>T	uc001ytf.1	+	6		c.744C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTGTGAACTCCATGGTTTGAA	0.423													6	83					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	15	20644851	20644851	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:20644851C>T	uc001ytg.2	-	21	3116	c.2407G>A	c.(2407-2409)GCG>ACG	p.A803T	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.A803T|uc010tyy.1_Missense_Mutation_p.A803T					RecName: Full=Putative HERC2-like protein 3;																		ATGTCCCTCGCCCTTTCGGTC	0.458													18	69					0	0	0.00047179	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413716	22413716	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:22413716C>T	uc001yuf.2	+	1	15	c.15C>T	c.(13-15)TTC>TTT	p.F5F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGGTGGACTTCCTCTCTGAGA	0.512													16	138					0	0	0.00121646	0	0
C15orf2	23742	broad.mit.edu	37	15	24921240	24921240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:24921240C>T	uc001ywo.2	+	1	700	c.226C>T	c.(226-228)CGG>TGG	p.R76W		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	76					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCTCTCCCTCGGGCTGCGGC	0.711													12	20					0	0	0.00185496	0	0
SNRPN	6638	broad.mit.edu	37	15	25220561	25220561	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:25220561C>T	uc001ywp.1	+	8	950	c.60C>T	c.(58-60)ATC>ATT	p.I20I	SNRPN_uc001ywq.1_Silent_p.I20I|SNRPN_uc001ywr.1_Silent_p.I20I|SNRPN_uc001yws.1_Silent_p.I20I|SNRPN_uc001ywt.1_Silent_p.I20I|SNRPN_uc001ywv.1_Silent_p.I23I|SNRPN_uc001yww.1_Silent_p.I20I|SNRPN_uc001ywx.1_Silent_p.I20I|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	20					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		TGAGATGTATCCTGCAAGATG	0.423									Prader-Willi_syndrome				33	60					0	0	0.00058488	0	0
GABRG3	2567	broad.mit.edu	37	15	27772760	27772760	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:27772760G>A	uc001zbg.1	+	8	1213	c.1047G>A	c.(1045-1047)ACG>ACA	p.T349T		NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	349	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CAACCACCACGAAGAAGACAA	0.493													5	10					0	0	0.000602214	0	0
RYR3	6263	broad.mit.edu	37	15	34147008	34147009	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:34147008_34147009GG>TT	uc001zhi.2	+	98	13972_13973	c.13902_13903GG>TT	c.(13900-13905)CTGGGC>CTTTGC	p.G4635C	RYR3_uc010bar.2_Missense_Mutation_p.G4630C	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4635	Helical; Name=M7; (Potential).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGTCAGTCCTGGGCCACTACAA	0.441													9	220					0	0	6.4e-05	0	0
SLC12A6	9990	broad.mit.edu	37	15	34536194	34536195	+	Nonsense_Mutation	DNP	GG	AA	AA	rs121908428		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:34536194_34536195GG>AA	uc001zhw.2	-	15	2186_2187	c.2022_2023CC>TT	c.(2020-2025)CCCCGA>CCTTGA	p.R675*	SLC12A6_uc001zhv.2_Nonsense_Mutation_p.R624*|SLC12A6_uc001zhx.2_Nonsense_Mutation_p.R660*|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Nonsense_Mutation_p.R616*|SLC12A6_uc001zib.2_Nonsense_Mutation_p.R666*|SLC12A6_uc001zic.2_Nonsense_Mutation_p.R675*|SLC12A6_uc010bau.2_Nonsense_Mutation_p.R675*|SLC12A6_uc001zid.2_Nonsense_Mutation_p.R616*|SLC12A6_uc001zht.2_RNA|SLC12A6_uc001zhu.2_Nonsense_Mutation_p.R487*	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	675	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	TAGCGGAATCGGGGTCTCCAGT	0.411													51	82					0	0	6.4e-05	0	0
C15orf55	256646	broad.mit.edu	37	15	34647860	34647860	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:34647860C>T	uc001zif.2	+	7	1722	c.1567C>T	c.(1567-1569)CTT>TTT	p.L523F	C15orf55_uc010ucc.1_Missense_Mutation_p.L551F|C15orf55_uc010ucd.1_Missense_Mutation_p.L541F	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	523						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CGCCGCTTGCCTTGGAAAGGT	0.587			T	BRD3|BRD4	lethal midline carcinoma								44	52					0	0	0.000781405	0	0
THBS1	7057	broad.mit.edu	37	15	39874510	39874510	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:39874510G>A	uc001zkh.2	+	3	363	c.184G>A	c.(184-186)GAG>AAG	p.E62K		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	62	TSP N-terminal.|Heparin-binding.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TTTCCGCATCGAGGATGCCAA	0.617													13	29					0	0	0.00185496	0	0
FSIP1	161835	broad.mit.edu	37	15	40068663	40068663	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:40068663G>A	uc001zki.2	-	2	281	c.63C>T	c.(61-63)CGC>CGT	p.R21R		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	21										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TGCTCCCAGGGCGTATTCTTG	0.353													39	63					0	0	0.00222228	0	0
DLL4	54567	broad.mit.edu	37	15	41224428	41224428	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:41224428C>T	uc001zng.1	+	5	1038	c.718C>T	c.(718-720)CTC>TTC	p.L240F		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	240	EGF-like 1.|Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		AGCAGAGTGCCTGTGAGTAGG	0.582													25	38					0	0	0.00278032	0	0
TYRO3	7301	broad.mit.edu	37	15	41870298	41870298	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:41870298G>A	uc001zof.1	+	19	2721	c.2497G>A	c.(2497-2499)GAT>AAT	p.D833N		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	833	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		TGGGGCTGGGGATGGCAGTGG	0.647													8	20					0	0	0.000274275	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42107932	42107932	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:42107932C>T	uc001zok.3	+	13	1732	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I	MAPKBP1_uc001zoj.3_Silent_p.I476I|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Silent_p.I476I|MAPKBP1_uc010udb.1_Silent_p.I315I|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	482	WD 7.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GCGTGGGCATCCGCTCGGTGT	0.587													12	16					0	0	0.00244969	0	0
TGM7	116179	broad.mit.edu	37	15	43568793	43568793	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:43568793C>T	uc001zrf.1	-	13	1998	c.1993G>A	c.(1993-1995)GGA>AGA	p.G665R		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	665					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	AGGGTGTGTCCGGCCACCAGA	0.592													34	56					0	0	0.00170553	0	0
CATSPER2	117155	broad.mit.edu	37	15	43924973	43924973	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:43924973G>A	uc001zsh.2	-	11	1553	c.1338C>T	c.(1336-1338)GTC>GTT	p.V446V	STRC_uc010udz.1_5'Flank|CATSPER2_uc010bdm.2_Intron|CATSPER2_uc001zsi.2_Silent_p.V444V|CATSPER2_uc001zsj.2_Silent_p.V444V	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	446	Cytoplasmic (Potential).|Ser-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		atgtggaggagacacaggagg	0.264													41	61					0	0	0.00111076	0	0
SLC28A2	9153	broad.mit.edu	37	15	45556877	45556877	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:45556877G>A	uc001zva.2	+	7	678	c.613G>A	c.(613-615)GGC>AGC	p.G205S		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	205	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		AGTGTTTTCGGGCCTAGGTCT	0.418													28	39					0	0	0.00128727	0	0
ATP8B4	79895	broad.mit.edu	37	15	50189491	50189491	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:50189491G>T	uc001zxu.2	-	23	2837	c.2695C>A	c.(2695-2697)CAG>AAG	p.Q899K	ATP8B4_uc010ber.2_Missense_Mutation_p.Q772K|ATP8B4_uc010ufd.1_Missense_Mutation_p.Q709K|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxv.1_Missense_Mutation_p.Q197K	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	899	Extracellular (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TTACCAACCTGGGCTGAGAAA	0.274													6	70					0.00116845	0.00521821	0.00116845	1	0
USP8	9101	broad.mit.edu	37	15	50791221	50791221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:50791221C>T	uc001zym.3	+	21	3793	c.3293C>T	c.(3292-3294)TCT>TTT	p.S1098F	USP8_uc001zyl.3_Missense_Mutation_p.S1098F|USP8_uc001zyn.3_Missense_Mutation_p.S1098F|USP8_uc010ufh.1_Missense_Mutation_p.S992F|USP8_uc001zyp.3_Missense_Mutation_p.S265F	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	1098					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		TCTGTGAAATCTTCAGCAGCT	0.378													35	40					0	0	0.00058488	0	0
MYO5C	55930	broad.mit.edu	37	15	52529717	52529717	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:52529717C>T	uc010bff.2	-	22	2967	c.2830G>A	c.(2830-2832)GAG>AAG	p.E944K	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	944	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CCCTTCTCCTCGTAATTTCGC	0.522													133	218					0	0	0.000781405	0	0
UNC13C	440279	broad.mit.edu	37	15	54306557	54306557	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:54306557C>T	uc002ack.2	+	1	1457	c.1457C>T	c.(1456-1458)TCA>TTA	p.S486L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	486					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGCTCAAAATCACACAGTGCT	0.378													13	18					0	0	0.00136819	0	0
UNC13C	440279	broad.mit.edu	37	15	54860061	54860061	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:54860061C>T	uc002ack.2	+	28	6022	c.6022C>T	c.(6022-6024)CAG>TAG	p.Q2008*		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2008	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CCCAGATCTTCAGTCTCTGAG	0.373													5	2					0	0	0.000602214	0	0
LIPC	3990	broad.mit.edu	37	15	58855876	58855876	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:58855876C>T	uc010bga.1	+	10	1950	c.1342C>T	c.(1342-1344)CTC>TTC	p.L448F	LIPC_uc010bfz.1_Missense_Mutation_p.L448F|LIPC_uc002afa.1_Missense_Mutation_p.L448F|LIPC_uc010bgb.1_Missense_Mutation_p.L346F|LIPC_uc010ugy.1_Missense_Mutation_p.L387F	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	448	PLAT.				cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		CCACTCAGGCCTCGTTCTGAA	0.453													6	14					0	0	0.00116845	0	0
TLN2	83660	broad.mit.edu	37	15	62993384	62993384	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:62993384G>A	uc002alb.3	+	14	1667	c.1667G>A	c.(1666-1668)GGA>GAA	p.G556E		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	556					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						ATCACGGCCGGAACGGCTTCA	0.433													22	30					0	0	0.00188189	0	0
SPG21	51324	broad.mit.edu	37	15	65262497	65262498	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:65262497_65262498CG>AT	uc002aod.2	-	6	608_609	c.515_516CG>AT	c.(514-516)CCG>CAT	p.P172H	SPG21_uc002aoe.2_Missense_Mutation_p.P172H|SPG21_uc010bhb.2_Missense_Mutation_p.P145H|SPG21_uc010bhc.2_Missense_Mutation_p.P18H	NM_001127889	NP_001121361	Q9NZD8	SPG21_HUMAN	spastic paraplegia 21 isoform a	172					cell death	cytosol|endosome membrane|trans-Golgi network transport vesicle	CD4 receptor binding				0						TAGGGTCCACCGGGCCAGATGA	0.396													9	324					0	0	6.4e-05	0	0
CILP	8483	broad.mit.edu	37	15	65499344	65499344	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:65499344C>T	uc002aon.2	-	4	381	c.200G>A	c.(199-201)GGG>GAG	p.G67E		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	67					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GTCGCCCTTCCCGCCTGGGTA	0.597													11	12					0	0	0.00136819	0	0
RPL4	6124	broad.mit.edu	37	15	66794245	66794245	+	Missense_Mutation	SNP	G	A	A	rs138828871	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:66794245G>A	uc002apv.2	-	5	483	c.427C>T	c.(427-429)CGT>TGT	p.R143C	RPL4_uc010bhr.2_Missense_Mutation_p.R49C|RPL4_uc002apw.2_Missense_Mutation_p.R49C|RPL4_uc002apx.2_Missense_Mutation_p.R49C|RPL4_uc010ujq.1_Missense_Mutation_p.R143C|SNORD18C_uc010bhs.1_5'Flank	NM_000968	NP_000959	P36578	RL4_HUMAN	ribosomal protein L4	143					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						TCCTCAATACGATGACCTAAC	0.338													30	32					0	0	0.00178596	0	0
LRRC49	54839	broad.mit.edu	37	15	71211510	71211510	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:71211510G>A	uc002asw.2	+	7	936	c.689G>A	c.(688-690)CGA>CAA	p.R230Q	LRRC49_uc002asu.2_Missense_Mutation_p.R220Q|LRRC49_uc002asx.2_Missense_Mutation_p.R186Q|LRRC49_uc010ukf.1_Missense_Mutation_p.R235Q|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Missense_Mutation_p.R202Q	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	230	LRR 6.					cytoplasm|microtubule				ovary(1)	1						CTTAACTTGCGACACAATCAA	0.333													37	59					0	0	0.0025221	0	0
THSD4	79875	broad.mit.edu	37	15	72020924	72020924	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:72020924G>A	uc002atb.1	+	8	1473	c.1394G>A	c.(1393-1395)GGG>GAG	p.G465E	THSD4_uc002atd.1_Missense_Mutation_p.G139E|THSD4_uc010ukg.1_Missense_Mutation_p.G105E|THSD4_uc002ate.2_Missense_Mutation_p.G105E	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	465						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						ATCATCAATGGGAACTGGGCA	0.502													48	64					0	0	0.000781405	0	0
MYO9A	4649	broad.mit.edu	37	15	72190481	72190481	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:72190481G>A	uc002atl.3	-	25	4836	c.4363C>T	c.(4363-4365)CTT>TTT	p.L1455F	MYO9A_uc010biq.2_Missense_Mutation_p.L1075F|MYO9A_uc002atn.1_Missense_Mutation_p.L1436F|MYO9A_uc002atk.2_Missense_Mutation_p.L179F|MYO9A_uc002atm.1_Missense_Mutation_p.L179F	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1455	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TCCAAAGTAAGAGCTTCCCCC	0.393													20	27					0	0	0.00152264	0	0
HEXA	3073	broad.mit.edu	37	15	72668076	72668076	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:72668076G>A	uc002aun.3	-	1	445	c.238C>T	c.(238-240)CGT>TGT	p.R80C	CELF6_uc002auk.3_RNA|HEXA_uc010ukn.1_Missense_Mutation_p.R80C|HEXA_uc002auo.3_5'UTR|HEXA_uc010bix.2_Missense_Mutation_p.R80C|HEXA_uc010biy.2_5'UTR|HEXA_uc010uko.1_5'UTR|HEXA_uc010biz.1_RNA|C15orf34_uc010ukp.1_5'Flank	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	80					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						AGGTAAGGACGGGGCCAAGAC	0.657													58	68					0	0	0.000781405	0	0
UBL7	84993	broad.mit.edu	37	15	74743820	74743820	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:74743820G>A	uc002axw.1	-	5	591	c.429C>T	c.(427-429)ATC>ATT	p.I143I	UBL7_uc002axx.1_Silent_p.I183I|UBL7_uc010bjr.1_Silent_p.I34I|UBL7_uc002axy.1_Silent_p.I143I|UBL7_uc002axz.1_Silent_p.I143I	NM_032907	NP_116296	Q96S82	UBL7_HUMAN	ubiquitin-like 7	143							protein binding			ovary(1)	1						TGGCCACAATGATCTGATCCA	0.493													35	60					0	0	0.00111076	0	0
LMAN1L	79748	broad.mit.edu	37	15	75108582	75108582	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:75108582C>T	uc002ayt.1	+	2	262	c.260C>T	c.(259-261)CCC>CTC	p.P87L	LMAN1L_uc010bkd.2_Missense_Mutation_p.P15L|LMAN1L_uc010ulo.1_Missense_Mutation_p.P15L|LMAN1L_uc010bke.1_Missense_Mutation_p.P87L	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	87	Lumenal (Potential).|L-type lectin-like.					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						GCCTCTGTCCCCTTCTCTGCC	0.662													4	8					0	0	0.00024832	0	0
KIAA1199	57214	broad.mit.edu	37	15	81199035	81199035	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:81199035G>A	uc002bfw.1	+	12	1703	c.1443G>A	c.(1441-1443)GAG>GAA	p.E481E	KIAA1199_uc010unn.1_Silent_p.E481E	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	481										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TCGGGGAGGAGATAGACGGCG	0.572													31	37					0	0	0.00128727	0	0
ALPK3	57538	broad.mit.edu	37	15	85383214	85383214	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:85383214C>T	uc002ble.2	+	5	1477	c.1310C>T	c.(1309-1311)CCC>CTC	p.P437L		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	437					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCGCCGGGCCCCTCGGTCCCT	0.667													14	7					0	0	0.00185496	0	0
ACAN	176	broad.mit.edu	37	15	89392722	89392722	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:89392722G>A	uc010upo.1	+	10	2160	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	ACAN_uc002bmx.2_Missense_Mutation_p.E596K|ACAN_uc010upp.1_Missense_Mutation_p.E596K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	596					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGAAGCACTGGAGTTCTGTGA	0.632													6	12					0	0	0.00198382	0	0
ACAN	176	broad.mit.edu	37	15	89401287	89401287	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:89401287G>A	uc010upo.1	+	12	5845	c.5471G>A	c.(5470-5472)GGT>GAT	p.G1824D	ACAN_uc010upp.1_Missense_Mutation_p.G1824D|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1824					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGTGGCAGCGGTGAATCTTCT	0.532													16	18					0	0	0.000566183	0	0
BLM	641	broad.mit.edu	37	15	91333954	91333955	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:91333954_91333955CC>AA	uc002bpr.2	+	15	2996_2997	c.2899_2900CC>AA	c.(2899-2901)CCT>AAT	p.P967N	BLM_uc010uqh.1_Missense_Mutation_p.P967N|BLM_uc010uqi.1_Missense_Mutation_p.P592N|BLM_uc010bnx.2_Missense_Mutation_p.P967N|BLM_uc002bps.1_Missense_Mutation_p.P529N	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	967	Helicase C-terminal.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TGCATCTCTCCCTAAATCTGTG	0.421			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				15	534					0	0	6.4e-05	0	0
FES	2242	broad.mit.edu	37	15	91435974	91435974	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:91435974C>T	uc002bpv.2	+	14	1841	c.1745C>T	c.(1744-1746)GCC>GTC	p.A582V	FES_uc010uqj.1_Missense_Mutation_p.A454V|FES_uc010uqk.1_Missense_Mutation_p.A564V|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.A454V|FES_uc002bpx.2_Missense_Mutation_p.A512V|FES_uc002bpy.2_Missense_Mutation_p.A524V	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	582	Protein kinase.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CGCCTGCGAGCCGACAACACC	0.577													99	166					0	0	0.000781405	0	0
MCTP2	55784	broad.mit.edu	37	15	94882563	94882563	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:94882563C>T	uc002btj.2	+	4	747	c.682C>T	c.(682-684)CTG>TTG	p.L228L	MCTP2_uc010urg.1_Silent_p.L228L|MCTP2_uc002bti.2_Silent_p.L228L|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Silent_p.L228L|MCTP2_uc002btg.3_Silent_p.L228L|MCTP2_uc002bth.3_Silent_p.L228L	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	228	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TGGGAAGACGCTGTACAAAAG	0.358													54	70					0	0	0.000781405	0	0
C15orf51	196968	broad.mit.edu	37	15	100331376	100331376	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:100331376G>A	uc010urx.1	-	5		c.2816C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						AATGGCAGAAGAAACTCAACA	0.483													10	11					0	0	0.000442599	0	0
LINS1	55180	broad.mit.edu	37	15	101114038	101114038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:101114038G>A	uc002bwe.2	-	6	1331	c.1040C>T	c.(1039-1041)TCG>TTG	p.S347L	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Missense_Mutation_p.S347L|LINS1_uc002bwg.2_Missense_Mutation_p.S347L|LINS1_uc002bwh.2_Missense_Mutation_p.S347L|LINS1_uc010usa.1_Missense_Mutation_p.S228L|LINS1_uc002bwi.2_Missense_Mutation_p.S347L	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	347											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			CAACAACCCCGAATTCACAGC	0.453													36	47					0	0	0.00195071	0	0
PCSK6	5046	broad.mit.edu	37	15	101970250	101970250	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr15:101970250C>T	uc002bwy.2	-	6	990	c.676G>A	c.(676-678)GAC>AAC	p.D226N	PCSK6_uc010bpd.2_Missense_Mutation_p.D96N|PCSK6_uc010bpe.2_Missense_Mutation_p.D226N|PCSK6_uc002bxa.2_Missense_Mutation_p.D226N|PCSK6_uc002bxb.2_Missense_Mutation_p.D226N|PCSK6_uc002bxc.1_Missense_Mutation_p.D226N|PCSK6_uc002bxd.1_Missense_Mutation_p.D226N|PCSK6_uc002bxe.2_Missense_Mutation_p.D226N|PCSK6_uc002bxg.1_Missense_Mutation_p.D226N	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	226	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCGTTCACGTCGTAGCTGGCG	0.478													12	24					0	0	0.00185496	0	0
C16orf91	283951	broad.mit.edu	37	16	1476323	1476323	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:1476323G>A	uc010uvd.1	-	3	300	c.300C>T	c.(298-300)AAC>AAT	p.N100N		NM_001010878	NP_001010878	Q4G0I0	CSMT1_HUMAN	hypothetical protein LOC283951	Error:Variant_position_missing_in_Q4G0I0_after_alignment						integral to membrane					0						CACCTTCCTGGTTGTTGTGGT	0.622													26	33					0	0	0.000878237	0	0
PTX4	390667	broad.mit.edu	37	16	1537629	1537629	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:1537629G>A	uc010uvf.1	-	2	469	c.469C>T	c.(469-471)CAC>TAC	p.H157Y		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	162						extracellular region	metal ion binding				0						CCCTGGCTGTGGACGAGGCCC	0.736													11	13					0	0	0.000673444	0	0
CCNF	899	broad.mit.edu	37	16	2493718	2493718	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:2493718C>T	uc002cqd.1	+	9	934	c.846C>T	c.(844-846)ATC>ATT	p.I282I	CCNF_uc002cqe.1_5'UTR	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	282					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding	p.I282M(1)		central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				CCAGTGAGATCGTCTGCCAGC	0.502													42	63					0	0	0.000680045	0	0
C16orf71	146562	broad.mit.edu	37	16	4797551	4797551	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:4797551G>C	uc002cxn.2	+	9	1950	c.1488G>C	c.(1486-1488)AGG>AGC	p.R496S		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	496										central_nervous_system(1)	1						CAAGAGGCAGGCCCAGAGCCC	0.632													6	5					0	0	0.00116845	0	0
ABAT	18	broad.mit.edu	37	16	8868910	8868910	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:8868910A>T	uc002czc.3	+	13	1284	c.1118A>T	c.(1117-1119)AAT>ATT	p.N373I	ABAT_uc002czd.3_Missense_Mutation_p.N373I|ABAT_uc010buh.2_Missense_Mutation_p.N315I|ABAT_uc010bui.2_Missense_Mutation_p.N373I	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	373					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	TTCAGGCCTAATGCTGTGAGT	0.552													32	31					0	0	0.00283554	0	0
CLEC16A	23274	broad.mit.edu	37	16	11219850	11219850	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:11219850C>T	uc002dao.2	+	22	2718	c.2488C>T	c.(2488-2490)CCA>TCA	p.P830S	CLEC16A_uc002dan.3_Missense_Mutation_p.P812S|CLEC16A_uc002dap.2_5'UTR	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	830										ovary(1)|central_nervous_system(1)	2						CCTGGACCTCCCAATCCAGCC	0.612													81	98					0	0	0.000781405	0	0
NOMO1	23420	broad.mit.edu	37	16	14970280	14970280	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:14970280C>T	uc002dcv.2	+	21	2487	c.2421C>T	c.(2419-2421)ATC>ATT	p.I807I		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	807	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						AAGGCCAGATCCACCCCGAGT	0.507													29	66					0	0	0.00058488	0	0
Unknown	0	broad.mit.edu	37	16	16468240	16468240	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:16468240G>A	uc002dey.2	+	5	1158	c.871G>A	c.(871-873)GGG>AGG	p.G291R						SubName: Full=cDNA FLJ42525 fis, clone BRACE3001391, highly similar to Polycystin;																		CATGCTGTATGGGGTGGACAG	0.667													14	50					0	0	0.00152264	0	0
C16orf62	57020	broad.mit.edu	37	16	19628025	19628025	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:19628025C>T	uc002dgn.1	+	14	1131	c.1119C>T	c.(1117-1119)GTC>GTT	p.V373V	C16orf62_uc002dgo.1_Intron|C16orf62_uc002dgp.1_Silent_p.V122V|C16orf62_uc002dgm.1_Silent_p.V373V	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	373						integral to membrane				ovary(1)	1						GGGATACGGTCCAGAACCAGC	0.507													15	39					0	0	0.000422831	0	0
GPRC5B	51704	broad.mit.edu	37	16	19884103	19884103	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:19884103A>T	uc002dgt.2	-	2	173	c.65T>A	c.(64-66)GTG>GAG	p.V22E	GPRC5B_uc010vav.1_Missense_Mutation_p.V48E	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	22										lung(1)|breast(1)|skin(1)	3						CGAGGTGATCACGAAGAGCAG	0.582													20	29					0	0	0.00121646	0	0
ACSM1	116285	broad.mit.edu	37	16	20702464	20702464	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:20702464G>A	uc002dhm.1	-	1	115	c.47C>T	c.(46-48)TCC>TTC	p.S16F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.S16F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	16					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GTTGTGGAAGGATTTGTGGAT	0.522													44	61					0	0	0.000781405	0	0
DNAH3	55567	broad.mit.edu	37	16	21048047	21048047	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:21048047T>C	uc010vbe.1	-	35	5074	c.5074A>G	c.(5074-5076)AAA>GAA	p.K1692E		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1692	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGATAATTTTCCCTATAAAC	0.383													40	60					0	0	0.000680045	0	0
ZP2	7783	broad.mit.edu	37	16	21214493	21214493	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:21214493G>A	uc002dii.2	-	10	1052	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	ZP2_uc010bwn.1_Missense_Mutation_p.S390F	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	351	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GATCACCATGGATACTGTCTC	0.403													16	27					0	0	0.00074312	0	0
GGA2	23062	broad.mit.edu	37	16	23489718	23489718	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:23489718G>A	uc002dlq.2	-	13	1339	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	421	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		GTGCTGAGAGGAGGTCCAGCA	0.587													16	36					0	0	0.000422831	0	0
GTF3C1	2975	broad.mit.edu	37	16	27519910	27519910	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:27519910A>T	uc002dov.1	-	8	1233	c.1193T>A	c.(1192-1194)CTA>CAA	p.L398Q	GTF3C1_uc002dou.2_Missense_Mutation_p.L398Q	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	398						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TCTTGCTTCTAGTTTTCCCAC	0.468													39	42					0	0	0.00128727	0	0
SH2B1	25970	broad.mit.edu	37	16	28877985	28877985	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:28877985C>T	uc002dri.2	+	4	1009	c.570C>T	c.(568-570)GGC>GGT	p.G190G	uc010vct.1_Intron|SH2B1_uc010vdc.1_Intron|SH2B1_uc002drj.2_Silent_p.G190G|SH2B1_uc002drk.2_Silent_p.G190G|SH2B1_uc002drl.2_Silent_p.G190G|SH2B1_uc010vdd.1_Intron|SH2B1_uc010vde.1_Silent_p.G190G|SH2B1_uc002drm.2_Silent_p.G190G	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	190	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|Interaction with RAC1 (By similarity).|Required for NGF signaling (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						CCTCGTCAGGCCCCCCAGTCT	0.652													29	33					0	0	0.00209593	0	0
ITGAL	3683	broad.mit.edu	37	16	30507449	30507449	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:30507449G>A	uc002dyi.3	+	14	1711	c.1535G>A	c.(1534-1536)GGG>GAG	p.G512E	ITGAL_uc002dyj.3_Missense_Mutation_p.G429E|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	512	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GAGCTGCAGGGGGACCCCGGC	0.577													40	69					0	0	0.00170553	0	0
ZNF646	9726	broad.mit.edu	37	16	31089890	31089890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:31089890C>T	uc002eap.2	+	2	2534	c.2245C>T	c.(2245-2247)CAG>TAG	p.Q749*		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	749					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GACCCATTTCCAGGGTGATAA	0.537													60	97					0	0	0.000781405	0	0
AHSP	51327	broad.mit.edu	37	16	31539891	31539891	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:31539891G>A	uc002ecj.2	+	3	273	c.188G>A	c.(187-189)CGA>CAA	p.R63Q		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	63					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CCCCAAGAGCGAGACAAGGCT	0.547													30	36					0	0	0.0024448	0	0
Unknown	0	broad.mit.edu	37	16	32190845	32190845	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:32190845G>A	uc010vfv.1	-	7		c.979C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		AGGTACCTCAGGAAACTCTCA	0.458													6	27					0	0	0.000157383	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404301	34404301	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:34404301C>T	uc002edv.1	-	1		c.462G>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						CCCTCGATTTCAATGTTGGGG	0.483													26	41					0	0	0.001512	0	0
MYLK3	91807	broad.mit.edu	37	16	46781899	46781899	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:46781899G>A	uc002eei.3	-	1	323	c.207C>T	c.(205-207)GCC>GCT	p.A69A	MYLK3_uc010vge.1_Intron	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	69					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GTGCCCGGGAGGCCTCCAGCC	0.672													15	23					0	0	0.00244969	0	0
ABCC11	85320	broad.mit.edu	37	16	48204118	48204118	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:48204118G>A	uc002eff.1	-	27	4139	c.3789C>T	c.(3787-3789)TTC>TTT	p.F1263F	ABCC11_uc002efg.1_Silent_p.F1263F|ABCC11_uc002efh.1_Intron|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1263	ABC transporter 2.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GCTTTTTGGGGAACTTTGAGA	0.522									Cerumen_Type				79	120					0	0	0.000781405	0	0
SNX20	124460	broad.mit.edu	37	16	50707821	50707821	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:50707821G>A	uc002egk.2	-	4	620	c.447C>T	c.(445-447)TTC>TTT	p.F149F	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	149	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						TCTCCTCAGCGAAGTTCCCAG	0.617													19	19					0	0	0.00188189	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53726061	53726062	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:53726061_53726062GG>AA	uc002ehp.2	-	4	509_510	c.445_446CC>TT	c.(445-447)CCA>TTA	p.P149L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P149L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P149L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P149L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P149L|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.P149L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	149					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATTATTGTATGGAGTTTGCCTG	0.396													202	350					0	0	6.4e-05	0	0
NLRC5	84166	broad.mit.edu	37	16	57054760	57054760	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:57054760G>A	uc002ekk.1	+	3	361	c.136G>A	c.(136-138)GAG>AAG	p.E46K	NLRC5_uc010ccq.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	46					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				TTCCAGGAACGAGACCTTGGA	0.532													12	18					0	0	0.000422831	0	0
NLRC5	84166	broad.mit.edu	37	16	57062269	57062269	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:57062269C>T	uc002ekk.1	+	8	2440	c.2215C>T	c.(2215-2217)CCT>TCT	p.P739S	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Intron|NLRC5_uc002ekl.2_Missense_Mutation_p.P544S|NLRC5_uc002ekm.2_Missense_Mutation_p.P544S|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	739					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GAAAGCTTTGCCTCTCTGTCC	0.562													24	36					0	0	0.000720815	0	0
NLRC5	84166	broad.mit.edu	37	16	57075940	57075940	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:57075940C>T	uc002ekk.1	+	19	3301	c.3076C>T	c.(3076-3078)CAG>TAG	p.Q1026*	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Nonsense_Mutation_p.Q775*|NLRC5_uc002ekl.2_Nonsense_Mutation_p.Q831*|NLRC5_uc002ekm.2_Nonsense_Mutation_p.Q831*|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Intron|NLRC5_uc002ekq.1_5'Flank	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1026	LRR 9.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CCGGCTGGCTCAGCTGCTCCC	0.637													15	31					0	0	0.00152264	0	0
NLRC5	84166	broad.mit.edu	37	16	57111870	57111870	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:57111870C>T	uc002ekk.1	+	43	5244	c.5019C>T	c.(5017-5019)GCC>GCT	p.A1673A	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Silent_p.A215A|NLRC5_uc002ekr.1_Silent_p.A560A	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1673	LRR 22.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GCTGCAATGCCCTGGGGGATC	0.672													16	20					0	0	0.00074312	0	0
CPNE2	221184	broad.mit.edu	37	16	57159865	57159865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:57159865G>A	uc002eks.1	+	11	1250	c.1021G>A	c.(1021-1023)GCC>ACC	p.A341T	CPNE2_uc010cct.1_Missense_Mutation_p.A367T|CPNE2_uc010ccu.1_Missense_Mutation_p.A341T|CPNE2_uc002ekt.1_Missense_Mutation_p.A99T	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	341	VWFA.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				ATATCTGTCGGCCATCTGGGC	0.507													19	27					0	0	0.00121646	0	0
CDH8	1006	broad.mit.edu	37	16	61747832	61747832	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:61747832C>T	uc002eog.1	-	10	1819	c.1567G>A	c.(1567-1569)GAT>AAT	p.D523N		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	523	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTGGGATCATCTTTGTCCATG	0.378													6	14					0	0	0.00116845	0	0
CDH16	1014	broad.mit.edu	37	16	66944275	66944275	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:66944275G>A	uc002eql.2	-	15	2128	c.2055C>T	c.(2053-2055)ATC>ATT	p.I685I	CDH16_uc010cdy.2_Silent_p.I663I|CDH16_uc002eqm.2_Silent_p.I588I	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	685	Extracellular (Potential).|Ectodomain G.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTCCACTCACGATCAAGCCAT	0.637													29	56					0	0	0.00283554	0	0
CDH16	1014	broad.mit.edu	37	16	66947150	66947151	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:66947150_66947151CC>TT	uc002eql.2	-	9	1010_1011	c.937_938GG>AA	c.(937-939)GGC>AAC	p.G313N	CDH16_uc010cdy.2_Missense_Mutation_p.G313N|CDH16_uc002eqm.2_Missense_Mutation_p.G216N	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	313	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		ATAGTCCTCGCCATGGGAATTC	0.624													29	44					0	0	6.4e-05	0	0
CDH16	1014	broad.mit.edu	37	16	66951570	66951570	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:66951570C>T	uc002eql.2	-	3	177	c.104G>A	c.(103-105)GGA>GAA	p.G35E	CDH16_uc010cdy.2_Missense_Mutation_p.G35E|CDH16_uc002eqm.2_Missense_Mutation_p.G35E	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	35	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		AGGGAAATTTCCACCATAGTT	0.582													11	13					0	0	0.00244969	0	0
LRRC36	55282	broad.mit.edu	37	16	67399213	67399213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:67399213G>A	uc002esv.2	+	7	728	c.709G>A	c.(709-711)GAA>AAA	p.E237K	LRRC36_uc002esw.2_Intron|LRRC36_uc010ceh.2_Missense_Mutation_p.E116K|LRRC36_uc002esx.2_Missense_Mutation_p.E116K|LRRC36_uc010vjk.1_Missense_Mutation_p.E116K|LRRC36_uc010vjl.1_Intron|LRRC36_uc002esy.2_Intron	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	237											0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		TTAGACACAGGAAGTAGCAAG	0.403													7	12					0	0	0.000442599	0	0
ESRP2	80004	broad.mit.edu	37	16	68267908	68267909	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:68267908_68267909CC>TT	uc010cfa.1	-	3	617_618	c.429_430GG>AA	c.(427-432)GAGGCC>GAAACC	p.A144T	ESRP2_uc002evp.1_5'Flank|ESRP2_uc002evq.1_Missense_Mutation_p.A144T	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	144					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						TTCCTGGAGGCCTCGGGGTGCA	0.624													8	10					0	0	6.4e-05	0	0
PDPR	55066	broad.mit.edu	37	16	70162962	70162962	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:70162962G>A	uc002eyf.1	+	6	1501	c.544G>A	c.(544-546)GAG>AAG	p.E182K	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Missense_Mutation_p.E82K|PDPR_uc002eyg.1_5'Flank	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	182					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		GCATGTTCCCGAGGATGCAGT	0.532													91	181					0	0	0.000781405	0	0
HYDIN	54768	broad.mit.edu	37	16	71015398	71015398	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:71015398C>T	uc002ezr.2	-	29	4531	c.4403G>A	c.(4402-4404)AGG>AAG	p.R1468K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1469										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGGAAACTCCTTTTAAAGAC	0.478													49	52					0	0	0.000781405	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674707	71674707	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:71674707G>A	uc002fau.2	+	3	1073	c.1010G>A	c.(1009-1011)AGA>AAA	p.R337K	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	340	MARVEL.|Extracellular (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				TGCAAAACAAGAGAGAGGCTC	0.582													28	31					0	0	0.00106085	0	0
HP	3240	broad.mit.edu	37	16	72094666	72094666	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:72094666G>A	uc002fbr.3	+	7	1142	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.E307E|HP_uc002fbt.3_Silent_p.E307E|HP_uc002fbu.1_Silent_p.E104E|HP_uc002fbv.3_Silent_p.E277E|HP_uc002fbw.3_Silent_p.E188E|HP_uc002fbx.3_Silent_p.E188E|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	366	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		ACCTGGAGGAGGACACCTGGT	0.517													26	53					0	0	0.00106085	0	0
ZFHX3	463	broad.mit.edu	37	16	72829797	72829797	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:72829797C>T	uc002fck.2	-	9	7457	c.6784G>A	c.(6784-6786)GAT>AAT	p.D2262N	ZFHX3_uc002fcl.2_Missense_Mutation_p.D1348N	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2262	Homeobox 2.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCATTGGCATCGAAGAAGTCC	0.488													67	90					0	0	0.000781405	0	0
LDHD	197257	broad.mit.edu	37	16	75148831	75148832	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:75148831_75148832TC>AT	uc002fdm.2	-	4	409_410	c.362_363GA>AT	c.(361-363)CGA>CAT	p.R121H	LDHD_uc002fdn.2_Missense_Mutation_p.R121H	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	121	FAD-binding PCMH-type.						D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						GCTCCAGGATTCGGTCCATATG	0.634													19	37					0	0	6.4e-05	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353807	77353807	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:77353807G>A	uc002ffc.3	-	16	2890	c.2471C>T	c.(2470-2472)TCT>TTT	p.S824F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S412F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S520F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	824	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GCGGTTGAAAGAGCGCTGGTA	0.557													16	5					0	0	0.000566183	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77359844	77359844	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:77359844G>A	uc002ffc.3	-	13	2370	c.1951C>T	c.(1951-1953)CGG>TGG	p.R651W	ADAMTS18_uc010chc.1_Missense_Mutation_p.R239W|ADAMTS18_uc002ffe.1_Missense_Mutation_p.R347W	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	651	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGTTGAGCCCGAAAATCCAAG	0.423													9	3					0	0	0.000274275	0	0
BCMO1	53630	broad.mit.edu	37	16	81323952	81323952	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:81323952G>A	uc002fgn.1	+	11	1633	c.1415_splice	c.e11-1	p.G472_splice	BCMO1_uc010vnp.1_Splice_Site_p.G403_splice	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase						retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						TTTCCCTAAAGGAGTAATCTT	0.438													28	13					0	0	0.0024448	0	0
TAF1C	9013	broad.mit.edu	37	16	84215594	84215594	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:84215594G>A	uc002fhn.2	-	8	1020	c.792C>T	c.(790-792)CTC>CTT	p.L264L	TAF1C_uc002fhm.2_Silent_p.L197L|TAF1C_uc010vnx.1_Silent_p.L264L|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_5'UTR|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_5'UTR|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Silent_p.L264L	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	264					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						CAGGTCCCTGGAGCTGGATGC	0.557													35	13					0	0	0.00170553	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474536	84474536	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:84474536C>T	uc002fhx.2	+	14	1372	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	ATP2C2_uc010chj.2_Missense_Mutation_p.S428F|ATP2C2_uc002fhy.2_Missense_Mutation_p.S445F|ATP2C2_uc002fhz.2_Missense_Mutation_p.S277F	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	428	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AAGGAATTTTCCAATGTCTCA	0.498													28	12					0	0	0.001512	0	0
BANP	54971	broad.mit.edu	37	16	88039697	88039697	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:88039697G>T	uc002fkr.2	+	6	678	c.454G>T	c.(454-456)GCT>TCT	p.A152S	BANP_uc002fkp.2_Missense_Mutation_p.A122S|BANP_uc002fkq.2_Missense_Mutation_p.A122S|BANP_uc010vow.1_Missense_Mutation_p.A160S|BANP_uc002fks.3_Missense_Mutation_p.A121S|BANP_uc002fko.1_Missense_Mutation_p.A58S|BANP_uc010vov.1_Missense_Mutation_p.A127S	NM_079837	NP_524576	Q8N9N5	BANP_HUMAN	BTG3 associated nuclear protein isoform b	153	Interaction with CUX1 and HDAC1 (By similarity).				cell cycle|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0				BRCA - Breast invasive adenocarcinoma(80;0.00551)		CCCGTTTAGCGCTGTGCCTGG	0.592													31	10					1.30293e-26	5.97469e-26	0.00058488	1	0
NXN	64359	broad.mit.edu	37	17	704349	704349	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:704349C>T	uc002fsa.2	-	8	1240	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q	NXN_uc010vqd.1_Missense_Mutation_p.R74Q|NXN_uc002frz.2_Missense_Mutation_p.R134Q|NXN_uc010vqe.1_Missense_Mutation_p.R275Q	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	383					cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		GGTGTAATCTCGCAGGGAGTC	0.587													14	28					0	0	0.000566183	0	0
PRPF8	10594	broad.mit.edu	37	17	1580001	1580001	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:1580001G>A	uc002fte.2	-	16	2300	c.2186C>T	c.(2185-2187)CCT>CTT	p.P729L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	729						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CGGCAGCCCAGGGACCTAAAA	0.378													62	66					0	0	0.000781405	0	0
SPNS3	201305	broad.mit.edu	37	17	4391183	4391183	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:4391183G>A	uc002fxt.2	+	12	1577	c.1533G>A	c.(1531-1533)GAG>GAA	p.E511E	SPNS3_uc002fxu.2_Silent_p.E384E|SPNS3_uc002fxv.2_Silent_p.E162E|uc002fxw.1_5'Flank	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	511					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTACAGAGGAGCCCTGAGGTC	0.627													13	21					0	0	0.00074312	0	0
PELP1	27043	broad.mit.edu	37	17	4586150	4586150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:4586150G>A	uc002fyi.3	-	4	744	c.518C>T	c.(517-519)TCC>TTC	p.S173F	PELP1_uc010vsf.1_Missense_Mutation_p.S26F	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	173					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						GTGGTTCATGGAGATGTCCCG	0.652													5	7					0	0	0.000602214	0	0
ZMYND15	84225	broad.mit.edu	37	17	4646597	4646597	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:4646597G>A	uc002fyt.2	+	6	1184	c.1145_splice	c.e6-1	p.E382_splice	ZMYND15_uc002fyv.2_Splice_Site_p.E382_splice|ZMYND15_uc002fyu.2_Splice_Site_p.E382_splice	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2								zinc ion binding				0						TCCTTCTCCAGAGGTGACCAG	0.448													57	75					0	0	0.000781405	0	0
USP6	9098	broad.mit.edu	37	17	5058756	5058756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:5058756C>T	uc002gau.1	+	31	4913	c.2683C>T	c.(2683-2685)CGC>TGC	p.R895C	USP6_uc002gav.1_Missense_Mutation_p.R895C|USP6_uc010ckz.1_Missense_Mutation_p.R578C	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	895					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TCAGGAGAATCGCCCCAGCCT	0.458			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								37	55					0	0	0.0025221	0	0
NEURL4	84461	broad.mit.edu	37	17	7229762	7229762	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:7229762G>A	uc002gga.1	-	5	1205	c.1198C>T	c.(1198-1200)CAG>TAG	p.Q400*	NEURL4_uc002ggb.1_Nonsense_Mutation_p.Q400*|NEURL4_uc002ggc.1_5'UTR	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	400	NHR 2.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GTACCTGACTGGAGGTTGGTC	0.597													40	42					0	0	0.00195071	0	0
FGF11	2256	broad.mit.edu	37	17	7345123	7345123	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:7345123C>T	uc002ggz.2	+	3	584	c.333C>T	c.(331-333)CTC>CTT	p.L111L	FGF11_uc010vtw.1_Missense_Mutation_p.P90S|FGF11_uc010cmh.1_RNA|FGF11_uc010cmi.2_5'UTR|FGF11_uc010vtx.1_Silent_p.L52L|FGF11_uc002gha.3_5'UTR	NM_004112	NP_004103	Q92914	FGF11_HUMAN	fibroblast growth factor 11	111					cell-cell signaling|nervous system development|signal transduction		growth factor activity				0		Prostate(122;0.157)				CTGTGGGCCTCCGTGTGGTCA	0.602													13	16					0	0	0.00074312	0	0
DNAH2	146754	broad.mit.edu	37	17	7679359	7679359	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:7679359G>A	uc002giu.1	+	30	4853	c.4839G>A	c.(4837-4839)GTG>GTA	p.V1613V		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1613	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TTGGCGATGTGGAACAGACCA	0.617													23	36					0	0	0.00127121	0	0
KDM6B	23135	broad.mit.edu	37	17	7752206	7752206	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:7752206C>T	uc002giw.1	+	11	2976	c.2600C>T	c.(2599-2601)TCG>TTG	p.S867L	KDM6B_uc002gix.2_Missense_Mutation_p.S169L	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	867	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TCTGCTTCCTCGTCATCTCAG	0.716													9	15					0	0	0.000274275	0	0
ALOX15B	247	broad.mit.edu	37	17	7950951	7950951	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:7950951C>T	uc002gju.2	+	12	1765	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	ALOX15B_uc002gjv.2_Missense_Mutation_p.S521F|ALOX15B_uc002gjw.2_Missense_Mutation_p.S476F|ALOX15B_uc010vun.1_Missense_Mutation_p.S538F|ALOX15B_uc010cnp.2_Missense_Mutation_p.S356F	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	550	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						TTCACCTGCTCCGCCAAGCAT	0.627													5	13					0	0	0.00116845	0	0
GAS7	8522	broad.mit.edu	37	17	9850238	9850239	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:9850238_9850239GG>AA	uc002gmg.1	-	6	748_749	c.587_588CC>TT	c.(586-588)ACC>ATT	p.T196I	GAS7_uc010vvc.1_Missense_Mutation_p.T10I|GAS7_uc002gmh.1_Missense_Mutation_p.T56I|GAS7_uc010vvd.1_Missense_Mutation_p.T148I|GAS7_uc002gmi.2_Missense_Mutation_p.T132I|GAS7_uc002gmj.1_Missense_Mutation_p.T136I|GAS7_uc010coh.1_Missense_Mutation_p.T136I	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	196	FCH.				cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						AGCTCCACTCGGTTGGTTTCAG	0.584			T	MLL	AML*								13	11					0	0	6.4e-05	0	0
MYH4	4622	broad.mit.edu	37	17	10356141	10356141	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:10356141C>T	uc002gmn.2	-	25	3331	c.3220G>A	c.(3220-3222)GAA>AAA	p.E1074K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1074	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGTCATTTTCTGTATCCATT	0.368													55	71					0	0	0.000781405	0	0
MYH2	4620	broad.mit.edu	37	17	10443353	10443353	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:10443353C>T	uc010coi.2	-	12	1167	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E347K|MYH2_uc010coj.2_Missense_Mutation_p.E347K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	347	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACCTTTTCTTCATTAGTAAAG	0.423													39	43					0	0	0.00128727	0	0
MYOCD	93649	broad.mit.edu	37	17	12655875	12655875	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:12655875C>T	uc002gnn.2	+	10	1569	c.1270C>T	c.(1270-1272)CCT>TCT	p.P424S	MYOCD_uc002gno.2_Missense_Mutation_p.P424S|MYOCD_uc002gnp.1_Missense_Mutation_p.P328S|MYOCD_uc002gnq.2_Missense_Mutation_p.P143S	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	424					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TGTCACTTTTCCTGTCACACC	0.572													39	42					0	0	0.0025221	0	0
SREBF1	6720	broad.mit.edu	37	17	17721087	17721087	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:17721087G>A	uc002gru.1	-	7	1521	c.1327C>T	c.(1327-1329)CTT>TTT	p.L443F	SREBF1_uc002grp.1_Silent_p.P12P|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_Missense_Mutation_p.L189F|SREBF1_uc002grs.1_Missense_Mutation_p.L419F|SREBF1_uc002grt.1_Missense_Mutation_p.L473F|SREBF1_uc010cpp.1_Missense_Mutation_p.L419F|SREBF1_uc010cpq.1_Missense_Mutation_p.L443F	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	443	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).|Interaction with LMNA (By similarity).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						CTGCTGCCAAGGGACAAGGGG	0.652													27	35					0	0	0.001512	0	0
LRRC48	83450	broad.mit.edu	37	17	17881042	17881042	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:17881042G>A	uc010vxd.1	+	4	509	c.130G>A	c.(130-132)GAT>AAT	p.D44N	LRRC48_uc002gsa.2_Missense_Mutation_p.D44N|LRRC48_uc010vxc.1_Missense_Mutation_p.D44N|LRRC48_uc002gsb.2_Missense_Mutation_p.D44N	NM_001130090	NP_001123562	Q9H069	LRC48_HUMAN	leucine rich repeat containing 48 isoform a	44	LRR 1.					cytoplasm				pancreas(1)	1	all_neural(463;0.228)					CCTCTTCAAGGATGTCCTGTC	0.627													13	19					0	0	0.00185496	0	0
TRIM16L	147166	broad.mit.edu	37	17	18638485	18638485	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:18638485C>T	uc002gug.1	+	10	1446	c.759C>T	c.(757-759)CTC>CTT	p.L253L	TRIM16L_uc010vyf.1_Silent_p.L307L|TRIM16L_uc002guh.1_Silent_p.L253L|TRIM16L_uc010cqg.1_Silent_p.L355L|TRIM16L_uc002gui.1_Silent_p.L253L|TRIM16L_uc010vyg.1_Silent_p.L253L|TRIM16L_uc010vyh.1_3'UTR	NM_001037330	NP_001032407	Q309B1	TR16L_HUMAN	tripartite motif-containing 16-like	253	B30.2/SPRY.					cytoplasm					0						CCTGGAGCCTCCAATGGAACG	0.572													54	74					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	17	20405937	20405937	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:20405937C>T	uc002gxb.2	-	5		c.1082G>A								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		TCTCCAGGCCCTGGAACACCC	0.587													7	15					0	0	0.000274275	0	0
FLJ40504	284085	broad.mit.edu	37	17	26604343	26604343	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:26604343G>A	uc002has.3	-	3	228	c.132C>T	c.(130-132)CTC>CTT	p.L44L		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		GGAGAGGGTGGAGCAAGTGGT	0.547													22	33					0	0	0.00047179	0	0
SGK494	124923	broad.mit.edu	37	17	26941126	26941126	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:26941126G>A	uc002hbr.1	-	1	86	c.54C>T	c.(52-54)ACC>ACT	p.T18T	SGK494_uc010waq.1_Silent_p.T18T|SGK494_uc010war.1_RNA|uc010crq.1_5'Flank|uc002hbs.1_Intron	NM_144610	NP_653211			uncharacterized serine/threonine-protein kinase												0						CAGCCACCCGGGTGTGTTCCC	0.607													39	34					0	0	0.000781405	0	0
SUPT6H	6830	broad.mit.edu	37	17	27014149	27014149	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:27014149C>T	uc002hby.2	+	22	2834	c.2744C>T	c.(2743-2745)TCC>TTC	p.S915F	SUPT6H_uc010crt.2_Missense_Mutation_p.S915F|SUPT6H_uc002hbz.1_5'Flank	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	915					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CAGGCCGTCTCCCTGGCCCGG	0.542													46	68					0	0	0.000781405	0	0
SEZ6	124925	broad.mit.edu	37	17	27308885	27308885	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:27308885G>A	uc002hdp.2	-	2	422	c.228C>T	c.(226-228)TTC>TTT	p.F76F	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Silent_p.F76F|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Silent_p.F76F	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	76	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CCTCTTGTAGGAATTCCTCAA	0.622													23	28					0	0	0.00229938	0	0
TAOK1	57551	broad.mit.edu	37	17	27809280	27809280	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:27809280C>T	uc002hdz.1	+	8	823	c.629C>T	c.(628-630)TCT>TTT	p.S210F	TAOK1_uc010wbe.1_Missense_Mutation_p.S210F|TAOK1_uc010wbf.1_Missense_Mutation_p.S210F|TAOK1_uc002heb.1_Missense_Mutation_p.S36F	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	210	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			GATGTGTGGTCTCTTGGAATA	0.313													48	81					0	0	0.000781405	0	0
NF1	4763	broad.mit.edu	37	17	29486027	29486027	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:29486027G>A	uc002hgg.2	+	3	538	c.205_splice	c.e3-1	p.R69_splice	NF1_uc002hge.1_Splice_Site_p.R69_splice|NF1_uc002hgf.1_Splice_Site_p.R69_splice|NF1_uc002hgh.2_Splice_Site_p.R69_splice|NF1_uc010csn.1_Splice_Site	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(5)|p.?(4)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TTTTCTGTTAGAGAATATTTG	0.313			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			16	41					0	0	0.000422831	0	0
NF1	4763	broad.mit.edu	37	17	29509615	29509615	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:29509615C>T	uc002hgg.2	+	8	1153	c.820C>T	c.(820-822)CTT>TTT	p.L274F	NF1_uc002hge.1_Missense_Mutation_p.L274F|NF1_uc002hgf.1_Missense_Mutation_p.L274F|NF1_uc002hgh.2_Missense_Mutation_p.L274F|NF1_uc010csn.1_Missense_Mutation_p.L134F	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	274					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.L274R(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AATCATTCTCCTTATCTTGTG	0.373			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			21	22					0	0	0.00152264	0	0
MYO1D	4642	broad.mit.edu	37	17	30821872	30821872	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:30821872T>A	uc002hho.1	-	22	2938	c.2926A>T	c.(2926-2928)AAG>TAG	p.K976*		NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	976						myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			ACGGTGCACTTCTTCCCGTGC	0.612													6	19					0	0	0.00198382	0	0
ACACA	31	broad.mit.edu	37	17	35603821	35603821	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:35603821G>A	uc002hnm.2	-	19	2461	c.2270C>T	c.(2269-2271)CCT>CTT	p.P757L	ACACA_uc002hnk.2_Missense_Mutation_p.P679L|ACACA_uc002hnl.2_Missense_Mutation_p.P699L|ACACA_uc002hnn.2_Missense_Mutation_p.P757L|ACACA_uc002hno.2_Missense_Mutation_p.P794L|ACACA_uc010cuz.2_Missense_Mutation_p.P757L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	757	Biotinyl-binding.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CCCAGCAGAAGGTGAGCGCAT	0.463													40	55					0	0	0.00128727	0	0
DDX52	11056	broad.mit.edu	37	17	36002295	36002295	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:36002295G>A	uc002hoi.1	-	2	168	c.130C>T	c.(130-132)CAG>TAG	p.Q44*	DDX52_uc002hoh.1_5'UTR|DDX52_uc002hoj.1_5'UTR	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	44						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				TCCAGTCCCTGAAGCACCTCC	0.393													14	35					0	0	0.00185496	0	0
GPR179	440435	broad.mit.edu	37	17	36485008	36485008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:36485008C>T	uc002hpz.2	-	11	4465	c.4444G>A	c.(4444-4446)GAG>AAG	p.E1482K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1482	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TCATCCAGCTCCCAGGGACAG	0.512													70	72					0	0	0.000781405	0	0
ERBB2	2064	broad.mit.edu	37	17	37883082	37883082	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:37883082C>T	uc002hso.2	+	25	3223	c.2985C>T	c.(2983-2985)GGC>GGT	p.G995G	ERBB2_uc002hsm.2_Silent_p.G965G|ERBB2_uc010cwa.2_Silent_p.G980G|ERBB2_uc002hsp.2_Silent_p.G798G|ERBB2_uc010cwb.2_Silent_p.G995G|ERBB2_uc010wek.1_Silent_p.G719G	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	995	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	AGGACTTGGGCCCAGCCAGTC	0.622		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			34	30					0	0	0.000692331	0	0
KRT31	3881	broad.mit.edu	37	17	39552765	39552765	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:39552765G>A	uc002hwn.2	-	3	548	c.495C>T	c.(493-495)ATC>ATT	p.I165I	KRT31_uc010cxn.2_Silent_p.I165I	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	165	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GCTCATCCAGGATCCTGCGCA	0.607													23	26					0	0	0.00047179	0	0
KRT37	8688	broad.mit.edu	37	17	39577646	39577646	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:39577646C>G	uc002hwp.1	-	6	1261	c.1214G>C	c.(1213-1215)CGG>CCG	p.R405P	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	405	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				CAGAAGGTTCCGGTATGTGGC	0.562													20	28					0	0	0.00229938	0	0
KRT9	3857	broad.mit.edu	37	17	39724455	39724455	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:39724455G>A	uc002hxe.3	-	6	1419	c.1353C>T	c.(1351-1353)ATC>ATT	p.I451I	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	451	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				GGTAGGTCTCGATTTCCTTCT	0.552													21	39					0	0	0.00047179	0	0
WNK4	65266	broad.mit.edu	37	17	40939866	40939866	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:40939866C>T	uc002ibj.2	+	8	1833	c.1812C>T	c.(1810-1812)CCC>CCT	p.P604P	WNK4_uc010wgx.1_Silent_p.P268P|WNK4_uc002ibk.1_Silent_p.P376P|WNK4_uc010wgy.1_Intron	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	604					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CCCTTCAGCCCCCTGGGGGGG	0.637													26	47					0	0	0.000720815	0	0
AOC3	8639	broad.mit.edu	37	17	41003627	41003628	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:41003627_41003628CC>TT	uc002ibv.2	+	1	427_428	c.267_268CC>TT	c.(265-270)GCCCGG>GCTTGG	p.R90W		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	90	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	CAGCCCAGGCCCGGCCCTCGGA	0.668													49	70					0	0	6.4e-05	0	0
NBR1	4077	broad.mit.edu	37	17	41343492	41343492	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:41343492C>T	uc010czd.2	+	10	1107	c.967C>T	c.(967-969)CTT>TTT	p.L323F	NBR1_uc010diz.2_Missense_Mutation_p.L323F|NBR1_uc010whu.1_Missense_Mutation_p.L323F|NBR1_uc010whv.1_Missense_Mutation_p.L323F|NBR1_uc010whw.1_Missense_Mutation_p.L302F|NBR1_uc010whx.1_Missense_Mutation_p.L132F	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	323					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		TAAAAAGCAGCTTAAACTCCA	0.438													10	12					0	0	0.000673444	0	0
MPP2	4355	broad.mit.edu	37	17	41975721	41975721	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:41975721C>T	uc010wip.1	-	3	251	c.194G>A	c.(193-195)GGA>GAA	p.G65E	MPP2_uc002ien.1_Missense_Mutation_p.G37E|MPP2_uc010wim.1_Missense_Mutation_p.G9E|MPP2_uc002ieo.1_Missense_Mutation_p.G20E|MPP2_uc010win.1_Intron|MPP2_uc010wio.1_Missense_Mutation_p.G9E|MPP2_uc010czm.1_Missense_Mutation_p.G9E	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	20	L27 1.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		GGGGAGGGATCCCAAGTTGTC	0.552													11	25					0	0	0.00136819	0	0
TMEM101	84336	broad.mit.edu	37	17	42089457	42089457	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:42089457G>A	uc002ieu.2	-	4	638	c.613C>T	c.(613-615)CAG>TAG	p.Q205*	TMEM101_uc010wis.1_Nonsense_Mutation_p.Q147*	NM_032376	NP_115752	Q96IK0	TM101_HUMAN	transmembrane protein 101	205					positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		Breast(137;0.0264)|Prostate(33;0.0861)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GCCAGGATCTGGGCAGCGAGG	0.567													22	30					0	0	0.00278032	0	0
SLC4A1	6521	broad.mit.edu	37	17	42333174	42333174	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:42333174T>C	uc002igf.3	-	14	1816	c.1667A>G	c.(1666-1668)AAC>AGC	p.N556S		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	556	Extracellular (Potential).|Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CATCAACACGTTGTAGTTATA	0.537													57	85					0	0	0.000781405	0	0
ADAM11	4185	broad.mit.edu	37	17	42837206	42837206	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:42837206G>A	uc002ihh.2	+	2	178	c.178G>A	c.(178-180)GGA>AGA	p.G60R	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	60					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GAGCTCCGGGGGAGAGGTCCG	0.697													16	11					0	0	0.000308642	0	0
C1QL1	10882	broad.mit.edu	37	17	43044829	43044829	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:43044829C>T	uc002ihv.2	-	1	816	c.588G>A	c.(586-588)AAG>AAA	p.K196K		NM_006688	NP_006679	O75973	C1QRF_HUMAN	complement component 1, q subcomponent-like 1	196	C1q.				locomotory behavior	collagen					0		Prostate(33;0.155)				CCTGGCCATTCTTGCAGAGGT	0.662													10	8					0	0	0.000673444	0	0
FMNL1	752	broad.mit.edu	37	17	43321209	43321209	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:43321209C>T	uc002iin.2	+	18	2465	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	FMNL1_uc002iiq.2_Silent_p.F333F|FMNL1_uc010dag.2_RNA	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	755	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						TGATGCGCTTCCTGCCCACAG	0.602													17	12					0	0	0.00121646	0	0
WNT9B	7484	broad.mit.edu	37	17	44952698	44952698	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:44952698G>A	uc002ikw.1	+	3	603	c.566G>A	c.(565-567)CGG>CAG	p.R189Q	WNT9B_uc002ikx.1_Missense_Mutation_p.R189Q	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	189					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CTGCGGGCACGGGCAGACGCC	0.617													8	13					0	0	0.000274275	0	0
ITGB3	3690	broad.mit.edu	37	17	45369600	45369600	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:45369600C>T	uc002ilj.2	+	10	1376	c.1356C>T	c.(1354-1356)ATC>ATT	p.I452I	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	452	Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	ACAGCCTGATCGTCCAGGTCA	0.547													25	35					0	0	0.00047179	0	0
SP6	80320	broad.mit.edu	37	17	45924965	45924965	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:45924965C>G	uc002img.1	-	2	1163	c.831G>C	c.(829-831)TGG>TGC	p.W277C	SP6_uc002imh.1_Missense_Mutation_p.W277C	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	277	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CGCCGCTGTGCCAGCGCAGGT	0.662													18	19					0	0	0.00074312	0	0
SNX11	29916	broad.mit.edu	37	17	46198670	46198670	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:46198670G>A	uc002inf.1	+	8	967	c.613G>A	c.(613-615)GAA>AAA	p.E205K	SNX11_uc010wlg.1_Missense_Mutation_p.E197K|SNX11_uc010wlh.1_Missense_Mutation_p.E197K|SNX11_uc010wli.1_Missense_Mutation_p.E144K|SNX11_uc010wlj.1_Missense_Mutation_p.E61K|SNX11_uc002ing.1_Missense_Mutation_p.E205K|SNX11_uc002inh.1_Missense_Mutation_p.E205K	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	205					cell communication|protein transport	membrane	phosphatidylinositol binding				0						GGACCATTTAGAAGTGTGGGC	0.507													56	83					0	0	0.000781405	0	0
HOXB13	10481	broad.mit.edu	37	17	46805734	46805734	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:46805734G>A	uc002ioa.2	-	1	378	c.222C>T	c.(220-222)TCC>TCT	p.S74S		NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	74					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGGGAGCTGGGGACGTCCCCT	0.662													24	62					0	0	0.000586117	0	0
ITGA3	3675	broad.mit.edu	37	17	48149481	48149481	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:48149481C>T	uc010dbl.2	+	7	1555	c.1091C>T	c.(1090-1092)CCC>CTC	p.P364L	ITGA3_uc010dbm.2_Missense_Mutation_p.P364L	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	364	FG-GAP 6.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity	p.P364R(1)		ovary(2)|pancreas(1)	3						CTTCATGGCCCCAGTGGCTCT	0.557													42	44					0	0	0.000781405	0	0
CACNA1G	8913	broad.mit.edu	37	17	48674195	48674195	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:48674195G>A	uc002irk.1	+	16	3541	c.3169G>A	c.(3169-3171)GGC>AGC	p.G1057S	CACNA1G_uc002iri.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irj.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irl.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irm.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irn.1_Missense_Mutation_p.G1034S|CACNA1G_uc002iro.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irp.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irq.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irr.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irs.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irt.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irv.1_Missense_Mutation_p.G1057S|CACNA1G_uc002irw.1_Missense_Mutation_p.G1034S|CACNA1G_uc002iru.1_Missense_Mutation_p.G1034S|CACNA1G_uc002irx.1_Missense_Mutation_p.G970S|CACNA1G_uc002iry.1_Missense_Mutation_p.G970S|CACNA1G_uc002irz.1_Missense_Mutation_p.G970S|CACNA1G_uc002isa.1_Missense_Mutation_p.G970S|CACNA1G_uc002isb.1_Missense_Mutation_p.G970S|CACNA1G_uc002isc.1_Missense_Mutation_p.G970S|CACNA1G_uc002isd.1_Missense_Mutation_p.G970S|CACNA1G_uc002ise.1_Missense_Mutation_p.G970S|CACNA1G_uc002isf.1_Missense_Mutation_p.G970S|CACNA1G_uc002isg.1_Missense_Mutation_p.G970S|CACNA1G_uc002ish.1_Missense_Mutation_p.G970S|CACNA1G_uc002isi.1_Missense_Mutation_p.G947S|CACNA1G_uc002isj.2_5'Flank	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1057	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CACCAGCACGGGCCTGGGCGA	0.721													11	5					0	0	0.00185496	0	0
MBTD1	54799	broad.mit.edu	37	17	49270275	49270275	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:49270275G>T	uc002itr.3	-	15	1902	c.1558C>A	c.(1558-1560)CGT>AGT	p.R520S	MBTD1_uc002itp.3_Missense_Mutation_p.R356S|MBTD1_uc002itq.3_3'UTR	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	520	MBT 4.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			CTCAAGAGACGATGAATAATT	0.423													6	112					0.00116845	0.00521821	0.00116845	1	0
AKAP1	8165	broad.mit.edu	37	17	55184399	55184399	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:55184399C>T	uc002iux.2	+	2	1805	c.1574C>T	c.(1573-1575)TCG>TTG	p.S525L	AKAP1_uc010wnl.1_Missense_Mutation_p.S525L|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Missense_Mutation_p.S525L	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	525					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					GAGACCAGCTCGAGCCCCAGG	0.572													95	69					0	0	0.000781405	0	0
HSF5	124535	broad.mit.edu	37	17	56565373	56565373	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:56565373C>T	uc002iwi.1	-	1	387	c.263G>A	c.(262-264)GGC>GAC	p.G88D		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	88	By similarity.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTTGCGGAAGCCGTAGAGGTT	0.527													30	24					0	0	0.00283554	0	0
TBX4	9496	broad.mit.edu	37	17	59557462	59557462	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:59557462C>T	uc002izi.2	+	7	848	c.803C>T	c.(802-804)CCC>CTC	p.P268L	TBX4_uc010ddo.2_Missense_Mutation_p.P268L|TBX4_uc010woy.1_Missense_Mutation_p.P268L	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	268					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						AAAGAATACCCCGTGATTTCC	0.597													68	47					0	0	0.000781405	0	0
BRIP1	83990	broad.mit.edu	37	17	59761105	59761105	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:59761105G>A	uc002izk.1	-	20	3443	c.3302C>T	c.(3301-3303)CCA>CTA	p.P1101L		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	1101					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TTCAATGTCTGGATCCAGGGC	0.358			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				50	104					0	0	0.000781405	0	0
ABCA6	23460	broad.mit.edu	37	17	67096943	67096943	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:67096943G>A	uc002jhw.1	-	22	3182	c.3007C>T	c.(3007-3009)CCT>TCT	p.P1003S		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1003					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CTTACAAGAGGAAATGGGCTT	0.318													27	12					0	0	0.001512	0	0
C17orf28	283987	broad.mit.edu	37	17	72954844	72954844	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:72954844G>A	uc002jmj.3	-	10	1313	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	C17orf28_uc010wrs.1_Silent_p.F187F	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	388	Helical; (Potential).					integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TCTTCAGCACGAAGAAGAGGA	0.612											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	22					0	0	0.000422831	0	0
RECQL5	9400	broad.mit.edu	37	17	73626700	73626700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:73626700C>T	uc010dgl.2	-	13	1873	c.1717G>A	c.(1717-1719)GAA>AAA	p.E573K	RECQL5_uc010dgk.2_Missense_Mutation_p.E546K|RECQL5_uc002jot.3_5'Flank|LOC643008_uc002jow.2_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	573					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			GGAACTCACTCATCAGCGGTA	0.622								Other_identified_genes_with_known_or_suspected_DNA_repair_function					14	45					0	0	0.000308642	0	0
ITGB4	3691	broad.mit.edu	37	17	73746842	73746842	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:73746842C>T	uc002jpg.2	+	29	3743	c.3556C>T	c.(3556-3558)CTG>TTG	p.L1186L	ITGB4_uc002jph.2_Silent_p.L1186L|ITGB4_uc002jpi.3_Silent_p.L1186L|ITGB4_uc002jpj.2_Silent_p.L1186L	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1186	Fibronectin type-III 1.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCTCACCAACCTGTACCCGTA	0.617													26	57					0	0	0.001512	0	0
FBF1	85302	broad.mit.edu	37	17	73906868	73906868	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:73906868T>C	uc002jqc.2	-	29	3612	c.3338A>G	c.(3337-3339)AAT>AGT	p.N1113S	FBF1_uc002jqa.1_Intron|FBF1_uc010wsp.1_Missense_Mutation_p.N1104S|MRPL38_uc002jpz.1_5'Flank|FBF1_uc002jqb.2_RNA|FBF1_uc010dgr.1_Missense_Mutation_p.N423S	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	1113											0						GAACTGTTCATTCTCCAAGAA	0.572													13	8					0	0	0.00244969	0	0
FBF1	85302	broad.mit.edu	37	17	73924191	73924191	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:73924191C>T	uc002jqc.2	-	7	595	c.321G>A	c.(319-321)GGG>GGA	p.G107G	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Silent_p.G97G|FBF1_uc002jqd.1_Silent_p.G107G	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	107											0						GCTCTCCTTTCCCAGGGTCCT	0.542													45	29					0	0	0.000781405	0	0
CBX2	84733	broad.mit.edu	37	17	77758386	77758386	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:77758386C>T	uc002jxc.2	+	5	1186	c.1144C>T	c.(1144-1146)CCG>TCG	p.P382S		NM_005189	NP_005180	Q14781	CBX2_HUMAN	chromobox homolog 2 isoform 1	382					cell differentiation|chromatin modification|development of primary sexual characteristics|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex	DNA binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CAAGGGTGTCCCGGCCACCAA	0.662													13	43					0	0	0.000422831	0	0
Unknown	0	broad.mit.edu	37	17	78272221	78272221	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:78272221G>T	uc002jyf.2	+	11	2256	c.2113G>T	c.(2113-2115)GCC>TCC	p.A705S	uc002jyg.1_Missense_Mutation_p.A436S	NM_020954	NP_066005			hypothetical protein LOC57714																		TATGGAGCTGGCCCCGCGGCA	0.612													25	28					4.26978e-12	1.94204e-11	0.00047179	1	0
ASPSCR1	79058	broad.mit.edu	37	17	79954353	79954353	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:79954353A>G	uc002kcx.2	+	7	661	c.564A>G	c.(562-564)TCA>TCG	p.S188S	ASPSCR1_uc002kcw.1_Silent_p.S188S|ASPSCR1_uc002kcy.2_Silent_p.S188S|ASPSCR1_uc002kcz.2_Intron|ASPSCR1_uc002kda.2_Silent_p.S111S|ASPSCR1_uc002kdb.1_Silent_p.S111S	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	188							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TGGGCTCGTCAGCGTCGGCTG	0.657			T	TFE3	alveolar soft part sarcoma								18	29					0	0	0.00074312	0	0
METRNL	284207	broad.mit.edu	37	17	81052232	81052232	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr17:81052232G>A	uc002kgh.2	+	4	973	c.848G>A	c.(847-849)GGC>GAC	p.G283D	METRNL_uc002kgi.2_Missense_Mutation_p.G201D	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	283						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GCGCGGCTCGGCTGTGCCCCA	0.672													24	22					0	0	0.00278032	0	0
CLUL1	27098	broad.mit.edu	37	18	624990	624990	+	Silent	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:624990T>A	uc002kkp.2	+	4	526	c.381T>A	c.(379-381)ATT>ATA	p.I127I	CLUL1_uc010wys.1_Silent_p.I179I|CLUL1_uc002kkq.2_Silent_p.I127I	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	127					cell death	extracellular region				ovary(2)	2						GCATGAGAATTTATACAACCT	0.438													15	31					0	0	0.000422831	0	0
LAMA1	284217	broad.mit.edu	37	18	7013954	7013954	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:7013954C>T	uc002knm.2	-	23	3317	c.3223G>A	c.(3223-3225)GAT>AAT	p.D1075N	LAMA1_uc010wzj.1_Missense_Mutation_p.D551N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1075	Laminin EGF-like 12.			D -> V (in Ref. 3; CAA41418).	axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAACACTGATCGCAGGCCCGG	0.592													6	6					0	0	0.00116845	0	0
LAMA1	284217	broad.mit.edu	37	18	7024406	7024406	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:7024406G>T	uc002knm.2	-	18	2556	c.2462C>A	c.(2461-2463)CCG>CAG	p.P821Q	LAMA1_uc010wzj.1_Missense_Mutation_p.P297Q	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	821	Laminin EGF-like 7.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAGTAGCCCGGGGCACACCA	0.418													21	27					3.08376e-08	1.39232e-07	0.00047179	1	0
ANKRD12	23253	broad.mit.edu	37	18	9257234	9257234	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:9257234C>T	uc002knv.2	+	9	4226	c.3969C>T	c.(3967-3969)TTC>TTT	p.F1323F	ANKRD12_uc002knw.2_Silent_p.F1300F|ANKRD12_uc002knx.2_Silent_p.F1300F|ANKRD12_uc010dkx.1_Silent_p.F1030F	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1323						nucleus				ovary(2)|central_nervous_system(1)	3						CCAAACAATTCCAAACAATAT	0.398													30	57					0	0	0.00058488	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478362	14478363	+	RNA	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:14478362_14478363GG>AA	uc010xai.1	-	3		c.1201_1202CC>TT				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TGGATTCCAGGGATGAATGATT	0.47													6	22					0	0	6.4e-05	0	0
MIB1	57534	broad.mit.edu	37	18	19399522	19399522	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:19399522C>T	uc002ktq.2	+	12	1744	c.1744C>T	c.(1744-1746)CTT>TTT	p.L582F	MIB1_uc002ktp.2_Missense_Mutation_p.L221F	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	582	ANK 5.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			CCTAGCAGTTCTTTTGGAAGC	0.383													36	86					0	0	0.00111076	0	0
PSMA8	143471	broad.mit.edu	37	18	23731865	23731865	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:23731865G>A	uc002kvq.2	+	3	405	c.291G>A	c.(289-291)GTG>GTA	p.V97V	PSMA8_uc002kvo.2_Silent_p.V53V|PSMA8_uc002kvp.2_Silent_p.V91V|PSMA8_uc002kvr.2_Silent_p.V65V	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	97					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			GAGCCCGTGTGGAGTGCCAGA	0.368													16	22					0	0	0.000308642	0	0
DSC2	1824	broad.mit.edu	37	18	28671089	28671089	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:28671089T>C	uc002kwl.3	-	4	830	c.376A>G	c.(376-378)AAA>GAA	p.K126E	DSC2_uc002kwk.3_Missense_Mutation_p.K126E	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	126					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ACTTTTTCTTTAGTATGTCTT	0.363													10	14					0	0	0.00136819	0	0
DSG4	147409	broad.mit.edu	37	18	28968435	28968435	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:28968435G>A	uc002kwq.2	+	4	457	c.322G>A	c.(322-324)GAA>AAA	p.E108K	DSG4_uc002kwr.2_Missense_Mutation_p.E108K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	108	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCGCACTGGGGAAATTAACAT	0.398													4	10					0	0	0.00024832	0	0
KLHL14	57565	broad.mit.edu	37	18	30257204	30257204	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:30257204G>A	uc002kxm.1	-	8	2066	c.1678C>T	c.(1678-1680)CGA>TGA	p.R560*	KLHL14_uc010dmd.1_Nonsense_Mutation_p.R109*	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	560	Kelch 5.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GGGCCACTTCGACCCTCCAAA	0.478													20	22					0	0	0.000958276	0	0
C18orf34	374864	broad.mit.edu	37	18	30926193	30926194	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:30926193_30926194GG>AA	uc002kxn.2	-	8	781_782	c.639_640CC>TT	c.(637-642)CTCCCA>CTTTCA	p.P214S	C18orf34_uc010xbr.1_Missense_Mutation_p.P214S|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.P214S|C18orf34_uc002kxp.2_Missense_Mutation_p.P214S	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	214										ovary(1)	1						ACAGCCAATGGGAGTTCTTGAA	0.347													22	41					0	0	6.4e-05	0	0
ASXL3	80816	broad.mit.edu	37	18	31318854	31318854	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:31318854G>A	uc010dmg.1	+	11	1541	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	ASXL3_uc002kxq.2_Missense_Mutation_p.E203K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	496					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGCACCTCCTGAAGATAACTT	0.388													14	20					0	0	0.000422831	0	0
DTNA	1837	broad.mit.edu	37	18	32374194	32374194	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:32374194C>T	uc010dmn.1	+	3	343	c.342C>T	c.(340-342)TTC>TTT	p.F114F	DTNA_uc002kxu.2_Silent_p.F114F|DTNA_uc010xbx.1_Silent_p.F114F|DTNA_uc002kxv.3_Silent_p.F114F|DTNA_uc002kxw.2_Silent_p.F114F|DTNA_uc002kxx.2_Silent_p.F114F|DTNA_uc010dmj.2_Silent_p.F114F|DTNA_uc002kxz.2_Silent_p.F114F|DTNA_uc002kxy.2_Silent_p.F114F|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Silent_p.F114F|DTNA_uc002kyb.3_Silent_p.F114F|DTNA_uc010dmm.2_Silent_p.F114F	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	114	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TCCTTAACTTCCTGCTTGCAG	0.468													26	43					0	0	0.000586117	0	0
CELF4	56853	broad.mit.edu	37	18	34850794	34850794	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:34850794G>A	uc002lae.2	-	8	1432	c.1036C>T	c.(1036-1038)CCA>TCA	p.P346S	CELF4_uc010dnd.1_Missense_Mutation_p.P344S|CELF4_uc002lag.2_Missense_Mutation_p.P336S|CELF4_uc002laf.2_Missense_Mutation_p.P341S|CELF4_uc002lai.2_Missense_Mutation_p.P331S|CELF4_uc002lah.1_Missense_Mutation_p.P71S	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	346					embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						TTGGCCTGTGGGGGGAGGCCG	0.612													13	37					0	0	0.00244969	0	0
SETBP1	26040	broad.mit.edu	37	18	42530559	42530559	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:42530559G>A	uc010dni.2	+	4	1550	c.1254G>A	c.(1252-1254)AGG>AGA	p.R418R		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	418						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		ACCATAAGAGGAAAAAAAGAC	0.453									Schinzel-Giedion_syndrome				26	41					0	0	0.00106085	0	0
SETBP1	26040	broad.mit.edu	37	18	42531999	42531999	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:42531999C>T	uc010dni.2	+	4	2990	c.2694C>T	c.(2692-2694)TCC>TCT	p.S898S		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	898						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		ATTTCTGCTCCCTGGACAACC	0.552									Schinzel-Giedion_syndrome				18	12					0	0	0.000566183	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555148	44555149	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:44555148_44555149CC>TT	uc010xdb.1	-	1	1301_1302	c.1065_1066GG>AA	c.(1063-1068)GTGGAA>GTAAAA	p.E356K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	356	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GGGACCCCTTCCACGTCGCCGA	0.649													23	318					0	0	6.4e-05	0	0
LIPG	9388	broad.mit.edu	37	18	47107876	47107876	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:47107876C>T	uc002ldv.2	+	6	1137	c.885C>T	c.(883-885)TTC>TTT	p.F295F	LIPG_uc002ldu.1_Silent_p.F295F|LIPG_uc010xdh.1_Silent_p.F221F	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	295					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						GTTTTGCCTTCCAGTGCACTG	0.498													55	77					0	0	0.000781405	0	0
RAB27B	5874	broad.mit.edu	37	18	52556538	52556538	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:52556538G>A	uc002lfr.2	+	6	662	c.551G>A	c.(550-552)CGA>CAA	p.R184Q		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	184					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		ATCATGAAGCGAATGGAACAG	0.418													7	12					0	0	0.000157383	0	0
CCDC68	80323	broad.mit.edu	37	18	52608269	52608269	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:52608269C>T	uc002lfs.2	-	4	335	c.163G>A	c.(163-165)GAA>AAA	p.E55K	CCDC68_uc002lft.2_Missense_Mutation_p.E55K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	55										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TGTCTTATTTCATCTTTAAAC	0.323													14	29					0	0	0.00244969	0	0
PHLPP1	23239	broad.mit.edu	37	18	60612419	60612419	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:60612419T>G	uc002lis.2	+	13	1881	c.1703T>G	c.(1702-1704)ATG>AGG	p.M568R		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	1080	LRR 18.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						ACAACGATCATGAATTGCAGG	0.433													22	26					0	0	0.00229938	0	0
SERPINB3	6317	broad.mit.edu	37	18	61322957	61322957	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:61322957G>A	uc002lji.2	-	8	1251	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Silent_p.F317F	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	369					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGAAGAATAGGAAAGGGTGAT	0.438													5	8					0	0	0.00116845	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390499	61390499	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:61390499G>A	uc002ljk.3	+	9	1107	c.1045G>A	c.(1045-1047)GCC>ACC	p.A349T	SERPINB11_uc010xes.1_Missense_Mutation_p.A174T|SERPINB11_uc010dqd.2_Intron|SERPINB11_uc002ljj.3_Missense_Mutation_p.A235T|SERPINB11_uc010dqe.2_Missense_Mutation_p.A148T|SERPINB11_uc010dqf.2_Missense_Mutation_p.A147T	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	349	RCL (By similarity).				regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				GGCAGCAGCAGCCACTGGGGA	0.493													11	19					0	0	0.000978159	0	0
NETO1	81832	broad.mit.edu	37	18	70451049	70451049	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:70451049C>T	uc002lkw.2	-	7	1016	c.732G>A	c.(730-732)GAG>GAA	p.E244E	NETO1_uc002lkx.1_Silent_p.E243E|NETO1_uc002lky.1_Silent_p.E244E	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	244	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CTTTCAAATCCTCCACGGAAC	0.448													38	31					0	0	0.00148497	0	0
SALL3	27164	broad.mit.edu	37	18	76754350	76754350	+	Missense_Mutation	SNP	G	A	A	rs2974290		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr18:76754350G>A	uc002lmt.2	+	2	2359	c.2359G>A	c.(2359-2361)GAC>AAC	p.D787N	SALL3_uc010dra.2_Missense_Mutation_p.D394N	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	787				D -> N (in Ref. 2; CAB65124).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GGCCTACGACGACAAGAACGC	0.647													7	9					0	0	0.000157383	0	0
DAZAP1	26528	broad.mit.edu	37	19	1434888	1434888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:1434888G>A	uc002lsn.2	+	12	1390	c.1201G>A	c.(1201-1203)GGG>AGG	p.G401R	DAZAP1_uc002lsm.2_3'UTR|DAZAP1_uc002lso.2_Missense_Mutation_p.G400R|DAZAP1_uc002lsl.1_Missense_Mutation_p.G400R	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	401					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAACGTGCAAGGGTTCCACCC	0.562													5	4					0	0	0.000602214	0	0
SPPL2B	56928	broad.mit.edu	37	19	2345312	2345312	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:2345312C>T	uc002lvs.2	+	14	1418	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	SPPL2B_uc002lvr.2_Silent_p.F446F	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2	446	Helical; (Potential).					Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGTATACTTCGTGGCCTGCA	0.592													9	20					0	0	0.000673444	0	0
ZNF554	115196	broad.mit.edu	37	19	2827625	2827625	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:2827625C>T	uc002lwm.2	+	3	335	c.137C>T	c.(136-138)ACC>ATC	p.T46I	ZNF554_uc002lwl.2_5'UTR	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	46	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAATTAGTAACCTTTGAGGAC	0.537													27	44					0	0	0.000878237	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600434	3600434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:3600434G>A	uc002lyg.1	-	2	413	c.199C>T	c.(199-201)CTC>TTC	p.L67F	TBXA2R_uc002lye.1_Missense_Mutation_p.L67F	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	67	Helical; Name=2; (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	AGGCCGCAGAGGAAGGTGAGG	0.706													15	12					0	0	0.000308642	0	0
DAPK3	1613	broad.mit.edu	37	19	3961032	3961032	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:3961032G>A	uc002lzc.1	-	6	850	c.757C>T	c.(757-759)CGC>TGC	p.R253C	DAPK3_uc002lzb.1_5'UTR|DAPK3_uc002lzd.1_Missense_Mutation_p.R253C	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	253	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCAGCCGGCGAATGAAGTCC	0.622													21	35					0	0	0.000720815	0	0
LRG1	116844	broad.mit.edu	37	19	4538831	4538831	+	Silent	SNP	G	A	A	rs138125261	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:4538831G>A	uc002mau.2	-	2	176	c.165C>T	c.(163-165)TCC>TCT	p.S55S	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	55						extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGGTTGACAGGAGATGGAGC	0.632													38	46					0	0	0.00148497	0	0
MIR7-3	407045	broad.mit.edu	37	19	4770789	4770789	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:4770789G>A	hsa-mir-7-3|MI0000265	+			c.108G>A			C19orf30_uc002mbd.2_Intron|C19orf30_uc002mbe.2_Intron|C19orf30_uc010xii.1_Intron|uc010xij.1_RNA																	0						GACTCCCTTCGACCTTCGCCT	0.577													27	36					0	0	0.000720815	0	0
PTPRS	5802	broad.mit.edu	37	19	5212122	5212122	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:5212122G>A	uc002mbv.2	-	32	5143	c.4909C>T	c.(4909-4911)CAG>TAG	p.Q1637*	PTPRS_uc002mbu.1_Nonsense_Mutation_p.Q1206*|PTPRS_uc010xin.1_Nonsense_Mutation_p.Q1179*|PTPRS_uc002mbw.2_Nonsense_Mutation_p.Q1599*|PTPRS_uc002mbx.2_Nonsense_Mutation_p.Q1194*|PTPRS_uc002mby.2_Nonsense_Mutation_p.Q1190*	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1637	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		AAGCTGTACTGGTCCTCCGTC	0.602													30	30					0	0	0.00111076	0	0
PTPRS	5802	broad.mit.edu	37	19	5245958	5245958	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:5245958T>C	uc002mbv.2	-	10	1051	c.817A>G	c.(817-819)ATG>GTG	p.M273V	PTPRS_uc002mbu.1_Missense_Mutation_p.M260V|PTPRS_uc010xin.1_Missense_Mutation_p.M260V|PTPRS_uc002mbw.2_Missense_Mutation_p.M260V|PTPRS_uc002mbx.2_Missense_Mutation_p.M264V|PTPRS_uc002mby.2_Missense_Mutation_p.M260V	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	273	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		ACGTATGGCATGGGCGAGCCC	0.647													5	7					0	0	0.00116845	0	0
SAFB2	9667	broad.mit.edu	37	19	5591793	5591793	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:5591793G>A	uc002mcd.2	-	17	2572	c.2360C>T	c.(2359-2361)TCG>TTG	p.S787L		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	787	Arg-rich.|Interacts with SAFB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CATTGGCCTCGAACCCTCCCG	0.567													7	10					0	0	0.000157383	0	0
ACSBG2	81616	broad.mit.edu	37	19	6156556	6156556	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:6156556C>T	uc002mef.1	+	5	728	c.501C>T	c.(499-501)ATC>ATT	p.I167I	ACSBG2_uc002mee.1_Intron|ACSBG2_uc002meg.1_Silent_p.I167I|ACSBG2_uc002meh.1_Silent_p.I167I|ACSBG2_uc002mei.1_Silent_p.I117I|ACSBG2_uc010xiz.1_Silent_p.I167I	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	167					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TACAGAAAATCCTTTCGGTAA	0.463													60	79					0	0	0.000781405	0	0
SLC25A23	79085	broad.mit.edu	37	19	6454455	6454455	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:6454455A>C	uc002mex.1	-	6	816	c.674T>G	c.(673-675)ATC>AGC	p.I225S	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Missense_Mutation_p.I42S	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	225	Solcar 1.|Mitochondrial matrix (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						CCCCCCAAGGATGTTCAGCCG	0.597													27	54					0	0	0.001512	0	0
GPR108	56927	broad.mit.edu	37	19	6733031	6733031	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:6733031G>A	uc002mfp.2	-	10	946	c.900C>T	c.(898-900)GCC>GCT	p.A300A	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_Intron|GPR108_uc002mfo.3_Silent_p.A58A|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	300	Helical; Name=2; (Potential).					integral to membrane					0						TCTTGGTGAAGGCCAAGGCCG	0.637													3	7					0	0	6.4e-05	0	0
VAV1	7409	broad.mit.edu	37	19	6820766	6820766	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:6820766C>T	uc002mfu.1	+	2	355	c.258C>T	c.(256-258)TTC>TTT	p.F86F	VAV1_uc010xjh.1_Silent_p.F86F|VAV1_uc010dva.1_Silent_p.F86F|VAV1_uc002mfv.1_Silent_p.F31F	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	86	Leu-rich.|CH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						GTGAGAAGTTCGGCCTCAAGC	0.522													51	76					0	0	0.000781405	0	0
EMR1	2015	broad.mit.edu	37	19	6897529	6897529	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:6897529G>A	uc002mfw.2	+	5	523	c.485G>A	c.(484-486)GGA>GAA	p.G162E	EMR1_uc010dvc.2_Missense_Mutation_p.G162E|EMR1_uc010dvb.2_Missense_Mutation_p.G110E|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	162	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TGTCAAGTTGGATTCATCTCT	0.438													24	28					0	0	0.000586117	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7527156	7527156	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:7527156C>T	uc002mgi.2	+	11	2260	c.2007C>T	c.(2005-2007)TTC>TTT	p.F669F	ARHGEF18_uc010xjm.1_Silent_p.F511F|ARHGEF18_uc002mgh.2_Silent_p.F511F|ARHGEF18_uc002mgj.1_Silent_p.F312F	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	669					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				GAGGCCTATTCCGTGGAGGGG	0.607													17	25					0	0	0.00152264	0	0
FBN3	84467	broad.mit.edu	37	19	8175829	8175829	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:8175829C>T	uc002mjf.2	-	33	4254	c.4233G>A	c.(4231-4233)GGG>GGA	p.G1411G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1411	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CACAGAGGTTCCCTTGCGCAC	0.632													30	26					0	0	0.001512	0	0
MARCH2	51257	broad.mit.edu	37	19	8503361	8503361	+	Silent	SNP	C	A	A	rs143906987	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:8503361C>A	uc002mjv.2	+	6	1113	c.672C>A	c.(670-672)CCC>CCA	p.P224P	MARCH2_uc002mjw.2_Silent_p.P224P|MARCH2_uc002mjx.2_Silent_p.P154P	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	224					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CGGACAGCCCCGAGGGCCCCC	0.612													21	29					1.22574e-08	5.54235e-08	0.00229938	1	0
MUC16	94025	broad.mit.edu	37	19	9067149	9067149	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9067149G>A	uc002mkp.2	-	3	20501	c.20297C>T	c.(20296-20298)TCG>TTG	p.S6766L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6768	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCGCCATCGAGTGTGTTCC	0.483													48	51					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													28	25					0	0	0.00106085	0	0
MUC16	94025	broad.mit.edu	37	19	9084604	9084604	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9084604G>T	uc002mkp.2	-	1	7415	c.7211C>A	c.(7210-7212)TCC>TAC	p.S2404Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2404	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGAGATGGGGAGGAACTTGC	0.458													13	13					1.61879e-10	7.34655e-10	0.00136819	1	0
MUC16	94025	broad.mit.edu	37	19	9088960	9088960	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9088960T>C	uc002mkp.2	-	1	3059	c.2855A>G	c.(2854-2856)AAT>AGT	p.N952S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	952	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGTCTCTATTGGTCTGTGA	0.478													35	57					0	0	0.000953801	0	0
OR7G2	390882	broad.mit.edu	37	19	9213580	9213580	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9213580G>A	uc010xkk.1	-	1	403	c.403C>T	c.(403-405)CTC>TTC	p.L135F		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGCAAGGAGACAATTTTCC	0.507													26	28					0	0	0.000720815	0	0
OR7G1	125962	broad.mit.edu	37	19	9225760	9225760	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9225760C>T	uc002mks.1	-	1	680	c.680G>A	c.(679-681)AGA>AAA	p.R227K		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TGATGGCATTCTCAGAACAGA	0.393													24	49					0	0	0.00229938	0	0
OR7D2	162998	broad.mit.edu	37	19	9296799	9296799	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9296799C>T	uc002mkz.1	+	1	530	c.342C>T	c.(340-342)CTC>CTT	p.L114L		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	114	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						ACACGCTACTCCTGACCGTGA	0.507													52	81					0	0	0.000781405	0	0
OR7E24	26648	broad.mit.edu	37	19	9361851	9361851	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9361851C>T	uc002mlb.1	+	1	132	c.132C>T	c.(130-132)GTC>GTT	p.V44V		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCAGCCGGTCCTCGCTGGGC	0.577													8	14					0	0	0.000274275	0	0
ZNF699	374879	broad.mit.edu	37	19	9413135	9413135	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:9413135C>T	uc002mlc.1	-	2	94	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCCATTCCTCCTGGGTA	0.443													31	52					0	0	0.00283554	0	0
C19orf39	126074	broad.mit.edu	37	19	11486272	11486272	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:11486272C>T	uc002mrg.1	+	2	307	c.270C>T	c.(268-270)CCC>CCT	p.P90P		NM_175871	NP_787067	Q6NVH7	CS039_HUMAN	hypothetical protein LOC126074	90											0						GGCCAGCCCCCTCCCTTCTGC	0.607													46	63					0	0	0.000680045	0	0
ZNF627	199692	broad.mit.edu	37	19	11728123	11728123	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:11728123C>T	uc002msk.2	+	4	1013	c.805C>T	c.(805-807)CAT>TAT	p.H269Y	ZNF627_uc010dyf.2_Missense_Mutation_p.H159Y	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	269	C2H2-type 5.			H -> R (in Ref. 2; AAH98416).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CATTCGAATCCATGAACGAAC	0.448													7	15					0	0	0.00198382	0	0
ZNF563	147837	broad.mit.edu	37	19	12429625	12429625	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:12429625G>A	uc002mtp.2	-	4	1452	c.1214C>T	c.(1213-1215)CCT>CTT	p.P405L		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	405	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACATACACTAGGATAAACAAA	0.413													67	76					0	0	0.000781405	0	0
ASNA1	439	broad.mit.edu	37	19	12848457	12848457	+	Silent	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:12848457T>G	uc002muv.2	+	1	152	c.138T>G	c.(136-138)GGT>GGG	p.G46G	C19orf43_uc002muu.2_5'Flank|ASNA1_uc002muw.2_Silent_p.G46G	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	46	ATP (By similarity).				response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	GGGGCAAGGGTGGTGTGGGCA	0.612													11	19					0	0	0.000978159	0	0
PKN1	5585	broad.mit.edu	37	19	14581443	14581443	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:14581443G>A	uc002myp.2	+	20	2661	c.2493G>A	c.(2491-2493)GAG>GAA	p.E831E	PKN1_uc002myq.2_Silent_p.E837E|PKN1_uc002myr.2_Silent_p.E171E	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	831	Protein kinase.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						TCAACGACGAGGTTCGCTACC	0.682													4	21					0	0	0.000602214	0	0
EMR3	84658	broad.mit.edu	37	19	14765810	14765810	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:14765810G>A	uc002mzi.3	-	6	709	c.561C>T	c.(559-561)ATC>ATT	p.I187I	EMR3_uc010dzp.2_Silent_p.I135I|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	187	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TATCGTTTTGGATTTTCAGGA	0.413													16	34					0	0	0.000566183	0	0
SLC1A6	6511	broad.mit.edu	37	19	15072936	15072936	+	Silent	SNP	G	A	A	rs2301853	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:15072936G>A	uc002naa.1	-	5	821	c.813C>T	c.(811-813)CTC>CTT	p.L271L	SLC1A6_uc010dzu.1_Silent_p.L271L|SLC1A6_uc010xod.1_Silent_p.L207L|SLC1A6_uc002nab.2_Silent_p.L271L|SLC1A6_uc002nac.2_Silent_p.L271L	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	271	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	AGAAGACCACGAGGCCCAGGG	0.562													30	46					0	0	0.00283554	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586583	15586583	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:15586583G>A	uc002nbf.3	-	2	1031	c.898C>T	c.(898-900)CTG>TTG	p.L300L	PGLYRP2_uc002nbg.3_Silent_p.L300L	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	300					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						TACTGGCTCAGCAAGTGGCTG	0.622													19	18					0	0	0.00074312	0	0
Unknown	0	broad.mit.edu	37	19	15881996	15881996	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:15881996G>A	uc002nbo.2	-	6		c.902C>T			uc010xor.1_Silent_p.I127I					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		TGTGCTGGAGGATATGCTGGT	0.552													24	31					0	0	0.000586117	0	0
OR10H5	284433	broad.mit.edu	37	19	15905710	15905710	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:15905710C>T	uc010xos.1	+	1	852	c.852C>T	c.(850-852)CCC>CCT	p.P284P		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTCACACCCTTCCTCAGCC	0.527													11	14					0	0	0.000308642	0	0
IL12RB1	3594	broad.mit.edu	37	19	18180356	18180356	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:18180356C>T	uc002nhw.1	-	10	1253	c.1189G>A	c.(1189-1191)GCA>ACA	p.A397T	IL12RB1_uc010xqb.1_Missense_Mutation_p.A397T|IL12RB1_uc002nhx.1_Missense_Mutation_p.A437T	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	397	Extracellular (Potential).|Fibronectin type-III 4.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						AGGCCATTACCCATTCCAGCC	0.617													7	10					0	0	0.00198382	0	0
UPF1	5976	broad.mit.edu	37	19	18976861	18976861	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:18976861C>T	uc002nkg.2	+	23	3554	c.3279C>T	c.(3277-3279)TAC>TAT	p.Y1093Y	UPF1_uc002nkf.2_Silent_p.Y1082Y|UPF1_uc002nkh.2_Silent_p.Y337Y	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	1093	Gln/Ser-rich.				cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						AGGACAGTTACCTTGGTGACG	0.562													10	19					0	0	0.000673444	0	0
GDF1	2657	broad.mit.edu	37	19	18994943	18994943	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:18994943G>A	uc002nki.1	-	3	615	c.543C>T	c.(541-543)CTC>CTT	p.L181L	LASS1_uc002nkj.2_Silent_p.L181L|LASS1_uc010ebx.2_Silent_p.L83L	NM_021267	NP_067090	P27539	GDF1_HUMAN	LAG1 homolog, ceramide synthase 1 isoform 1	Error:Variant_position_missing_in_P27539_after_alignment					growth	extracellular space	cytokine activity|growth factor activity				0						CCACGTGGTGGAGCAGCATGA	0.612													7	14					0	0	0.000157383	0	0
ZNF486	90649	broad.mit.edu	37	19	20296886	20296886	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:20296886C>T	uc002nou.2	+	3	305	c.248C>T	c.(247-249)CCC>CTC	p.P83L		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	83	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATTGCCAAACCCCCAGGTAGG	0.428													19	30					0	0	0.00188189	0	0
ZNF99	7652	broad.mit.edu	37	19	22952122	22952122	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:22952122G>A	uc010xrh.1	-	2	71	c.71C>T	c.(70-72)TCG>TTG	p.S24L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAATGTCAACGATCCCTGAAA	0.388													23	34					0	0	0.00047179	0	0
Unknown	0	broad.mit.edu	37	19	24102931	24102931	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:24102931G>A	uc002nrp.1	-	3		c.537C>T			uc010eda.1_RNA					Homo sapiens cDNA FLJ43698 fis, clone TCERX2000998.																		GAGGTCCAACGTCAAGAAGAA	0.413													9	9					0	0	0.000274275	0	0
GPATCH1	55094	broad.mit.edu	37	19	33579109	33579109	+	Missense_Mutation	SNP	G	A	A	rs150368616	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:33579109G>A	uc002nug.1	+	2	457	c.143G>A	c.(142-144)CGA>CAA	p.R48Q		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	48						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					AGGTATAAACGATTCCACGGG	0.343													39	55					0	0	0.00148497	0	0
ZNF345	25850	broad.mit.edu	37	19	37368585	37368586	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:37368585_37368586CC>TT	uc002oex.2	+	3	1231_1232	c.853_854CC>TT	c.(853-855)CCT>TTT	p.P285F	ZNF345_uc002oey.3_Missense_Mutation_p.P285F|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	285					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGGTGAGAAACCTTATGTATGT	0.406													24	41					0	0	6.4e-05	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677733	37677733	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:37677733G>A	uc002ofq.2	-	5	960	c.706C>T	c.(706-708)CAT>TAT	p.H236Y	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.H50Y	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	236	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCCAGTATGAATTTTCTCA	0.408													37	51					0	0	0.000953801	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38590622	38590622	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:38590622C>T	uc002ohk.2	+	5	2195	c.1686C>T	c.(1684-1686)TCC>TCT	p.S562S		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	562					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TGCGGGGCTCCATCCTGGAAG	0.572													22	29					0	0	0.000586117	0	0
SPINT2	10653	broad.mit.edu	37	19	38774365	38774365	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:38774365G>A	uc002ohr.1	+	2	536	c.205G>A	c.(205-207)GGG>AGG	p.G69R	SPINT2_uc002ohs.1_Intron	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	69	Extracellular (Potential).|BPTI/Kunitz inhibitor 1.				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GTTTGTGTATGGGGGCTGTGA	0.532													44	56					0	0	0.00195071	0	0
CATSPERG	57828	broad.mit.edu	37	19	38850215	38850215	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:38850215G>A	uc002oih.3	+	14	1689	c.1602G>A	c.(1600-1602)ACG>ACA	p.T534T	CATSPERG_uc002oig.3_Silent_p.T494T|CATSPERG_uc002oif.3_Silent_p.T174T|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	534	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TCACAGAGACGGAGGAGGTGG	0.597													12	17					0	0	0.000978159	0	0
RYR1	6261	broad.mit.edu	37	19	38948853	38948853	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:38948853G>A	uc002oit.2	+	18	2218	c.2088G>A	c.(2086-2088)GGG>GGA	p.G696G	RYR1_uc002oiu.2_Silent_p.G696G	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	696	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTACCCTGGGGCCGGCGAGG	0.647													15	30					0	0	0.000566183	0	0
RYR1	6261	broad.mit.edu	37	19	39075687	39075687	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:39075687C>T	uc002oit.2	+	102	14881	c.14751C>T	c.(14749-14751)TTC>TTT	p.F4917F	RYR1_uc002oiu.2_Silent_p.F4912F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4917					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGTGGTCTTCGACATCACCT	0.567													13	15					0	0	0.00185496	0	0
ATP1A3	478	broad.mit.edu	37	19	42474413	42474413	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:42474413C>T	uc002osg.2	-	18	2620	c.2466G>A	c.(2464-2466)ATG>ATA	p.M822I	ATP1A3_uc010xwf.1_Missense_Mutation_p.M833I|ATP1A3_uc010xwg.1_Missense_Mutation_p.M792I|ATP1A3_uc010xwh.1_Missense_Mutation_p.M835I|ATP1A3_uc002osh.2_Missense_Mutation_p.M822I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	822	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GCTGTCTCTTCATGATGTCGC	0.627													21	17					0	0	0.00229938	0	0
PSG1	5669	broad.mit.edu	37	19	43376041	43376041	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:43376041G>A	uc002ovb.2	-	3	725	c.587C>T	c.(586-588)TCC>TTC	p.S196F	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.S196F|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.S196F|PSG1_uc010eio.1_Missense_Mutation_p.S196F|PSG1_uc002oux.1_Missense_Mutation_p.S125F|PSG1_uc002ouy.1_Missense_Mutation_p.S196F|PSG1_uc002ouz.1_Missense_Mutation_p.S196F|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.S196F	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	196	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GTTGGTTTCGGACAGCTTCAA	0.522													82	102					0	0	0.000781405	0	0
PSG7	5676	broad.mit.edu	37	19	43430819	43430819	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:43430819C>T	uc002ovl.3	-	5	861	c.759G>A	c.(757-759)GAG>GAA	p.E253E	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.E131E	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	253	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CATCCTTATTCTCCCTGGGGT	0.483													49	107					0	0	0.000781405	0	0
PSG4	5672	broad.mit.edu	37	19	43698546	43698546	+	Missense_Mutation	SNP	G	A	A	rs138668740		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:43698546G>A	uc002ovy.2	-	5	1291	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.R304C|PSG4_uc002ovz.2_Missense_Mutation_p.R304C	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	397	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GCTGAGTTACGAACAGAGCAA	0.448													81	85					0	0	0.000781405	0	0
PSG4	5672	broad.mit.edu	37	19	43699279	43699279	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:43699279C>T	uc002ovy.2	-	4	958	c.856G>A	c.(856-858)GTA>ATA	p.V286I	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.V193I|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	286	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GGTCGCTTTACCCTGGGACTG	0.448													85	121					0	0	0.000781405	0	0
ZNF234	10780	broad.mit.edu	37	19	44661600	44661600	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:44661600C>T	uc002oym.2	+	6	1738	c.1431C>T	c.(1429-1431)ATC>ATT	p.I477I	ZNF234_uc002oyl.3_Silent_p.I477I	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	477	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				ACCAGCTGATCCATACCGGTG	0.438													32	39					0	0	0.00178596	0	0
GRLF1	2909	broad.mit.edu	37	19	47424004	47424004	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:47424004A>C	uc010ekv.2	+	1	2072	c.2072A>C	c.(2071-2073)AAT>ACT	p.N691T		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	691					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CGGCGGGATAATCATTTAGTC	0.453													7	12					0	0	0.00198382	0	0
FGF21	26291	broad.mit.edu	37	19	49261309	49261309	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:49261309G>A	uc002pkn.1	+	4	1034	c.462G>A	c.(460-462)CGG>CGA	p.R154R	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.R154R	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	154					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCCCACACCGGGACCCTGCAC	0.682													17	28					0	0	0.000422831	0	0
DHDH	27294	broad.mit.edu	37	19	49442803	49442803	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:49442803G>A	uc002ple.1	+	4	504	c.464G>A	c.(463-465)GGG>GAG	p.G155E		NM_014475	NP_055290	Q9UQ10	DHDH_HUMAN	dimeric dihydrodiol dehydrogenase	155					carbohydrate metabolic process		binding|D-xylose 1-dehydrogenase (NADP+) activity|electron carrier activity|NAD(P)+ transhydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000158)|all cancers(93;0.000258)|Epithelial(262;0.0173)|GBM - Glioblastoma multiforme(486;0.0179)		GCAGAATTTGGGAAGAATCTC	0.627													29	32					0	0	0.00106085	0	0
GYS1	2997	broad.mit.edu	37	19	49490544	49490544	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:49490544G>A	uc002plp.2	-	3	640	c.399C>T	c.(397-399)CTC>CTT	p.L133L	GYS1_uc010xzy.1_Intron|GYS1_uc010emm.2_Intron|GYS1_uc010xzz.1_Silent_p.L53L|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	133					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		AGGTATCCCAGAGCTCTCCCT	0.637													12	6					0	0	0.00136819	0	0
KCNA7	3743	broad.mit.edu	37	19	49573344	49573344	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:49573344C>T	uc002pmg.2	-	2	1703	c.1347G>A	c.(1345-1347)GGG>GGA	p.G449G		NM_031886	NP_114092	Q96RP8	KCNA7_HUMAN	potassium voltage-gated channel, shaker-related	449						voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(1)	1		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000397)|OV - Ovarian serous cystadenocarcinoma(262;0.000519)|GBM - Glioblastoma multiforme(486;0.00541)|Epithelial(262;0.0441)		CCAGGTGTTTCCCTGGGGGTG	0.502													25	44					0	0	0.00127121	0	0
PNKP	11284	broad.mit.edu	37	19	50368642	50368642	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:50368642C>T	uc002pqh.2	-	3	292	c.240G>A	c.(238-240)AAG>AAA	p.K80K	PNKP_uc002pqg.2_5'UTR|PNKP_uc002pqi.2_Silent_p.K41K|PNKP_uc002pqj.2_Silent_p.K80K|PNKP_uc010enm.2_Silent_p.K80K|PNKP_uc002pqk.2_Silent_p.K80K	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	80					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		CCAACCCCGGCTTCAACTCCT	0.627								Other_BER_factors					7	7					0	0	0.00198382	0	0
POLD1	5424	broad.mit.edu	37	19	50909675	50909675	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:50909675G>A	uc002psb.3	+	12	1451	c.1395G>A	c.(1393-1395)CGG>CGA	p.R465R	POLD1_uc002psc.3_Silent_p.R465R|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.R465R	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	465					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		TGCTGCTGCGGGAGTACAAGC	0.652								DNA_polymerases_(catalytic_subunits)					6	5					0	0	0.00116845	0	0
SYT3	84258	broad.mit.edu	37	19	51133319	51133319	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:51133319C>T	uc002pst.2	-	3	1418	c.784G>A	c.(784-786)GAA>AAA	p.E262K	SYT3_uc002psv.2_Missense_Mutation_p.E262K|SYT3_uc010ycd.1_Missense_Mutation_p.E262K	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	262	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		TTGGCTTTTTCCTCGCCTCCA	0.682													28	37					0	0	0.001512	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986374	51986374	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:51986374C>T	uc002pwv.1	+	5	960	c.960C>T	c.(958-960)TCC>TCT	p.S320S		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	320	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCTGCTATTCCTTCCTGGATC	0.522													63	75					0	0	0.000781405	0	0
ZNF649	65251	broad.mit.edu	37	19	52394736	52394736	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:52394736T>C	uc002pxy.2	-	5	921	c.653A>G	c.(652-654)AAG>AGG	p.K218R	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	218	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		GAGCCTGTACTTCTTGTAGAA	0.483													3	101					0	0	6.4e-05	0	0
ZNF701	55762	broad.mit.edu	37	19	53086149	53086149	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53086149C>T	uc002pzs.1	+	4	964	c.837C>T	c.(835-837)TTC>TTT	p.F279F	ZNF701_uc010ydn.1_Silent_p.F345F	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	279	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		GCAAGACATTCAGTCACAATT	0.418													17	22					0	0	0.000566183	0	0
ZNF83	55769	broad.mit.edu	37	19	53116680	53116680	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53116680T>C	uc002pzu.3	-	2	2382	c.1138A>G	c.(1138-1140)AAA>GAA	p.K380E	ZNF83_uc002pzv.3_Missense_Mutation_p.K380E|ZNF83_uc010eps.2_Missense_Mutation_p.K352E|ZNF83_uc010ept.2_Missense_Mutation_p.K380E|ZNF83_uc010epu.2_Missense_Mutation_p.K380E|ZNF83_uc010epv.2_Missense_Mutation_p.K380E|ZNF83_uc010epw.2_Missense_Mutation_p.K380E|ZNF83_uc010epx.2_Missense_Mutation_p.K352E|ZNF83_uc010epy.2_Missense_Mutation_p.K380E|ZNF83_uc010epz.2_Missense_Mutation_p.K352E	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	380	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		CTGAATGCTTTGTCACATTCA	0.383													27	46					0	0	0.00209593	0	0
ZNF83	55769	broad.mit.edu	37	19	53117670	53117670	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53117670T>A	uc002pzu.3	-	2	1392	c.148A>T	c.(148-150)AGT>TGT	p.S50C	ZNF83_uc002pzv.3_Missense_Mutation_p.S50C|ZNF83_uc010eps.2_Missense_Mutation_p.S50C|ZNF83_uc010ept.2_Missense_Mutation_p.S50C|ZNF83_uc010epu.2_Missense_Mutation_p.S50C|ZNF83_uc010epv.2_Missense_Mutation_p.S50C|ZNF83_uc010epw.2_Missense_Mutation_p.S50C|ZNF83_uc010epx.2_Missense_Mutation_p.S50C|ZNF83_uc010epy.2_Missense_Mutation_p.S50C|ZNF83_uc010epz.2_Missense_Mutation_p.S50C|ZNF83_uc010eqb.1_Missense_Mutation_p.S50C	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	50						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		ACTAAGGAACTACTGTTGACA	0.363													21	40					0	0	0.00152264	0	0
ZNF611	81856	broad.mit.edu	37	19	53208329	53208329	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53208329A>T	uc002pzz.2	-	7	2296	c.1979T>A	c.(1978-1980)GTG>GAG	p.V660E	ZNF611_uc010eqc.2_Missense_Mutation_p.V590E|ZNF611_uc010ydo.1_Missense_Mutation_p.V590E|ZNF611_uc010ydr.1_Missense_Mutation_p.V591E|ZNF611_uc010ydp.1_Missense_Mutation_p.V660E|ZNF611_uc010ydq.1_Missense_Mutation_p.V660E|ZNF611_uc002qaa.3_Missense_Mutation_p.V590E	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	660	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		TGAATTACGCACGAAAGCCTT	0.403													54	77					0	0	0.000781405	0	0
ZNF611	81856	broad.mit.edu	37	19	53208656	53208656	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53208656G>A	uc002pzz.2	-	7	1969	c.1652C>T	c.(1651-1653)TCC>TTC	p.S551F	ZNF611_uc010eqc.2_Missense_Mutation_p.S481F|ZNF611_uc010ydo.1_Missense_Mutation_p.S481F|ZNF611_uc010ydr.1_Missense_Mutation_p.S482F|ZNF611_uc010ydp.1_Missense_Mutation_p.S551F|ZNF611_uc010ydq.1_Missense_Mutation_p.S551F|ZNF611_uc002qaa.3_Missense_Mutation_p.S481F	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	551	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		TGCCAGATAGGAATGACACGC	0.403													78	109					0	0	0.000781405	0	0
ZNF28	7576	broad.mit.edu	37	19	53302989	53302989	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53302989C>A	uc002qad.2	-	4	2229	c.2109G>T	c.(2107-2109)ATG>ATT	p.M703I	ZNF28_uc002qac.2_Missense_Mutation_p.M650I|ZNF28_uc010eqe.2_Missense_Mutation_p.M649I	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	703	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		CAAGGTTTGACATCTGACTGA	0.413													42	56					5.20837e-25	2.38656e-24	0.00195071	1	0
ZNF320	162967	broad.mit.edu	37	19	53384412	53384412	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53384412G>A	uc002qag.2	-	4	1158	c.967C>T	c.(967-969)CAC>TAC	p.H323Y	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.H269Y|ZNF320_uc002qai.2_Missense_Mutation_p.H323Y	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	323	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TCTCCAGTGTGAACTCTACGA	0.408													21	39					0	0	0.00152264	0	0
VN1R4	317703	broad.mit.edu	37	19	53770837	53770837	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:53770837G>A	uc010ydu.1	-	1	82	c.82C>T	c.(82-84)CAT>TAT	p.H28Y		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	28	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		GAGAGATAATGGAGAAGAACA	0.498										HNSCC(26;0.072)			21	42					0	0	0.00152264	0	0
ZNF331	55422	broad.mit.edu	37	19	54080169	54080169	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:54080169C>T	uc002qbx.1	+	7	1789	c.355C>T	c.(355-357)CCT>TCT	p.P119S	ZNF331_uc002qby.1_Missense_Mutation_p.P119S|ZNF331_uc002qbz.1_Missense_Mutation_p.P119S|ZNF331_uc002qca.1_Missense_Mutation_p.P119S|ZNF331_uc010eqr.1_Missense_Mutation_p.P119S|ZNF331_uc002qcb.1_Missense_Mutation_p.P119S|ZNF331_uc002qcc.1_Missense_Mutation_p.P119S|ZNF331_uc002qcd.1_Missense_Mutation_p.P119S	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		AGGCACCCCTCCTAGAACACA	0.438			T	?	follicular thyroid adenoma								46	53					0	0	0.000781405	0	0
OSCAR	126014	broad.mit.edu	37	19	54600243	54600243	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:54600243G>A	uc002qdd.2	-	4	471	c.354C>T	c.(352-354)GCC>GCT	p.A118A	OSCAR_uc002qcy.2_Silent_p.A97A|OSCAR_uc002qcz.2_Silent_p.A93A|OSCAR_uc002qda.2_Silent_p.A97A|OSCAR_uc002qdb.2_Silent_p.A82A|OSCAR_uc010erc.2_Missense_Mutation_p.P61S|OSCAR_uc002qdc.2_Silent_p.A107A	NM_206818	NP_996554	Q8IYS5	OSCAR_HUMAN	osteoclast-associated receptor isoform 1	93	Ig-like 1.					extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)					TTCCCCCTTGGGCTGGAGTCA	0.602													17	17					0	0	0.00074312	0	0
TFPT	29844	broad.mit.edu	37	19	54611338	54611338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:54611338C>T	uc010yej.1	-	5	1043	c.637G>A	c.(637-639)GTG>ATG	p.V213M		NM_013342	NP_037474	P0C1Z6	TFPT_HUMAN	TCF3 (E2A) fusion partner	213					apoptosis|DNA recombination|DNA repair|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex	DNA binding|protein binding				0	all_cancers(19;0.004)|all_epithelial(19;0.00195)|all_lung(19;0.0193)|Lung NSC(19;0.0358)|Breast(117;0.137)|Ovarian(34;0.19)					CTCACCTGCACCGGGGCCAGC	0.711			T	TCF3	pre-B ALL								18	40					0	0	0.00229938	0	0
LILRB3	11025	broad.mit.edu	37	19	54725813	54725813	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:54725813G>A	uc002qef.1	-	4	656	c.545C>T	c.(544-546)CCT>CTT	p.P182L	LILRB3_uc002qee.1_Missense_Mutation_p.P182L|LILRB3_uc002qeh.1_Missense_Mutation_p.P182L|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Intron|LILRB3_uc010erh.1_Missense_Mutation_p.P182L|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Intron|LILRA6_uc002qem.1_Intron|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Intron|LILRB3_uc002qep.1_Missense_Mutation_p.P182L|LILRB3_uc002qeq.1_Intron|LILRB3_uc002qer.1_Intron|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Intron|LILRA6_uc010yeq.1_Intron	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	182	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGGCCCACAGGGAACAGGGC	0.592													8	11					0	0	0.00244969	0	0
LILRB4	11006	broad.mit.edu	37	19	55179098	55179098	+	Missense_Mutation	SNP	G	A	A	rs146325339	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:55179098G>A	uc002qgp.2	+	11	1416	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N	LILRB4_uc002qgq.2_Missense_Mutation_p.D351N|LILRB4_uc002qgr.2_Missense_Mutation_p.D394N|LILRB4_uc010ert.2_Missense_Mutation_p.D393N|LILRB4_uc010eru.2_Missense_Mutation_p.D382N	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGCCCACACGATGAAGACCC	0.567													13	14					0	0	0.000422831	0	0
LILRP2	79166	broad.mit.edu	37	19	55221914	55221914	+	RNA	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:55221914C>A	uc002qgs.1	+	1		c.2314C>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GACCCTCCCTCTCGGTGCAGC	0.642													10	17					2.80697e-09	1.27108e-08	0.000978159	1	0
KIR2DL3	3804	broad.mit.edu	37	19	55263104	55263104	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:55263104A>G	uc002qgv.2	+	6	737	c.719A>G	c.(718-720)AAC>AGC	p.N240S	KIR2DL3_uc002qgx.2_Missense_Mutation_p.N240S|KIR2DL3_uc002qgy.2_Missense_Mutation_p.N142S|KIR2DL3_uc010erw.1_Missense_Mutation_p.N240S|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	240	Extracellular (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		CTTCCAGGTAACCCCAGACAC	0.348													30	81					0	0	0.000814825	0	0
EPN1	29924	broad.mit.edu	37	19	56206167	56206167	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:56206167C>T	uc002qlw.2	+	10	1682	c.1340C>T	c.(1339-1341)TCT>TTT	p.S447F	EPN1_uc002qlv.2_Missense_Mutation_p.S421F|EPN1_uc010etd.2_Missense_Mutation_p.S446F|EPN1_uc002qlx.2_Missense_Mutation_p.S533F	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	447	Ala/Gly/Pro-rich.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		GTCAGGGGATCTCTGGCTGAG	0.687													10	20					0	0	0.000673444	0	0
NLRP13	126204	broad.mit.edu	37	19	56423233	56423233	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:56423233G>A	uc010ygg.1	-	5	1975	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	650							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCTTCTTTGTGAAGTCTTCCT	0.423													33	53					0	0	0.00283554	0	0
ZNF667	63934	broad.mit.edu	37	19	56952992	56952992	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:56952992G>A	uc002qnd.2	-	5	1534	c.1372C>T	c.(1372-1374)CTT>TTT	p.L458F	ZNF667_uc010etl.2_Missense_Mutation_p.L240F|ZNF667_uc002qne.2_Missense_Mutation_p.L458F|ZNF667_uc010etm.2_Missense_Mutation_p.L401F	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	458	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TGTTCAATAAGAAATGATTGG	0.373													22	31					0	0	0.000586117	0	0
ZNF548	147694	broad.mit.edu	37	19	57911020	57911020	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:57911020G>A	uc002qom.2	+	3	1615	c.1365G>A	c.(1363-1365)GGG>GGA	p.G455G	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Silent_p.G458G	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	455	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAGAGTGTGGGAAAGCCTTTA	0.448													21	30					0	0	0.00229938	0	0
ZNF773	374928	broad.mit.edu	37	19	58017786	58017786	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:58017786C>T	uc002qox.2	+	4	463	c.323C>T	c.(322-324)CCA>CTA	p.P108L	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Missense_Mutation_p.P107L|ZNF773_uc002qoz.2_Intron	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		GTAGAAGTGCCCAGTTCAAAC	0.483													38	61					0	0	0.000953801	0	0
ZNF814	730051	broad.mit.edu	37	19	58384955	58384955	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:58384955C>T	uc002qqo.2	-	3	2075	c.1803G>A	c.(1801-1803)GAG>GAA	p.E601E	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	601					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						CATAAGGCCTCTCTCCAGTAT	0.473													23	14					0	0	0.000720815	0	0
ZNF417	147687	broad.mit.edu	37	19	58420218	58420218	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:58420218C>T	uc002qqq.2	-	3	1627	c.1428G>A	c.(1426-1428)AAG>AAA	p.K476K	ZNF417_uc010yhm.1_Silent_p.K433K|ZNF417_uc002qqr.2_Silent_p.K475K	NM_152475	NP_689688	Q8TAU3	ZN417_HUMAN	zinc finger protein 417	476	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0151)		TCACGCAGTTCTTATTACCAA	0.408													40	54					0	0	0.000781405	0	0
ZNF135	7694	broad.mit.edu	37	19	58574891	58574891	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:58574891C>T	uc010yhq.1	+	4	334	c.238C>T	c.(238-240)CCC>TCC	p.P80S	ZNF135_uc002qre.2_Missense_Mutation_p.P80S|ZNF135_uc002qrd.1_Missense_Mutation_p.P38S|ZNF135_uc002qrf.2_Missense_Mutation_p.P38S|ZNF135_uc002qrg.2_Missense_Mutation_p.P38S|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	80					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GTCTAGACTTCCCCAAGGCGT	0.567													19	25					0	0	0.000958276	0	0
TPO	7173	broad.mit.edu	37	2	1426834	1426834	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:1426834C>T	uc002qww.2	+	3	203	c.112C>T	c.(112-114)CGT>TGT	p.R38C	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.R38C|TPO_uc002qwu.2_Missense_Mutation_p.R38C|TPO_uc002qwr.2_Missense_Mutation_p.R38C|TPO_uc002qwx.2_Missense_Mutation_p.R38C|TPO_uc010yio.1_Missense_Mutation_p.R38C|TPO_uc010yip.1_Missense_Mutation_p.R38C	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	38	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TGAGGAGTCTCGTGTCTCTAG	0.562													10	26					0	0	0.000442599	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765453	18765453	+	Silent	SNP	C	T	T	rs151116969		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:18765453C>T	uc002rcz.2	-	6	1076	c.972G>A	c.(970-972)AGG>AGA	p.R324R	NT5C1B_uc002rcy.2_Silent_p.R324R|NT5C1B_uc010exr.2_Silent_p.R266R|NT5C1B_uc010yju.1_Silent_p.R264R|NT5C1B_uc002rda.2_Silent_p.R264R|NT5C1B_uc010yjv.1_Silent_p.R341R|NT5C1B_uc010yjw.1_Silent_p.R307R|NT5C1B_uc010exs.2_Silent_p.R326R|NT5C1B_uc002rdb.1_Silent_p.R116R	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	324					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding	p.R324R(1)		skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CGTAGATTTTCCTGCCGTCCA	0.562													54	69					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21232326	21232326	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:21232326C>T	uc002red.2	-	26	7542	c.7414G>A	c.(7414-7416)GAA>AAA	p.E2472K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2472					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCCTTGGTTTCCTCTAAAAAC	0.408													167	253					0	0	0.000781405	0	0
HADHA	3030	broad.mit.edu	37	2	26426955	26426956	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:26426955_26426956CG>AT	uc002rgy.2	-	12	1325_1326	c.1195_1196CG>AT	c.(1195-1197)CGA>ATA	p.R399I	HADHA_uc010yks.1_Missense_Mutation_p.R312I	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	399					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	TTGCTGTCCTCGGTCTAGCGCA	0.485													7	303					0	0	6.4e-05	0	0
OTOF	9381	broad.mit.edu	37	2	26703657	26703657	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:26703657C>T	uc002rhk.2	-	15	1927	c.1800G>A	c.(1798-1800)TCG>TCA	p.S600S	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	600	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTCTCACCTCCGAGATGGGCG	0.667													13	26					0	0	0.00244969	0	0
CAD	790	broad.mit.edu	37	2	27447350	27447350	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:27447350G>A	uc002rji.2	+	9	1408	c.1246G>A	c.(1246-1248)GGC>AGC	p.G416S	CAD_uc010eyw.2_Missense_Mutation_p.G416S	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	416	CPSase (Carbamoyl-phosphate synthase).|CPSase A.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGACTACTCGGGCTCTCAGGT	0.567													25	42					0	0	0.000586117	0	0
IFT172	26160	broad.mit.edu	37	2	27676565	27676565	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:27676565G>T	uc002rku.2	-	34	3804	c.3753C>A	c.(3751-3753)GAC>GAA	p.D1251E	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1251					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TGGGCACATAGTCCTTGCAGA	0.577													26	37					1.68575e-08	7.61679e-08	0.00127121	1	0
IFT172	26160	broad.mit.edu	37	2	27700945	27700945	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:27700945T>C	uc002rku.2	-	11	1135	c.1084A>G	c.(1084-1086)ATC>GTC	p.I362V	IFT172_uc002rkw.2_Missense_Mutation_p.I362V|IFT172_uc010yls.1_Missense_Mutation_p.I341V|IFT172_uc010ezc.2_Missense_Mutation_p.I362V|IFT172_uc002rkv.2_Missense_Mutation_p.I336V	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	362					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TTTCCTAGGATTTTCACCTCT	0.478													67	78					0	0	0.000781405	0	0
C2orf16	84226	broad.mit.edu	37	2	27801313	27801313	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:27801313G>A	uc002rkz.3	+	1	1925	c.1874G>A	c.(1873-1875)GGA>GAA	p.G625E		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	625										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTAGAATCAGGAATTGAAGCA	0.423													18	24					0	0	0.00074312	0	0
C2orf16	84226	broad.mit.edu	37	2	27802577	27802578	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:27802577_27802578GG>TA	uc002rkz.3	+	1	3189_3190	c.3138_3139GG>TA	c.(3136-3141)ATGGAA>ATTAAA	p.1046_1047ME>IK		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1046_1047										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTGTTCCAATGGAAGAAAGTGA	0.47													40	55					0	0	6.4e-05	0	0
PLB1	151056	broad.mit.edu	37	2	28741348	28741348	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:28741348C>T	uc002rmb.1	+	3	133	c.133C>T	c.(133-135)CCA>TCA	p.P45S	PLB1_uc010ezj.1_Missense_Mutation_p.P45S	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	45	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GAAGAATTCTCCATTCCCATG	0.408													30	38					0	0	0.000814825	0	0
FAM179A	165186	broad.mit.edu	37	2	29240726	29240726	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:29240726G>A	uc010ezl.2	+	10	1615	c.1264G>A	c.(1264-1266)GAC>AAC	p.D422N	FAM179A_uc010ymm.1_Intron|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	422							binding			ovary(3)|skin(1)	4						ATGCAGAAACGACGTCAGCAT	0.667													9	17					0	0	0.000442599	0	0
CLIP4	79745	broad.mit.edu	37	2	29366724	29366724	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:29366724C>T	uc002rmv.2	+	7	1037	c.798C>T	c.(796-798)CTC>CTT	p.L266L	CLIP4_uc002rmu.2_Silent_p.L266L|CLIP4_uc010ezm.1_Silent_p.L266L|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Silent_p.L248L	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	266										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGGCCATGCTCCCAAATTATG	0.488													25	36					0	0	0.00047179	0	0
HEATR5B	54497	broad.mit.edu	37	2	37285625	37285625	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:37285625G>A	uc002rpp.1	-	14	2124	c.2028C>T	c.(2026-2028)ATC>ATT	p.I676I		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	676							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ACAAAGCCAAGATATCATAAA	0.318													24	36					0	0	0.000720815	0	0
TTC7A	57217	broad.mit.edu	37	2	47300885	47300885	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:47300885G>A	uc002rvo.2	+	20	2768	c.2400G>A	c.(2398-2400)AAG>AAA	p.K800K	TTC7A_uc002rvm.2_Silent_p.K766K|TTC7A_uc010fbb.2_Silent_p.K824K|TTC7A_uc010fbc.2_Silent_p.K446K|TTC7A_uc002rvp.2_Silent_p.K681K|C2orf61_uc010fbd.2_Intron|TTC7A_uc002rvq.2_Silent_p.K540K|TTC7A_uc002rvr.2_Silent_p.K249K	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	800	TPR 8.						binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			TGGCCCAGAAGGTGCTTCGTG	0.652													28	46					0	0	0.00209593	0	0
NRXN1	9378	broad.mit.edu	37	2	50850507	50850507	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:50850507C>T	uc010fbq.2	-	6	2655	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E	NRXN1_uc002rxb.3_Missense_Mutation_p.G40E|NRXN1_uc002rxe.3_Missense_Mutation_p.G360E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATTAAACTTTCCATTCACAGG	0.458													6	11					0	0	0.00116845	0	0
C2orf63	130162	broad.mit.edu	37	2	55404787	55404787	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:55404787C>T	uc002ryi.2	-	12	1861	c.1515G>A	c.(1513-1515)ATG>ATA	p.M505I	C2orf63_uc002ryh.2_Missense_Mutation_p.M56I|C2orf63_uc002ryj.2_Missense_Mutation_p.M383I	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	505							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			CAACTTTTTTCATGTCTGCAG	0.358													34	34					0	0	0.000692331	0	0
VRK2	7444	broad.mit.edu	37	2	58359036	58359036	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:58359036C>T	uc002rzo.2	+	12	1515	c.770C>T	c.(769-771)CCT>CTT	p.P257L	VRK2_uc010fcb.2_Missense_Mutation_p.P257L|VRK2_uc002rzs.2_Missense_Mutation_p.P257L|VRK2_uc002rzr.2_Missense_Mutation_p.P257L|VRK2_uc010fcc.2_Missense_Mutation_p.P139L|VRK2_uc002rzv.2_Missense_Mutation_p.P257L|VRK2_uc010fcd.2_Missense_Mutation_p.P234L|VRK2_uc002rzp.2_Missense_Mutation_p.P257L|VRK2_uc010ypg.1_Missense_Mutation_p.P257L|VRK2_uc002rzq.2_Missense_Mutation_p.P257L|VRK2_uc002rzu.2_Missense_Mutation_p.P257L|VRK2_uc002rzt.2_Missense_Mutation_p.P139L|VRK2_uc010yph.1_Missense_Mutation_p.P139L	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	257	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						CTGAAGGACCCTGTGGCTGTG	0.478													13	20					0	0	0.00185496	0	0
BCL11A	53335	broad.mit.edu	37	2	60689430	60689430	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:60689430G>A	uc002sae.1	-	4	845	c.617C>T	c.(616-618)CCC>CTC	p.P206L	BCL11A_uc002sab.2_Missense_Mutation_p.P206L|BCL11A_uc002sac.2_Missense_Mutation_p.P206L|BCL11A_uc010ypi.1_Missense_Mutation_p.P54L|BCL11A_uc010ypj.1_Missense_Mutation_p.P172L|BCL11A_uc002sad.1_Missense_Mutation_p.P54L|BCL11A_uc002saf.1_Missense_Mutation_p.P172L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	206	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CGGGGTCAGGGGACTTCCGTG	0.488			T	IGH@	B-CLL								172	230					0	0	0.000781405	0	0
PAPOLG	64895	broad.mit.edu	37	2	61002230	61002230	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:61002230C>T	uc002sai.2	+	8	897	c.666C>T	c.(664-666)ACC>ACT	p.T222T	PAPOLG_uc002saj.2_5'UTR|PAPOLG_uc002sak.2_5'UTR	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	222					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			TTAGACTCACCCTAAGAGCTG	0.323													12	45					0	0	0.00185496	0	0
FIGLA	344018	broad.mit.edu	37	2	71012684	71012685	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:71012684_71012685GG>TT	uc002she.1	-	3	476_477	c.471_472CC>AA	c.(469-474)ACCCAA>ACAAAA	p.Q158K		NM_001004311	NP_001004311	Q6QHK4	FIGLA_HUMAN	factor in the germline alpha	158					multicellular organismal development|oocyte development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcription factor complex	DNA binding|transcription factor binding				0						CTGATATGTTGGGTGATGTTTC	0.485													12	374					0	0	6.4e-05	0	0
DYSF	8291	broad.mit.edu	37	2	71780979	71780979	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:71780979T>G	uc002sie.2	+	21	2349	c.1973T>G	c.(1972-1974)GTG>GGG	p.V658G	DYSF_uc010feg.2_Missense_Mutation_p.V689G|DYSF_uc010feh.2_Missense_Mutation_p.V644G|DYSF_uc002sig.3_Missense_Mutation_p.V644G|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.V658G|DYSF_uc010fef.2_Missense_Mutation_p.V675G|DYSF_uc010fei.2_Missense_Mutation_p.V675G|DYSF_uc010fek.2_Missense_Mutation_p.V676G|DYSF_uc010fej.2_Missense_Mutation_p.V645G|DYSF_uc010fel.2_Missense_Mutation_p.V645G|DYSF_uc010feo.2_Missense_Mutation_p.V690G|DYSF_uc010fem.2_Missense_Mutation_p.V659G|DYSF_uc010fen.2_Missense_Mutation_p.V676G|DYSF_uc002sif.2_Missense_Mutation_p.V659G	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	658	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTGAAACCTGTGGTGGTGCTG	0.587													16	12					0	0	0.000422831	0	0
DYSF	8291	broad.mit.edu	37	2	71892337	71892338	+	Missense_Mutation	DNP	CC	TT	TT	rs11558178		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:71892337_71892338CC>TT	uc002sie.2	+	46	5479_5480	c.5103_5104CC>TT	c.(5101-5106)CTCCTC>CTTTTC	p.L1702F	DYSF_uc010feg.2_Missense_Mutation_p.L1733F|DYSF_uc010feh.2_Missense_Mutation_p.L1709F|DYSF_uc002sig.3_Missense_Mutation_p.L1688F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.L1723F|DYSF_uc010fef.2_Missense_Mutation_p.L1740F|DYSF_uc010fei.2_Missense_Mutation_p.L1719F|DYSF_uc010fek.2_Missense_Mutation_p.L1720F|DYSF_uc010fej.2_Missense_Mutation_p.L1710F|DYSF_uc010fel.2_Missense_Mutation_p.L1689F|DYSF_uc010feo.2_Missense_Mutation_p.L1734F|DYSF_uc010fem.2_Missense_Mutation_p.L1724F|DYSF_uc010fen.2_Missense_Mutation_p.L1741F|DYSF_uc002sif.2_Missense_Mutation_p.L1703F|DYSF_uc010yqy.1_Missense_Mutation_p.L583F|DYSF_uc010yqz.1_Missense_Mutation_p.L463F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1702	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCTCCCAGCTCCTCCACCTCTT	0.525													30	50					0	0	6.4e-05	0	0
RTKN	6242	broad.mit.edu	37	2	74657620	74657620	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:74657620C>T	uc002sle.2	-	4	516	c.399G>A	c.(397-399)AAG>AAA	p.K133K	RTKN_uc002slc.2_Silent_p.K120K|RTKN_uc002sld.2_Silent_p.K83K	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	133					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						ATTCTGTGTCCTTCCACATGA	0.532													27	37					0	0	0.001512	0	0
DQX1	165545	broad.mit.edu	37	2	74746699	74746699	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:74746699G>A	uc010yrw.1	-	10	1955	c.1790C>T	c.(1789-1791)TCA>TTA	p.S597L	DQX1_uc002smc.2_Missense_Mutation_p.S158L	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	597						nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						AAAGTATCCTGACACCAGTGC	0.473													49	72					0	0	0.000781405	0	0
REG1A	5967	broad.mit.edu	37	2	79349995	79349995	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:79349995C>T	uc002snz.2	+	5	453	c.350C>T	c.(349-351)TCC>TTC	p.S117F	REG1A_uc010ysd.1_Missense_Mutation_p.S117F	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	117	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						AGCAGTGGGTCCCTGGTCTCC	0.567													20	31					0	0	0.00047179	0	0
IMMT	10989	broad.mit.edu	37	2	86371633	86371633	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:86371633C>T	uc002sqz.3	-	15	2423	c.2035G>A	c.(2035-2037)GAG>AAG	p.E679K	IMMT_uc002sqy.3_Missense_Mutation_p.E420K|IMMT_uc002srb.3_Missense_Mutation_p.E668K|IMMT_uc002sra.3_Missense_Mutation_p.E678K|IMMT_uc010ytd.1_Missense_Mutation_p.E667K|IMMT_uc010yte.1_Missense_Mutation_p.E632K	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	679	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						GGGCAGAGCTCTGGGGGCGGC	0.453													28	36					0	0	0.001512	0	0
CD8B	926	broad.mit.edu	37	2	87085475	87085475	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:87085475C>T	uc002srz.2	-	2	158	c.108G>A	c.(106-108)ATG>ATA	p.M36I	RMND5A_uc002srs.3_Intron|CD8B_uc002srw.2_Missense_Mutation_p.M36I|CD8B_uc002srx.2_Missense_Mutation_p.M36I|CD8B_uc002sry.2_Missense_Mutation_p.M36I|CD8B_uc010fgt.2_Missense_Mutation_p.M36I|CD8B_uc002ssa.2_Missense_Mutation_p.M36I|CD8B_uc010yto.1_Missense_Mutation_p.M36I	NM_004931	NP_004922	P10966	CD8B_HUMAN	CD8b antigen isoform 5 precursor	36	Ig-like V-type.|Extracellular (Potential).				immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						ACAGCATCACCATCTTGTTGG	0.512													29	42					0	0	0.000692331	0	0
SMYD1	150572	broad.mit.edu	37	2	88402614	88402614	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:88402614C>T	uc002ssr.2	+	7	928	c.926C>T	c.(925-927)TCC>TTC	p.S309F	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.S5F	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	309					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ATACAATTCTCCAAGGATACA	0.458													30	41					0	0	0.00058488	0	0
Unknown	0	broad.mit.edu	37	2	90077822	90077822	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:90077822C>T	uc010fhm.2	+	13		c.1399C>T								Parts of antibodies, mostly variable regions.																		ACTCTGGCTCCCAGGTGAGGG	0.517													25	55					0	0	0.00178596	0	0
Unknown	0	broad.mit.edu	37	2	90249246	90249246	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:90249246C>T	uc010fhm.2	+	28		c.3789C>T								Parts of antibodies, mostly variable regions.																		AGCCCCTAAGCTCTTCATCTA	0.502													47	61					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	2	90458637	90458637	+	RNA	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:90458637A>G	uc010fhm.2	+	31		c.4256A>G								Parts of antibodies, mostly variable regions.																		AGATTTTGCAACTTATTACTG	0.512													8	479					0	0	0.00121646	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95494943	95494943	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:95494943C>T	uc010fhp.2	-	8		c.797G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TGCAGGAGGCCCTACAAAGCA	0.353													36	50					0	0	0.00170553	0	0
SEMA4C	54910	broad.mit.edu	37	2	97526640	97526640	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:97526640G>A	uc002sxh.3	-	15	2385	c.2225C>T	c.(2224-2226)TCC>TTC	p.S742F	ANKRD39_uc002sxd.3_5'Flank|SEMA4C_uc002sxf.3_Missense_Mutation_p.S242F|SEMA4C_uc002sxe.2_Missense_Mutation_p.S283F|SEMA4C_uc002sxg.3_Missense_Mutation_p.S795F	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	742	Pro-rich.|Cytoplasmic (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						TATCTTAAGGGAGCCATCTGA	0.627													29	25					0	0	0.00209593	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040432	103040432	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:103040432G>A	uc002tbx.2	+	4	716	c.232G>A	c.(232-234)GAC>AAC	p.D78N	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	78	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GGGTAGTAACGACCTATCTGA	0.438													8	9					0	0	0.000274275	0	0
RGPD3	653489	broad.mit.edu	37	2	107040789	107040789	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:107040789C>T	uc010ywi.1	-	20	3691	c.3634G>A	c.(3634-3636)GAT>AAT	p.D1212N		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1212					intracellular transport		binding			ovary(1)	1						TTTGTTTGATCATTTGTCAAA	0.428													84	105					0	0	0.000781405	0	0
RGPD4	285190	broad.mit.edu	37	2	108487596	108487596	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:108487596G>A	uc010ywk.1	+	20	3218	c.3136G>A	c.(3136-3138)GAA>AAA	p.E1046K	RGPD4_uc002tdu.2_Missense_Mutation_p.E233K|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1046	RanBD1 1.				intracellular transport		binding			skin(2)	2						TCAAATGCCTGAAAAAGTAGA	0.388													110	159					0	0	0.000781405	0	0
RANBP2	5903	broad.mit.edu	37	2	109370326	109370326	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:109370326C>T	uc002tem.3	+	15	2227	c.2101C>T	c.(2101-2103)CCT>TCT	p.P701S		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	701					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TGCCCTTTCTCCTGAAGAACA	0.313													78	122					0	0	0.000781405	0	0
EDAR	10913	broad.mit.edu	37	2	109547439	109547439	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:109547439G>A	uc002teq.3	-	2	463	c.32C>T	c.(31-33)CCC>CTC	p.P11L	EDAR_uc010fjn.2_Missense_Mutation_p.P11L|EDAR_uc010yws.1_Missense_Mutation_p.P11L	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	11					apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GGGGAGCCAGGGCGTCTGCGT	0.552													21	47					0	0	0.00152264	0	0
IL1A	3552	broad.mit.edu	37	2	113535611	113535611	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:113535611G>A	uc002tig.2	-	6	1528	c.568C>T	c.(568-570)CAA>TAA	p.Q190*		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	190					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						ACATACAATTGAGTTTTTGAG	0.378													19	31					0	0	0.00121646	0	0
PAX8	7849	broad.mit.edu	37	2	113984806	113984806	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:113984806G>A	uc010yxt.1	-	10	1281	c.1115C>T	c.(1114-1116)CCC>CTC	p.P372L	PAX8_uc010yxu.1_Missense_Mutation_p.P346S|PAX8_uc010yxv.1_Missense_Mutation_p.P309L|PAX8_uc002tjm.2_Missense_Mutation_p.P269S|PAX8_uc002tjn.2_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	372					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TGGGTATCCGGGCAGCGTGGG	0.617			T	PPARG	follicular thyroid		Thyroid dysgenesis 						7	7					0	0	0.000157383	0	0
EN1	2019	broad.mit.edu	37	2	119604387	119604387	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:119604387C>T	uc002tlm.2	-	1	1373	c.357G>A	c.(355-357)AAG>AAA	p.K119K		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	119					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						GCGGCTGCTCCTTTTTGCAGC	0.677													24	46					0	0	0.000720815	0	0
SCTR	6344	broad.mit.edu	37	2	120221773	120221773	+	Missense_Mutation	SNP	G	A	A	rs142033327		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:120221773G>A	uc002tma.2	-	6	788	c.562C>T	c.(562-564)CGT>TGT	p.R188C	SCTR_uc002tlz.2_Missense_Mutation_p.R10C	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	188	Helical; Name=2; (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	GACAGGGCACGAAGGATGAAG	0.557													26	28					0	0	0.000586117	0	0
SCTR	6344	broad.mit.edu	37	2	120223413	120223413	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:120223413G>A	uc002tma.2	-	5	681	c.455C>T	c.(454-456)TCC>TTC	p.S152F	SCTR_uc002tlz.2_Intron	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	152	Helical; Name=1; (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	GACCAGGGAGGAGCTGTAGCC	0.612													18	42					0	0	0.00074312	0	0
PTPN4	5775	broad.mit.edu	37	2	120720203	120720203	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:120720203C>T	uc002tmf.1	+	24	3063	c.2292C>T	c.(2290-2292)CAC>CAT	p.H764H	PTPN4_uc010flj.1_Silent_p.H477H|PTPN4_uc010yyr.1_Silent_p.H397H	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	764	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	TTAAATGTCACCAATATTGGC	0.299													11	14					0	0	0.000673444	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125282009	125282009	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:125282009G>A	uc002tno.2	+	9	1818	c.1454G>A	c.(1453-1455)GGA>GAA	p.G485E	CNTNAP5_uc010flu.2_Missense_Mutation_p.G486E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	485	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		ATTTATTCTGGAAATAGCTAC	0.453													4	4					0	0	0.00024832	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125367393	125367393	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:125367393C>T	uc002tno.2	+	12	2133	c.1769C>T	c.(1768-1770)TCC>TTC	p.S590F	CNTNAP5_uc010flu.2_Missense_Mutation_p.S591F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	590	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TACGAGCAATCCTGCGAGGTG	0.507													21	21					0	0	0.00047179	0	0
CYP27C1	339761	broad.mit.edu	37	2	127950676	127950676	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:127950676C>T	uc002tod.2	-	7	1127	c.996G>A	c.(994-996)GTG>GTA	p.V332V		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	332						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		CTACCTGGATCACGACGAGGT	0.512													17	19					0	0	0.000958276	0	0
WDR33	55339	broad.mit.edu	37	2	128474766	128474766	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:128474766G>A	uc002tpg.1	-	17	3015	c.2832C>T	c.(2830-2832)CCC>CCT	p.P944P		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	944					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		GGTTCAGAGGGGGAATGCGAC	0.488													9	13					0	0	0.000673444	0	0
HS6ST1	9394	broad.mit.edu	37	2	129026412	129026412	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:129026412G>A	uc002tpt.3	-	2	594	c.560C>T	c.(559-561)CCC>CTC	p.P187L		NM_004807	NP_004798	O60243	H6ST1_HUMAN	heparan sulfate 6-O-sulfotransferase 1	187	Lumenal (Potential).|3'-phosphate binding (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	integral to plasma membrane	sulfotransferase activity			pancreas(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.117)		GCGGGACACGGGGTCTCGTAG	0.632													19	23					0	0	0.00121646	0	0
SMPD4	55627	broad.mit.edu	37	2	130930247	130930247	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:130930247G>A	uc002tqq.1	-	7	1095	c.575C>T	c.(574-576)CCG>CTG	p.P192L	SMPD4_uc002tqp.1_5'UTR|SMPD4_uc010yzy.1_Intron|SMPD4_uc010yzz.1_Intron|SMPD4_uc002tqr.1_Missense_Mutation_p.P192L|SMPD4_uc002tqs.1_Missense_Mutation_p.P60L|SMPD4_uc002tqt.1_Missense_Mutation_p.P70L|SMPD4_uc010zaa.1_Missense_Mutation_p.P79L|SMPD4_uc010zab.1_Missense_Mutation_p.P119L|SMPD4_uc010zac.1_Intron|SMPD4_uc010zad.1_Intron	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	153					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	atactcGAACGGATCTGAGAG	0.473													29	56					0	0	0.00209593	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131797938	131797938	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:131797938C>T	uc002tsa.1	+	8	1549	c.1029C>T	c.(1027-1029)TTC>TTT	p.F343F	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Silent_p.F343F|ARHGEF4_uc010fmx.1_Intron|ARHGEF4_uc002tsc.1_5'UTR	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	343	DH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		AGAAGGCCTTCGTGAAGGCCC	0.657													7	5					0	0	0.000157383	0	0
LCT	3938	broad.mit.edu	37	2	136566649	136566649	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:136566649G>A	uc002tuu.1	-	8	3279	c.3268C>T	c.(3268-3270)CCA>TCA	p.P1090S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1090	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		ATCCTATATGGTGCCCAGCCT	0.532													20	24					0	0	0.00152264	0	0
MCM6	4175	broad.mit.edu	37	2	136614338	136614338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:136614338C>T	uc002tuw.2	-	11	1662	c.1586G>A	c.(1585-1587)CGA>CAA	p.R529Q		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	529	Arginine finger.|MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	GAGATCGAATCGGGACATGAT	0.423													28	35					0	0	0.000878237	0	0
LRP1B	53353	broad.mit.edu	37	2	141777598	141777598	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:141777598C>T	uc002tvj.1	-	12	2835	c.1863G>A	c.(1861-1863)AGG>AGA	p.R621R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	621	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAATGGTTTTCCTATGGCCAT	0.418										TSP Lung(27;0.18)			10	13					0	0	0.000673444	0	0
KYNU	8942	broad.mit.edu	37	2	143743579	143743579	+	Silent	SNP	G	A	A	rs140758594		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:143743579G>A	uc002tvl.2	+	10	1021	c.891G>A	c.(889-891)ACG>ACA	p.T297T	KYNU_uc002tvk.2_Silent_p.T297T|KYNU_uc010fnm.2_Silent_p.T297T	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	297					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	ATGCCCATACGATTAAACCTG	0.328													7	3					0	0	0.000157383	0	0
MBD5	55777	broad.mit.edu	37	2	149243361	149243361	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:149243361C>T	uc002twm.3	+	11	3884	c.2896C>T	c.(2896-2898)CTA>TTA	p.L966L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.L966L|MBD5_uc002two.2_Silent_p.L224L|MBD5_uc002twp.2_Silent_p.L16L	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	966						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ACTGACTCATCTACAGTCGCT	0.383													7	11					0	0	0.00198382	0	0
NEB	4703	broad.mit.edu	37	2	152470873	152470873	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:152470873T>C	uc010fnx.2	-	73	10980	c.10789A>G	c.(10789-10791)AAG>GAG	p.K3597E		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3597	Nebulin 98.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGGGGATGCTTGTAGTCTATG	0.522													25	27					0	0	0.00047179	0	0
LY75	4065	broad.mit.edu	37	2	160732021	160732021	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:160732021G>A	uc002ubc.3	-	12	1977	c.1908C>T	c.(1906-1908)TCC>TCT	p.S636S	LY75_uc002ubb.3_Silent_p.S636S|LY75_uc010fos.2_Silent_p.S636S|LY75_uc010fot.1_Silent_p.S636S	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	636	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CAGGCTTAGGGGATGCTTCTT	0.463													20	37					0	0	0.00278032	0	0
PLA2R1	22925	broad.mit.edu	37	2	160869882	160869882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:160869882C>T	uc002ube.1	-	10	1763	c.1556G>A	c.(1555-1557)TGG>TAG	p.W519*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.W519*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.W519*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	519	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ATGTCTCTCCCATCCCTTAAA	0.373													15	28					0	0	0.00244969	0	0
COBLL1	22837	broad.mit.edu	37	2	165578631	165578631	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:165578631G>A	uc010zcw.1	-	9	1272	c.1148C>T	c.(1147-1149)CCT>CTT	p.P383L	COBLL1_uc002ucp.2_Missense_Mutation_p.P317L|COBLL1_uc002ucq.2_Missense_Mutation_p.P317L|COBLL1_uc010zcx.1_Missense_Mutation_p.P363L|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Missense_Mutation_p.P86L	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	355										ovary(2)|pancreas(1)	3						ACAAGAAGCAGGCCTCTCCTG	0.502													9	16					0	0	0.000442599	0	0
B3GALT1	8708	broad.mit.edu	37	2	168725993	168725993	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:168725993C>T	uc002udz.1	+	2	795	c.444C>T	c.(442-444)TCC>TCT	p.S148S		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	148	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						TTATTGACTCCTACCATAACC	0.433													18	29					0	0	0.00121646	0	0
FASTKD1	79675	broad.mit.edu	37	2	170428488	170428488	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:170428488G>A	uc002uev.3	-	2	440	c.52C>T	c.(52-54)CTA>TTA	p.L18L	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Silent_p.L4L|FASTKD1_uc002uey.2_Silent_p.L4L	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	18					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						ATAGCTCTTAGACGAAGCATA	0.363													30	36					0	0	0.0024448	0	0
ATF2	1386	broad.mit.edu	37	2	175976345	175976345	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:175976345C>T	uc002ujl.2	-	10	1041	c.779G>A	c.(778-780)GGA>GAA	p.G260E	ATF2_uc010fqv.2_Missense_Mutation_p.G211E|ATF2_uc002ujv.2_Missense_Mutation_p.G7E|ATF2_uc002ujm.2_Missense_Mutation_p.G202E|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.G260E|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.G242E|ATF2_uc002ujs.2_Missense_Mutation_p.G202E|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Missense_Mutation_p.G202E|ATF2_uc002ujx.1_RNA	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	260					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			ACCTGGGATTCCTGGAACACT	0.393													45	74					0	0	0.000781405	0	0
EVX2	344191	broad.mit.edu	37	2	176948122	176948122	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:176948122G>A	uc010zeu.1	-	1	569	c.383C>T	c.(382-384)CCC>CTC	p.P128L		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	128						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GAGGCCCCCGGGGGAGCGAAG	0.687													6	13					0	0	0.00198382	0	0
PDE11A	50940	broad.mit.edu	37	2	178534251	178534251	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:178534251C>T	uc002ulq.2	-	18	2850	c.2532G>A	c.(2530-2532)CGG>CGA	p.R844R	PDE11A_uc010zfd.1_Silent_p.R35R|PDE11A_uc002ulp.2_Silent_p.R400R|PDE11A_uc002ulr.2_Silent_p.R594R|PDE11A_uc002uls.1_Silent_p.R486R|PDE11A_uc002ult.1_Silent_p.R594R|PDE11A_uc002ulu.1_Silent_p.R486R	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	844	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CTAATCTCTCCCGATCTCCTT	0.353									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				29	68					0	0	0.0024448	0	0
TTN	7273	broad.mit.edu	37	2	179426124	179426124	+	Silent	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179426124T>C	uc010zfg.1	-	275	77255	c.77031A>G	c.(77029-77031)GAA>GAG	p.E25677E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.E19372E|TTN_uc010zfi.1_Silent_p.E19305E|TTN_uc010zfj.1_Silent_p.E19180E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26604							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGGACTGGTTCACAAGATT	0.403													20	33					0	0	0.00278032	0	0
TTN	7273	broad.mit.edu	37	2	179428394	179428394	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179428394T>C	uc010zfg.1	-	275	74985	c.74761A>G	c.(74761-74763)ACA>GCA	p.T24921A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T18616A|TTN_uc010zfi.1_Missense_Mutation_p.T18549A|TTN_uc010zfj.1_Missense_Mutation_p.T18424A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25848							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGTGCCCATGTTACTACCATA	0.483													17	16					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179526509	179526509	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179526509T>C	uc010zfk.1	-	23	2086	c.1538A>G	c.(1537-1539)AAG>AGG	p.K513R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTCAGGCTTTTTAGGAGG	0.373													11	19					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179537416	179537416	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179537416G>A	uc010zfg.1	-	148	31122	c.30898C>T	c.(30898-30900)CCT>TCT	p.P10300S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6961S|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11227							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTCCTCAGGAATTTTCTTT	0.373													3	2					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179542873	179542873	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179542873C>T	uc010zfg.1	-	142	30465	c.30241G>A	c.(30241-30243)GTG>ATG	p.V10081M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V6742M|TTN_uc010fre.1_Missense_Mutation_p.V738M|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11008							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGCTTCCACTTTTTTCGGA	0.363													25	39					0	0	0.00106085	0	0
TTN	7273	broad.mit.edu	37	2	179558353	179558353	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179558353A>G	uc010zfg.1	-	116	28069	c.27845T>C	c.(27844-27846)GTT>GCT	p.V9282A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V5943A|TTN_uc010fre.1_Missense_Mutation_p.V393A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10209							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGGTTCAACCCTTTTGGA	0.284													12	8					0	0	0.000308642	0	0
TTN	7273	broad.mit.edu	37	2	179588002	179588002	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179588002C>T	uc010zfg.1	-	72	18224	c.18000G>A	c.(17998-18000)GGG>GGA	p.G6000G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2661G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6927							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATGGACTTCCCTGGTTCTA	0.378													6	9					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179591859	179591859	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179591859G>A	uc010zfg.1	-	66	16725	c.16501C>T	c.(16501-16503)CCC>TCC	p.P5501S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P2162S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6428							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCCAGCGGGATTCTGAGCC	0.428													9	11					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179592048	179592048	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179592048C>T	uc010zfg.1	-	66	16536	c.16312G>A	c.(16312-16314)GGT>AGT	p.G5438S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2099S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6365							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGAGTCACCTGCTTTCACA	0.403													5	1					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179638821	179638821	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:179638821G>A	uc010zfg.1	-	31	7298	c.7074C>T	c.(7072-7074)ATC>ATT	p.I2358I	TTN_uc010zfh.1_Silent_p.I2312I|TTN_uc010zfi.1_Silent_p.I2312I|TTN_uc010zfj.1_Silent_p.I2312I|TTN_uc002unb.2_Silent_p.I2358I|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2358							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCCTTGTAGGATAGCAATGG	0.423													12	33					0	0	0.000308642	0	0
ITGA4	3676	broad.mit.edu	37	2	182359477	182359477	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:182359477C>T	uc002unu.2	+	12	2040	c.1277C>T	c.(1276-1278)TCG>TTG	p.S426L		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	426	FG-GAP 7.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ATCAGCAAATCGTTAAGTATG	0.308													25	33					0	0	0.00127121	0	0
SSFA2	6744	broad.mit.edu	37	2	182765502	182765502	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:182765502G>A	uc002uoi.2	+	7	905	c.583G>A	c.(583-585)GAT>AAT	p.D195N	SSFA2_uc002uoh.2_Missense_Mutation_p.D195N|SSFA2_uc002uoj.2_Missense_Mutation_p.D195N|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.D42N|SSFA2_uc002uol.2_Missense_Mutation_p.D42N	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	195						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TGATGAACCAGATATTGCTTC	0.343													20	40					0	0	0.00121646	0	0
SSFA2	6744	broad.mit.edu	37	2	182780654	182780654	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:182780654G>A	uc002uoi.2	+	11	2609	c.2287G>A	c.(2287-2289)GAG>AAG	p.E763K	SSFA2_uc002uoh.2_Missense_Mutation_p.E763K|SSFA2_uc002uoj.2_Missense_Mutation_p.E763K|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.E610K|SSFA2_uc002uol.2_Missense_Mutation_p.E610K|SSFA2_uc002uom.2_Missense_Mutation_p.E231K	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	763						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TCCAGGAAAAGAGACCAGATG	0.468													23	37					0	0	0.00047179	0	0
PDE1A	5136	broad.mit.edu	37	2	183104895	183104895	+	Missense_Mutation	SNP	C	T	T	rs145482728		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:183104895C>T	uc002uos.2	-	4	424	c.340G>A	c.(340-342)GAA>AAA	p.E114K	PDE1A_uc010zfp.1_Missense_Mutation_p.E10K|PDE1A_uc002uoq.1_Missense_Mutation_p.E114K|PDE1A_uc010zfq.1_Missense_Mutation_p.E114K|PDE1A_uc002uor.2_Missense_Mutation_p.E98K|PDE1A_uc002uou.2_Missense_Mutation_p.E80K	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	114					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.E114K(1)		skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTTGGTTTTTCCTCAGGTTTC	0.418													45	57					0	0	0.000781405	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187702055	187702055	+	Missense_Mutation	SNP	G	A	A	rs149540467	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:187702055G>A	uc002upu.1	-	5	761	c.721C>T	c.(721-723)CCA>TCA	p.P241S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	241	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CCCTCAATTGGAAACTGTTTG	0.358													8	11					0	0	0.000442599	0	0
SDPR	8436	broad.mit.edu	37	2	192701073	192701073	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:192701073C>T	uc002utb.2	-	2	1184	c.854G>A	c.(853-855)GGA>GAA	p.G285E		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	285						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GGAGCTTTTTCCTGAGGATAT	0.458													73	83					0	0	0.000781405	0	0
DNAH7	56171	broad.mit.edu	37	2	196689005	196689005	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:196689005G>A	uc002utj.3	-	49	9366	c.9265C>T	c.(9265-9267)CAT>TAT	p.H3089Y		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3089	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GGAAGATAATGAGGATTTCTT	0.368													20	38					0	0	0.00188189	0	0
DNAH7	56171	broad.mit.edu	37	2	196771428	196771428	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:196771428C>T	uc002utj.3	-	27	4391	c.4290G>A	c.(4288-4290)ATG>ATA	p.M1430I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1430	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACCCAGGGTTCATTGTTATAA	0.368													16	23					0	0	0.00074312	0	0
SF3B1	23451	broad.mit.edu	37	2	198265465	198265465	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:198265465A>G	uc002uue.2	-	18	2740	c.2692T>C	c.(2692-2694)TAT>CAT	p.Y898H		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	898					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGGAAAGCATAAAGAATACCA	0.323													15	49					0	0	0.000422831	0	0
WDR12	55759	broad.mit.edu	37	2	203764315	203764316	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:203764315_203764316GG>TT	uc002uzl.2	-	4	1026_1027	c.276_277CC>AA	c.(274-279)CCCCAG>CCAAAG	p.Q93K	WDR12_uc010ftt.2_Missense_Mutation_p.Q93K	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	93					cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TGCTCTGGCTGGGGTGCAGTAT	0.396													14	560					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204066370	204066371	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:204066370_204066371GG>TT	uc002uzt.3	+	49	7589_7590	c.7256_7257GG>TT	c.(7255-7257)TGG>TTT	p.W2419F	NBEAL1_uc002uzs.3_Missense_Mutation_p.W1060F	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2419							binding			ovary(1)|skin(1)	2						GCTGGATACTGGGATAATAGCA	0.396													15	574					0	0	6.4e-05	0	0
DYTN	391475	broad.mit.edu	37	2	207564565	207564565	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:207564565G>A	uc002vbr.1	-	7	722	c.605C>T	c.(604-606)TCT>TTT	p.S202F		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	202						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		GGGAGGCTCAGATTGGACCCA	0.502													12	16					0	0	0.00136819	0	0
C2orf67	151050	broad.mit.edu	37	2	210968836	210968836	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:210968836C>T	uc002vds.2	-	4	1628	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	C2orf67_uc002vdt.2_Missense_Mutation_p.E474K|C2orf67_uc002vdw.2_Missense_Mutation_p.E474K|C2orf67_uc002vdv.2_Missense_Mutation_p.E474K|C2orf67_uc002vdx.1_Missense_Mutation_p.E474K	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	474										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		ACCTGTTTTTCGATGTTTCGA	0.368													18	28					0	0	0.00152264	0	0
ACADL	33	broad.mit.edu	37	2	211069406	211069406	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:211069406C>T	uc002vdz.3	-	7	997	c.769G>A	c.(769-771)GAT>AAT	p.D257N		NM_001608	NP_001599	P28330	ACADL_HUMAN	long-chain acyl-CoA dehydrogenase precursor	257					carnitine catabolic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial matrix	long-chain-acyl-CoA dehydrogenase activity|palmitoyl-CoA oxidase activity				0		Renal(323;0.202)		Epithelial(149;0.00631)|Lung(261;0.0438)|LUSC - Lung squamous cell carcinoma(261;0.0466)|all cancers(144;0.0621)		TCTGCGGTATCCTAAGAGACC	0.264													12	11					0	0	0.00136819	0	0
LANCL1	10314	broad.mit.edu	37	2	211302519	211302519	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:211302519G>A	uc010zjh.1	-	7	843	c.768C>T	c.(766-768)TTC>TTT	p.F256F	LANCL1_uc002ved.2_Silent_p.F256F|LANCL1_uc010fuq.2_Silent_p.F256F	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	256						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		TGCCAGAAGGGAATTTCAGCT	0.478													19	18					0	0	0.000958276	0	0
ERBB4	2066	broad.mit.edu	37	2	212652880	212652880	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:212652880G>A	uc002veg.1	-	4	524	c.426C>T	c.(424-426)ATC>ATT	p.I142I	ERBB4_uc002veh.1_Silent_p.I142I|ERBB4_uc010zji.1_Silent_p.I142I|ERBB4_uc010zjj.1_Silent_p.I142I|ERBB4_uc010fut.1_Silent_p.I142I	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	142	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CACCATTTAGGATTTCTGTAT	0.333										TSP Lung(8;0.080)			9	12					0	0	0.000442599	0	0
XRCC5	7520	broad.mit.edu	37	2	217001835	217001835	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:217001835C>T	uc002vfy.2	+	11	1278	c.1138C>T	c.(1138-1140)CTG>TTG	p.L380L	XRCC5_uc002vfz.2_Silent_p.L266L	NM_021141	NP_066964	P13010	XRCC5_HUMAN	ATP-dependent DNA helicase II	380	Ku.				double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|provirus integration|telomere maintenance|transcription, DNA-dependent	Ku70:Ku80 complex|nonhomologous end joining complex|nuclear telomere cap complex|nucleoplasm	ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|telomeric DNA binding|transcription regulatory region DNA binding			lung(1)|kidney(1)	2		Renal(323;0.0328)		Epithelial(149;9.78e-06)|all cancers(144;0.000632)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.0117)		ACTTTCCTCCCTGATTCATGC	0.408								Direct_reversal_of_damage|NHEJ					29	57					0	0	0.00178596	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217281010	217281010	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:217281010T>C	uc002vgc.3	+	4	1172	c.842T>C	c.(841-843)ATG>ACG	p.M281T	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.M281T|SMARCAL1_uc010fvg.2_Missense_Mutation_p.M281T	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	281	HARP 1.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		AACTTCAGCATGAATGACTAT	0.433									Schimke_Immuno-Osseous_Dysplasia				42	55					0	0	0.000781405	0	0
SPEG	10290	broad.mit.edu	37	2	220356855	220356855	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:220356855T>A	uc010fwg.2	+	40	9484	c.9484T>A	c.(9484-9486)TAT>AAT	p.Y3162N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3162	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTCCCCGTTCTATGAGCCAGA	0.577													13	24					0	0	0.00136819	0	0
COL4A4	1286	broad.mit.edu	37	2	227942694	227942694	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:227942694G>A	uc010zlt.1	-	25	2557	c.1903C>T	c.(1903-1905)CCT>TCT	p.P635S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	635	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGTGGACCAGGAAATCCCAGT	0.587													20	21					0	0	0.00121646	0	0
SPHKAP	80309	broad.mit.edu	37	2	228860340	228860340	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:228860340G>A	uc002vpq.2	-	8	4566	c.4519C>T	c.(4519-4521)CCC>TCC	p.P1507S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P1507S|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1507						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGAGGGTTGGGGGCCTCATCG	0.552													10	22					0	0	0.000442599	0	0
SP110	3431	broad.mit.edu	37	2	231077610	231077610	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:231077610G>A	uc002vqh.3	-	4	689	c.449C>T	c.(448-450)TCA>TTA	p.S150L	SP110_uc002vqg.3_Missense_Mutation_p.S150L|SP110_uc002vqi.3_Missense_Mutation_p.S150L|SP110_uc010fxk.2_Missense_Mutation_p.S150L	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	150					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CGCACAGGGTGAACAGCTTGG	0.597													45	60					0	0	0.000781405	0	0
NGEF	25791	broad.mit.edu	37	2	233748746	233748746	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:233748746C>T	uc002vts.2	-	11	1794	c.1546G>A	c.(1546-1548)GAA>AAA	p.E516K	NGEF_uc010zmm.1_Missense_Mutation_p.E239K|NGEF_uc010fyg.1_Missense_Mutation_p.E424K	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	516	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		AGGTAAATTTCGTGGAAGAGC	0.612													11	17					0	0	0.00185496	0	0
MSL3L2	151507	broad.mit.edu	37	2	234775390	234775390	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:234775390G>A	uc010znf.1	-	2	690	c.452C>T	c.(451-453)CCA>CTA	p.P151L		NR_024322				SubName: Full=cDNA FLJ52683, highly similar to Male-specific lethal 3-like 1; SubName: Full=cDNA, FLJ79271, highly similar to Male-specific lethal 3-like 1; SubName: Full=HCG1642047;												0						CGGCCTGGATGGATTCAACAA	0.522													8	7					0	0	0.000157383	0	0
SPP2	6694	broad.mit.edu	37	2	234969029	234969029	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:234969029G>A	uc002vvk.1	+	4	435	c.350G>A	c.(349-351)AGA>AAA	p.R117K	SPP2_uc010fyl.1_Missense_Mutation_p.R37K	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	117					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GCTGTTTGCAGAAGCACCGTG	0.512													25	30					0	0	0.000720815	0	0
HDLBP	3069	broad.mit.edu	37	2	242173340	242173341	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:242173340_242173341GG>TT	uc002waz.2	-	24	3410_3411	c.3182_3183CC>AA	c.(3181-3183)CCC>CAA	p.P1061Q	HDLBP_uc002wba.2_Missense_Mutation_p.P1061Q|HDLBP_uc002wbb.2_Missense_Mutation_p.P1013Q	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	1061	KH 13.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		GATGGTATTTGGGGTCTACAGT	0.465													7	135					0	0	6.4e-05	0	0
HDLBP	3069	broad.mit.edu	37	2	242206277	242206277	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:242206277G>A	uc002waz.2	-	3	236	c.8C>T	c.(7-9)TCC>TTC	p.S3F	HDLBP_uc002wba.2_Missense_Mutation_p.S3F|HDLBP_uc002wbb.2_Missense_Mutation_p.S24F|HDLBP_uc010fzn.1_5'UTR	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	3					cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		AACTGCAACGGAACTCATGGT	0.433													56	97					0	0	0.000781405	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551666	1551666	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:1551666C>T	uc010gai.2	-	4	968	c.869G>A	c.(868-870)GGA>GAA	p.G290E	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	290	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GGACACATTTCCATTCTCCAA	0.552													14	30					0	0	0.00244969	0	0
CHGB	1114	broad.mit.edu	37	20	5897513	5897513	+	Silent	SNP	G	A	A	rs141825852		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:5897513G>A	uc002wmg.2	+	3	444	c.138G>A	c.(136-138)TCG>TCA	p.S46S	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	46						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						ATGCCTTGTCGAAGTCCAGCG	0.557													24	36					0	0	0.000720815	0	0
HAO1	54363	broad.mit.edu	37	20	7866213	7866213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:7866213G>A	uc002wmw.1	-	7	1021	c.997C>T	c.(997-999)CTC>TTC	p.L333F	HAO1_uc010gbu.2_Missense_Mutation_p.L333F	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	333	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						AGTATCTCGAGGACATCTTGA	0.373													5	7					0	0	0.000157383	0	0
PLCB4	5332	broad.mit.edu	37	20	9404511	9404511	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:9404511C>T	uc002wnf.2	+	26	2536	c.2400C>T	c.(2398-2400)TCC>TCT	p.S800S	PLCB4_uc010gbw.1_Silent_p.S800S|PLCB4_uc010gbx.2_Silent_p.S812S|PLCB4_uc002wne.2_Silent_p.S800S|PLCB4_uc002wnh.2_Silent_p.S647S	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	800					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GACACATTTCCCTTCGAAATG	0.413													11	7					0	0	0.000673444	0	0
C20orf103	24141	broad.mit.edu	37	20	9496978	9496978	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:9496978G>A	uc002wni.1	+	4	674	c.445G>A	c.(445-447)GAG>AAG	p.E149K	C20orf103_uc010zrc.1_Missense_Mutation_p.E105K	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	149	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CGACTCCTCGGAGAAAACCCA	0.577													29	43					0	0	0.00127121	0	0
PAK7	57144	broad.mit.edu	37	20	9561479	9561479	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:9561479C>T	uc002wnl.2	-	5	848	c.303G>A	c.(301-303)AGG>AGA	p.R101R	PAK7_uc002wnk.2_Silent_p.R101R|PAK7_uc002wnj.2_Silent_p.R101R|PAK7_uc010gby.1_Silent_p.R101R	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	101	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGCTTTCTTTCCTTAGGGAGT	0.532													33	51					0	0	0.00178596	0	0
DEFB118	117285	broad.mit.edu	37	20	29960908	29960908	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:29960908G>C	uc002wvr.2	+	2	333	c.307G>C	c.(307-309)GTT>CTT	p.V103L		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	103					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			GAAAGATATGGTTGAAGAGTC	0.458													23	39					0	0	0.000586117	0	0
BPIL1	80341	broad.mit.edu	37	20	31607446	31607447	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:31607446_31607447CC>TT	uc002wyj.2	+	11	1164_1165	c.970_971CC>TT	c.(970-972)CCT>TTT	p.P324F		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	324						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GGGTGCCACACCTGTGGCCATG	0.673													14	18					0	0	6.4e-05	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31982865	31982865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:31982865G>A	uc010gek.2	-	3	486	c.362C>T	c.(361-363)TCC>TTC	p.S121F	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.S31F|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.S121F|CDK5RAP1_uc002wza.2_Missense_Mutation_p.S121F|CDK5RAP1_uc010gel.2_Missense_Mutation_p.S30F|CDK5RAP1_uc010gem.2_Missense_Mutation_p.S121F|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.S121F|CDK5RAP1_uc010gen.2_Missense_Mutation_p.S121F	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	121	MTTase N-terminal.|CDK5 activation inhibition.				brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						CTGTAAGATGGACCAGGCTAT	0.493													54	79					0	0	0.000781405	0	0
MYH7B	57644	broad.mit.edu	37	20	33578806	33578807	+	Splice_Site	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:33578806_33578807GG>AA	uc002xbi.1	+	22	2284	c.2192_splice	c.e22-1	p.G731_splice		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,							membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CTCACGTCCAGGGGTCATGGAT	0.604													16	29					0	0	6.4e-05	0	0
RBM12	10137	broad.mit.edu	37	20	34240927	34240927	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:34240927C>T	uc002xdq.2	-	3	2550	c.2318G>A	c.(2317-2319)GGA>GAA	p.G773E	CPNE1_uc010zvj.1_Intron|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.G773E|RBM12_uc002xds.2_Missense_Mutation_p.G773E	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	773	Gly-rich.|Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			TGGTCCACCTCCAAAACCCGG	0.557													33	55					0	0	0.000692331	0	0
RBM12	10137	broad.mit.edu	37	20	34243230	34243230	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:34243230G>A	uc002xdq.2	-	3	247	c.15C>T	c.(13-15)ATC>ATT	p.I5I	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_5'UTR|CPNE1_uc002xdf.2_5'UTR|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_5'UTR|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_5'UTR|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_RNA|CPNE1_uc002xdo.1_RNA|CPNE1_uc002xdp.1_RNA|RBM12_uc002xdr.2_Silent_p.I5I|RBM12_uc002xds.2_Silent_p.I5I	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	5						nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CTTGCAAACGGATGACCACAG	0.527											OREG0004046	type=REGULATORY REGION|Gene=RBM12|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	15	18					0	0	0.00121646	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060169	35060169	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:35060169G>A	uc002xff.2	+	3	484	c.49G>A	c.(49-51)GAC>AAC	p.D17N	DLGAP4_uc010zvp.1_Missense_Mutation_p.D17N	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	17					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CGACAGCCTAGACCCACCCCA	0.721													9	13					0	0	0.000673444	0	0
C20orf117	140710	broad.mit.edu	37	20	35444327	35444327	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:35444327C>T	uc002xgd.1	-	5	1131	c.804G>A	c.(802-804)GGG>GGA	p.G268G	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	268											0		Myeloproliferative disorder(115;0.00874)				CCAAGCTCTCCCCGCACTCTC	0.667													7	7					0	0	0.00198382	0	0
PTPRT	11122	broad.mit.edu	37	20	40727169	40727169	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:40727169G>A	uc002xkg.2	-	27	3922	c.3738C>T	c.(3736-3738)TTC>TTT	p.F1246F	PTPRT_uc010ggj.2_Silent_p.F1265F|PTPRT_uc010ggi.2_Silent_p.F449F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1246	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGGTGACCACGAAGGCGGCAG	0.517													20	37					0	0	0.00152264	0	0
MYBL2	4605	broad.mit.edu	37	20	42344652	42344652	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:42344652C>T	uc002xlb.1	+	14	2243	c.2028C>T	c.(2026-2028)TTC>TTT	p.F676F	MYBL2_uc010zwj.1_Silent_p.F652F	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	676						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ACCAGCTTTTCATGCAGGAGA	0.617													68	87					0	0	0.000781405	0	0
SEMG2	6407	broad.mit.edu	37	20	43835771	43835771	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:43835771G>A	uc010ggz.2	+	1	133	c.76_splice	c.e1+1	p.G26_splice	SEMG1_uc002xni.2_Splice_Site_p.G26_splice|SEMG1_uc002xnj.2_Splice_Site_p.G26_splice|SEMG1_uc002xnh.2_Splice_Site_p.G26_splice	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor						sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GGACAAAAAGGTGAGTGGAGA	0.453													11	19					0	0	0.000978159	0	0
SEMG2	6407	broad.mit.edu	37	20	43851778	43851778	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:43851778T>C	uc010ggz.2	+	2	1562	c.1505T>C	c.(1504-1506)GTA>GCA	p.V502A	SEMG2_uc002xnk.2_Missense_Mutation_p.V502A|SEMG2_uc002xnl.2_Intron	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	502	Repeat-rich region.|3-2.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GAAAAGCTAGTAGAAGGCAAG	0.398													10	22					0	0	0.000442599	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44507259	44507259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:44507259C>T	uc002xqd.2	+	2	2265	c.2062C>T	c.(2062-2064)CCT>TCT	p.P688S	ZSWIM3_uc010zxg.1_Missense_Mutation_p.P682S|ZSWIM1_uc010zxh.1_5'Flank|ZSWIM1_uc010ghi.2_5'Flank	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	688							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				GGAGGGATTCCCTCCTGCTAC	0.527													34	46					0	0	0.000692331	0	0
C20orf165	128497	broad.mit.edu	37	20	44515211	44515211	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:44515211C>T	uc002xqf.2	-	2	638	c.629G>A	c.(628-630)GGG>GAG	p.G210E		NM_080608	NP_542175	Q9BR10	CT165_HUMAN	chromosome 20 open reading frame 165	210						integral to membrane					0		Myeloproliferative disorder(115;0.0122)				GGGCATCTTCCCAGAGGCTGT	0.587													47	60					0	0	0.000781405	0	0
DDX27	55661	broad.mit.edu	37	20	47858689	47858689	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:47858689C>T	uc002xuh.2	+	18	2216	c.2155C>T	c.(2155-2157)CGC>TGC	p.R719C		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	719						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAAGAGGAATCGCAGAGCCAA	0.572													20	34					0	0	0.00121646	0	0
ATP9A	10079	broad.mit.edu	37	20	50273534	50273534	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:50273534C>T	uc002xwg.1	-	14	1449	c.1449G>A	c.(1447-1449)GAG>GAA	p.E483E	ATP9A_uc010gih.1_Silent_p.E347E|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	483	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GCTTCTCGGCCTCAGCCTGAT	0.617													15	17					0	0	0.000308642	0	0
ZFP64	55734	broad.mit.edu	37	20	50701609	50701609	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:50701609C>T	uc002xwk.2	-	9	1774	c.1425G>A	c.(1423-1425)CAG>CAA	p.Q475Q	ZFP64_uc002xwj.2_Silent_p.Q256Q	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGTCCCGGCCCTGGAAGGCAC	0.627													25	60					0	0	0.000720815	0	0
BCAS1	8537	broad.mit.edu	37	20	52601967	52601967	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:52601967G>A	uc002xws.2	-	7	1337	c.999C>T	c.(997-999)ACC>ACT	p.T333T	BCAS1_uc010zza.1_Silent_p.T91T|BCAS1_uc010zzb.1_Silent_p.T281T|BCAS1_uc010gim.2_Silent_p.T281T|BCAS1_uc002xwt.2_Silent_p.T333T|BCAS1_uc010gil.1_Silent_p.T333T	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	333						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CAGCCCCTTGGGTCTCCTGGG	0.498													38	51					0	0	0.0025221	0	0
MC3R	4159	broad.mit.edu	37	20	54824304	54824304	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:54824304C>T	uc002xxb.2	+	1	517	c.405C>T	c.(403-405)CTC>CTT	p.L135L		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	172	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TCTGCAACCTCCTGGCCATCG	0.562													33	43					0	0	0.00058488	0	0
C20orf107	388799	broad.mit.edu	37	20	55111285	55111285	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:55111285C>T	uc010zzh.1	+	2	387	c.307C>T	c.(307-309)CAA>TAA	p.Q103*	C20orf107_uc002xxz.2_Nonsense_Mutation_p.Q103*	NM_001013646	NP_001013668	Q5JX69	CT107_HUMAN	hypothetical protein LOC388799 precursor	103	Cytoplasmic (Potential).					integral to membrane					0			Colorectal(105;0.202)			AAAGAAAAATCAAAATGCTTC	0.398													35	56					0	0	0.000692331	0	0
ZNF831	128611	broad.mit.edu	37	20	57766570	57766570	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:57766570C>T	uc002yan.2	+	1	496	c.496C>T	c.(496-498)CAC>TAC	p.H166Y		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	166	C2H2-type 1.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CATCCGGTCCCACACGGGTGA	0.617													39	64					0	0	0.0025221	0	0
ZNF831	128611	broad.mit.edu	37	20	57769222	57769222	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:57769222G>A	uc002yan.2	+	1	3148	c.3148G>A	c.(3148-3150)GAG>AAG	p.E1050K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1050						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGCTCCCAGGGAGGCTACCTC	0.637													6	5					0	0	0.00116845	0	0
CDH4	1002	broad.mit.edu	37	20	60503270	60503270	+	Silent	SNP	C	T	T	rs113168761	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:60503270C>T	uc002ybn.1	+	12	1808	c.1794C>T	c.(1792-1794)ACC>ACT	p.T598T	CDH4_uc002ybp.1_Silent_p.T524T	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	598	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCAGCGGCACCGGGACCCTCC	0.612													42	74					0	0	0.000781405	0	0
DIDO1	11083	broad.mit.edu	37	20	61511988	61511988	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:61511988G>A	uc002ydr.1	-	16	5584	c.5320C>T	c.(5320-5322)CCA>TCA	p.P1774S	DIDO1_uc002yds.1_Missense_Mutation_p.P1774S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1774	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGCCCCCTTGGTCCCGGGAAA	0.627													29	40					0	0	0.001512	0	0
DIDO1	11083	broad.mit.edu	37	20	61528167	61528167	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:61528167G>A	uc002ydr.1	-	7	2034	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	DIDO1_uc002yds.1_Silent_p.F590F|DIDO1_uc002ydt.1_Silent_p.F590F|DIDO1_uc002ydu.1_Silent_p.F590F	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	590					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TGGTGCCCTTGAAACCTGAGG	0.597													45	50					0	0	0.000781405	0	0
PRIC285	85441	broad.mit.edu	37	20	62200605	62200605	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:62200605G>A	uc002yfm.2	-	5	1876	c.984C>T	c.(982-984)AAC>AAT	p.N328N	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	328				FNR -> SNH (in Ref. 2; BAE46995).	cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CGCTGCTGCGGTTGAACTCCA	0.657													4	11					0	0	0.00116845	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737457	62737457	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr20:62737457C>T	uc011abt.1	-	1	728	c.728G>A	c.(727-729)CGG>CAG	p.R243Q		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	243	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					AGAGCGGAGCCGCACGGCCCG	0.667													5	13					0	0	0.000602214	0	0
C21orf99	149992	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	C	C	rs148060711	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:14414844T>C	uc002yiy.3	+	2		c.281T>C			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						ACTGGGCCTGTGCCAATGGCC	0.433													4	39					0	0	0.000602214	0	0
KRTAP15-1	254950	broad.mit.edu	37	21	31813034	31813034	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:31813034G>A	uc002yod.2	+	1	389	c.389G>A	c.(388-390)AGG>AAG	p.R130K		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	130						intermediate filament					0						TTTTCATCCAGGAATTTCCAG	0.453													40	89					0	0	0.000781405	0	0
HUNK	30811	broad.mit.edu	37	21	33371423	33371423	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:33371423C>T	uc002yph.2	+	11	2431	c.2071C>T	c.(2071-2073)CTG>TTG	p.L691L		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	691					multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						GGAGGCCAGCCTGCCCCCACT	0.607													22	40					0	0	0.00278032	0	0
C21orf59	56683	broad.mit.edu	37	21	33974257	33974257	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:33974257G>A	uc002yqc.2	-	7	902	c.789C>T	c.(787-789)GCC>GCT	p.A263A	C21orf59_uc002ypx.1_Intron|C21orf59_uc002ypy.1_Intron|C21orf59_uc002ypz.1_Intron|C21orf59_uc010glx.2_Silent_p.A164A|C21orf59_uc002yqd.2_Silent_p.A231A|C21orf59_uc002yqa.3_3'UTR|C21orf59_uc002yqb.3_3'UTR|C21orf59_uc011adr.1_3'UTR	NM_021254	NP_067077	P57076	CU059_HUMAN	hypothetical protein LOC56683	263						cytosol|nucleus					0						AGTTTAAATAGGCATCATCAT	0.383													39	64					0	0	0.000680045	0	0
TTC3	7267	broad.mit.edu	37	21	38511016	38511016	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:38511016T>C	uc002yvz.2	+	19	1764	c.1659_splice	c.e19+2	p.E553_splice	TTC3_uc011aee.1_Splice_Site_p.E243_splice|TTC3_uc002ywa.2_Splice_Site_p.E553_splice|TTC3_uc002ywb.2_Splice_Site_p.E553_splice|TTC3_uc010gnf.2_Splice_Site_p.E318_splice|TTC3_uc002ywc.2_Splice_Site_p.E243_splice|TTC3_uc011aed.1_Splice_Site_p.E243_splice|TTC3_uc010gne.1_Splice_Site_p.E553_splice	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3						protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				CAGCCTGAGGTAAGATTTGTA	0.333													27	39					0	0	0.000878237	0	0
TTC3	7267	broad.mit.edu	37	21	38538329	38538329	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:38538329C>T	uc002yvz.2	+	33	3918	c.3813C>T	c.(3811-3813)CCC>CCT	p.P1271P	TTC3_uc011aee.1_Silent_p.P961P|TTC3_uc002ywa.2_Silent_p.P1271P|TTC3_uc002ywb.2_Silent_p.P1271P|TTC3_uc010gnf.2_Silent_p.P1036P|TTC3_uc002ywc.2_Silent_p.P961P|TTC3_uc002ywd.1_Silent_p.P335P	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1271					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				ATGGGCAACCCAAAGGGGTCT	0.468													41	51					0	0	0.00195071	0	0
BRWD1	54014	broad.mit.edu	37	21	40646331	40646331	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:40646331T>A	uc002yxk.1	-	13	1352	c.1213A>T	c.(1213-1215)ATT>TTT	p.I405F	BRWD1_uc002yxl.2_Missense_Mutation_p.I405F|BRWD1_uc010goe.1_RNA|BRWD1_uc010gof.1_5'UTR|BRWD1_uc010gog.1_RNA|BRWD1_uc010goh.1_RNA|BRWD1_uc010goi.1_Missense_Mutation_p.I125F	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	405	WD 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				TCCAATAAAATGCTCCTCCAT	0.348													30	43					0	0	0.000814825	0	0
BRWD1	54014	broad.mit.edu	37	21	40649245	40649245	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:40649245G>A	uc002yxk.1	-	11	1175	c.1036C>T	c.(1036-1038)CAT>TAT	p.H346Y	BRWD1_uc002yxl.2_Missense_Mutation_p.H346Y|BRWD1_uc010goe.1_RNA|BRWD1_uc010gof.1_5'UTR|BRWD1_uc010gog.1_RNA|BRWD1_uc010goh.1_RNA|BRWD1_uc010goi.1_Missense_Mutation_p.H66Y	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	346	WD 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				CTGATTACATGATCAGTACTA	0.333													13	22					0	0	0.00244969	0	0
DSCAM	1826	broad.mit.edu	37	21	41414514	41414514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:41414514C>T	uc002yyq.1	-	32	5922	c.5470G>A	c.(5470-5472)GAA>AAA	p.E1824K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1824	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGTTGCTCTTCCATCTTGGCG	0.537													38	42					0	0	0.00170553	0	0
DSCAM	1826	broad.mit.edu	37	21	41465660	41465660	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:41465660G>A	uc002yyq.1	-	21	4290	c.3838C>T	c.(3838-3840)CCA>TCA	p.P1280S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1280	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTTGCTAGTGGCTCGACTGTG	0.443													5	8					0	0	0.00116845	0	0
DSCAM	1826	broad.mit.edu	37	21	41465764	41465764	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:41465764G>A	uc002yyq.1	-	21	4186	c.3734C>T	c.(3733-3735)TCC>TTC	p.S1245F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1245	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AATTCTGTAGGAAAACGAGTC	0.483													5	17					0	0	0.000602214	0	0
DSCAM	1826	broad.mit.edu	37	21	41719737	41719737	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:41719737C>T	uc002yyq.1	-	6	1522	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	357	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACATTTTTTCCAGGGTTGAG	0.507													64	68					0	0	0.000781405	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838655	43838656	+	Missense_Mutation	DNP	GG	AA	AA	rs149115903		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:43838655_43838656GG>AA	uc002zbe.2	+	7	1019_1020	c.983_984GG>AA	c.(982-984)CGG>CAA	p.R328Q	UBASH3A_uc002zbf.2_Missense_Mutation_p.R290Q|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.R290Q	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	328	SH3.					cytosol|nucleus				ovary(3)	3						ACGGGCTGCCGGGGCTTCCTGC	0.614													19	19					0	0	6.4e-05	0	0
TRPM2	7226	broad.mit.edu	37	21	45846545	45846545	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:45846545G>A	uc002zet.1	+	27	4011	c.3798G>A	c.(3796-3798)ACG>ACA	p.T1266T	TRPM2_uc002zeu.1_Silent_p.T1266T|TRPM2_uc002zew.1_Silent_p.T1266T|TRPM2_uc010gpt.1_Silent_p.T1316T|TRPM2_uc002zex.1_Silent_p.T1052T|TRPM2_uc002zey.1_Silent_p.T779T|uc011afe.1_5'Flank|TRPM2_uc011aff.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1266	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGCGACAGACGGAGTTCCTGA	0.587													29	53					0	0	0.00111076	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46058080	46058080	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:46058080C>T	uc002zfq.2	+	1	808	c.746C>T	c.(745-747)TCC>TTC	p.S249F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	249						keratin filament					0						GGCCAGAAGTCCAGCTGCTGA	0.672													14	17					0	0	0.00074312	0	0
PCNT	5116	broad.mit.edu	37	21	47783490	47783490	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr21:47783490G>A	uc002zji.3	+	14	2357	c.2250G>A	c.(2248-2250)ACG>ACA	p.T750T	PCNT_uc002zjj.2_Silent_p.T632T	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	750	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GAAAAGAAACGGACTGGAAAG	0.403													52	75					0	0	0.000781405	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17119551	17119551	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:17119551C>T	uc002zls.1	+	2		c.388C>T			psiTPTE22_uc002zlr.2_RNA|psiTPTE22_uc002zlt.2_RNA					Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						ACTTTATATTCCTTCGGAGTA	0.333													12	33					0	0	0.000978159	0	0
SLC25A18	83733	broad.mit.edu	37	22	18064157	18064158	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:18064157_18064158GG>AA	uc002zmp.1	+	5	671_672	c.177_178GG>AA	c.(175-180)GAGGGC>GAAAGC	p.G60S	SLC25A18_uc010gqx.2_Missense_Mutation_p.G60S|SLC25A18_uc002zmq.1_Missense_Mutation_p.G60S	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	60	Solcar 1.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	CTCGGGCGGAGGGCTTCTTCGG	0.634													22	51					0	0	6.4e-05	0	0
CLTCL1	8218	broad.mit.edu	37	22	19197920	19197920	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:19197920G>A	uc002zpb.2	-	20	3240	c.3165C>T	c.(3163-3165)ATC>ATT	p.I1055I	CLTCL1_uc011agv.1_Silent_p.I1055I|CLTCL1_uc011agw.1_Silent_p.I1055I|CLTCL1_uc011agt.1_5'Flank|CLTCL1_uc011agu.1_5'Flank|CLTCL1_uc010grm.1_5'Flank|CLTCL1_uc002zpe.2_Silent_p.I15I|CLTCL1_uc002zpd.1_Silent_p.I15I	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1055	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CGATGCTCGCGATGTCCAGTG	0.537			T	?	ALCL								31	28					0	0	0.0024448	0	0
LOC96610	96610	broad.mit.edu	37	22	23040834	23040834	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:23040834G>A	uc011aim.1	+	137		c.8741G>A								Parts of antibodies, mostly variable regions.												0						CGGCCTCCCTGACAATCTCTG	0.537													53	71					0	0	0.000781405	0	0
BCR	613	broad.mit.edu	37	22	23615826	23615827	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:23615826_23615827GC>AA	uc002zww.2	+	8	2576_2577	c.1980_1981GC>AA	c.(1978-1983)TTGCTG>TTAATG	p.L661M	BCR_uc002zwx.2_Missense_Mutation_p.L661M|BCR_uc011aiy.1_Missense_Mutation_p.L250M|BCR_uc010gtx.1_Missense_Mutation_p.L128M	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	661	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GGCAGGACTTGCTGAAGCACAC	0.574			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								21	38					0	0	6.4e-05	0	0
IGLL3	91353	broad.mit.edu	37	22	25715866	25715866	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:25715866A>G	uc003abr.2	+	2	588	c.488A>G	c.(487-489)GAT>GGT	p.D163G		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						TGGAAGGCAGATGGTACCCCC	0.577													37	54					0	0	0.00285205	0	0
MYO18B	84700	broad.mit.edu	37	22	26164791	26164791	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:26164791G>A	uc003abz.1	+	4	1158	c.908G>A	c.(907-909)GGG>GAG	p.G303E	MYO18B_uc003aca.1_Missense_Mutation_p.G184E|MYO18B_uc010guy.1_Missense_Mutation_p.G184E|MYO18B_uc010guz.1_Missense_Mutation_p.G184E|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	303						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AAGGACGTAGGGAGTGAAGGG	0.587													3	5					0	0	6.4e-05	0	0
SEZ6L	23544	broad.mit.edu	37	22	26692895	26692895	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:26692895C>T	uc003acb.2	+	4	1167	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	SEZ6L_uc003acc.2_Silent_p.I337I|SEZ6L_uc011akc.1_Silent_p.I337I|SEZ6L_uc003acd.2_Silent_p.I337I|SEZ6L_uc011akd.1_Silent_p.I337I|SEZ6L_uc003ace.2_Silent_p.I337I|SEZ6L_uc003acf.1_Silent_p.I110I|SEZ6L_uc010gvc.1_Silent_p.I110I	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	337	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TGCTCTCCATCCGCGGGGTGG	0.587													11	13					0	0	0.00244969	0	0
ASPHD2	57168	broad.mit.edu	37	22	26830365	26830366	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:26830365_26830366GG>TT	uc003acg.2	+	2	1181_1182	c.784_785GG>TT	c.(784-786)GGG>TTG	p.G262L		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	262	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GACCTGTATTGGGAACAATGTT	0.53													7	132					0	0	6.4e-05	0	0
PES1	23481	broad.mit.edu	37	22	30977392	30977392	+	Missense_Mutation	SNP	C	T	T	rs145353108	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:30977392C>T	uc003aij.1	-	8	825	c.751G>A	c.(751-753)GAG>AAG	p.E251K	PES1_uc003aik.1_Missense_Mutation_p.E251K|PES1_uc003ail.1_Missense_Mutation_p.E234K|PES1_uc003aim.1_Missense_Mutation_p.E251K|PES1_uc003ain.1_Missense_Mutation_p.E112K|PES1_uc003aio.1_Missense_Mutation_p.E112K	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	251	Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						GCCTGACCCTCGAGCTAGTAG	0.632													20	25					0	0	0.00121646	0	0
INPP5J	27124	broad.mit.edu	37	22	31524544	31524544	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:31524544G>A	uc003aju.3	+	9	2189	c.2097G>A	c.(2095-2097)AAG>AAA	p.K699K	INPP5J_uc003ajv.3_Silent_p.K332K|INPP5J_uc003ajs.3_Silent_p.K332K|INPP5J_uc011alk.1_Silent_p.K632K|INPP5J_uc010gwg.2_Silent_p.K264K|INPP5J_uc003ajw.2_Silent_p.K135K|INPP5J_uc003ajt.3_Silent_p.K331K|INPP5J_uc003ajx.2_Silent_p.K64K|INPP5J_uc003ajy.2_Silent_p.K64K|INPP5J_uc003ajz.2_Silent_p.K139K	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	699	Catalytic (Potential).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CAGGACGGAAGAGCCACCGAC	0.607													21	20					0	0	0.00229938	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334373	37334373	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:37334373C>T	uc003aqa.3	+	14	2740	c.2523C>T	c.(2521-2523)TCC>TCT	p.S841S	CSF2RB_uc003aqc.3_Silent_p.S847S	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	841	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	AACCTTCTTCCCCGGGACCCG	0.632													64	78					0	0	0.000781405	0	0
MFNG	4242	broad.mit.edu	37	22	37872944	37872944	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:37872944G>A	uc003ass.1	-	5	807	c.637C>T	c.(637-639)CCG>TCG	p.P213S	MFNG_uc011ani.1_Missense_Mutation_p.P91S|MFNG_uc011anj.1_Missense_Mutation_p.P199S	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	213	Lumenal (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					CTGGCCCACGGAGCCATCTTC	0.622													15	24					0	0	0.000958276	0	0
GGA1	26088	broad.mit.edu	37	22	38028055	38028055	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:38028055C>T	uc003atc.2	+	15	1946	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F	GGA1_uc003atd.2_Silent_p.F440F|GGA1_uc003ate.2_Silent_p.F523F|GGA1_uc003atf.2_Silent_p.F454F|SH3BP1_uc003atg.1_5'Flank	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	527	GAE.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					GCATCCTCTTCCATTTTGCCC	0.632													19	24					0	0	0.000958276	0	0
SOX10	6663	broad.mit.edu	37	22	38374057	38374057	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:38374057T>C	uc003aun.1	-	3	792	c.514A>G	c.(514-516)AAG>GAG	p.K172E	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Missense_Mutation_p.K172E	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	172	HMG box.					cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					GGCTGGTACTTGTAGTCCGGG	0.677													6	12					0	0	0.00116845	0	0
DDX17	10521	broad.mit.edu	37	22	38884057	38884057	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:38884057T>C	uc003avy.3	-	12	1614	c.1511A>G	c.(1510-1512)CAC>CGC	p.H504R	DDX17_uc003avw.3_5'UTR|DDX17_uc010gxp.2_5'UTR|DDX17_uc003avx.3_Missense_Mutation_p.H504R	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	425	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					GCCAATACGGTGCACATAATC	0.478													33	54					0	0	0.0024448	0	0
MKL1	57591	broad.mit.edu	37	22	40827438	40827438	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:40827438G>A	uc003ayv.1	-	3	317	c.110C>T	c.(109-111)TCG>TTG	p.S37L	MKL1_uc003ayw.1_Missense_Mutation_p.S37L|MKL1_uc010gye.1_Missense_Mutation_p.S37L|MKL1_uc010gyf.1_Missense_Mutation_p.S37L	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	37	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GACCAGCTCCGATCTCTCCGG	0.473			T	RBM15	acute megakaryocytic leukemia								100	131					0	0	0.000781405	0	0
WBP2NL	164684	broad.mit.edu	37	22	42415416	42415416	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:42415416C>T	uc011ape.1	+	3	180	c.164C>T	c.(163-165)TCA>TTA	p.S55L	WBP2NL_uc003bbt.2_Missense_Mutation_p.S55L|WBP2NL_uc011apk.1_Intron|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_5'Flank	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	55	GRAM.				egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						TTTCTCACTTCATACCGGGTA	0.383													33	34					0	0	0.00058488	0	0
ARSA	410	broad.mit.edu	37	22	51064664	51064664	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr22:51064664G>A	uc003bnb.3	-	6	1144	c.891C>T	c.(889-891)CTC>CTT	p.L297L	ARSA_uc003bna.3_Silent_p.L213L|ARSA_uc003bnc.3_Silent_p.L297L|ARSA_uc003bnd.3_Silent_p.L297L|ARSA_uc003bmz.3_Silent_p.L297L	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	297						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	CACACCGCAAGAGACCGGAGC	0.652													14	15					0	0	0.00244969	0	0
TRNT1	51095	broad.mit.edu	37	3	3170788	3170788	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:3170788C>T	uc003bpp.3	+	2	166	c.64C>T	c.(64-66)CTT>TTT	p.L22F	TRNT1_uc003bpk.2_RNA|TRNT1_uc010hbv.2_Missense_Mutation_p.L22F|TRNT1_uc003bpm.2_RNA|TRNT1_uc003bpn.1_RNA|uc003bpo.1_5'Flank	NM_182916	NP_886552	Q96Q11	TRNT1_HUMAN	tRNA nucleotidyl transferase, CCA-adding, 1	22					protein targeting to mitochondrion|tRNA 3'-end processing	mitochondrion	ATP binding|tRNA adenylyltransferase activity|tRNA binding				0				Epithelial(13;0.00226)|OV - Ovarian serous cystadenocarcinoma(96;0.00592)|all cancers(10;0.011)		TAGGCTGTGCCTTCCGAAGCA	0.493													33	47					0	0	0.0024448	0	0
GRM7	2917	broad.mit.edu	37	3	7620125	7620125	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:7620125G>A	uc003bqm.2	+	8	1806	c.1532G>A	c.(1531-1533)TGG>TAG	p.W511*	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Nonsense_Mutation_p.W511*|GRM7_uc003bql.2_Nonsense_Mutation_p.W511*|GRM7_uc003bqn.1_Nonsense_Mutation_p.W94*|GRM7_uc010hch.1_Nonsense_Mutation_p.W22*	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	511	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GACATGCAGTGGGGTAAAGGA	0.448													4	11					0	0	0.00024832	0	0
SRGAP3	9901	broad.mit.edu	37	3	9094804	9094804	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:9094804G>A	uc003brf.1	-	9	1906	c.1230C>T	c.(1228-1230)TCC>TCT	p.S410S	SRGAP3_uc003brg.1_Silent_p.S410S|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brj.1_Silent_p.S270S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	410					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCGACTTGACGGACTCTGTCG	0.488			T	RAF1	pilocytic astrocytoma								30	30					0	0	0.00058488	0	0
IL17RC	84818	broad.mit.edu	37	3	9969872	9969872	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:9969872C>T	uc003bua.2	+	10	1294	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	CIDEC_uc003bto.2_Intron|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Missense_Mutation_p.S257F|IL17RC_uc003btz.2_Missense_Mutation_p.S282F|IL17RC_uc011atp.1_Missense_Mutation_p.S138F|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.S267F|IL17RC_uc010hct.2_Missense_Mutation_p.S282F|IL17RC_uc010hcu.2_Missense_Mutation_p.S282F|IL17RC_uc010hcv.2_Missense_Mutation_p.S267F|IL17RC_uc011atq.1_Missense_Mutation_p.S267F|IL17RC_uc003buc.2_5'UTR|IL17RC_uc003bue.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	353	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GAACCTGACTCCGTTAGGACG	0.647													34	57					0	0	0.000692331	0	0
CAND2	23066	broad.mit.edu	37	3	12869058	12869058	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:12869058C>T	uc003bxk.2	+	13	3379	c.3330C>T	c.(3328-3330)TTC>TTT	p.F1110F	CAND2_uc003bxj.2_Silent_p.F993F	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	1110	HEAT 24.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						TCTGTGAGTTCCTGAACCATG	0.567													30	45					0	0	0.00209593	0	0
NR2C2	7182	broad.mit.edu	37	3	15062379	15062379	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:15062379C>G	uc003bzj.3	+	5	713	c.496C>G	c.(496-498)CGG>GGG	p.R166G	NR2C2_uc003bzi.2_Missense_Mutation_p.R185G	NM_003298	NP_003289	P49116	NR2C2_HUMAN	nuclear receptor subfamily 2, group C, member 2	166	NR C4-type.|Nuclear receptor.				cell differentiation|nervous system development|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						TAAACATCACCGGAACCGCTG	0.413													3	84					0	0	6.4e-05	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15115607	15115607	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:15115607G>A	uc003bzm.1	-	14	2651	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	ZFYVE20_uc010hek.1_Silent_p.F679F	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	679	Necessary for the interaction with RAB5A.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						CTGGCTGAATGAATGGATTCC	0.557													58	79					0	0	0.000781405	0	0
PLCL2	23228	broad.mit.edu	37	3	17109548	17109548	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:17109548C>T	uc011awc.1	+	8	3276	c.3171C>T	c.(3169-3171)ACC>ACT	p.T1057T	PLCL2_uc011awd.1_Silent_p.T939T	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1065					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GGAATATTACCATCTTAAAGG	0.403													17	49					0	0	0.000958276	0	0
SATB1	6304	broad.mit.edu	37	3	18462346	18462346	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:18462346G>A	uc003cbh.2	-	2	1849	c.114C>T	c.(112-114)AGC>AGT	p.S38S	SATB1_uc003cbi.2_Silent_p.S38S|SATB1_uc003cbj.2_Silent_p.S38S	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	38	Nuclear localization signal.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TTCCTAGCGGGCTCCCGTTCT	0.512													33	52					0	0	0.00058488	0	0
EFHB	151651	broad.mit.edu	37	3	19924167	19924167	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:19924167G>A	uc003cbl.3	-	12	2399	c.2203C>T	c.(2203-2205)CGT>TGT	p.R735C	EFHB_uc003cbm.2_Missense_Mutation_p.R605C	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	735					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						CTGATGCGACGAATTCGGGGA	0.413													15	17					0	0	0.00074312	0	0
KAT2B	8850	broad.mit.edu	37	3	20136881	20136881	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:20136881T>A	uc003cbq.2	+	3	1003	c.557T>A	c.(556-558)GTT>GAT	p.V186D		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	186					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ACCAAACAAGTTTATTTCTAT	0.368													7	14					0	0	0.00198382	0	0
KAT2B	8850	broad.mit.edu	37	3	20193934	20193934	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:20193934G>T	uc003cbq.2	+	18	2862	c.2416G>T	c.(2416-2418)GAG>TAG	p.E806*		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	806	Bromo.				cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAACCCCCCTGAGAGTGAATA	0.393													12	19					4.3838e-07	1.97495e-06	0.00185496	1	0
ZNF385D	79750	broad.mit.edu	37	3	21552419	21552419	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:21552419C>A	uc003cce.2	-	4	781	c.373G>T	c.(373-375)GAC>TAC	p.D125Y	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	125						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TTTGCGCTGTCCTTGGCAGTT	0.463													25	27					3.01185e-09	1.36285e-08	0.000586117	1	0
ARPP21	10777	broad.mit.edu	37	3	35763143	35763143	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:35763143A>T	uc003cgb.2	+	14	1306	c.1042A>T	c.(1042-1044)AGC>TGC	p.S348C	ARPP21_uc003cga.2_Missense_Mutation_p.S294C|ARPP21_uc011axy.1_Missense_Mutation_p.S314C|ARPP21_uc003cgf.2_Missense_Mutation_p.S149C|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	348	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TCGACAGAGCAGCTCAGAAAA	0.537													4	10					0	0	0.000602214	0	0
SCN5A	6331	broad.mit.edu	37	3	38647623	38647623	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:38647623C>T	uc003cio.2	-	10	1351	c.1157G>A	c.(1156-1158)GGG>GAG	p.G386E	SCN5A_uc003cin.2_Missense_Mutation_p.G386E|SCN5A_uc003cil.3_Missense_Mutation_p.G386E|SCN5A_uc010hhi.2_Missense_Mutation_p.G386E|SCN5A_uc010hhk.2_Missense_Mutation_p.G386E|SCN5A_uc011ayr.1_Missense_Mutation_p.G386E|SCN5A_uc010hhj.1_5'UTR	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	386					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTAGATCTTCCCTGCGGACCT	0.562													16	29					0	0	0.000422831	0	0
SCN10A	6336	broad.mit.edu	37	3	38739732	38739732	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:38739732G>A	uc003ciq.2	-	27	4979	c.4979C>T	c.(4978-4980)TCG>TTG	p.S1660L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1660	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCAGCCGGCCGACGTGGTAAT	0.607													33	41					0	0	0.000692331	0	0
SCN10A	6336	broad.mit.edu	37	3	38753718	38753718	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:38753718G>A	uc003ciq.2	-	22	4023	c.4023C>T	c.(4021-4023)TTC>TTT	p.F1341F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1341	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGACCCAGAAGAAGCTGCCAG	0.438													52	46					0	0	0.000781405	0	0
XIRP1	165904	broad.mit.edu	37	3	39226980	39226980	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:39226980G>A	uc003cjk.1	-	2	4178	c.3957C>T	c.(3955-3957)CCC>CCT	p.P1319P	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Silent_p.P2P	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1319	Pro-rich.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TCTTCTTTGGGGGCATGGTGG	0.607													38	43					0	0	0.00195071	0	0
CDC25A	993	broad.mit.edu	37	3	48205896	48205896	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:48205896A>G	uc003csh.1	-	13	1587	c.1223T>C	c.(1222-1224)GTT>GCT	p.V408A	CDC25A_uc003csi.1_Missense_Mutation_p.V368A	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	408	Rhodanese.				cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		GAAGTCTTCAACCTCTTCTTC	0.458													14	22					0	0	0.00244969	0	0
COL7A1	1294	broad.mit.edu	37	3	48626411	48626411	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:48626411G>A	uc003ctz.2	-	18	2333	c.2332C>T	c.(2332-2334)CGT>TGT	p.R778C		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	778	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTCGACACACGACCCACAGGC	0.602													29	53					0	0	0.0024448	0	0
CELSR3	1951	broad.mit.edu	37	3	48677117	48677117	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:48677117G>A	uc003cul.2	-	34	10182	c.9901C>T	c.(9901-9903)CCA>TCA	p.P3301S	CELSR3_uc003cuf.1_Missense_Mutation_p.P3399S|CELSR3_uc010hkf.2_Missense_Mutation_p.P591S|CELSR3_uc010hkg.2_Missense_Mutation_p.P1284S	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3301	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCTGAGTCTGGCGACAGCTCC	0.607													41	75					0	0	0.00195071	0	0
USP19	10869	broad.mit.edu	37	3	49149058	49149058	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:49149058C>T	uc003cwd.1	-	20	2944	c.2783G>A	c.(2782-2784)CGG>CAG	p.R928Q	USP19_uc003cwa.2_Missense_Mutation_p.R736Q|USP19_uc003cvz.3_Missense_Mutation_p.R1031Q|USP19_uc011bcg.1_Missense_Mutation_p.R1019Q|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.R686Q|USP19_uc011bch.1_Missense_Mutation_p.R1029Q	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	928	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGCCCACACCCGGGGAAGCCC	0.642													15	22					0	0	0.000566183	0	0
USP4	7375	broad.mit.edu	37	3	49362330	49362330	+	Silent	SNP	A	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:49362330A>C	uc003cwq.2	-	5	709	c.630T>G	c.(628-630)GGT>GGG	p.G210G	USP4_uc003cwr.2_Silent_p.G210G	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	210					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		CTCCTACCTGACCCTGGTATA	0.547													50	76					0	0	0.000781405	0	0
CAMKV	79012	broad.mit.edu	37	3	49898401	49898401	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:49898401C>T	uc003cxt.1	-	7	806	c.613G>A	c.(613-615)GCC>ACC	p.A205T	CAMKV_uc011bcy.1_Missense_Mutation_p.A130T|CAMKV_uc003cxv.1_Intron|CAMKV_uc003cxw.1_Missense_Mutation_p.A37T|CAMKV_uc003cxx.1_Missense_Mutation_p.A37T|CAMKV_uc003cxu.2_Missense_Mutation_p.A205T|CAMKV_uc011bcz.1_Missense_Mutation_p.A168T|CAMKV_uc011bda.1_Missense_Mutation_p.A162T|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	205	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		ACTCCAATGGCCCAGCAGTCC	0.592													22	23					0	0	0.000878237	0	0
SEMA3F	6405	broad.mit.edu	37	3	50220638	50220638	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:50220638G>A	uc003cyj.2	+	11	1236	c.1038G>A	c.(1036-1038)CAG>CAA	p.Q346Q	SEMA3F_uc003cyk.2_Silent_p.Q315Q	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	346	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		TTGTCCAGCAGACCCAGGACG	0.662													24	23					0	0	0.000878237	0	0
DNAH1	25981	broad.mit.edu	37	3	52433001	52433001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:52433001G>A	uc011bef.1	+	76	12486	c.12225G>A	c.(12223-12225)TGG>TGA	p.W4075*	DNAH1_uc003ddv.2_Nonsense_Mutation_p.W933*	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4140					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGAGCTCTGGAGTGCCAAGG	0.567													29	29					0	0	0.000878237	0	0
SEMA3G	56920	broad.mit.edu	37	3	52470059	52470059	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:52470059C>T	uc003dea.1	-	16	1909	c.1909G>A	c.(1909-1911)GAG>AAG	p.E637K		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	637	Ig-like C2-type.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		AGCCCCCGCTCCGTGTGCAAG	0.647													10	19					0	0	0.000673444	0	0
SEMA3G	56920	broad.mit.edu	37	3	52472075	52472075	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:52472075G>A	uc003dea.1	-	14	1650	c.1650C>T	c.(1648-1650)TAC>TAT	p.Y550Y		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	550					multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GGCTGGGGCGGTAGTGGGTAC	0.672													9	16					0	0	0.000274275	0	0
ITIH1	3697	broad.mit.edu	37	3	52825621	52825621	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:52825621G>A	uc003dfs.2	+	21	2607	c.2583G>A	c.(2581-2583)AGG>AGA	p.R861R	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Intron|ITIH1_uc010hmo.1_Silent_p.R415R|ITIH1_uc003dfu.2_Silent_p.R227R	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	861	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TGGTGGTGAGGAACCGCCGGC	0.582													7	19					0	0	0.000157383	0	0
ERC2	26059	broad.mit.edu	37	3	56468558	56468558	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:56468558C>T	uc003dhr.1	-	2	734	c.478G>A	c.(478-480)GAG>AAG	p.E160K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	160	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		AGGTCATTCTCTCTCTGCAGT	0.483													80	100					0	0	0.000781405	0	0
FAM3D	131177	broad.mit.edu	37	3	58631246	58631246	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:58631246C>T	uc003dkq.2	-	5	550	c.253G>A	c.(253-255)GAA>AAA	p.E85K		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	85					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		ATGCGGTCTTCAAAGCACATA	0.423													12	12					0	0	0.000978159	0	0
PTPRG	5793	broad.mit.edu	37	3	62142769	62142769	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:62142769C>T	uc003dlb.2	+	7	1430	c.711C>T	c.(709-711)GTC>GTT	p.V237V	PTPRG_uc003dlc.2_Silent_p.V237V	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	237	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity	p.V237F(1)		ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		ATCCTTTCGTCCTCCGGGACC	0.517													26	40					0	0	0.00127121	0	0
CNTN3	5067	broad.mit.edu	37	3	74347205	74347205	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:74347205G>A	uc003dpm.1	-	17	2384	c.2304C>T	c.(2302-2304)ATC>ATT	p.I768I		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	768	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AATATGGCACGATGCTTTCAT	0.453													21	29					0	0	0.00188189	0	0
GBE1	2632	broad.mit.edu	37	3	81699050	81699050	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:81699050C>T	uc003dqg.2	-	5	735	c.452G>A	c.(451-453)GGA>GAA	p.G151E	GBE1_uc011bgm.1_Missense_Mutation_p.G110E	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	151					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		CAAGATCTCTCCGCTTTTACT	0.363									Glycogen_Storage_Disease_type_IV				22	15					0	0	0.00229938	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806869	97806869	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:97806869C>T	uc011bgs.1	+	1	853	c.853C>T	c.(853-855)CCC>TCC	p.P285S		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GATTATAATTCCCCTGCTAAA	0.373													12	15					0	0	0.000978159	0	0
ZPLD1	131368	broad.mit.edu	37	3	102171970	102171970	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:102171970G>A	uc003dvs.1	+	10	1196	c.314G>A	c.(313-315)GGA>GAA	p.G105E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G121E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G105E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	105	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GAGGGCTGTGGAAACAACCTG	0.443													10	11					0	0	0.00185496	0	0
CBLB	868	broad.mit.edu	37	3	105438891	105438891	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:105438891C>T	uc003dwc.2	-	10	1729	c.1407G>A	c.(1405-1407)AAG>AAA	p.K469K	CBLB_uc011bhi.1_Silent_p.K491K|CBLB_uc003dwd.1_Silent_p.K469K|CBLB_uc003dwe.1_Silent_p.K469K|CBLB_uc011bhj.1_RNA	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	469					cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						CTAGTTTTACCTTTCGGACGT	0.438			Mis S		AML								10	8					0	0	0.000978159	0	0
CCDC54	84692	broad.mit.edu	37	3	107096864	107096864	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:107096864G>A	uc003dwi.1	+	1	677	c.430G>A	c.(430-432)GAA>AAA	p.E144K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	144	Potential.										0						GACAGAACTGGAAATTCAGAA	0.388													25	21					0	0	0.00278032	0	0
TRAT1	50852	broad.mit.edu	37	3	108568024	108568024	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:108568024G>A	uc003dxi.1	+	5	370	c.226G>A	c.(226-228)GAA>AAA	p.E76K	TRAT1_uc010hpx.1_Missense_Mutation_p.E39K	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	76	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						ACCAATGGATGAAAATTGCTA	0.343													20	33					0	0	0.00278032	0	0
GUCA1C	9626	broad.mit.edu	37	3	108672495	108672495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:108672495C>T	uc003dxj.2	-	1	183	c.115G>A	c.(115-117)GAA>AAA	p.E39K	GUCA1C_uc003dxk.2_Missense_Mutation_p.E39K	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	39	EF-hand 1.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						GTCTTAAATTCATGTAGTGTT	0.388													45	61					0	0	0.000781405	0	0
MORC1	27136	broad.mit.edu	37	3	108682267	108682267	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:108682267G>A	uc003dxl.2	-	27	2880	c.2793C>T	c.(2791-2793)CTC>CTT	p.L931L	MORC1_uc011bhn.1_Silent_p.L910L	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	931	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TCACCAGTTGGAGTTTCTGCA	0.214													18	37					0	0	0.00229938	0	0
PHLDB2	90102	broad.mit.edu	37	3	111693387	111693387	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:111693387G>T	uc010hqa.2	+	18	4150	c.3739G>T	c.(3739-3741)GGT>TGT	p.G1247C	PHLDB2_uc003dyc.2_Missense_Mutation_p.G1231C|PHLDB2_uc003dyd.2_Missense_Mutation_p.G1204C|PHLDB2_uc003dyg.2_Missense_Mutation_p.G1247C|PHLDB2_uc003dyh.2_Missense_Mutation_p.G1204C|PHLDB2_uc003dyi.2_Missense_Mutation_p.G738C|PHLDB2_uc003dyj.2_Missense_Mutation_p.G302C	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1247						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GGGGGCAGAAGGTTACACTCA	0.463													31	63					2.87052e-16	1.31142e-15	0.00111076	1	0
CD200R1L	344807	broad.mit.edu	37	3	112546307	112546307	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:112546307G>A	uc003dzi.1	-	3	563	c.337C>T	c.(337-339)CGT>TGT	p.R113C	CD200R1L_uc011bhw.1_Missense_Mutation_p.R92C|CD200R1L_uc010hqf.1_Missense_Mutation_p.R92C	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	113	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						TCCACCGGACGAATCTGAAGG	0.458													33	30					0	0	0.00283554	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113656944	113656944	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:113656944G>A	uc003eaq.3	+	15	1721	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.E382K|GRAMD1C_uc003eas.2_Missense_Mutation_p.E344K|GRAMD1C_uc003eat.2_Missense_Mutation_p.E208K	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	549						integral to membrane				ovary(2)|skin(1)	3						AAAGAAAAAGGAAATGGAAAA	0.264													14	17					0	0	0.000958276	0	0
LSAMP	4045	broad.mit.edu	37	3	115561418	115561418	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:115561418G>A	uc003ebt.2	-	5	1157	c.657C>T	c.(655-657)CCC>CCT	p.P219P	LSAMP_uc011bis.1_Silent_p.P219P	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	219	Ig-like C2-type 3.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		CTGTGATAGTGGGAGGATCTG	0.408													30	32					0	0	0.00111076	0	0
STXBP5L	9515	broad.mit.edu	37	3	120957838	120957838	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:120957838C>T	uc003eec.3	+	13	1345	c.1205C>T	c.(1204-1206)CCA>CTA	p.P402L	STXBP5L_uc011bji.1_Missense_Mutation_p.P402L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	402					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TTTGAAAATCCATATCCCATG	0.313													9	12					0	0	0.000673444	0	0
FBXO40	51725	broad.mit.edu	37	3	121342150	121342150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:121342150G>A	uc003eeg.2	+	3	2084	c.1874G>A	c.(1873-1875)AGG>AAG	p.R625K		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	625					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AAGAAAAAGAGGTATTCCCAT	0.418													29	49					0	0	0.001512	0	0
GOLGB1	2804	broad.mit.edu	37	3	121415004	121415004	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:121415004C>T	uc003eei.3	-	13	4477	c.4351G>A	c.(4351-4353)GAT>AAT	p.D1451N	GOLGB1_uc010hrc.2_Missense_Mutation_p.D1456N|GOLGB1_uc003eej.3_Missense_Mutation_p.D1417N|GOLGB1_uc011bjm.1_Missense_Mutation_p.D1337N|GOLGB1_uc010hrd.1_Missense_Mutation_p.D1415N	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1451	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ATCCTCTCATCATGCTCTTTG	0.378													41	59					0	0	0.00285205	0	0
ILDR1	286676	broad.mit.edu	37	3	121707255	121707255	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:121707255C>T	uc003ees.2	-	8	1706	c.1600G>A	c.(1600-1602)GAG>AAG	p.E534K	ILDR1_uc003eeq.2_Missense_Mutation_p.E502K|ILDR1_uc003eer.2_Missense_Mutation_p.E490K|ILDR1_uc010hrg.2_Missense_Mutation_p.E445K	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	534	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CTGTCTTTCTCCTGGGAAATA	0.433													7	18					0	0	0.000673444	0	0
CASR	846	broad.mit.edu	37	3	122002653	122002653	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:122002653C>T	uc003eev.3	+	7	2224	c.1852C>T	c.(1852-1854)CTC>TTC	p.L618F	CASR_uc003eew.3_Missense_Mutation_p.L628F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	618	Helical; Name=1; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CGCACTCACCCTCTTTGCCGT	0.547													25	43					0	0	0.00278032	0	0
MYLK	4638	broad.mit.edu	37	3	123512611	123512611	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:123512611G>A	uc003ego.2	-	4	360	c.78C>T	c.(76-78)TCC>TCT	p.S26S	MYLK_uc011bjw.1_Silent_p.S26S|MYLK_uc003egp.2_Silent_p.S26S|MYLK_uc003egq.2_Silent_p.S26S|MYLK_uc003egr.2_Silent_p.S26S|MYLK_uc003egs.2_5'UTR|MYLK_uc010hrs.1_Silent_p.S26S|MYLK_uc003egu.1_Silent_p.S36S	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	26					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCAGGGGCATGGAGTCAACTC	0.547													22	23					0	0	0.00188189	0	0
KALRN	8997	broad.mit.edu	37	3	124165124	124165124	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:124165124G>A	uc003ehg.2	+	20	3550	c.3423_splice	c.e20+1	p.Q1141_splice	KALRN_uc010hrv.1_Splice_Site_p.Q1132_splice|KALRN_uc003ehf.1_Splice_Site_p.Q1141_splice|KALRN_uc011bjy.1_Splice_Site_p.Q1132_splice|KALRN_uc003ehh.1_Splice_Site_p.Q487_splice	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CGCTAAGCAGGTTGTCCAAAG	0.557													15	18					0	0	0.000566183	0	0
MUC13	56667	broad.mit.edu	37	3	124630988	124630988	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:124630988C>T	uc003ehq.1	-	9	1236	c.1212G>A	c.(1210-1212)AAG>AAA	p.K404K		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	404	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						CAAATGCACACCTGAAATACA	0.393													10	21					0	0	0.000673444	0	0
CCDC37	348807	broad.mit.edu	37	3	126155162	126155162	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:126155162G>A	uc003eiu.1	+	17	1850	c.1751G>A	c.(1750-1752)CGA>CAA	p.R584Q	CCDC37_uc010hsg.1_Missense_Mutation_p.R585Q	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	584										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		TGCCGCTCACGACCCCCAGCC	0.547													14	18					0	0	0.000308642	0	0
PLXNA1	5361	broad.mit.edu	37	3	126708300	126708300	+	Missense_Mutation	SNP	C	G	G	rs139269120		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:126708300C>G	uc003ejg.2	+	1	799	c.795C>G	c.(793-795)GAC>GAG	p.D265E		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	288	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		TCTGTGTGGACGACCCCAAAT	0.617													63	100					0	0	0.000781405	0	0
IFT122	55764	broad.mit.edu	37	3	129202459	129202459	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:129202459C>T	uc003emm.2	+	15	1991	c.1785C>T	c.(1783-1785)GTC>GTT	p.V595V	IFT122_uc003eml.2_Silent_p.V646V|IFT122_uc003emn.2_Silent_p.V536V|IFT122_uc003emo.2_Silent_p.V484V|IFT122_uc003emp.2_Silent_p.V445V|IFT122_uc010htc.2_Silent_p.V587V|IFT122_uc011bky.1_Silent_p.V386V|IFT122_uc003emq.2_Silent_p.V435V|IFT122_uc003emr.2_Silent_p.V386V|IFT122_uc011bla.1_Silent_p.V386V|IFT122_uc011bkx.1_Silent_p.V435V|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Silent_p.V74V	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	595					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						GCTTTGTGGTCGGCTACAATG	0.582													12	0					0	0	0.00244969	0	0
FAIM	55179	broad.mit.edu	37	3	138351881	138351881	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:138351881T>C	uc003esr.2	+	5	760	c.500T>C	c.(499-501)CTC>CCC	p.L167P	FAIM_uc003esp.2_Missense_Mutation_p.L201P|FAIM_uc003esq.2_Missense_Mutation_p.L189P|FAIM_uc003ess.2_Missense_Mutation_p.L167P	NM_001033032	NP_001028204	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule isoform c	167					apoptosis	cytoplasm					0						ATTCATACTCTCATTGTGGAT	0.363													157	47					0	0	0.000781405	0	0
PRR23A	729627	broad.mit.edu	37	3	138724486	138724486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:138724486C>T	uc011bms.1	-	1	625	c.625G>A	c.(625-627)GGA>AGA	p.G209R		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	209	Pro-rich.										0						GGAGAGTGTCCCTCTGAACTG	0.652													5	4					0	0	0.000602214	0	0
CLSTN2	64084	broad.mit.edu	37	3	139894811	139894811	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:139894811G>A	uc003etn.2	+	2	318	c.128G>A	c.(127-129)TGG>TAG	p.W43*	CLSTN2_uc003etm.2_Nonsense_Mutation_p.W43*	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	43	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CACAAGCCATGGATCGAGACT	0.353										HNSCC(16;0.037)			10	4					0	0	0.00136819	0	0
CLSTN2	64084	broad.mit.edu	37	3	140282952	140282952	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:140282952G>A	uc003etn.2	+	16	2822	c.2632G>A	c.(2632-2634)GAT>AAT	p.D878N		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	878	Cytoplasmic (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGACTGGGACGATTCTGCGCT	0.582										HNSCC(16;0.037)			42	23					0	0	0.000781405	0	0
TRPC1	7220	broad.mit.edu	37	3	142503749	142503749	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:142503749C>T	uc003evc.2	+	7	1300	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I	TRPC1_uc003evb.2_Silent_p.I354I	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	388	Helical; (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TGAAATTTATCATTCATGGAG	0.373													14	17					0	0	0.00244969	0	0
SLC9A9	285195	broad.mit.edu	37	3	143550953	143550953	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:143550953T>A	uc003evn.2	-	2	468	c.286A>T	c.(286-288)AAT>TAT	p.N96Y	SLC9A9_uc011bnk.1_Intron	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	96					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TCAGTGATATTAACCAGCAGA	0.348													20	21					0	0	0.00188189	0	0
CPB1	1360	broad.mit.edu	37	3	148577634	148577634	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:148577634T>G	uc003ewl.2	+	11	1122	c.1099T>G	c.(1099-1101)TAT>GAT	p.Y367D		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	367					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CGACTGGGCTTATGACCAAGG	0.453													41	54					0	0	0.00222228	0	0
IGSF10	285313	broad.mit.edu	37	3	151160963	151160963	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:151160963A>G	uc011bod.1	-	5	5772	c.5772T>C	c.(5770-5772)GGT>GGC	p.G1924G	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1924	Ig-like C2-type 5.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCGCTCCGAACCAGTGGAAC	0.443													28	57					0	0	0.0024448	0	0
PLCH1	23007	broad.mit.edu	37	3	155200384	155200384	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:155200384G>A	uc011bok.1	-	23	3732	c.3455C>T	c.(3454-3456)TCT>TTT	p.S1152F	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.S1114F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1152					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTCTGACAAAGAAAAGGATGT	0.443													22	30					0	0	0.00278032	0	0
PLCH1	23007	broad.mit.edu	37	3	155282849	155282849	+	Silent	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:155282849T>C	uc011bok.1	-	7	1165	c.888A>G	c.(886-888)GAA>GAG	p.E296E	PLCH1_uc011boj.1_Silent_p.E296E|PLCH1_uc011bol.1_Silent_p.E278E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	296					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CTTGGTACACTTCATGGTGCA	0.458													8	24					0	0	0.000442599	0	0
PLCH1	23007	broad.mit.edu	37	3	155282851	155282851	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:155282851C>T	uc011bok.1	-	7	1163	c.886G>A	c.(886-888)GAA>AAA	p.E296K	PLCH1_uc011boj.1_Missense_Mutation_p.E296K|PLCH1_uc011bol.1_Missense_Mutation_p.E278K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	296					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGGTACACTTCATGGTGCAAT	0.448													7	24					0	0	0.000274275	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605601	159605602	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:159605601_159605602AG>TA	uc003fcs.1	+	5	1167_1168	c.1101_1102AG>TA	c.(1099-1104)GAAGCC>GATACC	p.367_368EA>DT	SCHIP1_uc003fcq.1_Missense_Mutation_p.443_444EA>DT|SCHIP1_uc003fcr.1_Missense_Mutation_p.356_357EA>DT|SCHIP1_uc003fct.1_Missense_Mutation_p.354_355EA>DT|SCHIP1_uc010hvz.1_Missense_Mutation_p.327_328EA>DT|SCHIP1_uc003fcu.1_Missense_Mutation_p.124_125EA>DT|SCHIP1_uc003fcv.1_Missense_Mutation_p.140_141EA>DT	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	367_368						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			TGCAAGCTGAAGCCAAAATGGC	0.446													49	72					0	0	6.4e-05	0	0
SI	6476	broad.mit.edu	37	3	164773008	164773008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:164773008C>T	uc003fei.2	-	13	1548	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	496	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATTGCACTTCTTGATGGAAA	0.348										HNSCC(35;0.089)			8	23					0	0	0.000274275	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906436	164906436	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:164906436G>A	uc003fej.3	-	2	2627	c.2183C>T	c.(2182-2184)TCC>TTC	p.S728F	SLITRK3_uc003fek.2_Missense_Mutation_p.S728F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	728	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CTCTGGAGAGGAAAGAGTTGG	0.448										HNSCC(40;0.11)			13	25					0	0	0.000308642	0	0
GOLIM4	27333	broad.mit.edu	37	3	167745545	167745545	+	Silent	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:167745545G>T	uc003ffe.2	-	12	1938	c.1594C>A	c.(1594-1596)CGA>AGA	p.R532R	GOLIM4_uc011bpe.1_Silent_p.R533R|GOLIM4_uc011bpf.1_Silent_p.R505R|GOLIM4_uc011bpg.1_Silent_p.R504R	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	532	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TCGGCTTCTCGGGGTCCTTGT	0.468													8	143					0.000978159	0.00437474	0.000978159	1	0
MECOM	2122	broad.mit.edu	37	3	168833494	168833494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:168833494C>T	uc003ffi.3	-	7	1871	c.1602G>A	c.(1600-1602)ATG>ATA	p.M534I	MECOM_uc010hwk.1_Missense_Mutation_p.M557I|MECOM_uc003ffj.3_Missense_Mutation_p.M599I|MECOM_uc011bpi.1_Missense_Mutation_p.M535I|MECOM_uc003ffn.3_Missense_Mutation_p.M534I|MECOM_uc003ffk.2_Missense_Mutation_p.M534I|MECOM_uc003ffl.2_Missense_Mutation_p.M694I|MECOM_uc011bpj.1_Missense_Mutation_p.M722I|MECOM_uc011bpk.1_Missense_Mutation_p.M524I|MECOM_uc010hwn.2_Missense_Mutation_p.M722I	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	534					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATTGGGGTTCCATTTTCAAAG	0.458													8	18					0	0	0.000157383	0	0
CLDN11	5010	broad.mit.edu	37	3	170150515	170150515	+	Missense_Mutation	SNP	C	T	T	rs144303681		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:170150515C>T	uc003fgx.2	+	3	797	c.595C>T	c.(595-597)CCG>TCG	p.P199S	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Missense_Mutation_p.P115S	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	199	Cytoplasmic (Potential).			RFYYTAGSSSPTHAKSAHV -> VSTTLRALAPRLMRRVPT YKRAARLPTEVL (in Ref. 1; AAC25187).	calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			CTCTAGCTCCCCGACTCATGC	0.607													28	35					0	0	0.0024448	0	0
KLHL6	89857	broad.mit.edu	37	3	183217613	183217613	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:183217613G>A	uc003flr.2	-	4	970	c.912C>T	c.(910-912)ATC>ATT	p.I304I	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Intron	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	304										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GTTCCGAAATGATCTGGAAAT	0.358													7	10					0	0	0.00198382	0	0
EPHB3	2049	broad.mit.edu	37	3	184298565	184298565	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:184298565C>T	uc003foz.2	+	13	2874	c.2437C>T	c.(2437-2439)CGG>TGG	p.R813W		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	813	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			CATAGCCTATCGGAAGTTCAC	0.607													18	23					0	0	0.00074312	0	0
TP63	8626	broad.mit.edu	37	3	189526244	189526244	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:189526244G>A	uc003fry.2	+	4	597	c.508G>A	c.(508-510)GAC>AAC	p.D170N	TP63_uc003frx.2_Missense_Mutation_p.D170N|TP63_uc003frz.2_Missense_Mutation_p.D170N|TP63_uc010hzc.1_Missense_Mutation_p.D170N|TP63_uc003fsa.2_Missense_Mutation_p.D76N|TP63_uc003fsb.2_Missense_Mutation_p.D76N|TP63_uc003fsc.2_Missense_Mutation_p.D76N|TP63_uc003fsd.2_Missense_Mutation_p.D76N|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Missense_Mutation_p.D51N	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	170					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.D170E(1)		skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CTCCAACACCGACTACCCAGG	0.647									Hay-Wells_syndrome	HNSCC(45;0.13)			17	19					0	0	0.000422831	0	0
CLDN16	10686	broad.mit.edu	37	3	190122569	190122569	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:190122569G>A	uc003fsi.2	+	3	514	c.446G>A	c.(445-447)CGA>CAA	p.R149Q	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	149	Extracellular (Potential).		R -> L (in HOMG3).		calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		GTGGTAACTCGAGCGTTGATG	0.448													35	62					0	0	0.00170553	0	0
ATP13A4	84239	broad.mit.edu	37	3	193207550	193207550	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:193207550G>A	uc003ftd.2	-	7	815	c.707C>T	c.(706-708)TCC>TTC	p.S236F	ATP13A4_uc003fte.1_Missense_Mutation_p.S236F|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	236	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CAAAGATATGGAAATTATGGA	0.294													44	92					0	0	0.000781405	0	0
GP5	2814	broad.mit.edu	37	3	194118498	194118498	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:194118498G>A	uc003ftv.1	-	2	545	c.514C>T	c.(514-516)CTG>TTG	p.L172L		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	172	Extracellular (Potential).|LRR 5.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		AACAACTTCAGGTTCTCCAGA	0.512													27	43					0	0	0.000720815	0	0
MUC4	4585	broad.mit.edu	37	3	195515738	195515738	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:195515738A>G	uc011bto.1	-	2	3173	c.2713T>C	c.(2713-2715)TCC>CCC	p.S905P	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.S787P	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	910	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GCCATCCGGGAAATGGCGGCT	0.602													14	19					0	0	0.00074312	0	0
RNF168	165918	broad.mit.edu	37	3	196199338	196199338	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:196199338G>A	uc003fwq.2	-	6	1606	c.1068C>T	c.(1066-1068)GCC>GCT	p.A356A	RNF168_uc010iah.2_Silent_p.A189A|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	356					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		CTGATGTGGGGGCGCACCCAC	0.453													70	68					0	0	0.000781405	0	0
ZNF876P	642280	broad.mit.edu	37	4	248262	248262	+	RNA	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:248262C>T	uc010iba.2	+	2		c.1096C>T				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						GGTCCTCACACCTTACTGAAC	0.368													7	8					0	0	0.00198382	0	0
PDE6B	5158	broad.mit.edu	37	4	658000	658000	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:658000G>A	uc003gap.2	+	17	2172	c.2119G>A	c.(2119-2121)GAG>AAG	p.E707K	PDE6B_uc003gao.3_Missense_Mutation_p.E707K|PDE6B_uc011buy.1_Missense_Mutation_p.E428K|PDE6B_uc011buz.1_Missense_Mutation_p.E139K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	707					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GACCCGGAAGGAGATCGTCAT	0.617													33	31					0	0	0.000692331	0	0
IDUA	3425	broad.mit.edu	37	4	995528	995528	+	Silent	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:995528G>T	uc003gby.2	+	6	739	c.651G>T	c.(649-651)CGG>CGT	p.R217R	IDUA_uc003gbz.2_RNA|IDUA_uc003gca.2_Silent_p.R170R	NM_000203	NP_000194	P35475	IDUA_HUMAN	alpha-L-iduronidase precursor	217					disaccharide metabolic process	lysosome	cation binding|L-iduronidase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)		Laronidase(DB00090)	CCGCCCTGCGGCTGGGAGGCC	0.711													6	9					1.06961e-07	4.82226e-07	0.000157383	1	0
KIAA1530	57654	broad.mit.edu	37	4	1369270	1369270	+	Silent	SNP	C	T	T	rs143426578		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:1369270C>T	uc003gde.3	+	9	1854	c.1407C>T	c.(1405-1407)GAC>GAT	p.D469D	KIAA1530_uc010ibv.2_Silent_p.D20D	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	469											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			AGCTCCGGGACCACTTGCCTC	0.672													15	34					0	0	0.000422831	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6043934	6043934	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:6043934C>T	uc010idb.1	-	17	2535	c.2049G>A	c.(2047-2049)GGG>GGA	p.G683G	JAKMIP1_uc010idc.1_Silent_p.G498G|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGGCCTCGGTCCCCTCTATTT	0.557													33	44					0	0	0.000692331	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6107569	6107569	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:6107569C>T	uc003giu.3	-	3	531	c.255G>A	c.(253-255)CAG>CAA	p.Q85Q	JAKMIP1_uc010idb.1_Silent_p.Q85Q|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Silent_p.Q85Q|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Silent_p.Q85Q|JAKMIP1_uc010ide.2_Silent_p.Q85Q	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	85	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGCGCAGCGCCTGCAGCTCCT	0.677													19	21					0	0	0.00188189	0	0
HTRA3	94031	broad.mit.edu	37	4	8288468	8288468	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:8288468C>T	uc003gla.2	+	3	870	c.666C>T	c.(664-666)ATC>ATT	p.I222I	HTRA3_uc003gkz.2_Silent_p.I222I	NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	222	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						TCAAAGACATCGACAAGAAGT	0.612													22	26					0	0	0.00229938	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401533	11401533	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:11401533T>A	uc003gmq.2	-	2	420	c.97A>T	c.(97-99)AAA>TAA	p.K33*		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	33						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GTCCCCGCTTTCCGCAGAAGC	0.706													6	8					0	0	0.00198382	0	0
SLIT2	9353	broad.mit.edu	37	4	20512168	20512168	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:20512168C>T	uc003gpr.1	+	10	1169	c.965C>T	c.(964-966)CCA>CTA	p.P322L	SLIT2_uc003gps.1_Missense_Mutation_p.P322L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	322	LRR 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCTTTCTCACCATATAAAAAG	0.328													69	83					0	0	0.000781405	0	0
ZCCHC4	29063	broad.mit.edu	37	4	25314443	25314443	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:25314443C>T	uc003grl.3	+	1	48	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_024936	NP_079212	Q9H5U6	ZCHC4_HUMAN	zinc finger, CCHC domain containing 4	4							methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(2)	2		Breast(46;0.0503)				TGGCGGCCTCCAGGAATGGGT	0.662											OREG0016141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	75	106					0	0	0.000781405	0	0
TMEM156	80008	broad.mit.edu	37	4	39000388	39000388	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:39000388G>A	uc003gto.2	-	2	338	c.230C>T	c.(229-231)CCC>CTC	p.P77L	TMEM156_uc010ifj.2_Missense_Mutation_p.P77L	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	77	Extracellular (Potential).					integral to membrane				skin(1)	1						AAAATTGGAGGGATTTAGAAA	0.368													6	15					0	0	0.00198382	0	0
WDR19	57728	broad.mit.edu	37	4	39255580	39255580	+	Silent	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:39255580C>A	uc003gtv.2	+	26	3085	c.2931C>A	c.(2929-2931)TCC>TCA	p.S977S	WDR19_uc011byi.1_Silent_p.S817S|WDR19_uc003gtw.1_Silent_p.S574S	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	977	TPR 5.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						TTGTCATGTCCAAATGCAACA	0.353													7	128					0.000157383	0.000705934	0.000157383	1	0
APBB2	323	broad.mit.edu	37	4	40832494	40832494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:40832494C>T	uc003gvl.2	-	13	2257	c.1627G>A	c.(1627-1629)GAG>AAG	p.E543K	APBB2_uc010ifu.2_Missense_Mutation_p.E115K|APBB2_uc003gvm.2_Missense_Mutation_p.E522K|APBB2_uc003gvn.2_Missense_Mutation_p.E544K|APBB2_uc003gvk.2_5'UTR	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	543	PID 1.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GAGCAGATCTCGTGGAGACTT	0.468													18	21					0	0	0.00278032	0	0
SHISA3	152573	broad.mit.edu	37	4	42403133	42403133	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:42403133G>A	uc003gwp.2	+	2	600	c.382G>A	c.(382-384)GAG>AAG	p.E128K		NM_001080505	NP_001073974	A0PJX4	SHSA3_HUMAN	shisa homolog 3 precursor	128	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|skin(1)	2						GAGACCCAAGGAGCCCTCGCA	0.572													72	102					0	0	0.000781405	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095234	69095234	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:69095234C>T	uc003hdw.3	-	8	823	c.687G>A	c.(685-687)AAG>AAA	p.K229K		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	229	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AATTATTTTTCCTAGAGGACA	0.323													11	15					0	0	0.000978159	0	0
SULT1B1	27284	broad.mit.edu	37	4	70615468	70615468	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:70615468G>A	uc003hen.2	-	4	644	c.346C>T	c.(346-348)CCT>TCT	p.P116S		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	116					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						AAAGATTTAGGAAGAAGATCA	0.368													27	66					0	0	0.00058488	0	0
SCD5	79966	broad.mit.edu	37	4	83557909	83557909	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:83557909C>T	uc003hna.2	-	4	957	c.637G>A	c.(637-639)GGA>AGA	p.G213R		NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	213	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				AGACTCTCTCCCCAGATGTAC	0.532													13	16					0	0	0.00185496	0	0
HELQ	113510	broad.mit.edu	37	4	84369967	84369967	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:84369967A>G	uc003hom.2	-	3	1339	c.1160T>C	c.(1159-1161)ATT>ACT	p.I387T	HELQ_uc010ikb.2_Missense_Mutation_p.I387T|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA|HELQ_uc003hon.1_Missense_Mutation_p.I281T	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	387	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						ATATGGAAGAATCATTAAAAC	0.353								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					36	60					0	0	0.00148497	0	0
MAPK10	5602	broad.mit.edu	37	4	87023060	87023060	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:87023060C>T	uc003hpq.2	-	6	618	c.551G>A	c.(550-552)GGA>GAA	p.G184E	MAPK10_uc010ikg.2_Missense_Mutation_p.G146E|MAPK10_uc003hpr.2_Missense_Mutation_p.G146E|MAPK10_uc003hps.2_Missense_Mutation_p.G184E|MAPK10_uc003hpt.2_Missense_Mutation_p.G184E|MAPK10_uc003hpu.2_Missense_Mutation_p.G184E|MAPK10_uc003hpv.2_Missense_Mutation_p.G39E|MAPK10_uc010ikh.1_RNA|MAPK10_uc003hpn.2_5'Flank|MAPK10_uc003hpo.2_Missense_Mutation_p.G39E|MAPK10_uc011ccw.1_Missense_Mutation_p.G70E|MAPK10_uc003hpp.2_Missense_Mutation_p.G39E	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	184	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		GTGAATAATTCCAGCAGAATG	0.403													17	20					0	0	0.000958276	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95201808	95201808	+	Silent	SNP	C	T	T	rs143809731		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:95201808C>T	uc003htc.3	+	20	2739	c.2484C>T	c.(2482-2484)TTC>TTT	p.F828F	SMARCAD1_uc003htb.3_Silent_p.F830F|SMARCAD1_uc003htd.3_Silent_p.F830F|SMARCAD1_uc010ila.2_Silent_p.F693F|SMARCAD1_uc011cdw.1_Silent_p.F398F	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	828					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TGACAGACTTCGAACTACATG	0.343													53	67					0	0	0.000781405	0	0
EGF	1950	broad.mit.edu	37	4	110880567	110880567	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:110880567T>A	uc003hzy.3	+	6	1492	c.1040T>A	c.(1039-1041)CTA>CAA	p.L347Q	EGF_uc011cfu.1_Intron|EGF_uc011cfv.1_Missense_Mutation_p.L347Q	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	347	EGF-like 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GGATACGCCCTAAGTCGAGAC	0.512													11	12					0	0	0.00136819	0	0
NEUROG2	63973	broad.mit.edu	37	4	113436414	113436414	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:113436414C>T	uc003ias.2	-	2	545	c.218G>A	c.(217-219)GGC>GAC	p.G73D		NM_024019	NP_076924	Q9H2A3	NGN2_HUMAN	neurogenin 2	73					positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent	nucleus	E-box binding			skin(2)|central_nervous_system(1)	3		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.00168)		GGGCCGGCAGCCCTCCGCACC	0.448													5	4					0	0	0.000602214	0	0
NDST3	9348	broad.mit.edu	37	4	119059315	119059315	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:119059315T>A	uc003ibx.2	+	5	1734	c.1331T>A	c.(1330-1332)ATT>AAT	p.I444N	NDST3_uc011cgf.1_Missense_Mutation_p.I363N	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	444	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GTCTGGAATATTAAAATCACC	0.493													23	15					0	0	0.00229938	0	0
NDST3	9348	broad.mit.edu	37	4	119064801	119064801	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:119064801C>T	uc003ibx.2	+	6	1904	c.1501C>T	c.(1501-1503)CAA>TAA	p.Q501*	NDST3_uc011cgf.1_Nonsense_Mutation_p.Q420*	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	501	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TAAGAGTATCCAAGGAGGAGA	0.418													27	19					0	0	0.00106085	0	0
SEC24D	9871	broad.mit.edu	37	4	119661857	119661857	+	Silent	SNP	G	A	A	rs140046192	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:119661857G>A	uc003ici.3	-	17	2471	c.2199C>T	c.(2197-2199)CAC>CAT	p.H733H	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Silent_p.H734H|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	733					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						GTTTGTCATCGTGCTTGAACT	0.453													21	41					0	0	0.000720815	0	0
IL2	3558	broad.mit.edu	37	4	123372940	123372940	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:123372940G>A	uc003ier.2	-	4	484	c.429C>T	c.(427-429)ACC>ACT	p.T143T		NM_000586	NP_000577	P60568	IL2_HUMAN	interleukin 2 precursor	143					anti-apoptosis|cell adhesion|cell-cell signaling|immune response|natural killer cell activation|negative regulation of B cell apoptosis|positive regulation of activated T cell proliferation|positive regulation of B cell proliferation|positive regulation of cell growth|positive regulation of interleukin-17 production|positive regulation of tyrosine phosphorylation of Stat5 protein|T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-2 receptor binding|kinase activator activity			skin(1)	1				LUSC - Lung squamous cell carcinoma(721;0.185)		TTTGACAAAAGGTAATCCATC	0.294			T	TNFRSF17	intestinal T-cell lymphoma								16	20					0	0	0.00229938	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590623	125590623	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:125590623C>T	uc003ifg.3	-	3	4075	c.3809G>A	c.(3808-3810)GGG>GAG	p.G1270E	ANKRD50_uc011cgo.1_Missense_Mutation_p.G1091E|ANKRD50_uc010inw.2_Missense_Mutation_p.G1270E	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1270	Ser-rich.									central_nervous_system(1)	1						TGATTTCCCCCCTTTACTTGC	0.398													16	26					0	0	0.000422831	0	0
MAML3	55534	broad.mit.edu	37	4	140810561	140810561	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:140810561C>A	uc003ihz.1	-	3	2769	c.2017G>T	c.(2017-2019)GGA>TGA	p.G673*	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	673	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					TTCATCACTCCTTTCTGCTTC	0.488													7	79					0.00198382	0.00883401	0.00198382	1	0
FBXW7	55294	broad.mit.edu	37	4	153268087	153268087	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:153268087A>G	uc003ims.2	-	4	870	c.721T>C	c.(721-723)TTT>CTT	p.F241L	FBXW7_uc011cii.1_Missense_Mutation_p.F241L|FBXW7_uc003imt.2_Missense_Mutation_p.F241L|FBXW7_uc011cih.1_Missense_Mutation_p.F65L|FBXW7_uc003imq.2_Missense_Mutation_p.F161L|FBXW7_uc003imr.2_Missense_Mutation_p.F123L	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	241					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GTCACCTGAAACATTTTTAGC	0.373			Mis|N|D|F		colorectal|endometrial|T-ALL								15	29					0	0	0.000422831	0	0
DCHS2	54798	broad.mit.edu	37	4	155312327	155312327	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:155312327C>T	uc003inw.2	-	1	123	c.123G>A	c.(121-123)GTG>GTA	p.V41V	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	41					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCTGAGATTTCACAATGGAAT	0.264													4	20					0	0	0.00024832	0	0
FGA	2243	broad.mit.edu	37	4	155507586	155507586	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:155507586C>T	uc003iod.1	-	5	1053	c.995G>A	c.(994-996)GGA>GAA	p.G332E	FGA_uc003ioe.1_Missense_Mutation_p.G332E|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	332	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GTTCCAGCTTCCAGTACTTCC	0.567													10	20					0	0	0.00185496	0	0
RBM46	166863	broad.mit.edu	37	4	155719262	155719262	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:155719262G>A	uc003ioo.2	+	3	624	c.451G>A	c.(451-453)GAA>AAA	p.E151K	RBM46_uc011cim.1_Missense_Mutation_p.E151K|RBM46_uc003iop.1_Missense_Mutation_p.E151K	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	151	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				TATTCCCAAGGAAAAGAAGAA	0.328													32	50					0	0	0.00058488	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634535	156634535	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:156634535T>A	uc003iov.2	+	8	1908	c.1372T>A	c.(1372-1374)TTT>ATT	p.F458I	GUCY1A3_uc010iqc.2_Missense_Mutation_p.F458I|GUCY1A3_uc003iow.2_Missense_Mutation_p.F458I|GUCY1A3_uc010iqd.2_Missense_Mutation_p.F457I|GUCY1A3_uc003iox.2_Missense_Mutation_p.F458I|GUCY1A3_uc003ioz.2_Missense_Mutation_p.F223I|GUCY1A3_uc003ioy.2_Missense_Mutation_p.F458I|GUCY1A3_uc010iqe.2_Missense_Mutation_p.F223I|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.F458I	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	458					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GTGCTCCATATTTCCCTGTGA	0.522													9	8					0	0	0.000978159	0	0
GRIA2	2891	broad.mit.edu	37	4	158282245	158282245	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:158282245G>A	uc003ipm.3	+	14	2834	c.2375G>A	c.(2374-2376)GGA>GAA	p.G792E	GRIA2_uc011cit.1_Intron|GRIA2_uc003ipl.3_Intron|GRIA2_uc003ipk.3_Intron|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.G102E|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Intron|GRIA2_uc011ciy.1_Intron|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	792	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TACGACAAAGGAGAGTGCGGC	0.448													4	7					0	0	0.00024832	0	0
NPY5R	4889	broad.mit.edu	37	4	164272412	164272412	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:164272412C>T	uc003iqn.2	+	4	1169	c.987C>T	c.(985-987)TTC>TTT	p.F329F		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	329	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				CCAGTAAGTTCATACCAGGGG	0.393													15	24					0	0	0.000308642	0	0
TLL1	7092	broad.mit.edu	37	4	166924680	166924680	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:166924680G>A	uc003irh.1	+	6	1417	c.770G>A	c.(769-771)CGA>CAA	p.R257Q	TLL1_uc011cjn.1_Missense_Mutation_p.R257Q|TLL1_uc011cjo.1_Missense_Mutation_p.R81Q	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	257	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGACCAGATCGAGATAACCAC	0.408													10	14					0	0	0.000442599	0	0
TLL1	7092	broad.mit.edu	37	4	166935619	166935619	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:166935619C>G	uc003irh.1	+	8	1596	c.949C>G	c.(949-951)CGT>GGT	p.R317G	TLL1_uc011cjn.1_Missense_Mutation_p.R317G|TLL1_uc011cjo.1_Missense_Mutation_p.R141G	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	317	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding	p.R317C(1)		skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCTCCCCTCCCGTGATGATAA	0.438													3	53					0	0	0.00024832	0	0
DDX60	55601	broad.mit.edu	37	4	169204758	169204758	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:169204758C>T	uc003irp.2	-	13	1854	c.1562_splice	c.e13-1	p.E521_splice		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60								ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CTAGATTTTTCTGAAAAAGAA	0.308													4	21					0	0	0.00024832	0	0
GLRA3	8001	broad.mit.edu	37	4	175580303	175580303	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:175580303G>A	uc003ity.1	-	8	1476	c.973C>T	c.(973-975)CTT>TTT	p.L325F	GLRA3_uc003itz.1_Missense_Mutation_p.L325F	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	325	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	AACACAAAAAGGAGGCATACT	0.358													8	12					0	0	0.000157383	0	0
GLRA3	8001	broad.mit.edu	37	4	175649849	175649849	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:175649849C>T	uc003ity.1	-	4	771	c.268G>A	c.(268-270)GAT>AAT	p.D90N	GLRA3_uc003itz.1_Missense_Mutation_p.D90N	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	90	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	ACTCTGTAATCCTATGATAAA	0.328													11	25					0	0	0.00136819	0	0
ADAM29	11086	broad.mit.edu	37	4	175897470	175897470	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:175897470C>T	uc003iuc.2	+	5	1464	c.794C>T	c.(793-795)TCT>TTT	p.S265F	ADAM29_uc003iud.2_Missense_Mutation_p.S265F|ADAM29_uc010irr.2_Missense_Mutation_p.S265F|ADAM29_uc011cki.1_Missense_Mutation_p.S265F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	265	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GTAAGGAAATCTGTGCACCTG	0.408													21	35					0	0	0.00229938	0	0
GPM6A	2823	broad.mit.edu	37	4	176572994	176572994	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:176572994G>A	uc003iuf.2	-	4	1336	c.532C>T	c.(532-534)CGT>TGT	p.R178C	GPM6A_uc011ckj.1_Missense_Mutation_p.R171C|GPM6A_uc003iug.2_Missense_Mutation_p.R178C|GPM6A_uc003iuh.2_Missense_Mutation_p.R167C	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	178	Extracellular (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		CCAAACTGACGAAGGTCCAAG	0.433													25	30					0	0	0.00178596	0	0
WDR17	116966	broad.mit.edu	37	4	177041242	177041242	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:177041242C>T	uc003iuj.2	+	5	760	c.604C>T	c.(604-606)CAT>TAT	p.H202Y	WDR17_uc003iuk.2_Missense_Mutation_p.H178Y|WDR17_uc003ium.3_Missense_Mutation_p.H178Y|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	202	WD 3.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATCAATTTTTCATCCAGGTAA	0.264													31	68					0	0	0.00209593	0	0
ODZ3	55714	broad.mit.edu	37	4	183600989	183600989	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:183600989G>A	uc003ivd.1	+	7	1534	c.1497G>A	c.(1495-1497)GGG>GGA	p.G499G	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	499	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATAATGATGGGAAAAATGCAG	0.448													9	16					0	0	0.000274275	0	0
DCTD	1635	broad.mit.edu	37	4	183836694	183836694	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:183836694C>T	uc003ivf.2	-	2	202	c.28G>A	c.(28-30)GAC>AAC	p.D10N	DCTD_uc003ivg.2_Missense_Mutation_p.D21N|DCTD_uc010irw.2_5'UTR|DCTD_uc003ivh.2_5'UTR	NM_001921	NP_001912	P32321	DCTD_HUMAN	dCMP deaminase isoform b	10					nucleotide biosynthetic process|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide metabolic process	cytosol	dCMP deaminase activity|zinc ion binding				0		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00666)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.202)		all cancers(43;1.65e-24)|Epithelial(43;3.44e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.39e-10)|Colorectal(24;4.69e-07)|COAD - Colon adenocarcinoma(29;7.07e-05)|STAD - Stomach adenocarcinoma(60;0.000118)|GBM - Glioblastoma multiforme(59;0.000472)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.0419)		AAATAGTCGTCCCGTTTCTTG	0.408													70	128					0	0	0.000781405	0	0
SORBS2	8470	broad.mit.edu	37	4	186545620	186545620	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:186545620G>A	uc003iyl.2	-	13	1809	c.951C>T	c.(949-951)TCC>TCT	p.S317S	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.S417S|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.S221S|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.S431S|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	317						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		AACTGCAAAGGGATGGACATA	0.478													29	39					0	0	0.0024448	0	0
KLKB1	3818	broad.mit.edu	37	4	187178468	187178469	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:187178468_187178469CC>AA	uc003iyy.2	+	14	1745_1746	c.1674_1675CC>AA	c.(1672-1677)ACCCAA>ACAAAA	p.Q559K	KLKB1_uc011clc.1_Missense_Mutation_p.Q357K|KLKB1_uc011cld.1_Intron	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	559	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		ATAAAATAACCCAACGGATGGT	0.347													9	259					0	0	6.4e-05	0	0
TRIML2	205860	broad.mit.edu	37	4	189020237	189020237	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:189020237G>A	uc003izl.2	-	4	459	c.423C>T	c.(421-423)ATC>ATT	p.I141I	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.I191I|TRIML2_uc011clf.1_Silent_p.I191I	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	141	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CAAGCTCCACGATGAGCTTTA	0.478													35	58					0	0	0.000814825	0	0
SDHA	6389	broad.mit.edu	37	5	235406	235406	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:235406C>T	uc003jao.3	+	9	1327	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	SDHA_uc003jan.2_Silent_p.P404P|SDHA_uc011clv.1_Silent_p.P404P|SDHA_uc011clw.1_Silent_p.P356P|SDHA_uc003jap.3_Silent_p.P404P|SDHA_uc003jaq.3_Silent_p.P179P|SDHA_uc003jar.3_Intron	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	404					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	CTGTCCTCCCCACCGTGCATT	0.617									Familial_Paragangliomas				18	28					0	0	0.00121646	0	0
CEP72	55722	broad.mit.edu	37	5	639225	639225	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:639225G>A	uc003jbf.2	+	8	1300	c.1228G>A	c.(1228-1230)GCT>ACT	p.A410T	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	410					G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			GTCACACTCGGCTCTACCCGG	0.642													18	30					0	0	0.000566183	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5146401	5146401	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:5146401C>T	uc003jdl.2	+	3	472	c.334C>T	c.(334-336)CTG>TTG	p.L112L	ADAMTS16_uc003jdk.1_Silent_p.L112L|ADAMTS16_uc003jdj.1_Silent_p.L112L	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	112					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CCACATGGATCTGAGGACTTC	0.552													23	44					0	0	0.000720815	0	0
DNAH5	1767	broad.mit.edu	37	5	13753464	13753464	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:13753464C>T	uc003jfd.2	-	63	10792	c.10750G>A	c.(10750-10752)GAT>AAT	p.D3584N	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3584	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACAAGTCATCATTTGGCAGA	0.388									Kartagener_syndrome				12	29					0	0	0.000978159	0	0
DNAH5	1767	broad.mit.edu	37	5	13776791	13776791	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:13776791C>T	uc003jfd.2	-	55	9172	c.9130G>A	c.(9130-9132)GAA>AAA	p.E3044K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3044	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATCAATTTCATCTCGAGCA	0.393									Kartagener_syndrome				12	22					0	0	0.00136819	0	0
CDH6	1004	broad.mit.edu	37	5	31294328	31294328	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:31294328T>A	uc003jhe.1	+	3	814	c.488T>A	c.(487-489)GTT>GAT	p.V163D	CDH6_uc003jhd.1_Missense_Mutation_p.V163D	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	163	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACCAAGGAGGTTTACACAGCC	0.478													23	41					0	0	0.000878237	0	0
PDZD2	23037	broad.mit.edu	37	5	32061115	32061115	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:32061115G>A	uc003jhl.2	+	14	2714	c.2326G>A	c.(2326-2328)GAT>AAT	p.D776N	PDZD2_uc003jhm.2_Missense_Mutation_p.D776N|PDZD2_uc011cnx.1_Missense_Mutation_p.D602N	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	776	PDZ 4.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TAGCCGCGGGGATCAAATCCT	0.493													26	32					0	0	0.001512	0	0
Unknown	0	broad.mit.edu	37	5	33162472	33162472	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:33162472G>A	uc003jhx.2	+	1		c.207G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTGGACGTGGGGGAATTTCTC	0.527													11	5					0	0	0.000673444	0	0
NIPBL	25836	broad.mit.edu	37	5	37019442	37019442	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:37019442A>T	uc003jkl.3	+	25	5449	c.4950A>T	c.(4948-4950)CAA>CAT	p.Q1650H	NIPBL_uc003jkk.3_Missense_Mutation_p.Q1650H	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1650					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AAATCCAACAATTACAAAAAG	0.338													22	39					0	0	0.00106085	0	0
C7	730	broad.mit.edu	37	5	40979906	40979906	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:40979906C>T	uc003jmh.2	+	17	2359	c.2245C>T	c.(2245-2247)CAC>TAC	p.H749Y	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	749	Complement control factor I module 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCATGTTCTCCACTGTCAGGG	0.468													20	27					0	0	0.00121646	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000823	41000823	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:41000823G>A	uc003jmj.3	-	38	4797	c.4307C>T	c.(4306-4308)TCA>TTA	p.S1436L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.S991L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1436							binding			ovary(6)|central_nervous_system(2)	8						CAGAAGGAATGAAATCAGGCT	0.473													5	9					0	0	0.00116845	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41009411	41009411	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:41009411C>T	uc003jmj.3	-	32	3881	c.3391G>A	c.(3391-3393)GAT>AAT	p.D1131N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D686N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1131	HEAT 12.						binding			ovary(6)|central_nervous_system(2)	8						GCGATGTCATCTTCTAACTCA	0.502													21	31					0	0	0.00278032	0	0
GHR	2690	broad.mit.edu	37	5	42718865	42718865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:42718865G>A	uc003jmt.2	+	10	1299	c.1256G>A	c.(1255-1257)GGG>GAG	p.G419E	GHR_uc011cpq.1_Missense_Mutation_p.G232E	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	419	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGGTTAAAAGGGGAAGCAGAT	0.468													27	26					0	0	0.000720815	0	0
C5orf34	375444	broad.mit.edu	37	5	43488032	43488032	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:43488032C>T	uc003jnz.1	-	13	2016	c.1699G>A	c.(1699-1701)GAA>AAA	p.E567K		NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	567										breast(1)	1	Lung NSC(6;2.07e-05)					TGTATCTTTTCAAGTTCAGAA	0.323													10	11					0	0	0.000442599	0	0
HCN1	348980	broad.mit.edu	37	5	45262086	45262086	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:45262086T>A	uc003jok.2	-	8	2635	c.2610A>T	c.(2608-2610)GAA>GAT	p.E870D		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	870	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTGAGGAAGATTCTCTTGGAA	0.527													58	71					0	0	0.000781405	0	0
HCN1	348980	broad.mit.edu	37	5	45262144	45262144	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:45262144G>C	uc003jok.2	-	8	2577	c.2552C>G	c.(2551-2553)CCC>CGC	p.P851R		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	851	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TCGGTTCGGGGGGATGGCTCC	0.642													30	36					0	0	0.00178596	0	0
PARP8	79668	broad.mit.edu	37	5	50090706	50090706	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:50090706C>T	uc003jon.3	+	13	1065	c.883C>T	c.(883-885)CCT>TCT	p.P295S	PARP8_uc011cpz.1_Missense_Mutation_p.P187S|PARP8_uc003joo.2_Missense_Mutation_p.P295S|PARP8_uc003jop.2_Missense_Mutation_p.P295S	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	295						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TTATCCTCCCCCTGGTTGTGG	0.463													11	25					0	0	0.000978159	0	0
FST	10468	broad.mit.edu	37	5	52781787	52781787	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:52781787C>T	uc003jpd.2	+	6	986	c.959C>T	c.(958-960)TCG>TTG	p.S320L	FST_uc003jpc.2_3'UTR	NM_013409	NP_037541	P19883	FST_HUMAN	follistatin isoform FST344 precursor	320					hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of follicle-stimulating hormone secretion|negative regulation of transcription from RNA polymerase II promoter|positive regulation of hair follicle development	extracellular region	activin binding|protein binding|signal transducer activity				0		Ovarian(174;1.78e-06)|Lung NSC(810;3.55e-06)|Breast(144;4.08e-05)				CTAGCCATTTCGGAAGACACC	0.448													62	54					0	0	0.000781405	0	0
SNX18	112574	broad.mit.edu	37	5	53814630	53814630	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:53814630C>G	uc003jpj.3	+	1	1038	c.848C>G	c.(847-849)CCC>CGC	p.P283R	SNX18_uc011cqg.1_Missense_Mutation_p.P283R|SNX18_uc003jpi.3_Missense_Mutation_p.P283R	NM_052870	NP_443102	Q96RF0	SNX18_HUMAN	sorting nexin 18 isoform b	283	PX.				cell communication|endocytosis|positive regulation of GTPase activity|protein transport	endomembrane system|endosome membrane|extrinsic to internal side of plasma membrane	phosphatidylinositol binding|protein binding				0		Lung NSC(810;3.46e-05)|Breast(144;0.102)				ATCGACGACCCCACCAAGCAG	0.622													3	29					0	0	0.00024832	0	0
RNF180	285671	broad.mit.edu	37	5	63509416	63509416	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:63509416C>T	uc003jti.2	+	4	373	c.263C>T	c.(262-264)CCT>CTT	p.P88L	RNF180_uc003jth.3_Missense_Mutation_p.P88L|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	88	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		CTGAATTGTCCTTTCTGTGGG	0.423													42	71					0	0	0.000781405	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64569274	64569274	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:64569274C>T	uc003jtp.2	-	12	2327	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_Intron|ADAMTS6_uc003jtr.1_Missense_Mutation_p.E126K	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	505	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CTACACACTTCCTAGGAAAGA	0.438													26	36					0	0	0.00047179	0	0
MAST4	375449	broad.mit.edu	37	5	66398379	66398379	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:66398379C>T	uc003jut.1	+	8	587	c.519C>T	c.(517-519)CCC>CCT	p.P173P	MAST4_uc003jus.2_Silent_p.P173P|MAST4_uc003juu.1_Silent_p.P183P|MAST4_uc011cra.1_Silent_p.P156P|MAST4_uc010ixa.2_RNA|MAST4_uc003juv.2_Silent_p.P168P|MAST4_uc003juw.2_Silent_p.P168P	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	365						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		GACGTTCTCCCGCCTGCTGTG	0.383													33	54					0	0	0.00128727	0	0
CD180	4064	broad.mit.edu	37	5	66479238	66479238	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:66479238C>T	uc003juy.2	-	3	1581	c.1433G>A	c.(1432-1434)GGG>GAG	p.G478E		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	478	Extracellular (Potential).|LRR 16.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		AAAGTGATTCCCTTTTAAGTT	0.463													33	54					0	0	0.00178596	0	0
MAP1B	4131	broad.mit.edu	37	5	71493252	71493252	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:71493252C>T	uc003kbw.3	+	5	4311	c.4070C>T	c.(4069-4071)CCA>CTA	p.P1357L	MAP1B_uc010iyw.1_Missense_Mutation_p.P1374L|MAP1B_uc010iyx.1_Missense_Mutation_p.P1231L|MAP1B_uc010iyy.1_Missense_Mutation_p.P1231L	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1357						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GAAAAACCACCAGCAGTTCCA	0.483													28	39					0	0	0.001512	0	0
HMGCR	3156	broad.mit.edu	37	5	74638496	74638497	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:74638496_74638497GG>TT	uc003kdp.2	+	2	222_223	c.66_67GG>TT	c.(64-69)GTGGGG>GTTTGG	p.G23W	HMGCR_uc011cst.1_Missense_Mutation_p.G43W|HMGCR_uc003kdq.2_Missense_Mutation_p.G23W|HMGCR_uc010izn.1_5'Flank	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	23	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	AAGTCATAGTGGGGACAGTGAC	0.436													14	633					0	0	6.4e-05	0	0
F2RL2	2151	broad.mit.edu	37	5	75913832	75913832	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:75913832C>T	uc003kem.2	-	2	885	c.700G>A	c.(700-702)GAA>AAA	p.E234K	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Missense_Mutation_p.E212K	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	234	Extracellular (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		AGATAATATTCCTGCTTCAGT	0.473													11	8					0	0	0.000978159	0	0
PDE8B	8622	broad.mit.edu	37	5	76645346	76645346	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:76645346C>T	uc003kfa.2	+	8	1024	c.979C>T	c.(979-981)CTT>TTT	p.L327F	PDE8B_uc003kfb.2_Missense_Mutation_p.L307F|PDE8B_uc003kfc.2_Missense_Mutation_p.L327F|PDE8B_uc003kfd.2_Intron|PDE8B_uc003kfe.2_Intron	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	327	PAS.				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CCGGGCAGACCTTCTCGACAC	0.493													47	75					0	0	0.000781405	0	0
SCAMP1	9522	broad.mit.edu	37	5	77755108	77755108	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:77755108C>T	uc003kfl.2	+	10	932	c.775C>T	c.(775-777)CCT>TCT	p.P259S	SCAMP1_uc010jaa.2_RNA|SCAMP1_uc011ctc.1_RNA|SCAMP1_uc011ctd.1_RNA|SCAMP1_uc003kfm.2_RNA|SCAMP1_uc003kfn.2_5'UTR	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	259	Lumenal (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		CCAAAATATTCCTGTTGGAAT	0.308													11	12					0	0	0.000422831	0	0
SERINC5	256987	broad.mit.edu	37	5	79446751	79446751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:79446751G>A	uc003kgj.2	-	9	1136	c.1007C>T	c.(1006-1008)TCG>TTG	p.S336L	SERINC5_uc003kgk.2_Missense_Mutation_p.S334L|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Missense_Mutation_p.S336L|SERINC5_uc011ctj.1_Missense_Mutation_p.S336L	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	336	Extracellular (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GTCAGAACTCGATCTTGTTGT	0.463													46	58					0	0	0.000781405	0	0
VCAN	1462	broad.mit.edu	37	5	82816935	82816935	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:82816935T>A	uc003kii.3	+	7	3166	c.2810T>A	c.(2809-2811)GTA>GAA	p.V937E	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.V937E|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	937	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TCTAAGCCAGTATCTACTGTT	0.438													31	38					0	0	0.000692331	0	0
VCAN	1462	broad.mit.edu	37	5	82817592	82817592	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:82817592C>T	uc003kii.3	+	7	3823	c.3467C>T	c.(3466-3468)CCT>CTT	p.P1156L	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.P1156L|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1156	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TCTTTGAGTCCTTTTAGTACC	0.393													21	38					0	0	0.00229938	0	0
GPR98	84059	broad.mit.edu	37	5	89943320	89943320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:89943320C>T	uc003kju.2	+	17	3124	c.3028C>T	c.(3028-3030)CGT>TGT	p.R1010C	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1010	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCAGAACCTCGTGTAGTGAG	0.438													14	23					0	0	0.000308642	0	0
GPR98	84059	broad.mit.edu	37	5	90012451	90012451	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:90012451C>T	uc003kju.2	+	43	9448	c.9352C>T	c.(9352-9354)CAG>TAG	p.Q3118*	GPR98_uc003kjt.2_Nonsense_Mutation_p.Q824*|GPR98_uc003kjv.2_Nonsense_Mutation_p.Q718*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3118	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGTGACAGTTCAGTTCATTGT	0.413													23	29					0	0	0.00229938	0	0
GPR98	84059	broad.mit.edu	37	5	90041002	90041002	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:90041002G>A	uc003kju.2	+	51	10785	c.10689G>A	c.(10687-10689)AAG>AAA	p.K3563K	GPR98_uc003kjt.2_Silent_p.K1269K|GPR98_uc003kjv.2_Silent_p.K1163K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3563	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTCAAGCAAGAATTTAATAG	0.388													50	110					0	0	0.000781405	0	0
GPR98	84059	broad.mit.edu	37	5	90046514	90046514	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:90046514G>A	uc003kju.2	+	53	11217	c.11121G>A	c.(11119-11121)GTG>GTA	p.V3707V	GPR98_uc003kjt.2_Silent_p.V1413V|GPR98_uc003kjv.2_Silent_p.V1307V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3707	Calx-beta 24.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCTCAGGAGTGGTATGTAATT	0.368													47	78					0	0	0.000781405	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102493981	102493982	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:102493981_102493982GG>AA	uc003kod.3	+	15	2098_2099	c.1579_1580GG>AA	c.(1579-1581)GGA>AAA	p.G527K	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.G527K	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	527					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TGAAGAACTTGGAAGAGCCTTC	0.386													7	15					0	0	6.4e-05	0	0
C5orf30	90355	broad.mit.edu	37	5	102612106	102612106	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:102612106G>A	uc003kog.1	+	3	755	c.486G>A	c.(484-486)AGG>AGA	p.R162R	C5orf30_uc003koh.1_Silent_p.R162R	NM_033211	NP_149988	Q96GV9	CE030_HUMAN	hypothetical protein LOC90355	162											0		all_cancers(142;2.22e-05)|all_epithelial(76;9.54e-08)|Prostate(80;0.0174)|Colorectal(57;0.0551)|Ovarian(225;0.11)|Lung NSC(167;0.136)|all_lung(232;0.18)		Epithelial(69;2.84e-14)|COAD - Colon adenocarcinoma(37;0.00762)		AAGGTAAGAGGGCTCACTCCA	0.468													20	21					0	0	0.00229938	0	0
WDR36	134430	broad.mit.edu	37	5	110462515	110462515	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:110462515C>T	uc003kpd.2	+	23	2907	c.2790C>T	c.(2788-2790)ACC>ACT	p.T930T	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	930					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		AAAACTGGACCCATTTGCAAT	0.323													19	18					0	0	0.00074312	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111600674	111600674	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:111600674C>T	uc003kpv.1	-	6	747	c.473G>A	c.(472-474)GGA>GAA	p.G158E	EPB41L4A_uc003kpw.1_Missense_Mutation_p.G158E	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	158	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		AGATACATATCCTGCAGTATG	0.333													50	85					0	0	0.000781405	0	0
SNCAIP	9627	broad.mit.edu	37	5	121739515	121739515	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:121739515C>T	uc003ksw.1	+	3	291	c.85C>T	c.(85-87)CCA>TCA	p.P29S	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.P29S|SNCAIP_uc003ksx.1_Missense_Mutation_p.P76S|SNCAIP_uc003ksy.1_Silent_p.S13S|SNCAIP_uc003ksz.1_Silent_p.S13S|SNCAIP_uc010jcu.2_Silent_p.S13S|SNCAIP_uc011cwm.1_Silent_p.S13S|SNCAIP_uc003kta.1_Silent_p.S11S|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.S13S|SNCAIP_uc010jcx.1_Missense_Mutation_p.P29S	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	29					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CAAGACGATCCCAGAACTGTG	0.458													19	23					0	0	0.00188189	0	0
PRRC1	133619	broad.mit.edu	37	5	126883513	126883513	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:126883513G>T	uc003kuk.2	+	8	1208	c.1028G>T	c.(1027-1029)TGG>TTG	p.W343L	PRRC1_uc003kuj.3_Missense_Mutation_p.W343L	NM_130809	NP_570721	Q96M27	PRRC1_HUMAN	proline-rich coiled-coil 1	343						Golgi apparatus					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0851)|Epithelial(69;0.113)		TGTTGCAGATGGTTTGACATT	0.353													7	68					0.000274275	0.00122846	0.000274275	1	0
FBN2	2201	broad.mit.edu	37	5	127623002	127623002	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:127623002T>C	uc003kuu.2	-	54	7317	c.6878A>G	c.(6877-6879)AAA>AGA	p.K2293R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2293	EGF-like 38; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGCCTTACCTTTGCACATCTT	0.438													60	58					0	0	0.000781405	0	0
FBN2	2201	broad.mit.edu	37	5	127624855	127624855	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:127624855C>A	uc003kuu.2	-	52	7040	c.6601G>T	c.(6601-6603)GGC>TGC	p.G2201C		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2201	EGF-like 36; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGGTTGTAGCCCATTGGACAT	0.403													23	33					6.32553e-13	2.88345e-12	0.000720815	1	0
SLC27A6	28965	broad.mit.edu	37	5	128351593	128351593	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:128351593G>A	uc003kuy.2	+	6	1381	c.985G>A	c.(985-987)GAT>AAT	p.D329N	SLC27A6_uc003kuz.2_Missense_Mutation_p.D329N	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	329					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGGAGAAAAGGATCATAAGGT	0.308													7	26					0	0	0.000274275	0	0
P4HA2	8974	broad.mit.edu	37	5	131546162	131546162	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:131546162G>A	uc003kwh.2	-	6	1088	c.524C>T	c.(523-525)TCG>TTG	p.S175L	P4HA2_uc003kwg.2_Missense_Mutation_p.S175L|P4HA2_uc003kwi.2_Missense_Mutation_p.S175L|P4HA2_uc003kwk.2_Missense_Mutation_p.S175L|P4HA2_uc003kwl.2_Missense_Mutation_p.S175L|P4HA2_uc003kwj.2_Missense_Mutation_p.S175L	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	175						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	ATTGTAGGCCGAGCGGCCCAT	0.537													117	129					0	0	0.000781405	0	0
IL4	3565	broad.mit.edu	37	5	132010149	132010149	+	Splice_Site	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:132010149A>G	uc003kxk.1	+	2	506	c.136_splice	c.e2-2	p.T46_splice	IL4_uc003kxl.1_Intron	NM_000589	NP_000580	P05112	IL4_HUMAN	interleukin 4 isoform 1 precursor						B cell differentiation|cellular defense response|chemotaxis|cholesterol metabolic process|connective tissue growth factor biosynthetic process|negative regulation of apoptosis|negative regulation of osteoclast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of interleukin-13 production|positive regulation of isotype switching to IgE isotypes|positive regulation of isotype switching to IgG isotypes|positive regulation of MHC class II biosynthetic process|positive regulation of T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|T-helper 2 cell cytokine production	extracellular space	cytokine activity|growth factor activity|interleukin-4 receptor binding				0		all_cancers(142;2.81e-05)|all_lung(232;1.47e-05)|Lung NSC(810;2.31e-05)|all_neural(839;0.0459)|Ovarian(839;0.0481)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.00245)		GCCTGGACCAAGACTCTGTGC	0.517													30	59					0	0	0.000692331	0	0
GDF9	2661	broad.mit.edu	37	5	132197738	132197738	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:132197738C>T	uc003kxz.1	-	2	1160	c.908G>A	c.(907-909)GGA>GAA	p.G303E	GDF9_uc011cxj.1_Missense_Mutation_p.G215E	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	303					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGCCTCTTCTCCCACAGGATA	0.537													18	32					0	0	0.000566183	0	0
TRPC7	57113	broad.mit.edu	37	5	135602072	135602072	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:135602072G>A	uc003lbn.1	-	4	1181	c.1178C>T	c.(1177-1179)TCT>TTT	p.S393F	TRPC7_uc010jef.1_Missense_Mutation_p.S330F|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.S324F|TRPC7_uc010jei.1_Missense_Mutation_p.S269F|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	394	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GATTGTAAAAGAAACTGCATG	0.408													13	12					0	0	0.00136819	0	0
TRPC7	57113	broad.mit.edu	37	5	135692931	135692931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:135692931C>T	uc003lbn.1	-	1	145	c.142G>A	c.(142-144)GAC>AAC	p.D48N	TRPC7_uc010jef.1_Missense_Mutation_p.D40N|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.D40N|TRPC7_uc010jei.1_Missense_Mutation_p.D40N|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	49	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCAGCCGAGTCCAGGAAGCGC	0.602													34	67					0	0	0.000814825	0	0
MATR3	9782	broad.mit.edu	37	5	138661307	138661307	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:138661307C>T	uc003ldu.2	+	16	2754	c.2327C>T	c.(2326-2328)CCA>CTA	p.P776L	MATR3_uc003ldt.2_Missense_Mutation_p.P438L|MATR3_uc003ldw.2_Missense_Mutation_p.P824L|MATR3_uc003ldx.2_Missense_Mutation_p.P776L|MATR3_uc010jfc.2_Missense_Mutation_p.P776L|MATR3_uc011czb.1_Missense_Mutation_p.P488L|MATR3_uc003ldz.2_Missense_Mutation_p.P776L|MATR3_uc003lea.2_Missense_Mutation_p.P776L|MATR3_uc003leb.2_Missense_Mutation_p.P438L|MATR3_uc003lec.2_Missense_Mutation_p.P453L	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	776						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TATACAATCCCAGATGAGTAT	0.418													28	32					0	0	0.00178596	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139815696	139815696	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:139815696C>T	uc003lfs.1	+	2	438	c.314C>T	c.(313-315)TCA>TTA	p.S105L	ANKHD1_uc003lfq.1_Missense_Mutation_p.S105L|ANKHD1_uc003lfr.2_Missense_Mutation_p.S105L|ANKHD1_uc003lfp.2_Missense_Mutation_p.S105L|ANKHD1_uc003lfo.2_Missense_Mutation_p.S105L|ANKHD1_uc010jfk.2_Missense_Mutation_p.S105L	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	105						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGTTGAATCATTTATTTTG	0.318													6	15					0	0	0.00198382	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202936	140202936	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140202936G>A	uc003lhl.2	+	1	1576	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.E526K|PCDHA5_uc003lhj.1_Missense_Mutation_p.E526K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	526	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGAGGAAGTGGAGCT	0.692													45	79					0	0	0.000781405	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216071	140216071	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140216071C>T	uc003lhq.2	+	1	2103	c.2103C>T	c.(2101-2103)ATC>ATT	p.I701I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.I701I	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	701	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTACCTGATCATCGCCATCT	0.627													38	39					0	0	0.000781405	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229941	140229941	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140229941C>T	uc003lhu.2	+	1	2585	c.1861C>T	c.(1861-1863)CCG>TCG	p.P621S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.P621S	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	621	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGAGCATCCCGTTCCGCGT	0.662													30	25					0	0	0.00058488	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236762	140236762	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140236762G>A	uc003lhx.2	+	1	1129	c.1129G>A	c.(1129-1131)GAT>AAT	p.D377N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.D377N|PCDHA10_uc011dad.1_Missense_Mutation_p.D377N	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	377	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGACCATGATTCAGGAGC	0.502													48	53					0	0	0.000781405	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480236	140480236	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140480236G>A	uc003lio.2	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	1					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAGTGCAATGGAGGCGGGAG	0.527													25	41					0	0	0.00127121	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516156	140516156	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140516156G>A	uc003liq.2	+	1	1357	c.1140G>A	c.(1138-1140)ATG>ATA	p.M380I		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	380	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGGTAGGATGATTTGCTCCA	0.488													24	46					0	0	0.001512	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710915	140710915	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140710915C>T	uc003lji.1	+	1	664	c.664C>T	c.(664-666)CGT>TGT	p.R222C	PCDHGA1_uc011dan.1_Missense_Mutation_p.R222C	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	222	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAACCAGTCCGTTCAGGGAC	0.493													21	28					0	0	0.00229938	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755684	140755684	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140755684C>T	uc003ljy.1	+	1	2034	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.L678L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	678	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGCAGCCTCGAGCCCTCCG	0.687													28	34					0	0	0.000814825	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778104	140778104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140778104C>T	uc003lkf.1	+	1	410	c.410C>T	c.(409-411)TCC>TTC	p.S137F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.S137F	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	137	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCAAAATTCCTTTGAGCTG	0.413													27	35					0	0	0.00195071	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857635	140857635	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140857635A>G	uc003lkv.1	+	1	2067	c.1952A>G	c.(1951-1953)AAT>AGT	p.N651S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Missense_Mutation_p.N651S|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	651	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCAAAGACAATGGGGAGCCT	0.577											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	39					0	0	0.000692331	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865602	140865602	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140865602C>T	uc003lky.1	+	1	862	c.862C>T	c.(862-864)CGT>TGT	p.R288C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.R288C	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	288	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACCCCTGATCGTGTAAGAAA	0.512													42	65					0	0	0.000781405	0	0
DIAPH1	1729	broad.mit.edu	37	5	140962857	140962857	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:140962857C>A	uc003llb.3	-	6	677	c.536G>T	c.(535-537)TGG>TTG	p.W179L	DIAPH1_uc003llc.3_Missense_Mutation_p.W170L	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	179	GBD/FH3.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTTGCACCCAACTGTAAGG	0.408													8	188					0.000673444	0.00301411	0.000673444	1	0
RELL2	285613	broad.mit.edu	37	5	141019704	141019704	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:141019704G>T	uc003lli.2	+	6	1569	c.721G>T	c.(721-723)GGA>TGA	p.G241*	RELL2_uc003llh.2_Nonsense_Mutation_p.G241*|RELL2_uc003llg.2_Nonsense_Mutation_p.G175*|RELL2_uc010jgf.2_Nonsense_Mutation_p.G175*|FCHSD1_uc010jgg.2_3'UTR|FCHSD1_uc003llj.2_RNA|FCHSD1_uc003llk.2_3'UTR	NM_001130029	NP_001123501	Q8NC24	RELL2_HUMAN	RELT-like 2	241						integral to membrane|plasma membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAGAATGGAGGACTCAGGGA	0.667													11	16					3.07112e-06	1.38155e-05	0.000978159	1	0
PCDH12	51294	broad.mit.edu	37	5	141337251	141337251	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:141337251C>T	uc003llx.2	-	1	1377	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	56	Cadherin 1.|Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCTCTCCTCCCGGCCCAGT	0.602													48	61					0	0	0.000781405	0	0
TCERG1	10915	broad.mit.edu	37	5	145838453	145838453	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:145838453T>C	uc003lob.2	+	4	485	c.445T>C	c.(445-447)TAT>CAT	p.Y149H	TCERG1_uc003loc.2_Missense_Mutation_p.Y149H|TCERG1_uc011dbt.1_Missense_Mutation_p.Y149H	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	149	WW 1.			YYY->AAA: Reduces repression of transcription by 35%. Reduces repression of transcription by 63%; when associated with 446-AAA-448.	regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCAGGTTTATTATTATAATGC	0.328													49	53					0	0	0.000781405	0	0
SPINK5	11005	broad.mit.edu	37	5	147486600	147486600	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:147486600G>A	uc003lox.2	+	17	1553	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	SPINK5_uc010jgs.1_Missense_Mutation_p.E466K|SPINK5_uc010jgr.2_Missense_Mutation_p.E475K|SPINK5_uc003low.2_Missense_Mutation_p.E494K|SPINK5_uc003loy.2_Missense_Mutation_p.E494K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	494	Kazal-like 8.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATTTCCCAGGAAATCTGCAG	0.393													12	14					0	0	0.00185496	0	0
FBXO38	81545	broad.mit.edu	37	5	147796606	147796606	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:147796606C>T	uc003lpf.1	+	12	1577	c.1457C>T	c.(1456-1458)TCA>TTA	p.S486L	FBXO38_uc003lpg.1_Missense_Mutation_p.S486L|FBXO38_uc003lph.2_Missense_Mutation_p.S486L	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	486						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGTTTCATCAGCTCTTGTT	0.413													5	15					0	0	0.00198382	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149214868	149214869	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:149214868_149214869CC>TT	uc003lrc.2	+	7	1789_1790	c.1747_1748CC>TT	c.(1747-1749)CCA>TTA	p.P583L	PPARGC1B_uc003lrb.1_Missense_Mutation_p.P583L|PPARGC1B_uc003lrd.2_Missense_Mutation_p.P544L|PPARGC1B_uc003lrf.2_Missense_Mutation_p.P562L|PPARGC1B_uc003lre.1_Missense_Mutation_p.P562L	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	583					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CACCAGCGACCCAACTTTTGGC	0.584													35	88					0	0	6.4e-05	0	0
FAT2	2196	broad.mit.edu	37	5	150924933	150924933	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:150924933G>A	uc003lue.3	-	9	5768	c.5755C>T	c.(5755-5757)CAT>TAT	p.H1919Y	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1919	Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGACAGGATGGATGGTAACA	0.502													43	42					0	0	0.000781405	0	0
FAT2	2196	broad.mit.edu	37	5	150946169	150946169	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:150946169G>A	uc003lue.3	-	1	2337	c.2324C>T	c.(2323-2325)GCT>GTT	p.A775V	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.A775V	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	775	Extracellular (Potential).|Cadherin 6.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAAGGGAGCAGCTACAGTGAG	0.502													22	30					0	0	0.00152264	0	0
GLRA1	2741	broad.mit.edu	37	5	151271933	151271933	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:151271933G>A	uc003lut.2	-	2	410	c.123C>T	c.(121-123)TTC>TTT	p.F41F	GLRA1_uc003lur.2_Silent_p.F41F|GLRA1_uc003lus.2_Intron	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	41	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCTTATCCAGGAAATCCGAGG	0.498													20	27					0	0	0.00152264	0	0
GEMIN5	25929	broad.mit.edu	37	5	154267830	154267830	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:154267830G>A	uc003lvx.3	-	28	4550	c.4467C>T	c.(4465-4467)CTC>CTT	p.L1489L	GEMIN5_uc011ddk.1_Silent_p.L1488L	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1489					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATTTCTGAAGGAGCTCTTGGG	0.498													38	46					0	0	0.00170553	0	0
FAM71B	153745	broad.mit.edu	37	5	156592594	156592595	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:156592594_156592595CG>AT	uc003lwn.2	-	1	685_686	c.585_586CG>AT	c.(583-588)CCCGAA>CCATAA	p.E196*		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	196						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGTTGTCTTCGGGTGGTGCGT	0.495													8	361					0	0	6.4e-05	0	0
IL12B	3593	broad.mit.edu	37	5	158753751	158753751	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:158753751C>T	uc003lxr.1	-	2	82	c.40G>A	c.(40-42)GTT>ATT	p.V14I		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	14					cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCCAGAAAAACCAGGGAAAAC	0.353													26	40					0	0	0.001512	0	0
ATP10B	23120	broad.mit.edu	37	5	160067517	160067517	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:160067517G>A	uc003lym.1	-	10	1798	c.951C>T	c.(949-951)ATC>ATT	p.I317I	ATP10B_uc003lyp.2_Silent_p.I317I|ATP10B_uc011deg.1_Silent_p.I361I|ATP10B_uc003lyo.2_Silent_p.I289I	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	317	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGCAGAAGAAGATGTCTATAT	0.473													34	59					0	0	0.00111076	0	0
ODZ2	57451	broad.mit.edu	37	5	167626893	167626893	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:167626893C>T	uc010jjd.2	+	17	3160	c.3160C>T	c.(3160-3162)CCT>TCT	p.P1054S	ODZ2_uc003lzr.3_Missense_Mutation_p.P831S|ODZ2_uc003lzt.3_Missense_Mutation_p.P427S|ODZ2_uc010jje.2_Missense_Mutation_p.P325S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AATCGAGCTCCCTGGTTCCAA	0.493													64	91					0	0	0.000781405	0	0
ODZ2	57451	broad.mit.edu	37	5	167674492	167674492	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:167674492G>A	uc010jjd.2	+	27	6521	c.6521G>A	c.(6520-6522)GGC>GAC	p.G2174D	ODZ2_uc003lzr.3_Missense_Mutation_p.G1944D|ODZ2_uc003lzt.3_Missense_Mutation_p.G1547D|ODZ2_uc010jje.2_Missense_Mutation_p.G1438D	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GACAGCATGGGCAGGGTGATC	0.557													12	23					0	0	0.000978159	0	0
RARS	5917	broad.mit.edu	37	5	167915683	167915683	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:167915683T>A	uc003lzx.2	+	2	163	c.122T>A	c.(121-123)TTG>TAG	p.L41*	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	41	Could be involved in the assembly of the multisynthetase complex.				arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TCTCCAAATTTGGAGCAGTTA	0.353													37	36					0	0	0.000953801	0	0
SLIT3	6586	broad.mit.edu	37	5	168139336	168139336	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:168139336G>A	uc003mab.2	-	24	2927	c.2507C>T	c.(2506-2508)TCC>TTC	p.S836F	SLIT3_uc010jjg.2_Missense_Mutation_p.S836F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	836	LRR 20.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGAACGCTGGAAATGTCATT	0.463													62	72					0	0	0.000781405	0	0
CPLX2	10814	broad.mit.edu	37	5	175305757	175305757	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:175305757G>A	uc003mde.1	+	3	361	c.15G>A	c.(13-15)ATG>ATA	p.M5I	CPLX2_uc003mdf.1_Missense_Mutation_p.M5I	NM_006650	NP_006641	Q6PUV4	CPLX2_HUMAN	complexin 2	5					mast cell degranulation|positive regulation of synaptic plasticity|vesicle docking involved in exocytosis	cytosol				ovary(1)	1	all_cancers(89;0.004)|Renal(175;0.000269)|Lung NSC(126;0.00441)|all_lung(126;0.00747)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ACTTCGTCATGAAGCAGGCCC	0.667													12	32					0	0	0.000308642	0	0
RNF44	22838	broad.mit.edu	37	5	175958548	175958548	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:175958548G>A	uc003mek.1	-	4	906	c.381C>T	c.(379-381)ATC>ATT	p.I127I	RNF44_uc011dfo.1_Silent_p.I35I|RNF44_uc003mel.1_5'Flank	NM_014901	NP_055716	Q7L0R7	RNF44_HUMAN	ring finger protein 44	127	Pro-rich.						zinc ion binding				0	all_cancers(89;0.0029)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCAGCCAGGGATGTGCTGGC	0.627													6	9					0	0	0.00116845	0	0
GRM6	2916	broad.mit.edu	37	5	178408731	178408731	+	Missense_Mutation	SNP	C	T	T	rs145110689		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:178408731C>T	uc003mjr.2	-	10	2740	c.2561G>A	c.(2560-2562)CGA>CAA	p.R854Q	GRM6_uc003mjq.2_Missense_Mutation_p.R257Q	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	854	Cytoplasmic (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCTCCGCTTTCGCTTCTGCAC	0.612													28	56					0	0	0.00127121	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179303026	179303026	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:179303026G>A	uc003mlh.2	-	11	1831	c.1794C>T	c.(1792-1794)ATC>ATT	p.I598I	TBC1D9B_uc003mli.2_Silent_p.I598I|TBC1D9B_uc003mlj.2_Silent_p.I598I	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	598	Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGAGGTCACGATGTTCATTG	0.632													5	12					0	0	0.000602214	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166915	180166915	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:180166915G>A	uc003mmf.1	-	1	144	c.144C>T	c.(142-144)CTC>CTT	p.L48L		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTAGCCAGGAGAGAGCGATGA	0.512													20	28					0	0	0.00152264	0	0
SNRNP48	154007	broad.mit.edu	37	6	7594068	7594068	+	Silent	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:7594068C>A	uc003mxr.2	+	2	317	c.258C>A	c.(256-258)ACC>ACA	p.T86T	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	86					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						TGGGCTATACCAAAGAAGAAG	0.323													7	152					0.000157383	0.000705934	0.000157383	1	0
MAK	4117	broad.mit.edu	37	6	10784762	10784762	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:10784762C>T	uc003mzl.2	-	10	1589	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.E454K	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	454					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				CTCTTGTTTTCCCCTGTCGAG	0.463													67	63					0	0	0.000781405	0	0
SIRT5	23408	broad.mit.edu	37	6	13612059	13612059	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:13612059G>A	uc003nay.2	+	10	1191	c.895G>A	c.(895-897)GAA>AAA	p.E299K	SIRT5_uc003nax.2_Missense_Mutation_p.E191K|SIRT5_uc011dit.1_Missense_Mutation_p.E281K	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	299	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	GACTCTTCCTGAAGCCCTTGC	0.423													133	340					0	0	0.000781405	0	0
JARID2	3720	broad.mit.edu	37	6	15513250	15513250	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:15513250C>T	uc003nbj.2	+	15	3484	c.3240C>T	c.(3238-3240)ACC>ACT	p.T1080T	JARID2_uc011div.1_Silent_p.T908T	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	1080					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CTCTCAGTACCATCTCAGCCC	0.572													29	102					0	0	0.00106085	0	0
CDKAL1	54901	broad.mit.edu	37	6	21065409	21065410	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:21065409_21065410CC>AA	uc003ndc.1	+	12	1360_1361	c.1186_1187CC>AA	c.(1186-1188)CCA>AAA	p.P396K	CDKAL1_uc003ndd.1_Missense_Mutation_p.P396K|CDKAL1_uc003nde.1_Missense_Mutation_p.P326K|CDKAL1_uc003ndf.1_5'UTR	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	396					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			CCAATTTTACCCAAGACCAGGA	0.371													12	527					0	0	6.4e-05	0	0
SLC17A1	6568	broad.mit.edu	37	6	25819768	25819768	+	Missense_Mutation	SNP	C	T	T	rs146175657	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:25819768C>T	uc003nfh.3	-	5	616	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.R165Q|SLC17A1_uc010jqc.1_Missense_Mutation_p.R165Q	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	167					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAGTCGGCCTCGTTCCAGGGG	0.393													26	95					0	0	0.00106085	0	0
OR14J1	442191	broad.mit.edu	37	6	29275391	29275391	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:29275391C>T	uc011dln.1	+	1	925	c.925C>T	c.(925-927)CCT>TCT	p.P309S		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGAAGAGCTTCCTCAGAGAAA	0.294													33	26					0	0	0.00209593	0	0
OR12D3	81797	broad.mit.edu	37	6	29342984	29342984	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:29342984C>T	uc003nme.2	-	1	85	c.81G>A	c.(79-81)GGG>GGA	p.G27G		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						TTAAGAAAATCCCAAAGAAGA	0.388													25	15					0	0	0.00127121	0	0
OR10C1	442194	broad.mit.edu	37	6	29408518	29408518	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:29408518C>T	uc011dlp.1	+	1	726	c.726C>T	c.(724-726)TCC>TCT	p.S242S	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGCTCCTCCCACCTGATCA	0.592													94	206					0	0	0.000781405	0	0
MOG	4340	broad.mit.edu	37	6	29627375	29627375	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:29627375G>A	uc003nnf.2	+	2	546	c.368G>A	c.(367-369)GGA>GAA	p.G123E	MOG_uc003qzk.1_Missense_Mutation_p.G123E|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Missense_Mutation_p.G123E|MOG_uc003nmz.2_Missense_Mutation_p.G123E|MOG_uc011dlt.1_Missense_Mutation_p.G53E|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Missense_Mutation_p.G123E|MOG_uc003nne.2_Missense_Mutation_p.G123E|MOG_uc003nng.2_Missense_Mutation_p.G123E|MOG_uc003nnh.2_Missense_Mutation_p.G123E|MOG_uc003nni.2_Missense_Mutation_p.G123E|MOG_uc003nnj.2_Missense_Mutation_p.G123E|MOG_uc003nnk.2_Missense_Mutation_p.G123E	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	123	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						TCAGATGAAGGAGGTTTCACC	0.463													50	32					0	0	0.000781405	0	0
PPP1R11	6992	broad.mit.edu	37	6	30036459	30036459	+	Silent	SNP	C	T	T	rs140805312		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:30036459C>T	uc003npb.2	+	2	418	c.162C>T	c.(160-162)GGC>GGT	p.G54G	PPP1R11_uc010jrw.2_RNA|PPP1R11_uc003npc.2_RNA	NM_021959	NP_068778	O60927	PP1RB_HUMAN	protein phosphatase 1, regulatory (inhibitor)	54						soluble fraction	protein binding|protein phosphatase inhibitor activity			ovary(1)|lung(1)|skin(1)	3						AACACATGGGCCGCCGCTCAT	0.498													31	59					0	0	0.00178596	0	0
C6orf27	80737	broad.mit.edu	37	6	31734488	31734488	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:31734488G>A	uc011dog.1	-	14	2174	c.1936C>T	c.(1936-1938)CCT>TCT	p.P646S	C6orf27_uc003nxd.2_Missense_Mutation_p.P321S	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	646						extracellular region				ovary(3)	3						GGATCCCCAGGATTGGCTCTG	0.617													137	102					0	0	0.000781405	0	0
VARS	7407	broad.mit.edu	37	6	31752211	31752211	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:31752211G>A	uc003nxe.2	-	12	1959	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	512					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CGAGGACCCCGAACTCCACCT	0.597													180	458					0	0	0.000781405	0	0
NEU1	4758	broad.mit.edu	37	6	31827680	31827680	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:31827680G>A	uc003nxq.3	-	6	1220	c.1064C>T	c.(1063-1065)TCA>TTA	p.S355L	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_Missense_Mutation_p.S186L|NEU1_uc003nxs.3_3'UTR	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	355	BNR 4.					cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	TTTCCGCCATGAGGTACCATT	0.612													142	348					0	0	0.000781405	0	0
CFB	629	broad.mit.edu	37	6	31918441	31918442	+	Missense_Mutation	DNP	CC	AA	AA	rs1803304		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:31918441_31918442CC>AA	uc003nyj.3	+	13	1948_1949	c.1670_1671CC>AA	c.(1669-1671)CCC>CAA	p.P557Q	CFB_uc011dor.1_Missense_Mutation_p.P1059Q	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	557	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CTATTTCACCCCAACTACAACA	0.47													18	470					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32018023	32018024	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:32018023_32018024CC>AA	uc003nzl.2	-	27	9386_9387	c.9184_9185GG>TT	c.(9184-9186)GGG>TTG	p.G3062L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3109	Fibronectin type-III 23.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGTCAGCTCCCCCAGGCGAGGC	0.624													13	717					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32036656	32036657	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:32036656_32036657GG>TT	uc003nzl.2	-	16	6046_6047	c.5844_5845CC>AA	c.(5842-5847)ACCCTG>ACAATG	p.L1949M		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2031	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AAACCATACAGGGTCACCAGGT	0.55													21	553					0	0	6.4e-05	0	0
NOTCH4	4855	broad.mit.edu	37	6	32170241	32170241	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:32170241G>A	uc003obb.2	-	21	3506	c.3367C>T	c.(3367-3369)CCT>TCT	p.P1123S	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_Intron|NOTCH4_uc011dpv.1_Intron	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1123	EGF-like 28.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGGCAGTCAGGACCCCCATAG	0.652													120	256					0	0	0.000781405	0	0
GRM4	2914	broad.mit.edu	37	6	34003584	34003584	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:34003584G>A	uc003oir.3	-	8	2473	c.2303C>T	c.(2302-2304)ACC>ATC	p.T768I	GRM4_uc011dsn.1_Missense_Mutation_p.T721I|GRM4_uc010jvh.2_Missense_Mutation_p.T768I|GRM4_uc010jvi.2_Missense_Mutation_p.T460I|GRM4_uc003oio.2_Missense_Mutation_p.T460I|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.T628I|GRM4_uc003oiq.2_Missense_Mutation_p.T635I|GRM4_uc011dsm.1_Missense_Mutation_p.T599I	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	768	Helical; Name=5; (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GGCATACACGGTGCACGTGAC	0.602													12	29					0	0	0.00136819	0	0
BTBD9	114781	broad.mit.edu	37	6	38561824	38561825	+	Missense_Mutation	DNP	GG	TT	TT	rs139584819	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:38561824_38561825GG>TT	uc003ooa.3	-	4	1040_1041	c.464_465CC>AA	c.(463-465)CCC>CAA	p.P155Q	BTBD9_uc003ony.3_Missense_Mutation_p.P87Q|BTBD9_uc010jwv.2_Missense_Mutation_p.P87Q|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.P155Q	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	155	BACK.				cell adhesion						0						AAGTTAACTTGGGAAGTGAGTA	0.421													11	398					0	0	6.4e-05	0	0
DNAH8	1769	broad.mit.edu	37	6	38980282	38980282	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:38980282G>A	uc003ooe.1	+	89	13532	c.12932G>A	c.(12931-12933)AGA>AAA	p.R4311K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTCTGGAAAAGAGTGTCTTGG	0.413													18	76					0	0	0.00121646	0	0
LRFN2	57497	broad.mit.edu	37	6	40360141	40360141	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:40360141C>T	uc003oph.1	-	3	2376	c.1911G>A	c.(1909-1911)CGG>CGA	p.R637R		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	637	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCCAGGGGGCCCGTCCCAGCC	0.706													6	2					0	0	0.00116845	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102371	44102371	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:44102371G>A	uc003owr.2	+	2	114	c.50G>A	c.(49-51)AGC>AAC	p.S17N	TMEM63B_uc003owq.1_Missense_Mutation_p.S17N|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	17						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CTCAACAACAGCAACCCCAAG	0.647													16	37					0	0	0.00074312	0	0
CYP39A1	51302	broad.mit.edu	37	6	46593237	46593237	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:46593237A>G	uc003oyf.1	-	7	1053	c.849T>C	c.(847-849)TTT>TTC	p.F283F	CYP39A1_uc011dwa.1_Silent_p.F263F|CYP39A1_uc010jzd.1_Silent_p.F111F	NM_016593	NP_057677	Q9NYL5	CP39A_HUMAN	cytochrome P450, family 39, subfamily A,	283					bile acid biosynthetic process|bile acid catabolic process|digestion|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	24-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(1)	1						CAAGTGTCCAAAATGCAACCT	0.313													28	87					0	0	0.00127121	0	0
CD2AP	23607	broad.mit.edu	37	6	47541941	47541942	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:47541941_47541942GG>AA	uc003oyw.2	+	6	1139_1140	c.683_684GG>AA	c.(682-684)CGG>CAA	p.R228Q		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	228					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			GTGAAACTTCGGACAAGAACAT	0.376													59	43					0	0	6.4e-05	0	0
GPR111	222611	broad.mit.edu	37	6	47649087	47649087	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:47649087C>T	uc010jzj.1	+	6	793	c.792C>T	c.(790-792)ATC>ATT	p.I264I	GPR111_uc010jzk.1_Silent_p.I196I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	264	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GCAGCTATATCCTGCTACATT	0.408													50	38					0	0	0.000781405	0	0
GPR111	222611	broad.mit.edu	37	6	47649422	47649422	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:47649422G>A	uc010jzj.1	+	6	1128	c.1127G>A	c.(1126-1128)AGA>AAA	p.R376K	GPR111_uc010jzk.1_Missense_Mutation_p.R308K|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	376	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GAACTTAAAAGAATCTCACTG	0.463													36	107					0	0	0.000692331	0	0
GPR115	221393	broad.mit.edu	37	6	47680197	47680197	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:47680197C>T	uc003oza.1	+	5	663	c.405C>T	c.(403-405)ATC>ATT	p.I135I	GPR115_uc003oyz.1_Silent_p.I192I|GPR115_uc003ozb.1_Silent_p.I133I	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	135	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CTCAAGGAATCCGTAAGAACT	0.418													25	63					0	0	0.000720815	0	0
PGK2	5232	broad.mit.edu	37	6	49754498	49754498	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:49754498G>A	uc003ozu.2	-	1	510	c.403C>T	c.(403-405)CCC>TCC	p.P135S		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	135					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TTTCCAGAGGGATCTTGGCCC	0.507													12	36					0	0	0.00185496	0	0
TFAP2B	7021	broad.mit.edu	37	6	50791406	50791406	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:50791406C>T	uc003pag.2	+	2	534	c.368C>T	c.(367-369)CCC>CTC	p.P123L		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	123	Gln/Pro-rich (transactivation domain).				nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					TCTCTCCTGCCCCAGCCTCGG	0.697													4	13					0	0	0.00024832	0	0
FAM83B	222584	broad.mit.edu	37	6	54792370	54792370	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:54792370G>A	uc003pck.2	+	4	790	c.674G>A	c.(673-675)GGA>GAA	p.G225E		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	225										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AAATTCCATGGAAAAATGGAA	0.333													18	46					0	0	0.00229938	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039448	55039448	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:55039448G>A	uc003pcl.2	+	1	378	c.63G>A	c.(61-63)CTG>CTA	p.L21L	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	21	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTTCGGAGCTGAATGAAACTC	0.537													27	81					0	0	0.00209593	0	0
COL21A1	81578	broad.mit.edu	37	6	56044666	56044666	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:56044666C>T	uc003pcs.2	-	3	582	c.350G>A	c.(349-351)GGG>GAG	p.G117E	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.G117E|COL21A1_uc003pcu.1_Missense_Mutation_p.G117E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	117	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GATGGCCTTCCCTGTCTTTGT	0.473													11	25					0	0	0.00136819	0	0
KIAA1586	57691	broad.mit.edu	37	6	56915604	56915604	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:56915604C>T	uc003pdj.2	+	3	308	c.138C>T	c.(136-138)ATC>ATT	p.I46I	KIAA1586_uc011dxm.1_Intron	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	46							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TTGAATACATCGATCTGGTCT	0.333													39	102					0	0	0.000781405	0	0
LGSN	51557	broad.mit.edu	37	6	63991056	63991056	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:63991056C>T	uc003peh.2	-	4	434	c.400G>A	c.(400-402)GAA>AAA	p.E134K	LGSN_uc003pei.2_Missense_Mutation_p.E134K	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	134					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TTATTCATTTCATTGTCCTTT	0.393													34	13					0	0	0.00283554	0	0
C6orf165	154313	broad.mit.edu	37	6	88173907	88173907	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:88173907G>A	uc003plv.2	+	13	1900	c.1808G>A	c.(1807-1809)GGA>GAA	p.G603E	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.G415E|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	603										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		CTTCGTGGAGGAAAGAGCGAA	0.468													13	2					0	0	0.000422831	0	0
SPACA1	81833	broad.mit.edu	37	6	88767377	88767377	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:88767377G>A	uc003pmn.2	+	3	430	c.313G>A	c.(313-315)GAA>AAA	p.E105K		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	105	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		CCCTGGTGGTGAATCCAAGTG	0.393													22	7					0	0	0.00127121	0	0
FHL5	9457	broad.mit.edu	37	6	97052706	97052706	+	Silent	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:97052706T>C	uc003pos.1	+	4	645	c.240T>C	c.(238-240)CCT>CCC	p.P80P	FHL5_uc003pot.1_Silent_p.P80P	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	80	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		TGGAAAAGCCTTTTGCTGCCA	0.488													27	11					0	0	0.00178596	0	0
GRIK2	2898	broad.mit.edu	37	6	102134192	102134192	+	Silent	SNP	G	A	A	rs145542805	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:102134192G>A	uc003pqp.3	+	6	1164	c.915G>A	c.(913-915)CCG>CCA	p.P305P	GRIK2_uc003pqn.2_Silent_p.P305P|GRIK2_uc003pqo.3_Silent_p.P305P|GRIK2_uc010kcw.2_Silent_p.P305P	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	305	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	AGGCACCTCCGAAACCCGATT	0.393													26	5					0	0	0.00127121	0	0
GPR6	2830	broad.mit.edu	37	6	110300401	110300402	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:110300401_110300402GG>AA	uc011eaw.1	+	2	266_267	c.86_87GG>AA	c.(85-87)GGG>GAA	p.G29E	GPR6_uc011eav.1_Missense_Mutation_p.G44E|GPR6_uc003ptu.2_Missense_Mutation_p.G29E	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	29	Extracellular (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		acagcagcaggggggccggACA	0.49													24	1					0	0	6.4e-05	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378688	114378688	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:114378688G>A	uc003pwg.3	-	2	806	c.774C>T	c.(772-774)CTC>CTT	p.L258L	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Silent_p.L258L	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	258	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		GTTCCGTGATGAGGCGATCTC	0.428													25	11					0	0	0.000586117	0	0
RFX6	222546	broad.mit.edu	37	6	117248462	117248462	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:117248462C>T	uc003pxm.2	+	17	2221	c.2158C>T	c.(2158-2160)CAT>TAT	p.H720Y		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	720					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						ACTCTATCCTCATCACACCGA	0.527													12	4					0	0	0.000978159	0	0
SLC35F1	222553	broad.mit.edu	37	6	118588217	118588217	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:118588217C>T	uc003pxx.3	+	4	738	c.537C>T	c.(535-537)ATC>ATT	p.I179I	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	179					transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		TCCTGCTGATCCGGTACAAGG	0.517													60	21					0	0	0.000781405	0	0
C6orf170	221322	broad.mit.edu	37	6	121560234	121560234	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:121560234A>G	uc003pyo.1	-	20	2414	c.2346T>C	c.(2344-2346)ATT>ATC	p.I782I	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_5'Flank|C6orf170_uc003pyp.1_Silent_p.I301I	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	782					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		AGCTTCGGTCAATAGGATCCA	0.338													33	19					0	0	0.00283554	0	0
C6orf170	221322	broad.mit.edu	37	6	121560297	121560297	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:121560297A>G	uc003pyo.1	-	20	2351	c.2283T>C	c.(2281-2283)AAT>AAC	p.N761N	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_5'Flank|C6orf170_uc003pyp.1_Silent_p.N280N	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	761					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		CATATTCCAGATTGGACCATA	0.333													27	19					0	0	0.001512	0	0
GJA1	2697	broad.mit.edu	37	6	121768668	121768668	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:121768668C>T	uc003pyr.2	+	2	925	c.675C>T	c.(673-675)ATC>ATT	p.I225I	GJA1_uc011ebo.1_Silent_p.I126I|GJA1_uc011ebp.1_Silent_p.I13I	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	225	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	CCTTGAATATCATTGAACTCT	0.522													54	28					0	0	0.000781405	0	0
TRDN	10345	broad.mit.edu	37	6	123673700	123673700	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:123673700G>A	uc003pzj.1	-	21	1375	c.1353C>T	c.(1351-1353)ACC>ACT	p.T451T	TRDN_uc003pzk.1_Silent_p.T452T|TRDN_uc003pzl.1_Silent_p.T452T|TRDN_uc010kem.1_5'UTR	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	451	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		CCACTGTCTTGGTTGTTTTCT	0.398													6	0					0	0	0.000157383	0	0
C6orf58	352999	broad.mit.edu	37	6	127898534	127898534	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr6:127898534G>A	uc003qbh.2	+	1	216	c.204G>A	c.(202-204)TTG>TTA	p.L68L		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	68						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		AAATCATATTGAATCAGACAG	0.418													25	0					0	0	0.000586117	0	0
HEATR2	54919	broad.mit.edu	37	7	780536	780537	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:780536_780537CC>TT	uc010krz.1	+	3	881_882	c.861_862CC>TT	c.(859-864)ATCCCT>ATTTCT	p.P288S	HEATR2_uc003siz.2_Missense_Mutation_p.P156S	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	288	HEAT 4.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		ACAAGCTCATCCCTCTGCTGCT	0.639													52	68					0	0	6.4e-05	0	0
GLCCI1	113263	broad.mit.edu	37	7	8095132	8095132	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:8095132C>T	uc003srk.2	+	4	1325	c.766C>T	c.(766-768)CGC>TGC	p.R256C		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	256											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GGAGAAAGATCGCCAGTCACC	0.423													22	35					0	0	0.00278032	0	0
SCIN	85477	broad.mit.edu	37	7	12691515	12691515	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:12691515C>T	uc003ssn.3	+	15	2219	c.2009C>T	c.(2008-2010)TCT>TTT	p.S670F	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.S423F	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	670	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		AAAAAAGAATCTCTGAAGTCT	0.333													3	11					0	0	0.000602214	0	0
DGKB	1607	broad.mit.edu	37	7	14613949	14613949	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:14613949C>T	uc003ssz.2	-	19	1848	c.1661G>A	c.(1660-1662)AGC>AAC	p.S554N	DGKB_uc011jxt.1_Missense_Mutation_p.S535N|DGKB_uc003sta.2_Missense_Mutation_p.S554N|DGKB_uc011jxu.1_Missense_Mutation_p.S553N	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	554	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GATTTCTGTGCTGTTTTCAAT	0.343													43	71					0	0	0.00148497	0	0
AHR	196	broad.mit.edu	37	7	17382555	17382555	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:17382555G>A	uc011jxz.1	+	11	3027	c.2414G>A	c.(2413-2415)GGA>GAA	p.G805E	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	805					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					TTTCAGAATGGAGTTTTAAAT	0.328													21	40					0	0	0.00188189	0	0
DFNA5	1687	broad.mit.edu	37	7	24747848	24747848	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:24747848G>A	uc010kus.1	-	7	976	c.888C>T	c.(886-888)TTC>TTT	p.F296F	DFNA5_uc003swz.2_Silent_p.F132F|DFNA5_uc003sxa.1_Silent_p.F296F|DFNA5_uc010kut.1_Silent_p.F132F	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	296					sensory perception of sound					ovary(1)	1						CAAATGGATGGAAATTCCTCT	0.517													15	17					0	0	0.000422831	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27868351	27868352	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:27868351_27868352CG>AT	uc003szl.2	+	17	2431_2432	c.2273_2274CG>AT	c.(2272-2274)CCG>CAT	p.P758H	TAX1BP1_uc011jzo.1_Missense_Mutation_p.P716H|TAX1BP1_uc003szk.2_Missense_Mutation_p.P716H|TAX1BP1_uc011jzp.1_Missense_Mutation_p.P559H	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	758					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			AAGGTGTGCCCGATGTGCAGCG	0.436													13	273					0	0	6.4e-05	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30094910	30094910	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:30094910C>T	uc003tam.1	+	9	1082	c.991C>T	c.(991-993)CCC>TCC	p.P331S	PLEKHA8_uc003tao.2_Missense_Mutation_p.P215S|PLEKHA8_uc003tap.1_Missense_Mutation_p.P331S|PLEKHA8_uc003tan.2_Missense_Mutation_p.P331S	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	331					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						CAGTGGCATTCCCACAGAAGC	0.403													41	66					0	0	0.000781405	0	0
NPSR1	387129	broad.mit.edu	37	7	34724190	34724190	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:34724190C>T	uc003teg.1	+	2	302	c.174C>T	c.(172-174)GTC>GTT	p.V58V	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.V58V|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Silent_p.V58V|NPSR1_uc003tei.1_Silent_p.V58V|NPSR1_uc010kww.1_Silent_p.V58V|NPSR1_uc011kar.1_Silent_p.V58V	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	58	Helical; Name=1; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CTCTGTGGGTCCTCTTTGTTT	0.433													21	59					0	0	0.000720815	0	0
TBX20	57057	broad.mit.edu	37	7	35242073	35242073	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:35242073T>C	uc011kas.1	-	8	1324	c.1313A>G	c.(1312-1314)CAT>CGT	p.H438R		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	438						nucleus	DNA binding			central_nervous_system(1)	1						AGCAGAGGAATGGCGTAGTCC	0.498													5	2					0	0	0.000157383	0	0
GCK	2645	broad.mit.edu	37	7	44190561	44190561	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:44190561G>A	uc003tkl.2	-	4	947	c.477C>T	c.(475-477)ATC>ATT	p.I159I	GCK_uc003tkj.1_Silent_p.I158I|GCK_uc003tkk.1_Silent_p.I160I	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	159					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CCACCTTATCGATGTCTTCGT	0.567													136	162					0	0	0.000781405	0	0
NPC1L1	29881	broad.mit.edu	37	7	44576027	44576027	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:44576027C>T	uc003tlb.2	-	4	1738	c.1682G>A	c.(1681-1683)GGA>GAA	p.G561E	NPC1L1_uc003tlc.2_Missense_Mutation_p.G561E|NPC1L1_uc011kbw.1_Missense_Mutation_p.G561E|NPC1L1_uc003tld.2_Missense_Mutation_p.G561E	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	561	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ATAGTCCTTTCCTGGGATAAG	0.602													36	37					0	0	0.00111076	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579685	44579685	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:44579685G>A	uc003tlb.2	-	2	367	c.311C>T	c.(310-312)TCG>TTG	p.S104L	NPC1L1_uc003tlc.2_Missense_Mutation_p.S104L|NPC1L1_uc011kbw.1_Missense_Mutation_p.S104L|NPC1L1_uc003tld.2_Missense_Mutation_p.S104L	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	104	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CTTGGTGATCGACAGACTCGC	0.587													12	22					0	0	0.000308642	0	0
PKD1L1	168507	broad.mit.edu	37	7	47851482	47851482	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:47851482G>A	uc003tny.1	-	50	7514	c.7514C>T	c.(7513-7515)TCC>TTC	p.S2505F	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.S232F	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2505	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CTCCACCAGGGATGAGGGGAC	0.592													4	6					0	0	0.00024832	0	0
PKD1L1	168507	broad.mit.edu	37	7	47921678	47921678	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:47921678C>T	uc003tny.1	-	20	3271	c.3271G>A	c.(3271-3273)GAC>AAC	p.D1091N		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1091	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AAGCTGGTGTCCTTAGCTAGG	0.453													18	34					0	0	0.00188189	0	0
CDC14C	168448	broad.mit.edu	37	7	48965380	48965380	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:48965380C>T	uc010kyv.1	+	1	1224	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GATGACATTTCCATAAATGGG	0.483													8	16					0	0	0.000157383	0	0
EGFR	1956	broad.mit.edu	37	7	55268067	55268067	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:55268067C>T	uc003tqk.2	+	24	3153	c.2907C>T	c.(2905-2907)TCC>TCT	p.S969S	EGFR_uc010kzg.1_Silent_p.S924S|EGFR_uc011kco.1_Silent_p.S916S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	969	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCGAATTCTCCAAAATGGCCC	0.483		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			36	41					0	0	0.00222228	0	0
LOC643955	643955	broad.mit.edu	37	7	62758725	62758725	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:62758725C>T	uc011kdj.1	-	2	153	c.85G>A	c.(85-87)GAA>AAA	p.E29K		NR_003952				Homo sapiens cDNA clone IMAGE:30377995, containing frame-shift errors.												0						CATTGCCATTCCTCCAGAGAG	0.418													14	15					0	0	0.000422831	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130396	71130396	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:71130396G>A	uc003tvy.2	+	7	1081	c.1081G>A	c.(1081-1083)GTA>ATA	p.V361I	WBSCR17_uc003tvz.2_Missense_Mutation_p.V60I	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	361	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GTACCCCTAGGTATGGCTCTG	0.502													47	52					0	0	0.000781405	0	0
MLXIPL	51085	broad.mit.edu	37	7	73013866	73013866	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:73013866C>T	uc003tyn.1	-	8	1109	c.1061G>A	c.(1060-1062)AGC>AAC	p.S354N	MLXIPL_uc003tyj.1_5'Flank|MLXIPL_uc003tyk.1_Missense_Mutation_p.S354N|MLXIPL_uc003tyl.1_Missense_Mutation_p.S354N|MLXIPL_uc003tym.1_Missense_Mutation_p.S354N|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.S261N|MLXIPL_uc003tyq.1_Missense_Mutation_p.S96N	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	354					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTGCAGACGGCTGTGTCCAGA	0.602													17	48					0	0	0.00074312	0	0
HIP1	3092	broad.mit.edu	37	7	75182832	75182833	+	Silent	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:75182832_75182833GG>AA	uc003uds.1	-	22	2255_2256	c.2214_2215CC>TT	c.(2212-2217)TCCCTG>TCTTTG	p.738_739SL>SL	HIP1_uc011kfz.1_Silent_p.615_616SL>SL	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	738_739					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						TCTTCCTCCAGGGAGGCCAGGT	0.495			T	PDGFRB	CMML								38	36					0	0	6.4e-05	0	0
CACNA2D1	781	broad.mit.edu	37	7	81600048	81600048	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:81600048C>T	uc003uhr.1	-	27	2403	c.2147G>A	c.(2146-2148)GGA>GAA	p.G716E	CACNA2D1_uc011kgy.1_5'UTR	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	728	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TGCTTTCACTCCCTTGCTGAA	0.338													13	19					0	0	0.000566183	0	0
PCLO	27445	broad.mit.edu	37	7	82435017	82435017	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:82435017G>A	uc003uhx.2	-	21	15209	c.14920C>T	c.(14920-14922)CCT>TCT	p.P4974S		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4897					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTCGGAATAGGAAATAGATTA	0.473													6	7					0	0	0.00198382	0	0
PCLO	27445	broad.mit.edu	37	7	82545171	82545171	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:82545171C>T	uc003uhx.2	-	7	12420	c.12131G>A	c.(12130-12132)CGA>CAA	p.R4044Q	PCLO_uc003uhv.2_Missense_Mutation_p.R4044Q|PCLO_uc010lec.2_Missense_Mutation_p.R1009Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3975					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GACATAATTTCGTGGAGTATG	0.408													7	5					0	0	0.00198382	0	0
PCLO	27445	broad.mit.edu	37	7	82579434	82579434	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:82579434C>T	uc003uhx.2	-	6	10759	c.10470G>A	c.(10468-10470)AGG>AGA	p.R3490R	PCLO_uc003uhv.2_Silent_p.R3490R|PCLO_uc010lec.2_Silent_p.R455R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3421					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CACGAGCTTTCCTCCTTGATC	0.458													17	26					0	0	0.00121646	0	0
GRM3	2913	broad.mit.edu	37	7	86394850	86394850	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:86394850G>A	uc003uid.2	+	2	1488	c.389G>A	c.(388-390)GGA>GAA	p.G130E	GRM3_uc010lef.2_Missense_Mutation_p.G128E|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	130	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGTCCTGATGGATCCTATGCC	0.428													6	6					0	0	0.00116845	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99117481	99117481	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:99117481C>T	uc003uqv.2	+	4	709	c.585C>T	c.(583-585)CCC>CCT	p.P195P	ZKSCAN5_uc010lfx.2_Silent_p.P195P|ZKSCAN5_uc003uqw.2_Silent_p.P195P|ZKSCAN5_uc003uqx.2_Intron|ZKSCAN5_uc003uqy.2_5'UTR	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	195					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CTTCCCTTCCCCTGAAGGACA	0.532													38	55					0	0	0.000781405	0	0
CYP3A43	64816	broad.mit.edu	37	7	99457461	99457461	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:99457461G>A	uc003urx.1	+	10	977	c.874G>A	c.(874-876)GAT>AAT	p.D292N	CYP3A43_uc003ury.1_Missense_Mutation_p.D292N|CYP3A43_uc003urz.1_Missense_Mutation_p.D292N|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Missense_Mutation_p.D182N|CYP3A43_uc003usb.1_Missense_Mutation_p.D152N	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	292			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AGCTCTGTCTGATCTGGAGCT	0.433													62	69					0	0	0.000781405	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99662229	99662229	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:99662229G>A	uc003uso.2	+	4	1555	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	ZSCAN21_uc003usn.1_Silent_p.E435E|ZNF3_uc003usp.2_3'UTR	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	471					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGGAGAGGGAGAAGCACCGTA	0.468													24	39					0	0	0.00278032	0	0
AGFG2	3268	broad.mit.edu	37	7	100162594	100162594	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:100162594A>G	uc003uvf.2	+	12	1562	c.1426A>G	c.(1426-1428)ACC>GCC	p.T476A	AGFG2_uc010lgy.2_3'UTR	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	476					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						CAAACCTCCAACCACCAACCC	0.532													75	130					0	0	0.000781405	0	0
LRCH4	4034	broad.mit.edu	37	7	100174612	100174612	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:100174612T>A	uc003uvj.2	-	13	1434	c.1381A>T	c.(1381-1383)AGT>TGT	p.S461C	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	461					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGGGAGGCACTGGACTTAGGC	0.632													6	5					0	0	0.00116845	0	0
LRCH4	4034	broad.mit.edu	37	7	100175319	100175320	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:100175319_100175320GG>AA	uc003uvj.2	-	9	1136_1137	c.1083_1084CC>TT	c.(1081-1086)GTCCCC>GTTTCC	p.P362S	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	362					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCTCCCCGGGGACATGGCTGT	0.663													45	74					0	0	6.4e-05	0	0
MLL5	55904	broad.mit.edu	37	7	104741913	104741913	+	Silent	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:104741913T>C	uc003vcm.2	+	16	2298	c.1764T>C	c.(1762-1764)TTT>TTC	p.F588F	MLL5_uc010ljc.2_Silent_p.F588F|MLL5_uc010lje.1_RNA	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	588	Potential.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TGCAAGCTTTTGCCAGACTTG	0.313													30	39					0	0	0.00209593	0	0
SLC26A4	5172	broad.mit.edu	37	7	107350632	107350632	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:107350632C>T	uc003vep.2	+	19	2447	c.2223C>T	c.(2221-2223)TCC>TCT	p.S741S	SLC26A4_uc011kmb.1_Silent_p.S328S|SLC26A4_uc011kmc.1_Silent_p.S302S|SLC26A4_uc011kmd.1_Silent_p.S310S	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	741	Cytoplasmic (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						GTCAAGGTTCCATTTTAGAAA	0.333									Pendred_syndrome				15	24					0	0	0.000958276	0	0
GPR85	54329	broad.mit.edu	37	7	112724689	112724689	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:112724689T>A	uc010ljv.2	-	2	605	c.88A>T	c.(88-90)ATA>TTA	p.I30L	GPR85_uc003vgp.1_Missense_Mutation_p.I30L|GPR85_uc003vgq.2_Missense_Mutation_p.I30L|GPR85_uc010ljw.1_Missense_Mutation_p.I30L	NM_001146266	NP_001139738	P60893	GPR85_HUMAN	G protein-coupled receptor 85	30	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)	2						ACTCCTATTATGAAACCCAAG	0.453													17	37					0	0	0.000958276	0	0
ASB15	142685	broad.mit.edu	37	7	123268983	123268983	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:123268983T>G	uc003vku.1	+	10	1227	c.935T>G	c.(934-936)ATT>AGT	p.I312S	ASB15_uc003vkw.1_Missense_Mutation_p.I312S	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	312	ANK 6.				intracellular signal transduction					skin(2)|lung(1)	3						CTAACACCAATTCACTCAGCA	0.383													18	23					0	0	0.000958276	0	0
HYAL4	23553	broad.mit.edu	37	7	123508836	123508836	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:123508836T>C	uc003vlc.2	+	3	1147	c.509T>C	c.(508-510)CTT>CCT	p.L170P	HYAL4_uc011knz.1_Missense_Mutation_p.L170P	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	170	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TCAAGAAAGCTTATTTCCGAT	0.403													32	42					0	0	0.0024448	0	0
GRM8	2918	broad.mit.edu	37	7	126173552	126173552	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:126173552C>T	uc003vlr.2	-	8	2195	c.1884G>A	c.(1882-1884)GGG>GGA	p.G628G	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.G628G|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	628	Helical; Name=2; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGAGAAAAATCCCCGTTAGGA	0.463										HNSCC(24;0.065)			12	22					0	0	0.00136819	0	0
TNPO3	23534	broad.mit.edu	37	7	128641228	128641228	+	Missense_Mutation	SNP	G	A	A	rs11538883		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:128641228G>A	uc003vol.1	-	6	1131	c.757C>T	c.(757-759)CTC>TTC	p.L253F	TNPO3_uc003vom.1_Missense_Mutation_p.L187F|TNPO3_uc010lly.1_Missense_Mutation_p.L253F|TNPO3_uc010llz.1_Missense_Mutation_p.L253F	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	253					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						ATGGCATAGAGAGCTGAGCAT	0.488													74	127					0	0	0.000781405	0	0
SMO	6608	broad.mit.edu	37	7	128845089	128845089	+	Missense_Mutation	SNP	G	A	A	rs138284001		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:128845089G>A	uc003vor.2	+	3	863	c.583G>A	c.(583-585)GTG>ATG	p.V195M	SMO_uc003vos.2_5'Flank	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	195	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						CCAGTGCGAAGTGCCCTTGGT	0.582			Mis		skin basal cell 								20	29					0	0	0.00188189	0	0
KIAA1549	57670	broad.mit.edu	37	7	138602208	138602208	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:138602208A>C	uc011kql.1	-	2	2213	c.2164T>G	c.(2164-2166)TTC>GTC	p.F722V	KIAA1549_uc003vuk.3_Missense_Mutation_p.F672V|KIAA1549_uc011kqj.1_Missense_Mutation_p.F722V	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	722	Ser-rich.					integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TCAGAAGGGAAGCTTGACCAT	0.463			O	BRAF	pilocytic astrocytoma								39	54					0	0	0.00111076	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603468	138603468	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:138603468G>A	uc011kql.1	-	2	953	c.904C>T	c.(904-906)CCC>TCC	p.P302S	KIAA1549_uc003vuk.3_Missense_Mutation_p.P252S|KIAA1549_uc011kqj.1_Missense_Mutation_p.P302S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	302						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCCAAGGAGGGCAACGGTATA	0.522			O	BRAF	pilocytic astrocytoma								16	34					0	0	0.000308642	0	0
TBXAS1	6916	broad.mit.edu	37	7	139655310	139655310	+	Missense_Mutation	SNP	C	T	T	rs138612126	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:139655310C>T	uc011kqv.1	+	8	897	c.733C>T	c.(733-735)CCG>TCG	p.P245S	TBXAS1_uc003vvh.2_Missense_Mutation_p.P199S|TBXAS1_uc010lne.2_Missense_Mutation_p.P131S|TBXAS1_uc011kqu.1_Missense_Mutation_p.P150S|TBXAS1_uc003vvi.2_Missense_Mutation_p.P199S|TBXAS1_uc003vvj.2_Missense_Mutation_p.P199S|TBXAS1_uc011kqw.1_Missense_Mutation_p.P179S	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	198	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CTTTGGCACCCCGGTGGACTC	0.547													32	49					0	0	0.00209593	0	0
RAB19	401409	broad.mit.edu	37	7	140125836	140125836	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:140125836C>T	uc010lni.2	+	4	738	c.540C>T	c.(538-540)ATC>ATT	p.I180I	RAB19_uc011krc.1_Silent_p.I180I	NM_001008749	NP_001008749	A4D1S5	RAB19_HUMAN	RAB19, member RAS oncogene family	180					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0	Melanoma(164;0.0142)					AGGAGCTGATCGCGCGCAACA	0.577													36	44					0	0	0.000692331	0	0
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:140481411C>T	uc003vwc.3	-	11	1458	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	466	ATP (By similarity).|Protein kinase.		G -> V (in LNCR).|G -> A (in melanoma).|G -> E (in melanoma).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.G466V(12)|p.G466E(5)|p.G466A(3)|p.G466R(2)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCCAAATGATCCAGATCCAAT	0.378	G466V(NCIH1666_LUNG)|G466V(CAL12T_LUNG)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				36	47					0	0	0.000814825	0	0
MGAM	8972	broad.mit.edu	37	7	141740634	141740634	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:141740634C>T	uc003vwy.2	+	21	2540	c.2486C>T	c.(2485-2487)ACC>ATC	p.T829I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	829	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCAAATACAACCACTCTGGCC	0.448													5	9					0	0	0.000157383	0	0
MGAM	8972	broad.mit.edu	37	7	141765211	141765211	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:141765211G>A	uc003vwy.2	+	38	4615	c.4561G>A	c.(4561-4563)GGA>AGA	p.G1521R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1521	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCGCTGGGCAGGACATTGGCT	0.622													4	2					0	0	0.00116845	0	0
PRSS1	5644	broad.mit.edu	37	7	142459835	142459835	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:142459835G>A	uc003wak.2	+	3	428	c.411G>A	c.(409-411)ACG>ACA	p.T137T	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.T77T	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	137	Peptidase S1.		T -> M (in a colorectal cancer sample; somatic mutation).		digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity	p.T137M(1)		large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCACTGGCACGAAGTGCCTCA	0.552									Hereditary_Pancreatitis				26	41					0	0	0.00106085	0	0
PIP	5304	broad.mit.edu	37	7	142836727	142836727	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:142836727G>A	uc003wcf.1	+	4	469	c.433G>A	c.(433-435)GTA>ATA	p.V145I		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	145						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		AATCCTAAAGGTAGAATAATG	0.408													69	83					0	0	0.000781405	0	0
OR2F2	135948	broad.mit.edu	37	7	143633090	143633090	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:143633090G>A	uc011ktv.1	+	1	765	c.765G>A	c.(763-765)ACG>ACA	p.T255T		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ACGGCACAACGATTTTCACTT	0.512													26	43					0	0	0.00106085	0	0
OR2F1	26211	broad.mit.edu	37	7	143657367	143657367	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:143657367T>A	uc003wds.1	+	1	348	c.304T>A	c.(304-306)TTT>ATT	p.F102I		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AGCCCAGTTATTTTTCTCCCT	0.527													46	60					0	0	0.000781405	0	0
OR2A5	393046	broad.mit.edu	37	7	143747613	143747613	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:143747613G>A	uc011ktw.1	+	1	119	c.119G>A	c.(118-120)GGA>GAA	p.G40E		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ACCCTGCTGGGAAATGGGGCC	0.512													30	28					0	0	0.001512	0	0
OR2A25	392138	broad.mit.edu	37	7	143771381	143771381	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:143771381G>A	uc011ktx.1	+	1	69	c.69G>A	c.(67-69)CAG>CAA	p.Q23Q		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CAAGGATTCAGATGCTCCTCT	0.517													22	42					0	0	0.00188189	0	0
SSPO	23145	broad.mit.edu	37	7	149477424	149477424	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:149477424G>A	uc010lpk.2	+	12	1495	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	499	TIL 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTCCTGCAGGGAAGAGTGTGT	0.677													4	5					0	0	0.00024832	0	0
SSPO	23145	broad.mit.edu	37	7	149510776	149510776	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:149510776C>T	uc010lpk.2	+	72	10061	c.10061C>T	c.(10060-10062)TCC>TTC	p.S3354F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3354	TIL 5.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTACTGAGTTCCAACGGGGCC	0.667													10	5					0	0	0.000673444	0	0
SSPO	23145	broad.mit.edu	37	7	149516409	149516409	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:149516409C>T	uc010lpk.2	+	85	11812	c.11812C>T	c.(11812-11814)CCT>TCT	p.P3938S	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3938					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCCCGTGTGCCCTGGCCCTGG	0.687													13	25					0	0	0.000422831	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269457	150269457	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:150269457C>T	uc003whl.2	+	3	381	c.299C>T	c.(298-300)TCC>TTC	p.S100F	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Missense_Mutation_p.S114F	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	100							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCTGAAACGTCCAAGGAGATT	0.517													22	18					0	0	0.00188189	0	0
KCNH2	3757	broad.mit.edu	37	7	150648096	150648096	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:150648096G>A	uc003wic.2	-	8	2071	c.2058C>T	c.(2056-2058)TTC>TTT	p.F686F	KCNH2_uc003wib.2_Silent_p.F346F|KCNH2_uc011kux.1_Silent_p.F590F|KCNH2_uc003wid.2_Silent_p.F346F|KCNH2_uc003wie.2_Silent_p.F686F	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	686	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGATCTGGTGGAAGCGGATGA	0.632													16	21					0	0	0.000308642	0	0
MLL3	58508	broad.mit.edu	37	7	151879201	151879201	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr7:151879201G>A	uc003wla.2	-	36	5963	c.5744C>T	c.(5743-5745)TCC>TTC	p.S1915F	MLL3_uc003wkz.2_Missense_Mutation_p.S976F	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1915	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTTCTTCTGGAAAAACTATG	0.473			N		medulloblastoma								41	55					0	0	0.00148497	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													5	41					0	0	0.000157383	0	0
CSMD1	64478	broad.mit.edu	37	8	2800094	2800094	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:2800094G>A	uc011kwk.1	-	69	10828	c.10438C>T	c.(10438-10440)CAT>TAT	p.H3480Y	CSMD1_uc011kwj.1_Missense_Mutation_p.H2794Y|CSMD1_uc010lrg.2_Missense_Mutation_p.H1371Y	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3480	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCGTGGTAATGACTGGAAGAG	0.383													7	8					0	0	0.00198382	0	0
CSMD1	64478	broad.mit.edu	37	8	3046477	3046477	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:3046477G>A	uc011kwk.1	-	35	5848	c.5458C>T	c.(5458-5460)CCT>TCT	p.P1820S	CSMD1_uc011kwj.1_Missense_Mutation_p.P1212S|CSMD1_uc003wqe.2_Missense_Mutation_p.P976S|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1820	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TATGGCTCAGGGTAGCCGGGG	0.473													10	11					0	0	0.000442599	0	0
CSMD1	64478	broad.mit.edu	37	8	3165304	3165304	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:3165304C>T	uc011kwk.1	-	25	4256	c.3866G>A	c.(3865-3867)CGA>CAA	p.R1289Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R681Q|CSMD1_uc003wqe.2_Missense_Mutation_p.R445Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1289	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGACAATATTCGTCCTGATGT	0.478													30	45					0	0	0.00127121	0	0
XKR5	389610	broad.mit.edu	37	8	6690262	6690262	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:6690262G>A	uc003wqp.2	-	2	241	c.219C>T	c.(217-219)CTC>CTT	p.L73L	XKR5_uc003wqq.2_5'UTR|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	73						integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		CAAGCTGTAGGAGGTGCAGCA	0.552													34	49					0	0	0.00170553	0	0
DEFA5	1670	broad.mit.edu	37	8	6914065	6914065	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:6914065G>A	uc003wra.1	-	1	195	c.155C>T	c.(154-156)TCT>TTT	p.S52F		NM_021010	NP_066290	Q01523	DEF5_HUMAN	defensin, alpha 5 preproprotein	52					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		TCTAAGAGCAGAGAGTCCATT	0.388													56	63					0	0	0.000781405	0	0
RP1L1	94137	broad.mit.edu	37	8	10465954	10465954	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:10465954G>A	uc003wtc.2	-	4	5883	c.5654C>T	c.(5653-5655)CCA>CTA	p.P1885L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1885					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTCTGACTCTGGCTGGGCCTC	0.627													66	72					0	0	0.000781405	0	0
RP1L1	94137	broad.mit.edu	37	8	10466594	10466595	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:10466594_10466595GG>AA	uc003wtc.2	-	4	5242_5243	c.5013_5014CC>TT	c.(5011-5016)TCCCCC>TCTTCC	p.P1672S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1672					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTGGCCTTGGGGGACATAGGGC	0.629													23	39					0	0	6.4e-05	0	0
LONRF1	91694	broad.mit.edu	37	8	12600738	12600738	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:12600738G>A	uc003wwd.1	-	2	838	c.775C>T	c.(775-777)CAA>TAA	p.Q259*	LONRF1_uc010lsp.1_5'UTR	NM_152271	NP_689484	Q17RB8	LONF1_HUMAN	LON peptidase N-terminal domain and ring finger	259	TPR 3.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(644;0.236)		TTAAACTCTTGGAGACCAGCA	0.294													11	14					0	0	0.00136819	0	0
SLC18A1	6570	broad.mit.edu	37	8	20022597	20022598	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:20022597_20022598AG>TA	uc011kyq.1	-	10	1350_1351	c.879_880CT>TA	c.(877-882)CTCTTT>CTTATT	p.F294I	SLC18A1_uc003wzl.2_Missense_Mutation_p.F81I|SLC18A1_uc003wzm.2_Missense_Mutation_p.F294I|SLC18A1_uc011kyr.1_Missense_Mutation_p.F294I|SLC18A1_uc003wzn.2_Missense_Mutation_p.F294I|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.F294I	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	294	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		AGAAGCATAAAGAGGGGAGTCC	0.455													28	33					0	0	6.4e-05	0	0
BMP1	649	broad.mit.edu	37	8	22052092	22052092	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:22052092C>T	uc003xbg.2	+	11	1676	c.1432C>T	c.(1432-1434)CAG>TAG	p.Q478*	BMP1_uc003xba.2_Nonsense_Mutation_p.Q478*|BMP1_uc003xbb.2_Nonsense_Mutation_p.Q478*|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Nonsense_Mutation_p.Q227*|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Nonsense_Mutation_p.Q227*|BMP1_uc011kzc.1_Nonsense_Mutation_p.Q227*|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	478	CUB 2.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		CCTCACATTCCAGTCCTTTGA	0.582													26	39					0	0	0.00178596	0	0
EGR3	1960	broad.mit.edu	37	8	22548290	22548290	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:22548290C>T	uc003xcm.1	-	2	1218	c.860G>A	c.(859-861)AGC>AAC	p.S287N	EGR3_uc011kzn.1_Missense_Mutation_p.S249N|EGR3_uc011kzo.1_Missense_Mutation_p.S233N	NM_004430	NP_004421	Q06889	EGR3_HUMAN	early growth response 3	287	C2H2-type 1.				circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		GTCCGAACGGCTGAAACGGCG	0.697													22	31					0	0	0.00188189	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	22995438	22995438	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:22995438G>A	uc003xcz.1	-	9	1198	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	369	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GAGCTTTTCGGAGCCCACCAG	0.473													25	20					0	0	0.000586117	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24254924	24254924	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:24254924G>A	uc003xdz.2	+	6	802	c.582G>A	c.(580-582)GGG>GGA	p.G194G	ADAMDEC1_uc010lub.2_Silent_p.G115G|ADAMDEC1_uc011lab.1_Silent_p.G115G	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	194					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GCACTGACGGGAAACAAGGCC	0.448													18	32					0	0	0.00152264	0	0
ADRA1A	148	broad.mit.edu	37	8	26623610	26623610	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:26623610C>T	uc003xfg.1	-	3	1762	c.1326G>A	c.(1324-1326)GTG>GTA	p.V442V	ADRA1A_uc003xfc.1_Intron|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Intron|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron	NM_033304	NP_150647	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 4	Error:Variant_position_missing_in_P35348_after_alignment					activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	TCATAAAATTCACATGCTTGA	0.443													28	46					0	0	0.00106085	0	0
ADRA1A	148	broad.mit.edu	37	8	26721843	26721843	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:26721843C>T	uc003xfh.1	-	1	1080	c.644G>A	c.(643-645)AGC>AAC	p.S215N	ADRA1A_uc003xfc.1_Missense_Mutation_p.S215N|ADRA1A_uc010lul.1_Missense_Mutation_p.S215N|ADRA1A_uc003xfd.1_RNA|ADRA1A_uc003xfe.1_Missense_Mutation_p.S215N|ADRA1A_uc010lum.1_Missense_Mutation_p.S215N|ADRA1A_uc003xff.1_RNA|ADRA1A_uc003xfg.1_Missense_Mutation_p.S215N	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	215	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	GAGGCCCCGGCTCTCCCTCTT	0.637													9	12					0	0	0.000442599	0	0
KIF13B	23303	broad.mit.edu	37	8	29033619	29033619	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:29033619G>A	uc003xhh.3	-	10	970	c.911C>T	c.(910-912)CCA>CTA	p.P304L	KIF13B_uc003xhj.2_Missense_Mutation_p.P201L|KIF13B_uc010lvf.1_Missense_Mutation_p.P240L	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	304					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		GTCACGATATGGAACAAATTT	0.428													8	22					0	0	0.000274275	0	0
TMEM66	51669	broad.mit.edu	37	8	29931525	29931525	+	Silent	SNP	G	A	A	rs80342246		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:29931525G>A	uc003xhs.2	-	2	334	c.150C>T	c.(148-150)GAC>GAT	p.D50D	TMEM66_uc003xht.2_Silent_p.D50D|TMEM66_uc003xhu.2_Silent_p.D14D|TMEM66_uc003xhv.2_Intron	NM_016127	NP_057211	Q96BY9	TMM66_HUMAN	transmembrane protein 66 precursor	50						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.0993)|Kidney(114;0.119)		TGGTATAGCGGTCATAGTGGA	0.468													30	56					0	0	0.001512	0	0
UBXN8	7993	broad.mit.edu	37	8	30623851	30623851	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:30623851G>A	uc003xii.2	+	10	771	c.754G>A	c.(754-756)GAC>AAC	p.D252N	UBXN8_uc010lvi.2_3'UTR|UBXN8_uc011lbb.1_RNA|UBXN8_uc003xij.2_RNA	NM_005671	NP_005662	O00124	UBXN8_HUMAN	reproduction 8	252	UBX.				single fertilization						0						GTCGCTGGAGGACATAGGAAT	0.507													13	17					0	0	0.00185496	0	0
FUT10	84750	broad.mit.edu	37	8	33230301	33230301	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:33230301C>T	uc003xje.2	-	5	1590	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K	FUT10_uc003xjc.2_Missense_Mutation_p.E419K|FUT10_uc003xjd.2_Missense_Mutation_p.E384K|FUT10_uc011lbi.1_Missense_Mutation_p.E462K	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	412	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		TCTTCTGCCTCCCATCTTTTG	0.453													16	14					0	0	0.000566183	0	0
LOC728024	728024	broad.mit.edu	37	8	37604959	37604959	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:37604959C>T	uc010lvx.1	-	1	563	c.417G>A	c.(415-417)CAG>CAA	p.Q139Q	ERLIN2_uc003xke.3_Intron	NR_003671				SubName: Full=cDNA FLJ38978 fis, clone NT2RI2004209; SubName: Full=Chromosome X open reading frame 56, isoform CRA_b; SubName: Full=Putative uncharacterized protein CXorf56;												0						TGCGCTCCAGCTGTTTTTCAA	0.478													44	91					0	0	0.000781405	0	0
BRF2	55290	broad.mit.edu	37	8	37702229	37702229	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:37702229G>A	uc003xkk.2	-	4	1149	c.1039C>T	c.(1039-1041)CAG>TAG	p.Q347*		NM_018310	NP_060780	Q9HAW0	BRF2_HUMAN	RNA polymerase III transcription initiation	347					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter|transcription initiation, DNA-dependent	nucleoplasm	protein binding|zinc ion binding				0		Lung NSC(58;0.118)|all_lung(54;0.195)	BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;1.81e-10)			CGCTTCCCCTGGGGTAAACCT	0.617													20	21					0	0	0.00152264	0	0
ADAM32	203102	broad.mit.edu	37	8	39091502	39091502	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:39091502C>T	uc003xmt.3	+	16	1964	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F	ADAM32_uc011lch.1_Silent_p.F474F|ADAM32_uc003xmu.3_Silent_p.F467F|ADAM32_uc003xmv.2_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	573	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTTATGCTTTCGTACGAGATT	0.393													5	8					0	0	0.000602214	0	0
IDO1	3620	broad.mit.edu	37	8	39785614	39785614	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:39785614G>A	uc003xnm.2	+	10	1236	c.1122G>A	c.(1120-1122)CTG>CTA	p.L374L	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	374					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	CTTCAAAACTGGAAGCCAAAG	0.438													10	14					0	0	0.000978159	0	0
ANK1	286	broad.mit.edu	37	8	41530158	41530158	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:41530158C>T	uc003xok.2	-	38	4894	c.4810G>A	c.(4810-4812)GGG>AGG	p.G1604R	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.G1604R|ANK1_uc003xoj.2_Missense_Mutation_p.G1604R|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Missense_Mutation_p.G1645R	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1604	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GAGAGTGCCCCCTCCAACTTC	0.582													45	68					0	0	0.000781405	0	0
MYST3	7994	broad.mit.edu	37	8	41792309	41792309	+	Silent	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:41792309G>T	uc010lxb.2	-	18	3973	c.3429C>A	c.(3427-3429)TCC>TCA	p.S1143S	MYST3_uc010lxc.2_Silent_p.S1143S|MYST3_uc003xon.3_Silent_p.S1143S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1143					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TCAAAGGTGTGGATGTATCTG	0.418													9	367					0.00136819	0.00610585	0.00136819	1	0
PRKDC	5591	broad.mit.edu	37	8	48815190	48815190	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:48815190G>A	uc003xqi.2	-	27	3265	c.3208C>T	c.(3208-3210)CCC>TCC	p.P1070S	PRKDC_uc003xqj.2_Missense_Mutation_p.P1070S|PRKDC_uc011ldh.1_Missense_Mutation_p.P1070S	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1070					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AAAGCATTGGGGTGAAGCGCA	0.428								NHEJ					14	19					0	0	0.000422831	0	0
RP1	6101	broad.mit.edu	37	8	55541024	55541024	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:55541024A>T	uc003xsd.1	+	4	4730	c.4582A>T	c.(4582-4584)ATC>TTC	p.I1528F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1528					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTATGAAATAATCAGTAAGAG	0.328													14	13					0	0	0.000308642	0	0
RP1	6101	broad.mit.edu	37	8	55541533	55541533	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:55541533G>A	uc003xsd.1	+	4	5239	c.5091G>A	c.(5089-5091)CAG>CAA	p.Q1697Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1697					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGGAATTCCAGGAGGAAAGAC	0.403													27	49					0	0	0.00127121	0	0
RP1	6101	broad.mit.edu	37	8	55541975	55541975	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:55541975G>A	uc003xsd.1	+	4	5681	c.5533G>A	c.(5533-5535)GAA>AAA	p.E1845K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1845					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTGTGCCAAGGAAAGAATAGC	0.403													17	19					0	0	0.000566183	0	0
PLAG1	5324	broad.mit.edu	37	8	57080812	57080813	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:57080812_57080813GG>AA	uc003xsq.3	-	2	467_468	c.16_17CC>TT	c.(16-18)CCT>TTT	p.P6F	PLAG1_uc003xsr.3_Missense_Mutation_p.P6F|PLAG1_uc010lyi.2_Missense_Mutation_p.P6F|PLAG1_uc010lyj.2_Intron	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	6	Interacts with KPNA2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			CAAATCACCAGGAATGACAGTG	0.46			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								4	23					0	0	6.4e-05	0	0
BHLHE22	27319	broad.mit.edu	37	8	65493514	65493514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:65493514C>T	uc003xvi.2	+	1	701	c.167C>T	c.(166-168)TCC>TTC	p.S56F	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	56	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CGCCCGGCGTCCTCCTCCTCG	0.667													6	13					0	0	0.000157383	0	0
TRIM55	84675	broad.mit.edu	37	8	67086746	67086746	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:67086746C>T	uc003xvv.2	+	10	1791	c.1565C>T	c.(1564-1566)GCT>GTT	p.A522V	TRIM55_uc003xvu.2_3'UTR|TRIM55_uc003xvw.2_Missense_Mutation_p.A426V|TRIM55_uc003xvx.2_Missense_Mutation_p.A215V	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	522						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CAGGCTGCAGCTCCAGCGAGT	0.478													21	55					0	0	0.00229938	0	0
PREX2	80243	broad.mit.edu	37	8	68992720	68992720	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:68992720G>T	uc003xxv.1	+	16	1712	c.1685G>T	c.(1684-1686)CGT>CTT	p.R562L	PREX2_uc003xxu.1_Missense_Mutation_p.R562L|PREX2_uc011lez.1_Missense_Mutation_p.R497L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	562	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTACTTTTCCGTTTTTTTTCG	0.328													16	40					1.15919e-05	5.20704e-05	0.00121646	1	0
PREX2	80243	broad.mit.edu	37	8	69009299	69009299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:69009299G>A	uc003xxv.1	+	22	2443	c.2416G>A	c.(2416-2418)GAG>AAG	p.E806K	PREX2_uc003xxu.1_Missense_Mutation_p.E806K|PREX2_uc011lez.1_Missense_Mutation_p.E741K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	806					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGGGAAGAAGGAGCATGTGAG	0.423													8	16					0	0	0.000274275	0	0
PRDM14	63978	broad.mit.edu	37	8	70981495	70981495	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:70981495C>A	uc003xym.2	-	2	803	c.601G>T	c.(601-603)GAC>TAC	p.D201Y		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	201					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			AAGTGCAGGTCCTCCTCCGTG	0.602													32	29					4.31634e-10	1.95744e-09	0.0024448	1	0
STAU2	27067	broad.mit.edu	37	8	74464404	74464404	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:74464404G>A	uc003xzm.2	-	13	1609	c.1373C>T	c.(1372-1374)TCG>TTG	p.S458L	STAU2_uc011lfg.1_Missense_Mutation_p.S286L|STAU2_uc003xzn.2_Missense_Mutation_p.S426L|STAU2_uc011lfh.1_Missense_Mutation_p.S354L|STAU2_uc003xzo.2_Missense_Mutation_p.S458L|STAU2_uc003xzp.2_Missense_Mutation_p.S426L|STAU2_uc011lfi.1_Missense_Mutation_p.S420L|STAU2_uc003xzq.2_Missense_Mutation_p.S238L|STAU2_uc010lzk.2_Missense_Mutation_p.S426L|STAU2_uc010lzl.1_Missense_Mutation_p.S286L	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	458	Required for dendritic transport (By similarity).				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TGAACTATTCGATGTGGGAGA	0.443													42	69					0	0	0.000781405	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886022	88886023	+	Nonsense_Mutation	DNP	GG	AA	AA	rs148443990	byFrequency	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:88886022_88886023GG>AA	uc003ydz.2	-	1	274_275	c.177_178CC>TT	c.(175-180)GTCCAG>GTTTAG	p.Q60*		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	60										ovary(1)	1						CTATGAATCTGGACCTTTTTCC	0.505													24	41					0	0	6.4e-05	0	0
DPY19L4	286148	broad.mit.edu	37	8	95800231	95800232	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:95800231_95800232CC>AA	uc003ygx.2	+	18	2082_2083	c.1958_1959CC>AA	c.(1957-1959)CCC>CAA	p.P653Q		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	653						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GAGGTGGGACCCATGAGAGGCT	0.317													10	373					0	0	6.4e-05	0	0
SPAG1	6674	broad.mit.edu	37	8	101178046	101178046	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:101178046G>T	uc003yjh.1	+	3	231	c.145G>T	c.(145-147)GGT>TGT	p.G49C	SPAG1_uc003yjg.1_Missense_Mutation_p.G49C|SPAG1_uc003yji.1_Missense_Mutation_p.G49C	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	49					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TTTAAGATCTGGTGAGGAAGG	0.418													13	29					6.31663e-08	2.84988e-07	0.000308642	1	0
DPYS	1807	broad.mit.edu	37	8	105456623	105456623	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:105456623C>T	uc003yly.3	-	4	775	c.646G>A	c.(646-648)GGC>AGC	p.G216S		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	216					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGCTCGTGGCCCTCAGGGCCT	0.527													21	22					0	0	0.00047179	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813976	106813976	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:106813976A>G	uc003ymd.2	+	8	1689	c.1666A>G	c.(1666-1668)ACA>GCA	p.T556A	ZFPM2_uc011lhs.1_Missense_Mutation_p.T287A	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	556	C2HC-type 2.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GTGTAACATAACATTCAATAA	0.473													18	27					0	0	0.00074312	0	0
ABRA	137735	broad.mit.edu	37	8	107773302	107773302	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:107773302C>T	uc003ymm.3	-	2	1163	c.1109G>A	c.(1108-1110)GGC>GAC	p.G370D		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	370	Interaction with actin (By similarity).				positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GTCATCTCGGCCTTGCCATAG	0.428													65	99					0	0	0.000781405	0	0
CSMD3	114788	broad.mit.edu	37	8	113275990	113275990	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:113275990G>T	uc003ynu.2	-	61	9899	c.9740C>A	c.(9739-9741)ACA>AAA	p.T3247K	CSMD3_uc003yns.2_Missense_Mutation_p.T2449K|CSMD3_uc003ynt.2_Missense_Mutation_p.T3207K|CSMD3_uc011lhx.1_Missense_Mutation_p.T3078K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3247	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTCGAAATTTGTTCCTTCCAG	0.453										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	9					1.52009e-12	6.919e-12	0.000308642	1	0
CSMD3	114788	broad.mit.edu	37	8	113697892	113697892	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:113697892C>T	uc003ynu.2	-	15	2384	c.2225G>A	c.(2224-2226)GGA>GAA	p.G742E	CSMD3_uc003yns.2_Missense_Mutation_p.G14E|CSMD3_uc003ynt.2_Missense_Mutation_p.G702E|CSMD3_uc011lhx.1_Missense_Mutation_p.G638E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	742	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TAAATTATTTCCATACCCTTC	0.403										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	37					0	0	0.00278032	0	0
ZHX2	22882	broad.mit.edu	37	8	123965271	123965271	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:123965271C>T	uc003ypk.1	+	3	2088	c.1521C>T	c.(1519-1521)GCC>GCT	p.A507A		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	507						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			AATCCCTTGCCAAAGACCAGT	0.567													10	15					0	0	0.000442599	0	0
TRIB1	10221	broad.mit.edu	37	8	126448340	126448340	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:126448340T>A	uc003yrx.2	+	3	1328	c.746T>A	c.(745-747)GTG>GAG	p.V249E	TRIB1_uc011lis.1_Missense_Mutation_p.V83E|TRIB1_uc010mdn.2_Missense_Mutation_p.V18E	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	249	Protein kinase.				JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			CCAGCCTACGTGAGCCCTGAG	0.527													107	185					0	0	0.000781405	0	0
ADCY8	114	broad.mit.edu	37	8	131916068	131916068	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:131916068C>T	uc003ytd.3	-	7	2117	c.1861G>A	c.(1861-1863)GGA>AGA	p.G621R	ADCY8_uc010mds.2_Missense_Mutation_p.G621R	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	621	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CTCCAGGATCCTTCAGTGAAT	0.517										HNSCC(32;0.087)			18	23					0	0	0.00074312	0	0
ADCY8	114	broad.mit.edu	37	8	132052364	132052364	+	Silent	SNP	C	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:132052364C>G	uc003ytd.3	-	1	472	c.216G>C	c.(214-216)GCG>GCC	p.A72A	ADCY8_uc010mds.2_Silent_p.A72A	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	72	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GGCCGCCGCCCGCAGGGTCCG	0.731										HNSCC(32;0.087)			2	3					0	0	6.4e-05	0	0
EFR3A	23167	broad.mit.edu	37	8	133014007	133014007	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:133014007T>C	uc003yte.2	+	20	2360	c.2159T>C	c.(2158-2160)GTT>GCT	p.V720A		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	720						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TTTCTCTAGGTTAGTAACACT	0.303													32	52					0	0	0.00058488	0	0
KCNQ3	3786	broad.mit.edu	37	8	133153402	133153402	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:133153402G>A	uc003ytj.2	-	10	1664	c.1439C>T	c.(1438-1440)GCC>GTC	p.A480V	KCNQ3_uc010mdt.2_Missense_Mutation_p.A480V	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	480					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GAAAGCGTAGGCTTTCATGCG	0.483													34	48					0	0	0.00111076	0	0
ZFAT	57623	broad.mit.edu	37	8	135614806	135614806	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:135614806C>T	uc003yup.2	-	6	1331	c.1156G>A	c.(1156-1158)GAG>AAG	p.E386K	ZFAT_uc003yun.2_Missense_Mutation_p.E374K|ZFAT_uc003yuo.2_Missense_Mutation_p.E374K|ZFAT_uc010meh.2_Missense_Mutation_p.E374K|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.E374K|ZFAT_uc010mej.2_Missense_Mutation_p.E324K|ZFAT_uc003yur.2_Missense_Mutation_p.E374K	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			TCCAAGGCCTCTTTGACCTTC	0.562													37	36					0	0	0.000781405	0	0
FAM135B	51059	broad.mit.edu	37	8	139144923	139144923	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:139144923G>A	uc003yuy.2	-	20	4305	c.4134C>T	c.(4132-4134)ATC>ATT	p.I1378I	FAM135B_uc003yux.2_Silent_p.I1279I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1378										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CGGCTCGGCCGATCAGGGTGT	0.537										HNSCC(54;0.14)			81	115					0	0	0.000781405	0	0
COL22A1	169044	broad.mit.edu	37	8	139729104	139729104	+	Silent	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:139729104A>G	uc003yvd.2	-	28	2811	c.2364T>C	c.(2362-2364)ATT>ATC	p.I788I	COL22A1_uc011ljo.1_Silent_p.I88I	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	788	Pro-rich.|Gly-rich.|Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTGCTCCCCAATTTCTCCCT	0.388										HNSCC(7;0.00092)			20	46					0	0	0.000720815	0	0
RECQL4	9401	broad.mit.edu	37	8	145737578	145737578	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:145737578C>T	uc003zdj.2	-	19	3217	c.3185G>A	c.(3184-3186)CGG>CAG	p.R1062Q		NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	1062					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CTGGCGCTCCCGGGCCTGCAC	0.662			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				4	14					0	0	0.00024832	0	0
MGC70857	414919	broad.mit.edu	37	8	145753065	145753065	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:145753065G>A	uc003zdp.1	-	3	470	c.312C>T	c.(310-312)TTC>TTT	p.F104F	LRRC24_uc003zdm.2_5'Flank|LRRC24_uc003zdn.2_5'UTR|MGC70857_uc003zdq.1_Silent_p.F96F|MGC70857_uc003zdr.1_RNA	NM_001001795	NP_001001795	Q6P1X6	CH082_HUMAN	hypothetical protein LOC414919	104											0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CGCAGCGCAGGAAGTTGCGCT	0.706													5	2					0	0	0.000602214	0	0
ZNF16	7564	broad.mit.edu	37	8	146171581	146171581	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr8:146171581G>A	uc003zet.2	-	3	199	c.12C>T	c.(10-12)CTC>CTT	p.L4L	ZNF16_uc003zeu.2_Silent_p.L4L	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		GGCGAGTTCTGAGGCTGGGCA	0.597													12	19					0	0	0.00185496	0	0
IFNA5	3442	broad.mit.edu	37	9	21304743	21304743	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:21304743G>A	uc011lnh.1	-	1	513	c.513C>T	c.(511-513)ATC>ATT	p.I171I		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	171					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGGATCTCATGATTTCTGCTC	0.398													64	23					0	0	0.000781405	0	0
TAF1L	138474	broad.mit.edu	37	9	32631150	32631150	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:32631150C>T	uc003zrg.1	-	1	4518	c.4428G>A	c.(4426-4428)GCG>GCA	p.A1476A	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1476	Bromo 1.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CATTGTAGGTCGCACTGTTTT	0.428													55	19					0	0	0.000781405	0	0
NOL6	65083	broad.mit.edu	37	9	33468751	33468751	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:33468751C>T	uc003zsz.2	-	8	1247	c.1146G>A	c.(1144-1146)CTG>CTA	p.L382L	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Silent_p.L382L|NOL6_uc010mjv.2_Silent_p.L382L|NOL6_uc011lob.1_Silent_p.L322L|NOL6_uc003ztb.1_Silent_p.L382L	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	382					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		TTGCCTCACCCAGAAACTGCA	0.527													77	15					0	0	0.000781405	0	0
PIGO	84720	broad.mit.edu	37	9	35093191	35093191	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:35093191G>T	uc003zwd.2	-	6	1351	c.955C>A	c.(955-957)CCT>ACT	p.P319T	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Missense_Mutation_p.P319T|PIGO_uc003zwf.2_Missense_Mutation_p.P319T|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	319					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTAACTTGAGGAATCACCTCT	0.522													21	4					1.85244e-09	8.39455e-09	0.00047179	1	0
FRMPD1	22844	broad.mit.edu	37	9	37740553	37740553	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:37740553G>A	uc004aag.1	+	15	2072	c.2028G>A	c.(2026-2028)GAG>GAA	p.E676E	FRMPD1_uc004aah.1_Silent_p.E676E|FRMPD1_uc011lqm.1_Silent_p.E498E|FRMPD1_uc011lqn.1_Silent_p.E545E	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	676						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGTTTTCCGAGAGTGCTGCTT	0.582													12	4					0	0	0.000978159	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324840	79324840	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:79324840T>A	uc010mpk.2	-	8	2474	c.2350A>T	c.(2350-2352)AAT>TAT	p.N784Y		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	784					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCTGTAGGATTTCCCCAGGGC	0.493													8	6					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	9	90459572	90459572	+	RNA	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:90459572G>A	uc004apn.1	+	2		c.155G>A								Human cathepsin-L-like (CTSLL3) mRNA.																		ACAGCCAAGGGAAACACAGCT	0.463													7	4					0	0	0.000274275	0	0
ROR2	4920	broad.mit.edu	37	9	94488955	94488955	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:94488955G>A	uc004arj.1	-	8	1453	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I	ROR2_uc004ari.1_Silent_p.I278I|ROR2_uc004ark.2_Missense_Mutation_p.S407L	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	418	Helical; (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						AAAGGCAAGCGATGACCAGTG	0.537													26	9					0	0	0.00106085	0	0
PTPDC1	138639	broad.mit.edu	37	9	96860833	96860833	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:96860833A>G	uc004auf.1	+	7	2163	c.1823A>G	c.(1822-1824)GAA>GGA	p.E608G	PTPDC1_uc004aug.1_Missense_Mutation_p.E608G|PTPDC1_uc004auh.1_Missense_Mutation_p.E660G|PTPDC1_uc010mrj.1_Missense_Mutation_p.E662G|PTPDC1_uc010mri.1_Missense_Mutation_p.E660G	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	608							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						GAAAAGGAGGAACTAAAAAGG	0.363													31	10					0	0	0.0024448	0	0
C9orf102	375748	broad.mit.edu	37	9	98735349	98735349	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:98735349G>A	uc010mry.1	+	15	3543	c.2455G>A	c.(2455-2457)GAA>AAA	p.E819K	C9orf102_uc004avu.2_Missense_Mutation_p.E397K|uc010msa.1_Missense_Mutation_p.E87K|uc011lun.1_Missense_Mutation_p.E87K			Q5T890	RAD26_HUMAN	RecName: Full=Putative DNA repair and recombination protein RAD26-like;          EC=3.6.1.-;	Error:Variant_position_missing_in_Q5T890_after_alignment					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				GCAGTCGTATGAATCAATGGA	0.279													4	0					0	0	0.000602214	0	0
ZNF782	158431	broad.mit.edu	37	9	99580959	99580959	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:99580959G>A	uc004awp.1	-	6	1627	c.1346C>T	c.(1345-1347)CCA>CTA	p.P449L	ZNF782_uc011lup.1_Missense_Mutation_p.P317L	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				ACATTCGAATGGTTTCTCCCC	0.413													52	22					0	0	0.000781405	0	0
TBC1D2	55357	broad.mit.edu	37	9	100961797	100961797	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:100961797G>A	uc011lvb.1	-	13	2833	c.2653C>T	c.(2653-2655)CAC>TAC	p.H885Y	TBC1D2_uc004ayp.2_Missense_Mutation_p.H425Y|TBC1D2_uc004ayq.2_Missense_Mutation_p.H874Y|TBC1D2_uc004ayr.2_Missense_Mutation_p.H667Y|TBC1D2_uc004ayo.3_3'UTR	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	885	Potential.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		CGCTCCCGGTGGACCATGCGC	0.632													67	34					0	0	0.000781405	0	0
SVEP1	79987	broad.mit.edu	37	9	113173450	113173450	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:113173450C>T	uc010mtz.2	-	37	6878	c.6541G>A	c.(6541-6543)GAA>AAA	p.E2181K	SVEP1_uc010mty.2_Missense_Mutation_p.E107K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2181	Sushi 13.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCTTCTTTTCCCCTTTGATG	0.507													14	5					0	0	0.000308642	0	0
OR1B1	347169	broad.mit.edu	37	9	125391741	125391741	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:125391741G>A	uc011lyz.1	-	1	74	c.74C>T	c.(73-75)TCC>TTC	p.S25F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAGAGTGTAGGAGATGTTAGC	0.512													17	6					0	0	0.00074312	0	0
GOLGA1	2800	broad.mit.edu	37	9	127684102	127684102	+	Missense_Mutation	SNP	G	A	A	rs149867372		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:127684102G>A	uc004bpc.2	-	9	973	c.631C>T	c.(631-633)CGT>TGT	p.R211C	GOLGA1_uc010mws.2_RNA|GOLGA1_uc010mwt.1_Missense_Mutation_p.R186C	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	211	Potential.					Golgi cisterna membrane				ovary(1)	1						TCCTGGGTACGACTAAGTTCT	0.418													40	15					0	0	0.00128727	0	0
SLC27A4	10999	broad.mit.edu	37	9	131105465	131105465	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:131105465G>A	uc004but.2	+	2	338	c.54G>A	c.(52-54)CTG>CTA	p.L18L	SLC27A4_uc004buu.2_Missense_Mutation_p.E46K	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	18					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						AGCTGGTGCTGAAACTGCCCT	0.602													14	6					0	0	0.00244969	0	0
FCN1	2219	broad.mit.edu	37	9	137803076	137803076	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:137803076C>T	uc004cfi.2	-	8	728	c.636G>A	c.(634-636)GAG>GAA	p.E212E		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	212	Fibrinogen C-terminal.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		GGTGGTTGCCCTCAAAGTCCA	0.527													98	25					0	0	0.000781405	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070139	141070139	+	Missense_Mutation	SNP	C	T	T	rs143443709	by1000genomes	TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr9:141070139C>T	uc004com.2	+	3	298	c.37C>T	c.(37-39)CTC>TTC	p.L13F	TUBBP5_uc010ncq.2_Missense_Mutation_p.L127F					RecName: Full=Putative tubulin beta-4q chain;												0						CGGGCAGGTCCTCAGGCCAGA	0.667													4	23					0	0	0.00116845	0	0
ARSE	415	broad.mit.edu	37	X	2873470	2873470	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:2873470G>A	uc004crc.3	-	4	544	c.294C>T	c.(292-294)TAC>TAT	p.Y98Y	ARSE_uc011mhi.1_Silent_p.Y44Y|ARSE_uc011mhh.1_Silent_p.Y123Y	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	98					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ATCGCACAGGGTATCTGCCCG	0.498													10	3					0	0	0.000442599	0	0
MXRA5	25878	broad.mit.edu	37	X	3239245	3239245	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:3239245G>A	uc004crg.3	-	5	4638	c.4481C>T	c.(4480-4482)TCG>TTG	p.S1494L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1494						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGATGGGGACGAGGATGCTGG	0.483													26	3					0	0	0.000720815	0	0
TLR8	51311	broad.mit.edu	37	X	12939813	12939813	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:12939813C>T	uc004cve.2	+	2	2722	c.2654C>T	c.(2653-2655)TCT>TTT	p.S885F	TLR8_uc004cvd.2_Missense_Mutation_p.S903F	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	885	Cytoplasmic (Potential).|TIR.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						GCTTACATTTCTTATGACACC	0.403													31	6					0	0	0.00209593	0	0
MAP3K15	389840	broad.mit.edu	37	X	19392708	19392708	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:19392708G>A	uc004czk.1	-	21	2722	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	MAP3K15_uc004czj.1_Missense_Mutation_p.S322F|MAP3K15_uc004czi.1_5'Flank	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	887	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CTCGAAACAGGATAAAATGAA	0.512													27	7					0	0	0.000878237	0	0
MAGEB18	286514	broad.mit.edu	37	X	26158027	26158027	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:26158027G>A	uc004dbq.1	+	2	1112	c.925G>A	c.(925-927)GAT>AAT	p.D309N		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	309							protein binding			central_nervous_system(1)	1						GGCTTTGAGGGATGAGGAACA	0.522													12	1					0	0	0.00136819	0	0
DMD	1756	broad.mit.edu	37	X	32305680	32305680	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:32305680C>T	uc004dda.1	-	43	6500	c.6256G>A	c.(6256-6258)GAA>AAA	p.E2086K	DMD_uc004dcw.2_Missense_Mutation_p.E742K|DMD_uc004dcx.2_Missense_Mutation_p.E745K|DMD_uc004dcz.2_Missense_Mutation_p.E1963K|DMD_uc004dcy.1_Missense_Mutation_p.E2082K|DMD_uc004ddb.1_Missense_Mutation_p.E2078K|DMD_uc010ngo.1_Intron|DMD_uc010ngn.1_RNA	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2086	Spectrin 14.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTAACTTTTTCCCATTGGAAA	0.398													14	2					0	0	0.000308642	0	0
ZNF81	347344	broad.mit.edu	37	X	47776023	47776023	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:47776023C>T	uc010nhy.1	+	6	2346	c.1978C>T	c.(1978-1980)CAT>TAT	p.H660Y		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	660	C2H2-type 12.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				TCGCAATATTCATACATGAAA	0.363													5	1					0	0	0.00116845	0	0
FTSJ1	24140	broad.mit.edu	37	X	48341135	48341135	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:48341135C>T	uc004djo.1	+	11	1233	c.910C>T	c.(910-912)CCC>TCC	p.P304S	FTSJ1_uc004djl.2_Missense_Mutation_p.P302S|FTSJ1_uc004djm.2_Missense_Mutation_p.P304S|FTSJ1_uc004djn.1_Missense_Mutation_p.P302S|FTSJ1_uc004djp.1_Missense_Mutation_p.P302S|FTSJ1_uc011mlw.1_Missense_Mutation_p.P167S	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	304					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						GGACACGTTTCCCCAGCCCCT	0.642													5	2					0	0	0.00198382	0	0
HUWE1	10075	broad.mit.edu	37	X	53642793	53642793	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:53642793T>G	uc004dsp.2	-	22	2363	c.1961A>C	c.(1960-1962)GAT>GCT	p.D654A		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	654					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GGATGCAGTATCCCCTTAAGG	0.418													8	2					0	0	0.000442599	0	0
FAAH2	158584	broad.mit.edu	37	X	57473420	57473420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:57473420G>A	uc004dvc.2	+	9	1325	c.1176G>A	c.(1174-1176)TGG>TGA	p.W392*		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	392						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GTCCTCTGTGGGAGTTGATCA	0.393										HNSCC(52;0.14)			5	0					0	0	0.00116845	0	0
MTMR8	55613	broad.mit.edu	37	X	63579383	63579383	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:63579383G>A	uc004dvs.2	-	2	117	c.49C>T	c.(49-51)CGT>TGT	p.R17C	MTMR8_uc011mou.1_Missense_Mutation_p.R17C|MTMR8_uc004dvt.1_Missense_Mutation_p.R17C	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	17						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CTCACATAACGATCCACCAAT	0.428													13	4					0	0	0.00185496	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64722081	64722081	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:64722081C>T	uc010nko.2	+	5	1479	c.1470C>T	c.(1468-1470)CCC>CCT	p.P490P		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	490							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CCCATTTCCCCCACCAGAAGG	0.567													47	13					0	0	0.000781405	0	0
POF1B	79983	broad.mit.edu	37	X	84537306	84537306	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:84537306G>A	uc004eer.2	-	16	1813	c.1667C>T	c.(1666-1668)CCA>CTA	p.P556L	POF1B_uc004ees.2_Missense_Mutation_p.P556L	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	556							actin binding				0						GCCTAGGATTGGATATTGTGT	0.254													4	0					0	0	0.000602214	0	0
ARMCX1	51309	broad.mit.edu	37	X	100807961	100807961	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:100807961C>T	uc004ehv.2	+	4	419	c.48C>T	c.(46-48)ATC>ATT	p.I16I	ARMCX1_uc004ehw.2_Silent_p.I16I	NM_016608	NP_057692	Q9P291	ARMX1_HUMAN	armadillo repeat containing, X-linked 1	16	Helical; (Potential).					integral to membrane	binding			ovary(3)|pancreas(1)	4						GTGTGGTTATCGGGGCTGGTG	0.572													26	5					0	0	0.000878237	0	0
ARMCX5	64860	broad.mit.edu	37	X	101858025	101858025	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:101858025T>C	uc004ejg.2	+	6	1837	c.956T>C	c.(955-957)CTT>CCT	p.L319P	ARMCX5_uc004ejh.2_Missense_Mutation_p.L319P	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	319	ARM 1.						binding			ovary(1)	1						GTTGCCCTCCTTAAGTTAACT	0.398													19	2					0	0	0.000958276	0	0
NXF3	56000	broad.mit.edu	37	X	102335530	102335530	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:102335530C>T	uc004eju.2	-	10	972	c.901G>A	c.(901-903)GAA>AAA	p.E301K	NXF3_uc010noi.1_Missense_Mutation_p.E151K	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	301	Leu-rich.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GGGAACAATTCCAGGATGGAG	0.468													31	4					0	0	0.00058488	0	0
COL4A6	1288	broad.mit.edu	37	X	107437780	107437780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:107437780C>T	uc004enw.3	-	16	1092	c.989G>A	c.(988-990)GGA>GAA	p.G330E	COL4A6_uc004env.3_Missense_Mutation_p.G329E|COL4A6_uc011msn.1_Missense_Mutation_p.G329E|COL4A6_uc010npk.2_Missense_Mutation_p.G329E	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	330	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TCCTTGGAATCCATTAAGCCC	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				81	19					0	0	0.000781405	0	0
COL4A5	1287	broad.mit.edu	37	X	107834829	107834829	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:107834829G>A	uc004enz.1	+	21	1580	c.1378G>A	c.(1378-1380)GGA>AGA	p.G460R	COL4A5_uc011mso.1_Missense_Mutation_p.G460R|COL4A5_uc004eob.1_Missense_Mutation_p.G68R	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	460	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AGGCCCCCCAGGATCTCCAGG	0.398									Alport_syndrome_with_Diffuse_Leiomyomatosis				42	6					0	0	0.000781405	0	0
COL4A5	1287	broad.mit.edu	37	X	107849982	107849982	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:107849982G>A	uc004enz.1	+	29	2457	c.2255G>A	c.(2254-2256)GGA>GAA	p.G752E	COL4A5_uc011mso.1_Missense_Mutation_p.G752E|COL4A5_uc004eob.1_Missense_Mutation_p.G360E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	752	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGTGAACCAGGATTTGCATTA	0.478									Alport_syndrome_with_Diffuse_Leiomyomatosis				46	7					0	0	0.000781405	0	0
AMOT	154796	broad.mit.edu	37	X	112021840	112021840	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:112021840G>A	uc004epr.2	-	11	3210	c.3210C>T	c.(3208-3210)ATC>ATT	p.I1070I	AMOT_uc004eps.2_Silent_p.I661I	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	1070					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						CTTGTCCCAGGATCTGAATGG	0.408													164	28					0	0	0.000781405	0	0
KLHL13	90293	broad.mit.edu	37	X	117043976	117043976	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:117043976G>A	uc004eql.2	-	5	716	c.654C>T	c.(652-654)TTC>TTT	p.F218F	KLHL13_uc004eqk.2_Silent_p.F167F|KLHL13_uc011mtn.1_Silent_p.F58F|KLHL13_uc011mto.1_Silent_p.F212F|KLHL13_uc011mtp.1_Silent_p.F220F|KLHL13_uc004eqm.2_Silent_p.F167F|KLHL13_uc011mtq.1_Silent_p.F202F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	218	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TCTTCAAGACGAAACTGTTAA	0.418													25	5					0	0	0.00047179	0	0
KLHL13	90293	broad.mit.edu	37	X	117053571	117053571	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:117053571C>T	uc004eql.2	-	4	545	c.483G>A	c.(481-483)ATG>ATA	p.M161I	KLHL13_uc004eqk.2_Missense_Mutation_p.M110I|KLHL13_uc011mtn.1_Missense_Mutation_p.M1I|KLHL13_uc011mto.1_Missense_Mutation_p.M155I|KLHL13_uc011mtp.1_Missense_Mutation_p.M163I|KLHL13_uc004eqm.2_Missense_Mutation_p.M110I|KLHL13_uc011mtq.1_Missense_Mutation_p.M145I	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	161	BTB.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GAAGGTTGTCCATATTAAGAG	0.368													51	6					0	0	0.000781405	0	0
SEPT6	23157	broad.mit.edu	37	X	118786967	118786967	+	Silent	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:118786967G>A	uc004erv.2	-	4	643	c.378C>T	c.(376-378)TTC>TTT	p.F126F	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Silent_p.F126F|SEPT6_uc004ert.2_Silent_p.F126F|SEPT6_uc004eru.2_Silent_p.F126F|SEPT6_uc004erw.2_Silent_p.F68F|SEPT6_uc011mtv.1_Silent_p.F68F|SEPT6_uc011mtw.1_Silent_p.F156F	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	126					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						GGTAGGCCTCGAATTGTGCAT	0.502													36	6					0	0	0.00222228	0	0
GPR112	139378	broad.mit.edu	37	X	135431445	135431445	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:135431445G>A	uc004ezu.1	+	6	5871	c.5580G>A	c.(5578-5580)ATG>ATA	p.M1860I	GPR112_uc010nsb.1_Missense_Mutation_p.M1655I|GPR112_uc010nsc.1_Missense_Mutation_p.M1627I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1860	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CATCCCAAATGGTTGAATTTC	0.438													7	1					0	0	0.00198382	0	0
GPR112	139378	broad.mit.edu	37	X	135469904	135469904	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:135469904C>T	uc004ezu.1	+	16	8073	c.7782C>T	c.(7780-7782)TTC>TTT	p.F2594F	GPR112_uc010nsb.1_Silent_p.F2389F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2594	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GGCAGATTTTCCTAGGCAATG	0.433													13	8					0	0	0.000422831	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993243	140993243	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:140993243C>T	uc004fbt.2	+	4	339	c.53C>T	c.(52-54)TCC>TTC	p.S18F	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	18							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCAGAGTTCCTCTGAGAGT	0.478										HNSCC(15;0.026)			31	4					0	0	0.00058488	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291569	141291569	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:141291569C>T	uc004fbu.1	-	3	553	c.205G>A	c.(205-207)GAG>AAG	p.E69K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	69	Poly-Glu.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGCACCTCCTCCTCCTCAGGA	0.403										HNSCC(46;0.14)			27	1					0	0	0.000586117	0	0
AFF2	2334	broad.mit.edu	37	X	147743491	147743491	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:147743491G>A	uc004fcp.2	+	3	722	c.243G>A	c.(241-243)ATG>ATA	p.M81I	AFF2_uc004fco.2_Missense_Mutation_p.M77I|AFF2_uc004fcq.2_Missense_Mutation_p.M77I|AFF2_uc004fcr.2_Missense_Mutation_p.M77I|AFF2_uc011mxb.1_Missense_Mutation_p.M81I|AFF2_uc004fcs.2_Missense_Mutation_p.M77I	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	81					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ATGATGAAATGAAGAATTTGC	0.403													75	13					0	0	0.000781405	0	0
GABRQ	55879	broad.mit.edu	37	X	151818284	151818284	+	Silent	SNP	C	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:151818284C>T	uc004ffp.1	+	6	710	c.690C>T	c.(688-690)ATC>ATT	p.I230I		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	230	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTGCATATCCCTCAGTTCA	0.488													50	5					0	0	0.000781405	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900428	151900428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:151900428G>A	uc010ntp.2	-	3	727	c.373C>T	c.(373-375)CGA>TGA	p.R125*	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Nonsense_Mutation_p.R125*|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	125	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCTGGCTCGATACTTGAGG	0.498													52	12					0	0	0.000781405	0	0
SLC10A3	8273	broad.mit.edu	37	X	153715943	153715943	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:153715943G>A	uc004flq.2	-	3	1601	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.S417F|SLC10A3_uc004flp.2_Missense_Mutation_p.S446F	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	446					organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGGGCCTGGGAGGCATAGTC	0.627													24	8					0	0	0.000720815	0	0
F8	2157	broad.mit.edu	37	X	154134723	154134723	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chrX:154134723A>G	uc004fmt.2	-	15	5516	c.5345T>C	c.(5344-5346)ATA>ACA	p.I1782T	F8_uc010nvi.1_5'UTR	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1782	F5/8 type A 3.|Plastocyanin-like 5.		I -> R (in HEMA; severe sporadic).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTCTGCTCTTATATATGGCCC	0.338													24	13					0	0	0.00127121	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137645	40137646	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr11:40137645_40137646insT	uc001mxa.1	-	2	2161_2162	c.197_198insA	c.(196-198)AACfs	p.N66fs	LRRC4C_uc001mxc.1_Frame_Shift_Ins_p.N62fs|LRRC4C_uc001mxd.1_Frame_Shift_Ins_p.N62fs|LRRC4C_uc001mxb.1_Frame_Shift_Ins_p.N62fs	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	66	LRRNT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CCTCACGCAGGTTTTTCCGAAC	0.525													30	5	---	---	---	---					
OVCH1	341350	broad.mit.edu	37	12	29631833	29631846	+	Splice_Site	DEL	ATGTCTAAACTTGT	-	-			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr12:29631833_29631846delATGTCTAAACTTGT	uc001rix.1	-	9	996	c.996_splice	c.e9-1	p.I332_splice		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor						proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TTGCTTTTCCATGTCTAAACTTGTAAATTTTATC	0.318													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	90160897	90160898	+	In_Frame_Ins	INS	-	GCG	GCG			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr16:90160897_90160898insGCG	uc002fqp.2	+	2	848_849	c.370_371insGCG	c.(370-372)CGC>CGCGGC	p.125_126insG	uc002fqq.2_Intron					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		CTCCTGGGAACGCGGCCCTCCC	0.728													5	7	---	---	---	---					
MAP1S	55201	broad.mit.edu	37	19	17845123	17845125	+	In_Frame_Del	DEL	GTG	-	-	rs71791998		TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr19:17845123_17845125delGTG	uc002nhe.1	+	7	3075_3077	c.3066_3068delGTG	c.(3064-3069)ACGTGG>ACG	p.W1023del	MAP1S_uc010eba.1_Intron|MAP1S_uc002nhf.1_In_Frame_Del_p.W271del|MAP1S_uc010xpv.1_In_Frame_Del_p.W997del	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	1023	Necessary for association with actin (By similarity).|Necessary for interaction with RASSF1 isoform A and isoform C.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						CCATGCATACGTGGTACGCAGAG	0.660													7	16	---	---	---	---					
DNAH7	56171	broad.mit.edu	37	2	196786910	196786910	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr2:196786910delT	uc002utj.3	-	24	3938	c.3837delA	c.(3835-3837)TTAfs	p.L1279fs		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1279	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTTTGTTTCTAAATGATTTT	0.294													9	18	---	---	---	---					
SNRK	54861	broad.mit.edu	37	3	43389865	43389875	+	Frame_Shift_Del	DEL	AGTTTTTCTCT	-	-			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:43389865_43389875delAGTTTTTCTCT	uc003cms.3	+	7	2446_2456	c.2114_2124delAGTTTTTCTCT	c.(2113-2124)AAGTTTTTCTCTfs	p.K705fs	SNRK_uc003cmt.3_Frame_Shift_Del_p.K705fs|SNRK_uc010hik.2_Frame_Shift_Del_p.K705fs|SNRK_uc011azr.1_Frame_Shift_Del_p.K499fs	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	705_708					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		GGCGGCATAAAGTTTTTCTCTGACCACATGG	0.469													27	52	---	---	---	---					
DNAH12	201625	broad.mit.edu	37	3	57509312	57509313	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr3:57509312_57509313insT	uc003dit.2	-	4	457_458	c.276_277insA	c.(274-279)AAAGGAfs	p.K92fs	DNAH12_uc003diu.2_Frame_Shift_Ins_p.K92fs	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	92_93	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						GAACTCACTCCTTTTTTTTTCA	0.248													7	62	---	---	---	---					
AFP	174	broad.mit.edu	37	4	74313277	74313285	+	In_Frame_Del	DEL	AATTCATGC	-	-			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr4:74313277_74313285delAATTCATGC	uc003hgz.1	+	8	989_997	c.942_950delAATTCATGC	c.(940-951)ATAATTCATGCA>ATA	p.IHA315del	AFP_uc003hha.1_In_Frame_Del_p.IHA315del|AFP_uc011cbg.1_In_Frame_Del_p.IHA89del	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	315_317	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTCAATGTATAATTCATGCAGAAAATGAT	0.349									Alpha-Fetoprotein_Hereditary_Persistence_of				9	32	---	---	---	---					
KDM3B	51780	broad.mit.edu	37	5	137728990	137728991	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-ER-A19F-06A-11D-A196-08	TCGA-ER-A19F-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	5f6b4e22-9bf9-4da6-86a9-660f2bafbcae	95330688-090e-49b7-9d53-78b4e5cd1dd3	g.chr5:137728990_137728991delGC	uc003lcy.1	+	9	2960_2961	c.2760_2761delGC	c.(2758-2763)GAGCGGfs	p.E920fs	KDM3B_uc010jew.1_Frame_Shift_Del_p.E576fs|KDM3B_uc011cys.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	920_921					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GCCGCCTGGAGCGGTACCGGAA	0.510													10	21	---	---	---	---					
