Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PER3	8863	broad.mit.edu	37	1	7863183	7863183	+	Missense_Mutation	SNP	C	T	T	rs145870917		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:7863183C>T	uc001aoo.2	+	8	1121	c.946C>T	c.(946-948)CGT>TGT	p.R316C	PER3_uc009vmg.1_Missense_Mutation_p.R317C|PER3_uc009vmh.1_Missense_Mutation_p.R317C|PER3_uc001aop.2_Missense_Mutation_p.R317C|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.R316C	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	316	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGAAGATCGTTCTCTGAT	0.428000													28	108					0	0	0.000409698	0	0
CASZ1	54897	broad.mit.edu	37	1	10719965	10719965	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:10719965G>A	uc001aro.2	-	6	1454	c.1134C>T	c.(1132-1134)GTC>GTT	p.V378V	CASZ1_uc001arp.1_Silent_p.V378V|CASZ1_uc009vmx.2_Silent_p.V402V|CASZ1_uc001arq.1_Silent_p.V237V	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGATGCCCCGGACGTCGTACT	0.721000													8	23					0	0	0.000442599	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855635	12855635	+	Silent	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:12855635A>G	uc001auj.1	+	4	1018	c.915A>G	c.(913-915)CTA>CTG	p.L305L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	305											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATGGCTACCTATTGGAAGAAG	0.473000													18	79					0	0	0.00127121	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483000													5	232					0	0	0.000602214	0	0
EFHD2	79180	broad.mit.edu	37	1	15752398	15752398	+	Silent	SNP	C	T	T	rs146542005		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:15752398C>T	uc001awh.2	+	2	417	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	114	EF-hand 1.|1 (Potential).					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCATCGACCTGATGGAGCT	0.542000													19	68					0	0	0.000295444	0	0
C1orf144	26099	broad.mit.edu	37	1	16721553	16721554	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:16721553_16721554CC>TT	uc001aym.3	+	4	547_548	c.377_378CC>TT	c.(376-378)CCC>CTT	p.P126L	C1orf144_uc010ocb.1_Missense_Mutation_p.P106L|C1orf144_uc001ayi.3_Missense_Mutation_p.P107L|C1orf144_uc001ayk.3_Missense_Mutation_p.P106L	NM_001114600	NP_001108072	Q7Z422	CA144_HUMAN	putative MAPK activating protein PM20,PM21	126											0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(227;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;4.12e-05)|Kidney(64;0.00018)|KIRC - Kidney renal clear cell carcinoma(64;0.00267)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTCCCAACCCGAAGACAGCA	0.441000													13	32					0	0	6.4e-05	0	0
ATP13A2	23400	broad.mit.edu	37	1	17327006	17327006	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:17327006G>A	uc001baa.2	-	9	919	c.729C>T	c.(727-729)TTC>TTT	p.F243F	ATP13A2_uc001bab.2_Silent_p.F238F|ATP13A2_uc001bac.2_Silent_p.F238F|ATP13A2_uc009vpa.1_5'Flank|ATP13A2_uc001bad.1_5'UTR	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	243	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		TGAAGGCCTGGAACCCATAGT	0.647000													10	13					0	0	0.00185496	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808853	18808853	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:18808853G>A	uc001bax.2	+	1	1430	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E242K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	460						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGATGAGCGAAAACTACCT	0.642000													30	37					0	0	0.000409698	0	0
RPL11	6135	broad.mit.edu	37	1	24022389	24022390	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:24022389_24022390CC>TT	uc001bhk.2	+	5	518_519	c.498_499CC>TT	c.(496-501)TTCCAG>TTTTAG	p.Q167*	RPL11_uc001bhl.2_Nonsense_Mutation_p.Q166*|RPL11_uc001bhm.2_Nonsense_Mutation_p.Q156*|RPL11_uc001bhn.1_3'UTR	NM_000975	NP_000966	P62913	RL11_HUMAN	ribosomal protein L11	167					endocrine pancreas development|protein localization to nucleus|protein targeting|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|rRNA binding|structural constituent of ribosome			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.13e-24)|Colorectal(126;5.06e-08)|COAD - Colon adenocarcinoma(152;2.92e-06)|GBM - Glioblastoma multiforme(114;4.4e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|KIRC - Kidney renal clear cell carcinoma(1967;0.00322)|STAD - Stomach adenocarcinoma(196;0.0124)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0837)|LUSC - Lung squamous cell carcinoma(448;0.185)		TGCGCTGGTTCCAGCAGAAGGT	0.490000													4	5					0	0	6.4e-05	0	0
ARID1A	8289	broad.mit.edu	37	1	27097779	27097779	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:27097779C>T	uc001bmv.1	+	12	3741	c.3368C>T	c.(3367-3369)TCC>TTC	p.S1123F	ARID1A_uc001bmt.1_Missense_Mutation_p.S1123F|ARID1A_uc001bmu.1_Missense_Mutation_p.S1123F|ARID1A_uc001bmw.1_Missense_Mutation_p.S740F|ARID1A_uc001bmx.1_5'UTR|ARID1A_uc009vsm.1_5'Flank	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1123					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCTGCTGATTCCAAGAAGTCC	0.547000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								7	24					0	0	0.000157383	0	0
PUM1	9698	broad.mit.edu	37	1	31437599	31437599	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:31437599G>A	uc001bsi.1	-	14	2358	c.2245C>T	c.(2245-2247)CCT>TCT	p.P749S	PUM1_uc001bsf.1_Missense_Mutation_p.P415S|PUM1_uc001bsg.1_Intron|PUM1_uc001bsh.1_Missense_Mutation_p.P749S|PUM1_uc001bsj.1_Missense_Mutation_p.P723S|PUM1_uc010oga.1_Missense_Mutation_p.P605S|PUM1_uc001bsk.1_Missense_Mutation_p.P785S|PUM1_uc010ogb.1_Missense_Mutation_p.P690S	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	749	Ser-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CCCTGACTAGGGAGAGGCATG	0.502000													62	67					0	0	0.000781405	0	0
EIF2C1	26523	broad.mit.edu	37	1	36360862	36360862	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:36360862C>T	uc001bzl.2	+	8	1225	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S	EIF2C1_uc001bzk.2_Missense_Mutation_p.P263S|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	338	PAZ.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TACCTACCTTCCCCTAGAGGT	0.443000													21	18					0	0	0.000295444	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049977	42049977	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:42049977G>A	uc001cgz.3	-	4	1705	c.492C>T	c.(490-492)TTC>TTT	p.F164F	HIVEP3_uc001cha.3_Silent_p.F164F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	164					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GACGAGGCACGAAGACTTTGG	0.597000													28	85					0	0	0.001512	0	0
MPL	4352	broad.mit.edu	37	1	43812205	43812205	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:43812205G>A	uc001ciw.2	+	7	1115	c.1070G>A	c.(1069-1071)CGA>CAA	p.R357Q	MPL_uc001civ.2_Missense_Mutation_p.R357Q|MPL_uc009vwr.2_Missense_Mutation_p.R350Q	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	357	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCAAGTCACGAAATGACAGC	0.532000			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						25	86					0	0	0.00047179	0	0
PTPRF	5792	broad.mit.edu	37	1	44072625	44072625	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:44072625C>T	uc001cjr.2	+	21	4183	c.3843C>T	c.(3841-3843)ATC>ATT	p.I1281I	PTPRF_uc001cjs.2_Silent_p.I1272I|PTPRF_uc001cju.2_Silent_p.I659I|PTPRF_uc009vwt.2_Silent_p.I841I|PTPRF_uc001cjv.2_Silent_p.I741I|PTPRF_uc001cjw.2_Silent_p.I507I	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1281	Helical; (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TCATCGCCATCCTCTTGTTCA	0.627000													14	61					0	0	0.00152264	0	0
PTCH2	8643	broad.mit.edu	37	1	45294871	45294871	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:45294871G>A	uc010olf.1	-	10	1341	c.1329C>T	c.(1327-1329)CTC>CTT	p.L443L	PTCH2_uc010olg.1_Silent_p.L142L	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	443	Helical; (Potential).|SSD.				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					GCAGGGCACAGAGCCCAAGGC	0.667000									Basal_Cell_Nevus_syndrome				13	16					0	0	0.00185496	0	0
PRKAA2	5563	broad.mit.edu	37	1	57159492	57159492	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:57159492C>T	uc001cyk.3	+	5	601	c.530C>T	c.(529-531)CCA>CTA	p.P177L		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	177	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TGCGGATCTCCAAATTATGCA	0.308000													96	128					0	0	0.000781405	0	0
PGM1	5236	broad.mit.edu	37	1	64059224	64059224	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:64059224T>C	uc001dbh.2	+	1	278	c.65T>C	c.(64-66)CTG>CCG	p.L22P	PGM1_uc010ooy.1_5'Flank	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	22					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						ACGAGCGGGCTGCGGAAGCGG	0.647000													5	23					0	0	0.000157383	0	0
TTLL7	79739	broad.mit.edu	37	1	84383305	84383305	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:84383305G>A	uc001djc.2	-	14	1965	c.1569C>T	c.(1567-1569)ACC>ACT	p.T523T	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	523					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CTCGAGTCTTGGTAGTTTTTC	0.353000													22	44					0	0	0.000295444	0	0
DPYD	1806	broad.mit.edu	37	1	97981290	97981290	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:97981290G>A	uc001drv.2	-	13	1869	c.1732C>T	c.(1732-1734)CTT>TTT	p.L578F		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	578					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ACCTTATCAAGAGAGAAAGTT	0.333000													33	54					0	0	0.00058488	0	0
C1orf194	127003	broad.mit.edu	37	1	109650604	109650604	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:109650604C>T	uc009wev.2	-	2	205	c.137G>A	c.(136-138)CGG>CAG	p.R46Q	C1orf194_uc001dwp.3_Intron|C1orf194_uc009wew.2_Missense_Mutation_p.R34Q	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	46										ovary(1)	1						TGAGTTGAGCCGACTCCAGGG	0.473000													25	96					0	0	0.000878237	0	0
MYBPHL	343263	broad.mit.edu	37	1	109840136	109840137	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:109840136_109840137CG>AT	uc001dxk.1	-	3	387_388	c.337_338CG>AT	c.(337-339)CGA>ATA	p.R113I	MYBPHL_uc010ovh.1_Missense_Mutation_p.R113I|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	113	Ig-like C2-type 1.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		TTGGGCTTCTCGGATGAAGAGG	0.594000													8	339					0	0	6.4e-05	0	0
GPR61	83873	broad.mit.edu	37	1	110086463	110086463	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:110086463G>A	uc001dxy.2	+	2	1502	c.819G>A	c.(817-819)CAG>CAA	p.Q273Q		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	273	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGGCCCCCCAGACCACCCCAC	0.652000													22	17					0	0	0.00188189	0	0
OVGP1	5016	broad.mit.edu	37	1	111957780	111957780	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:111957780C>T	uc001eba.2	-	11	1399	c.1343G>A	c.(1342-1344)GGT>GAT	p.G448D	OVGP1_uc001eaz.2_Missense_Mutation_p.G410D|OVGP1_uc010owb.1_Missense_Mutation_p.G96D	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	448					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CACAGTTGTACCTCTAGGGGT	0.488000													35	26					0	0	0.000692331	0	0
IGSF3	3321	broad.mit.edu	37	1	117146260	117146260	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:117146260G>A	uc001egr.1	-	6	2315	c.1610C>T	c.(1609-1611)TCC>TTC	p.S537F	IGSF3_uc001egq.1_Missense_Mutation_p.S557F|IGSF3_uc001egs.1_Missense_Mutation_p.S210F	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	537	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		AGCTGTGATGGAGATGGGAGT	0.577000													22	31					0	0	0.00047179	0	0
SPAG17	200162	broad.mit.edu	37	1	118534050	118534050	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:118534050G>T	uc001ehk.2	-	37	5531	c.5463C>A	c.(5461-5463)CTC>CTA	p.L1821L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1821						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TAACCAGCTTGAGGAGATCAG	0.363000													24	29					7.07758e-08	5.15412e-07	0.000720815	1	0
SPAG17	200162	broad.mit.edu	37	1	118537036	118537036	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:118537036G>A	uc001ehk.2	-	35	5239	c.5171C>T	c.(5170-5172)TCA>TTA	p.S1724L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1724						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TACCTCAACTGAGGGAAATGT	0.403000													23	50					0	0	0.00047179	0	0
SPAG17	200162	broad.mit.edu	37	1	118658037	118658037	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:118658037C>T	uc001ehk.2	-	4	411	c.343G>A	c.(343-345)GAT>AAT	p.D115N		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	115						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCTCCACTATCCATAATTGCT	0.353000													25	39					0	0	0.000878237	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144877260	144877260	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:144877260G>A	uc001elw.3	-	28	4718	c.4427C>T	c.(4426-4428)TCC>TTC	p.S1476F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1432F|PDE4DIP_uc001elv.3_Missense_Mutation_p.S483F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1476					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGAATCAGGGAATCATATTT	0.428000			T	PDGFRB	MPD								14	66					0	0	0.000308642	0	0
SETDB1	9869	broad.mit.edu	37	1	150900198	150900198	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:150900198C>T	uc001evu.2	+	2	198	c.8C>T	c.(7-9)TCC>TTC	p.S3F	SETDB1_uc009wmf.2_Missense_Mutation_p.S3F|SETDB1_uc001evv.2_Missense_Mutation_p.S3F|SETDB1_uc001evw.3_Missense_Mutation_p.S3F|SETDB1_uc009wmg.1_Missense_Mutation_p.S3F	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGCATGTCTTCCCTTCCTGGG	0.423000													36	65					0	0	0.00170553	0	0
SPRR2F	6705	broad.mit.edu	37	1	153085154	153085154	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:153085154G>C	uc001fbi.2	-	2	115	c.56C>G	c.(55-57)CCC>CGC	p.P19R	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001014450	NP_001014450	Q96RM1	SPR2F_HUMAN	small proline-rich protein 2F	19					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTTTGGCGCGGGGCACACAGG	0.577000													4	135					0	0	8.12818e-05	0	0
ASH1L	55870	broad.mit.edu	37	1	155330170	155330170	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:155330170G>A	uc009wqq.2	-	13	7212	c.6732C>T	c.(6730-6732)CTC>CTT	p.L2244L	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Silent_p.L2239L	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2244	SET.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TAAGAGCATAGAGTCCAATCC	0.308000													28	48					0	0	0.000491102	0	0
CD1C	911	broad.mit.edu	37	1	158263023	158263023	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:158263023G>A	uc001fru.2	+	5	1203	c.911G>A	c.(910-912)TGG>TAG	p.W304*	CD1C_uc001frv.2_Intron	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	304	Helical; (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TCCATGAATTGGATTGCCTTG	0.393000													94	147					0	0	0.000781405	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517880	158517880	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:158517880G>A	uc010pil.1	-	1	16	c.16C>T	c.(16-18)CTG>TTG	p.L6L		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCTACTTCCAGAATTATGGTG	0.448000													37	48					0	0	0.000437636	0	0
ADCY10	55811	broad.mit.edu	37	1	167814888	167814888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:167814888G>A	uc001ger.2	-	21	3218	c.2920C>T	c.(2920-2922)CCC>TCC	p.P974S	ADCY10_uc009wvk.2_Missense_Mutation_p.P882S|ADCY10_uc010plj.1_Missense_Mutation_p.P821S|ADCY10_uc009wvl.2_Missense_Mutation_p.P973S	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	974					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGATGATAGGGAATGAAGTCC	0.448000													40	59					0	0	0.000437636	0	0
DNM3	26052	broad.mit.edu	37	1	171890908	171890908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:171890908C>T	uc001gie.2	+	2	358	c.182C>T	c.(181-183)TCG>TTG	p.S61L	DNM3_uc001gid.3_Missense_Mutation_p.S61L|DNM3_uc009wwb.2_Missense_Mutation_p.S61L|DNM3_uc001gif.2_Missense_Mutation_p.S61L	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	61					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CCTCGAGGGTCGGGCATTGTA	0.433000													7	15					0	0	0.000157383	0	0
C1orf9	51430	broad.mit.edu	37	1	172558496	172558496	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:172558496C>T	uc001giq.3	+	18	2571	c.2255C>T	c.(2254-2256)TCT>TTT	p.S752F	C1orf9_uc010pmm.1_Missense_Mutation_p.S752F|C1orf9_uc009wwd.2_Missense_Mutation_p.S708F|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	752					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GTATCTGAGTCTGTTGAATAT	0.388000													33	36					0	0	0.000692331	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526135	176526135	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:176526135C>T	uc001gkz.2	+	2	1841	c.677C>T	c.(676-678)TCC>TTC	p.S226F	PAPPA2_uc001gky.1_Missense_Mutation_p.S226F|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	226					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCAAGCATTCCCTTAAACAC	0.547000													51	57					0	0	0.000781405	0	0
PAPPA2	60676	broad.mit.edu	37	1	176679243	176679243	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:176679243G>A	uc001gkz.2	+	11	4746	c.3582G>A	c.(3580-3582)CGG>CGA	p.R1194R	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1194					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGGCTACCCGGGCTTACTCCT	0.458000													55	66					0	0	0.000781405	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762786	176762786	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:176762786T>G	uc001gkz.2	+	20	6275	c.5111T>G	c.(5110-5112)ATG>AGG	p.M1704R	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1704	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GAGCACTGGATGGAACCTGTC	0.478000													19	65					0	0	0.00121646	0	0
FAM5C	339479	broad.mit.edu	37	1	190195377	190195377	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:190195377T>C	uc001gse.1	-	6	1028	c.796A>G	c.(796-798)AAT>GAT	p.N266D	FAM5C_uc010pot.1_Missense_Mutation_p.N164D	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	266						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CCCTCTGAATTGCAAGCAATG	0.428000													17	42					0	0	0.00188189	0	0
CFH	3075	broad.mit.edu	37	1	196715099	196715099	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:196715099G>A	uc001gtj.3	+	21	3703	c.3463G>A	c.(3463-3465)GGA>AGA	p.G1155R		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1155	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATGTAGAAATGGACAATGGTC	0.388000													13	41					0	0	0.00074312	0	0
CFHR4	10877	broad.mit.edu	37	1	196887394	196887394	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:196887394G>A	uc001gto.2	+	6	923	c.854G>A	c.(853-855)GGA>GAA	p.G285E	CFHR4_uc009wyy.2_Missense_Mutation_p.G531E|CFHR4_uc001gtp.2_Missense_Mutation_p.G532E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	285	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CAGTTAAAAGGAAAAAGTGAC	0.279000													19	61					0	0	0.00188189	0	0
SLC26A9	115019	broad.mit.edu	37	1	205886434	205886434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:205886434G>A	uc001hdq.2	-	20	2419	c.2305C>T	c.(2305-2307)CGC>TGC	p.R769C	SLC26A9_uc001hdm.2_5'UTR|SLC26A9_uc001hdn.2_5'UTR|SLC26A9_uc001hdo.2_Missense_Mutation_p.R437C|SLC26A9_uc001hdp.2_Missense_Mutation_p.R769C	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	769						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CAGTAGCTGCGAATGTCCTCC	0.577000													42	118					0	0	0.000781405	0	0
PFKFB2	5208	broad.mit.edu	37	1	207240856	207240856	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:207240856C>T	uc001hfg.2	+	9	754	c.645C>T	c.(643-645)TTC>TTT	p.F215F	PFKFB2_uc010psc.1_Silent_p.F117F|PFKFB2_uc001hfh.2_Silent_p.F215F|PFKFB2_uc009xcc.2_Silent_p.F173F|PFKFB2_uc010psd.1_Silent_p.F29F	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	215	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					ATCTTTCTTTCATCAAGGTGA	0.428000													27	36					0	0	0.001512	0	0
SERTAD4	56256	broad.mit.edu	37	1	210414925	210414925	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:210414925G>A	uc001hhy.2	+	4	493	c.314G>A	c.(313-315)CGA>CAA	p.R105Q	SERTAD4_uc009xcw.2_Missense_Mutation_p.R105Q	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	105	SERTA.						protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TTTGAGGAACGAGCCCACATC	0.284000													32	45					0	0	0.000692331	0	0
NEK2	4751	broad.mit.edu	37	1	211842553	211842553	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:211842553G>A	uc001hir.1	-	6	1033	c.887C>T	c.(886-888)TCG>TTG	p.S296L	NEK2_uc001hiq.1_Missense_Mutation_p.S296L|NEK2_uc001his.3_Missense_Mutation_p.S296L|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	296	Interaction with PCNT.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		GGAATCCTGCGATTTTTCTGG	0.443000													42	100					0	0	0.00148497	0	0
NEK2	4751	broad.mit.edu	37	1	211842669	211842669	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:211842669G>A	uc001hir.1	-	6	917	c.771C>T	c.(769-771)TAC>TAT	p.Y257Y	NEK2_uc001hiq.1_Silent_p.Y257Y|NEK2_uc001his.3_Silent_p.Y257Y|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	257	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		AAGGTCGATGGTAATCCTGGG	0.373000													38	36					0	0	0.00148497	0	0
USH2A	7399	broad.mit.edu	37	1	216040470	216040470	+	Silent	SNP	C	T	T	rs139348606		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:216040470C>T	uc001hku.1	-	44	9111	c.8724G>A	c.(8722-8724)GTG>GTA	p.V2908V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2908	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTGTAAAACCCACACTGTTGT	0.403000										HNSCC(13;0.011)			12	41					0	0	0.00136819	0	0
ABCB10	23456	broad.mit.edu	37	1	229661728	229661729	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:229661728_229661729GG>TT	uc001htp.3	-	10	1903_1904	c.1860_1861CC>AA	c.(1858-1863)CCCCAA>CCAAAA	p.Q621K		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	621	Mitochondrial intermembrane (Potential).|ABC transporter.|Mitochondrial matrix (Potential).			FIRNFPQG -> SPEFPPR (in Ref. 6; AAA84438).		integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				TTGAACCCTTGGGGGAAATTCC	0.475000													8	163					0	0	6.4e-05	0	0
SLC35F3	148641	broad.mit.edu	37	1	234041332	234041332	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:234041332G>A	uc001hvy.1	+	2	256	c.111G>A	c.(109-111)CAG>CAA	p.Q37Q		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TCAGCCCCCAGCTCCGGCAGC	0.672000													16	12					0	0	0.000308642	0	0
MTR	4548	broad.mit.edu	37	1	236995338	236995338	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr1:236995338C>T	uc001hyi.3	+	13	1571	c.1148C>T	c.(1147-1149)TCA>TTA	p.S383L	MTR_uc010pxw.1_Intron|MTR_uc010pxx.1_Missense_Mutation_p.S383L|MTR_uc010pxy.1_Missense_Mutation_p.S383L	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	383	Pterin-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	GTTGCAGGATCAAGGAAGTTT	0.428000													29	43					0	0	0.000409698	0	0
RET	5979	broad.mit.edu	37	10	43604664	43604664	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:43604664C>T	uc001jal.2	+	6	1439	c.1249C>T	c.(1249-1251)CGC>TGC	p.R417C	RET_uc001jak.1_Missense_Mutation_p.R417C|RET_uc010qez.1_Missense_Mutation_p.R163C	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	417	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CAGGAGGGCTCGCCGATTTGC	0.627000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				11	4					0	0	0.00185496	0	0
PPYR1	5540	broad.mit.edu	37	10	47086833	47086833	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:47086833G>A	uc001jee.2	+	3	469	c.50G>A	c.(49-51)GGT>GAT	p.G17D	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.G17D	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	17	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TCTCCACAAGGTGAAAACAGA	0.483000													22	38					0	0	0.00047179	0	0
PCDH15	65217	broad.mit.edu	37	10	56128965	56128965	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:56128965T>A	uc001jju.1	-	5	784	c.389A>T	c.(388-390)TAC>TTC	p.Y130F	PCDH15_uc010qhq.1_Missense_Mutation_p.Y135F|PCDH15_uc010qhr.1_Missense_Mutation_p.Y130F|PCDH15_uc010qhs.1_Missense_Mutation_p.Y135F|PCDH15_uc010qht.1_Missense_Mutation_p.Y130F|PCDH15_uc010qhu.1_Missense_Mutation_p.Y130F|PCDH15_uc001jjv.1_Missense_Mutation_p.Y108F|PCDH15_uc010qhv.1_Missense_Mutation_p.Y130F|PCDH15_uc010qhw.1_Missense_Mutation_p.Y130F|PCDH15_uc010qhx.1_Missense_Mutation_p.Y130F|PCDH15_uc010qhy.1_Missense_Mutation_p.Y135F|PCDH15_uc010qhz.1_Missense_Mutation_p.Y130F|PCDH15_uc010qia.1_Missense_Mutation_p.Y108F|PCDH15_uc010qib.1_Missense_Mutation_p.Y108F|PCDH15_uc001jjw.2_Missense_Mutation_p.Y130F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	130	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CACTTCATGGTAGATAATAGT	0.413000										HNSCC(58;0.16)			21	13					0	0	0.00152264	0	0
FAM13C	220965	broad.mit.edu	37	10	61028361	61028361	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:61028361C>T	uc001jkn.2	-	9	1028	c.894G>A	c.(892-894)CGG>CGA	p.R298R	FAM13C_uc001jko.2_Silent_p.R298R|FAM13C_uc010qid.1_Silent_p.R215R|FAM13C_uc010qie.1_Silent_p.R215R|FAM13C_uc010qif.1_Silent_p.R320R|FAM13C_uc001jkp.2_Silent_p.R215R	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	298										ovary(2)	2						TCCGAATTTTCCGCTTGAGGC	0.502000													17	10					0	0	0.000422831	0	0
PDZD7	79955	broad.mit.edu	37	10	102782051	102782051	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:102782051G>A	uc001kso.1	-	5	849	c.634C>T	c.(634-636)CAC>TAC	p.H212Y	PDZD7_uc001ksn.2_Missense_Mutation_p.H212Y	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	212	PDZ 2.					cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GTGTATAGGTGGACGATGCGC	0.587000													13	5					0	0	0.00185496	0	0
TDRD1	56165	broad.mit.edu	37	10	115973123	115973123	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:115973123G>A	uc001lbg.1	+	15	2003	c.1850G>A	c.(1849-1851)GGA>GAA	p.G617E	TDRD1_uc001lbf.2_Missense_Mutation_p.G551E|TDRD1_uc001lbh.1_Missense_Mutation_p.G608E|TDRD1_uc001lbi.1_Missense_Mutation_p.G608E|TDRD1_uc010qsc.1_Missense_Mutation_p.G221E|TDRD1_uc001lbj.2_Missense_Mutation_p.G326E	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	617					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CCATCATTAGGAATTTGGACT	0.348000													32	15					0	0	0.000339439	0	0
ADAM12	8038	broad.mit.edu	37	10	127737878	127737878	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:127737878C>A	uc001ljk.2	-	16	2283	c.1870G>T	c.(1870-1872)GAT>TAT	p.D624Y	ADAM12_uc010qul.1_Missense_Mutation_p.D575Y|ADAM12_uc001ljm.2_Missense_Mutation_p.D624Y|ADAM12_uc001ljn.2_Missense_Mutation_p.D621Y|ADAM12_uc001ljl.3_Missense_Mutation_p.D621Y	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	624	Extracellular (Potential).|Cys-rich.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		GGCATGTCATCGCCCAAGTAC	0.527000													5	135					8.12818e-05	0.000581186	8.12818e-05	1	0
FRG2B	441581	broad.mit.edu	37	10	135440236	135440236	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr10:135440236C>T	uc010qvg.1	-	1	64	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	4						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GTCTTCATTTCCCTTTCCCAT	0.522000													22	101					0	0	0.000720815	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642817	1642817	+	Silent	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:1642817A>G	uc009ycy.1	-	4	732	c.645T>C	c.(643-645)GGT>GGC	p.G215G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	229	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ATGACCCACAACCTGAGGAGG	0.612000													5	89					0	0	0.000673444	0	0
IGF2AS	51214	broad.mit.edu	37	11	2167598	2167598	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:2167598G>A	uc010qxi.1	+	2	565	c.428G>A	c.(427-429)CGA>CAA	p.R143Q	IGF2_uc001lvh.2_Intron|INS-IGF2_uc001lvi.2_Intron|IGF2AS_uc001lvk.1_RNA|IGF2AS_uc001lvl.1_RNA	NM_016412	NP_057496			RecName: Full=Putative insulin-like growth factor 2 antisense gene protein;          Short=IGF2-AS; AltName: Full=PEG8/IGF2AS protein;												0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00388)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CGCCGCAGACGAGGCGCTGAC	0.662000													22	16					0	0	0.000375601	0	0
INS-IGF2	723961	broad.mit.edu	37	11	2182097	2182097	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:2182097C>T	uc001lvm.2	-	2	164	c.105G>A	c.(103-105)CTG>CTA	p.L35L	INS-IGF2_uc001lvi.2_RNA|INS_uc001lvn.1_Silent_p.L35L|INS_uc001lvo.1_Silent_p.L35L|INS_uc009ydg.1_Silent_p.L35L	NM_001042376	NP_001035835	Q1WM24	Q1WM24_HUMAN	insulin- insulin-like growth factor 2	35					glucose metabolic process	extracellular region	hormone activity				0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.0832)|Lung(200;0.156)		GAGCTTCCACCAGGTGTGAGC	0.647000													58	91					0	0	0.000781405	0	0
OR51S1	119692	broad.mit.edu	37	11	4869859	4869859	+	Missense_Mutation	SNP	G	A	A	rs142743963	byFrequency	TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:4869859G>A	uc010qyo.1	-	1	580	c.580C>T	c.(580-582)CGT>TGT	p.R194C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCCAAACGAGCCACATCT	0.552000													37	36					0	0	0.000814825	0	0
OR51G1	79324	broad.mit.edu	37	11	4944713	4944713	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:4944713G>A	uc010qyr.1	-	1	857	c.857C>T	c.(856-858)CCA>CTA	p.P286L		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATAAGGGGTGGTACCAGCAG	0.453000													22	73					0	0	0.000375601	0	0
OR52H1	390067	broad.mit.edu	37	11	5566278	5566278	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:5566278C>T	uc010qzh.1	-	1	476	c.476G>A	c.(475-477)CGA>CAA	p.R159Q	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGAAGCTTCGAAAGGAGAT	0.463000													16	28					0	0	0.000422831	0	0
OR10A2	341276	broad.mit.edu	37	11	6891546	6891546	+	Silent	SNP	C	T	T	rs144699545		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:6891546C>T	uc001meu.1	+	1	561	c.561C>T	c.(559-561)ATC>ATT	p.I187I		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	187	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCTACGCCATCGTCGGAACCA	0.517000													32	113					0	0	0.00058488	0	0
OR5P2	120065	broad.mit.edu	37	11	7818447	7818447	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:7818447A>G	uc001mfp.1	-	1	43	c.43T>C	c.(43-45)TTC>CTC	p.F15L		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATAGGATGAACCCCGTCAGA	0.413000													6	48					0	0	8.12818e-05	0	0
OR5P3	120066	broad.mit.edu	37	11	7846717	7846717	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:7846717G>A	uc010rbg.1	-	1	803	c.803C>T	c.(802-804)ACT>ATT	p.T268I		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTTCTGGTCAGTTGAGTAGCT	0.517000													16	43					0	0	0.000566183	0	0
USP47	55031	broad.mit.edu	37	11	11913531	11913531	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:11913531G>C	uc001mjq.1	+	5	1197	c.434G>C	c.(433-435)GGG>GCG	p.G145A	USP47_uc001mjr.2_Missense_Mutation_p.G57A|USP47_uc001mjs.2_Missense_Mutation_p.G125A	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	145					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TCCAGTGCTGGGGAAGACAGT	0.423000													4	98					0	0	0.00024832	0	0
CALCB	797	broad.mit.edu	37	11	15096275	15096275	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:15096275G>A	uc001mlx.1	+	2	84	c.11G>A	c.(10-12)CGG>CAG	p.R4Q	CALCB_uc009ygr.1_Missense_Mutation_p.R4Q	NM_000728	NP_000719	P10092	CALCB_HUMAN	calcitonin-related polypeptide, beta precursor	4					cellular calcium ion homeostasis|signal transduction|vasodilation	extracellular region|soluble fraction	neuropeptide hormone activity				0						ATGGGTTTCCGGAAGTTCTCC	0.473000											OREG0020793	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	30					0	0	0.000978159	0	0
CALCB	797	broad.mit.edu	37	11	15098881	15098881	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:15098881C>T	uc001mlx.1	+	4	347	c.274C>T	c.(274-276)CGG>TGG	p.R92W	CALCB_uc009ygr.1_Missense_Mutation_p.R92W	NM_000728	NP_000719	P10092	CALCB_HUMAN	calcitonin-related polypeptide, beta precursor	92					cellular calcium ion homeostasis|signal transduction|vasodilation	extracellular region|soluble fraction	neuropeptide hormone activity				0						TGTGACTCATCGGCTGGCAGG	0.567000													15	32					0	0	0.000422831	0	0
ABCC8	6833	broad.mit.edu	37	11	17434947	17434947	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:17434947C>T	uc001mnc.2	-	20	2595	c.2469G>A	c.(2467-2469)GGG>GGA	p.G823G		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	823	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TAACCCGTTCCCCAATCTGGG	0.552000													45	167					0	0	0.000781405	0	0
LUZP2	338645	broad.mit.edu	37	11	24753676	24753676	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:24753676G>A	uc001mqs.2	+	3	427	c.193G>A	c.(193-195)GAT>AAT	p.D65N	LUZP2_uc009yif.2_5'UTR|LUZP2_uc009yig.2_Missense_Mutation_p.D65N	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	65	Potential.					extracellular region				ovary(1)|skin(1)	2						CTTAAAAAACGATGAGCAGTC	0.338000													11	11					0	0	0.00185496	0	0
KIF18A	81930	broad.mit.edu	37	11	28104458	28104458	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:28104458C>T	uc001msc.2	-	9	1389	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	403	Potential.				blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						TGGTCATTTTCATTAGTGAAG	0.274000													13	47					0	0	0.000308642	0	0
OR4C3	256144	broad.mit.edu	37	11	48347263	48347263	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:48347263G>A	uc010rhv.1	+	1	771	c.771G>A	c.(769-771)GGG>GGA	p.G257G		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGCAGATGGGAGATGCAAAG	0.473000													9	70					0	0	0.000442599	0	0
OR4S2	219431	broad.mit.edu	37	11	55418983	55418983	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:55418983G>A	uc001nhs.1	+	1	604	c.604G>A	c.(604-606)GGT>AGT	p.G202S		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				AGCCAACAGTGGTACCATTGC	0.458000													68	67					0	0	0.000781405	0	0
P2RX3	5024	broad.mit.edu	37	11	57115699	57115699	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:57115699C>T	uc001nju.2	+	5	523	c.447C>T	c.(445-447)ATC>ATT	p.I149I		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	149	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CCTGTGAGATCCAGGGCTGGT	0.582000													5	7					0	0	0.000602214	0	0
GLYAT	10249	broad.mit.edu	37	11	58478166	58478166	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:58478166T>C	uc001nnb.2	-	5	540	c.385A>G	c.(385-387)ACA>GCA	p.T129A	GLYAT_uc001nnc.2_Missense_Mutation_p.T129A	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	129					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	ATGCGTTGTGTTTGTTTGACT	0.423000													27	96					0	0	0.000878237	0	0
GIF	2694	broad.mit.edu	37	11	59611434	59611434	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:59611434C>T	uc001noi.2	-	2	222	c.174G>A	c.(172-174)CTG>CTA	p.L58L	GIF_uc010rkz.1_Silent_p.L58L	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	58					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						TCATGGCAATCAGGATGCTGG	0.542000													23	24					0	0	0.00047179	0	0
AHNAK	79026	broad.mit.edu	37	11	62287339	62287339	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:62287339G>A	uc001ntl.2	-	5	14850	c.14550C>T	c.(14548-14550)TCC>TCT	p.S4850S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4850					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CATCAGGTATGGAGATCTTGG	0.433000													20	71					0	0	0.000295444	0	0
AHNAK	79026	broad.mit.edu	37	11	62300296	62300296	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:62300296G>A	uc001ntl.2	-	5	1893	c.1593C>T	c.(1591-1593)GGC>GGT	p.G531G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	531					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCACTTGAGGGCCTTTAACAT	0.507000													37	76					0	0	0.00111076	0	0
GPR152	390212	broad.mit.edu	37	11	67219614	67219614	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:67219614C>T	uc001olm.2	-	1	587	c.582G>A	c.(580-582)AGG>AGA	p.R194R	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	194	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCTCCAGCATCCTCAGCGACA	0.657000													10	30					0	0	0.000978159	0	0
UNC93B1	81622	broad.mit.edu	37	11	67770569	67770569	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:67770569G>T	uc001omw.1	-	3	395	c.315C>A	c.(313-315)CCC>CCA	p.P105P		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	105					innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						TGTCGATGTCGGGCAGCCCCA	0.622000													5	20					0.00116845	0.008269	0.00116845	1	0
MTL5	9633	broad.mit.edu	37	11	68517742	68517742	+	Silent	SNP	T	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:68517742T>A	uc001ooc.2	-	2	527	c.387A>T	c.(385-387)CTA>CTT	p.L129L	MTL5_uc001ood.1_Silent_p.L129L|MTL5_uc009ysi.1_Silent_p.L129L|MTL5_uc001ooe.2_Silent_p.L129L	NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	129					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			GGTGCGCGGGTAGCAGCGAGG	0.721000													4	12					0	0	0.00116845	0	0
CLPB	81570	broad.mit.edu	37	11	72018283	72018283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:72018283G>A	uc001osj.2	-	10	1222	c.1172C>T	c.(1171-1173)GCC>GTC	p.A391V	CLPB_uc010rqx.1_Missense_Mutation_p.A346V|CLPB_uc010rqy.1_Missense_Mutation_p.A332V|CLPB_uc001osk.2_Missense_Mutation_p.A361V|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Missense_Mutation_p.A190V|CLPB_uc001osi.2_5'UTR	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	391					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TGTCTGCTTGGCCAGCTCTGT	0.463000													74	228					0	0	0.000781405	0	0
ME3	10873	broad.mit.edu	37	11	86267657	86267657	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:86267657G>A	uc001pbz.2	-	3	659	c.405C>T	c.(403-405)ATC>ATT	p.I135I	ME3_uc001pca.2_Silent_p.I135I|ME3_uc009yvk.2_Silent_p.I135I|ME3_uc010rtr.1_RNA	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	135					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	GCGTGTACACGATTGGCATGA	0.587000													9	17					0	0	0.000274275	0	0
FAT3	120114	broad.mit.edu	37	11	92525958	92525958	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:92525958G>A	uc001pdj.3	+	8	4654	c.4637G>A	c.(4636-4638)CGA>CAA	p.R1546Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1546	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCCTTATCGAAGAAACTTG	0.358000										TCGA Ovarian(4;0.039)			108	297					0	0	0.000781405	0	0
EXPH5	23086	broad.mit.edu	37	11	108382857	108382857	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:108382857G>A	uc001pkk.2	-	6	3488	c.3377C>T	c.(3376-3378)CCC>CTC	p.P1126L	EXPH5_uc010rvy.1_Missense_Mutation_p.P938L|EXPH5_uc010rvz.1_Missense_Mutation_p.P970L|EXPH5_uc010rwa.1_Missense_Mutation_p.P1050L	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1126					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CTCCCCTGAGGGACATGACAT	0.483000													27	35					0	0	0.00106085	0	0
NCAM1	4684	broad.mit.edu	37	11	113130986	113130986	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:113130986G>A	uc001pns.2	+	2	244	c.212G>A	c.(211-213)GGA>GAA	p.G71E				P13591	NCAM1_HUMAN	SubName: Full=cDNA FLJ52974, highly similar to Neural cell adhesion molecule 1, 140 kDa isoform;	691	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		AACCAGCAAGGAAAATCCAAG	0.547000													22	63					0	0	0.000586117	0	0
DRD2	1813	broad.mit.edu	37	11	113281470	113281470	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:113281470G>A	uc001pnz.2	-	7	1632	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F	DRD2_uc010rwv.1_Silent_p.F436F|DRD2_uc001poa.3_Silent_p.F437F|DRD2_uc001pob.3_Silent_p.F408F	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	437	Cytoplasmic (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GGATCTTCAGGAAGGCCTTGC	0.622000													23	76					0	0	0.000586117	0	0
UBE4A	9354	broad.mit.edu	37	11	118245634	118245634	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:118245634G>A	uc001psw.2	+	9	1269	c.1140G>A	c.(1138-1140)AAG>AAA	p.K380K	UBE4A_uc001psv.2_Silent_p.K387K	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	380					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TCCACGAAAAGATCTACCAGA	0.438000													12	47					0	0	0.000219431	0	0
TECTA	7007	broad.mit.edu	37	11	120983847	120983847	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:120983847G>A	uc010rzo.1	+	4	553	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	185	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAATTATTACGAAATCAACTG	0.572000											OREG0021430	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	35					0	0	0.00047179	0	0
TMEM225	338661	broad.mit.edu	37	11	123755310	123755310	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:123755310G>A	uc001pzi.2	-	2	423	c.215C>T	c.(214-216)TCG>TTG	p.S72L		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	72						integral to membrane		p.S72S(1)		upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						GCCAAGGCTCGACGTCATCAT	0.408000													26	32					0	0	0.000720815	0	0
SLC37A2	219855	broad.mit.edu	37	11	124951319	124951319	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:124951319C>T	uc001qbn.2	+	8	948	c.697C>T	c.(697-699)CCA>TCA	p.P233S	SLC37A2_uc010sau.1_Missense_Mutation_p.P233S|SLC37A2_uc010sav.1_5'Flank|SLC37A2_uc001qbp.2_5'Flank	NM_001145290	NP_001138762	Q8TED4	SPX2_HUMAN	solute carrier family 37 (glycerol-3-phosphate	233					carbohydrate transport|transmembrane transport	integral to membrane				ovary(2)	2	all_hematologic(175;0.215)	Breast(109;0.012)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.152)|all_lung(97;0.159)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0384)		TTTTCTAGACCCAGAAGATGT	0.587000													11	43					0	0	0.000673444	0	0
C11orf45	219833	broad.mit.edu	37	11	128773324	128773324	+	Silent	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr11:128773324T>C	uc001qeu.2	-	3	413	c.219A>G	c.(217-219)GTA>GTG	p.V73V	KCNJ5_uc001qet.2_Intron|KCNJ5_uc009zck.2_Intron|C11orf45_uc009zcl.2_Silent_p.V73V|C11orf45_uc001qev.2_Silent_p.V73V	NM_145013	NP_659450	Q8TAV5	CK045_HUMAN	hypothetical protein LOC219833 precursor	73						extracellular region					0	all_hematologic(175;0.0641)	Lung NSC(97;0.00521)|Breast(109;0.00715)|all_lung(97;0.0111)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.00531)|LUSC - Lung squamous cell carcinoma(976;0.0193)|Lung(977;0.0195)		AGGTTCTGGTTACTATGGCAT	0.498000													12	30					0	0	0.00185496	0	0
CACNA1C	775	broad.mit.edu	37	12	2706447	2706447	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:2706447G>T	uc009zdu.1	+	21	3158	c.2845G>T	c.(2845-2847)GCT>TCT	p.A949S	CACNA1C_uc009zdv.1_Missense_Mutation_p.A946S|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkd.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkg.2_Missense_Mutation_p.A949S|CACNA1C_uc009zdw.1_Missense_Mutation_p.A949S|CACNA1C_uc001qkh.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkl.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Missense_Mutation_p.A949S|CACNA1C_uc001qks.2_Missense_Mutation_p.A949S|CACNA1C_uc001qkt.2_Missense_Mutation_p.A949S|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Missense_Mutation_p.A685S|CACNA1C_uc001qkj.1_Missense_Mutation_p.A685S|CACNA1C_uc001qkk.1_Missense_Mutation_p.A685S|CACNA1C_uc001qkm.1_Missense_Mutation_p.A685S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	949	III.|Helical; Name=S2 of repeat III; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CATTGAAATTGCTCTGAAGGT	0.488000													21	105					4.16121e-05	0.00029831	0.000375601	1	0
ANO2	57101	broad.mit.edu	37	12	5708689	5708689	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:5708689C>T	uc001qnm.2	-	21	2266	c.2194G>A	c.(2194-2196)GAA>AAA	p.E732K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	737	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GTGTATGGTTCCAAGCTGTAG	0.507000													48	78					0	0	0.000781405	0	0
C1R	715	broad.mit.edu	37	12	7187920	7187920	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:7187920G>T	uc010sfy.1	-	10	2093	c.2034C>A	c.(2032-2034)ATC>ATA	p.I678I		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	678	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGCTGCACCCGATGCCCCAGG	0.577000													13	31					1.3612e-06	9.86068e-06	0.000308642	1	0
CD163	9332	broad.mit.edu	37	12	7639582	7639582	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:7639582C>T	uc001qsz.3	-	9	2179	c.2051G>A	c.(2050-2052)GGA>GAA	p.G684E	CD163_uc001qta.3_Missense_Mutation_p.G684E|CD163_uc009zfw.2_Missense_Mutation_p.G717E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	684	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GGACTGGTTTCCTGCAAACAC	0.458000													18	19					0	0	0.00074312	0	0
LOC653113	653113	broad.mit.edu	37	12	8386965	8386966	+	RNA	DNP	CC	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:8386965_8386966CC>TT	uc010sgk.1	-	4		c.490_491GG>AA				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						TGGCAGGCAGCCAGCCTCCGCA	0.599000													6	48					0	0	6.4e-05	0	0
A2ML1	144568	broad.mit.edu	37	12	9002864	9002864	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:9002864C>T	uc001quz.3	+	18	2326	c.2228C>T	c.(2227-2229)CCT>CTT	p.P743L	A2ML1_uc001qva.1_Missense_Mutation_p.P323L|A2ML1_uc010sgm.1_Missense_Mutation_p.P243L	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	587						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GATCTGTTTCCTATTGGGTAA	0.318000													12	38					0	0	0.000978159	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906414	13906414	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:13906414C>T	uc001rbt.2	-	3	1026	c.847G>A	c.(847-849)GAT>AAT	p.D283N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	283	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCCCATTCATCATATGATACA	0.547000													9	31					0	0	0.000274275	0	0
C12orf60	144608	broad.mit.edu	37	12	14976313	14976313	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:14976313C>T	uc001rcj.3	+	2	648	c.444C>T	c.(442-444)ATC>ATT	p.I148I		NM_175874	NP_787070	Q5U649	CL060_HUMAN	hypothetical protein LOC144608	148										ovary(1)|central_nervous_system(1)	2						AATTCCCCATCATGAATCTTC	0.423000													12	47					0	0	0.000978159	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891837	18891837	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:18891837G>A	uc001rdy.2	+	1	793	c.635G>A	c.(634-636)AGC>AAC	p.S212N	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	212					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				CTGAAAGAAAGCTTGGAAATA	0.403000													13	43					0	0	0.00136819	0	0
PDE3A	5139	broad.mit.edu	37	12	20766445	20766445	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:20766445C>T	uc001reh.1	+	3	1102	c.1080C>T	c.(1078-1080)CTC>CTT	p.L360L		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	360				HGLITDLLADPSLPPNVC -> TASLPTSWQTLLFHQTCA (in Ref. 3 and 4).	lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TTACCGACCTCCTGGCAGACC	0.552000													19	67					0	0	0.000958276	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27832573	27832573	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:27832573G>A	uc001ric.1	+	19	2161	c.1784_splice	c.e19+1	p.K595_splice	PPFIBP1_uc010sjr.1_Splice_Site_p.K426_splice|PPFIBP1_uc001rib.1_Splice_Site_p.K589_splice|PPFIBP1_uc001ria.2_Splice_Site_p.K564_splice|PPFIBP1_uc001rid.1_Splice_Site_p.K442_splice|PPFIBP1_uc001rif.1_Splice_Site_p.K102_splice	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1						cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TCTTTGGAAAGTAAGTAAAGC	0.438000													17	69					0	0	0.000422831	0	0
MLL2	8085	broad.mit.edu	37	12	49445377	49445377	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:49445377G>A	uc001rta.3	-	10	2089	c.2089C>T	c.(2089-2091)CCC>TCC	p.P697S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	697	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGGATGTGGGGGAGTCCTCA	0.652000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			10	44					0	0	0.000978159	0	0
ITGA7	3679	broad.mit.edu	37	12	56090798	56090798	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:56090798G>A	uc001shh.2	-	12	1854	c.1634C>T	c.(1633-1635)CCC>CTC	p.P545L	ITGA7_uc001shg.2_Missense_Mutation_p.P541L|ITGA7_uc010sps.1_Missense_Mutation_p.P448L|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.P422L	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	585	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CGTCACACGGGGAACCTGGCC	0.622000													12	9					0	0	0.00136819	0	0
ESYT1	23344	broad.mit.edu	37	12	56532030	56532030	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:56532030C>A	uc001sjq.2	+	21	2361	c.2311C>A	c.(2311-2313)CGT>AGT	p.R771S	ESYT1_uc001sjr.2_Missense_Mutation_p.R781S	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	771						integral to membrane				ovary(4)|skin(1)	5						TCTCACCCCCCGTCCCACTGC	0.602000													5	88					0.000602214	0.00428379	0.000602214	1	0
C12orf50	160419	broad.mit.edu	37	12	88420737	88420737	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:88420737C>T	uc001tam.1	-	2	171	c.3G>A	c.(1-3)ATG>ATA	p.M1I	C12orf50_uc001tan.2_Missense_Mutation_p.M55I	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	1										skin(2)|ovary(1)	3						CCTGCATTTCCATGTGTCTAA	0.388000													20	60					0	0	0.000295444	0	0
ATXN2	6311	broad.mit.edu	37	12	111956184	111956184	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:111956184G>A	uc001tsj.2	-	9	1676	c.1514C>T	c.(1513-1515)TCC>TTC	p.S505F	ATXN2_uc001tsh.2_Missense_Mutation_p.S240F|ATXN2_uc001tsi.2_Missense_Mutation_p.S216F|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.S240F	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	505					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						ACTTCCCCAGGATATGACTTC	0.428000													44	39					0	0	0.000589545	0	0
GCN1L1	10985	broad.mit.edu	37	12	120574381	120574381	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:120574381G>A	uc001txo.2	-	51	6946	c.6933C>T	c.(6931-6933)ATC>ATT	p.I2311I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2311					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCAGGATGCGGATCAGAGGGC	0.592000													13	32					0	0	0.00136819	0	0
GLT1D1	144423	broad.mit.edu	37	12	129442128	129442128	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr12:129442128C>T	uc010tbh.1	+	12	843	c.834C>T	c.(832-834)ATC>ATT	p.I278I	GLT1D1_uc001uhx.1_Silent_p.I193I|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	273					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		CCAGGAACATCCCCGGGAATG	0.498000													5	32					0	0	0.000602214	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751283	19751283	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr13:19751283C>T	uc009zzj.2	-	4	889	c.840G>A	c.(838-840)AAG>AAA	p.K280K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	280					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CGTGGTAGGCCTTCTCGGCTG	0.602000													38	26					0	0	0.00128727	0	0
CENPJ	55835	broad.mit.edu	37	13	25484175	25484175	+	Silent	SNP	T	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr13:25484175T>A	uc001upt.3	-	4	871	c.618A>T	c.(616-618)GGA>GGT	p.G206G	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	206					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		TGGTGGTATTTCCTGGAGACC	0.458000													48	24					0	0	0.000781405	0	0
BRCA2	675	broad.mit.edu	37	13	32912842	32912842	+	Silent	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr13:32912842T>C	uc001uub.1	+	11	4577	c.4350T>C	c.(4348-4350)TTT>TTC	p.F1450F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	1450	BRCA2 3.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TAAATTTCTTTGATCAGAAAC	0.289000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			95	46					0	0	0.000781405	0	0
OR11H12	440153	broad.mit.edu	37	14	19378043	19378043	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:19378043C>T	uc010tkp.1	+	1	450	c.450C>T	c.(448-450)ATC>ATT	p.I150I		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	150	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTAATATCATGACTGGGC	0.458000													10	234					0	0	0.000566183	0	0
NOVA1	4857	broad.mit.edu	37	14	26917366	26917366	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:26917366C>T	uc001wpy.2	-	5	1641	c.1323G>A	c.(1321-1323)GGG>GGA	p.G441G	NOVA1_uc001wpz.2_Silent_p.G417G|NOVA1_uc001wqa.2_Silent_p.G319G	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	444	KH 3.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		CTAATGTTTTCCCTCCTTTGC	0.433000													17	12					0	0	0.000566183	0	0
MIA2	117153	broad.mit.edu	37	14	39721990	39721990	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:39721990G>A	uc001wux.2	+	5	1800	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K		NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	145						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GAGAATTCACGAAGAAGTATA	0.378000													49	41					0	0	0.000781405	0	0
ESR2	2100	broad.mit.edu	37	14	64699862	64699862	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:64699862G>A	uc001xha.1	-	9	2054	c.1586C>T	c.(1585-1587)TCT>TTT	p.S529F	ESR2_uc001xgu.2_Intron|ESR2_uc001xgv.2_Intron|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Intron|ESR2_uc001xgy.1_Intron|ESR2_uc001xgz.1_3'UTR|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.S438F	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	529	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	GCGTCACTGAGACTGTGGGTT	0.602000													16	10					0	0	0.000422831	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634093	70634093	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:70634093C>T	uc001xly.2	-	2	1801	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K	SLC8A3_uc001xlw.2_Silent_p.K349K|SLC8A3_uc001xlx.2_Silent_p.K349K|SLC8A3_uc001xlz.2_Silent_p.K349K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	349	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AGGCACGGCTCTTCTGTTGGT	0.493000													36	21					0	0	0.00195071	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713473	70713473	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:70713473G>A	uc010ttg.1	-	1	1046	c.395C>T	c.(394-396)TCA>TTA	p.S132L		NR_003951				SubName: Full=ADAM21-like protein;												0						ACTTATAAGTGAATTTTTTAT	0.383000													45	31					0	0	0.000680045	0	0
ADAM21	8747	broad.mit.edu	37	14	70926041	70926041	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:70926041G>A	uc001xmd.2	+	1	1825	c.1825G>A	c.(1825-1827)GAT>AAT	p.D609N		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	609	Cys-rich.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGAAGTGAAAGATGGTACTGT	0.428000													23	15					0	0	0.00047179	0	0
HEATR4	399671	broad.mit.edu	37	14	73962038	73962038	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:73962038C>T	uc010tua.1	-	16	2948	c.2538G>A	c.(2536-2538)GAG>GAA	p.E846E		NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		CCATGACCATCTCCAGCTTGA	0.373000													24	9					0	0	0.000878237	0	0
RPS6KL1	83694	broad.mit.edu	37	14	75377988	75377988	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:75377988G>A	uc010tux.1	-	6	1155	c.627C>T	c.(625-627)AGC>AGT	p.S209S	RPS6KL1_uc001xqx.1_5'Flank|RPS6KL1_uc001xqw.2_Silent_p.S178S|RPS6KL1_uc010asd.1_RNA|RPS6KL1_uc001xqy.1_Silent_p.S209S	NM_031464	NP_113652	Q9Y6S9	RPKL1_HUMAN	ribosomal protein S6 kinase-like 1	209	Protein kinase.					ribosome	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00658)		TGGAGTCCTCGCTCACAAAGT	0.607000													16	27					0	0	0.00074312	0	0
FAM181A	90050	broad.mit.edu	37	14	94394883	94394883	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:94394883C>T	uc001ybz.1	+	3	745	c.438C>T	c.(436-438)GGC>GGT	p.G146G	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.G84G|FAM181A_uc001yca.1_Silent_p.G84G	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	146											0						TGGATTTGGGCCCTGATTCCA	0.652000													6	4					0	0	8.12818e-05	0	0
SERPINA3	12	broad.mit.edu	37	14	95085667	95085667	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:95085667C>T	uc001ydp.2	+	3	858	c.779C>T	c.(778-780)TCC>TTC	p.S260F	SERPINA3_uc001ydo.3_Missense_Mutation_p.S285F|SERPINA3_uc001ydr.2_Intron|SERPINA3_uc001ydq.2_Missense_Mutation_p.S260F|SERPINA3_uc001yds.2_Missense_Mutation_p.S260F|SERPINA3_uc010avg.2_Missense_Mutation_p.S260F	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	260					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GAGGAGCTGTCCTGCACCGTG	0.517000													16	10					0	0	0.000308642	0	0
MARK3	4140	broad.mit.edu	37	14	103946816	103946816	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:103946816C>T	uc001ymz.3	+	14	2241	c.1575C>T	c.(1573-1575)GGC>GGT	p.G525G	MARK3_uc001ymx.3_Silent_p.G525G|MARK3_uc001ymw.3_Silent_p.G525G|MARK3_uc001yna.3_Silent_p.G509G|MARK3_uc001ymy.3_Silent_p.G446G|MARK3_uc010awp.2_Silent_p.G548G|MARK3_uc010tyb.1_Silent_p.G320G|MARK3_uc010awq.2_Silent_p.G55G	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	525							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			TTCAGAATGGCAAAGAAAACA	0.358000													61	22					0	0	0.000781405	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408500	105408500	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr14:105408500C>T	uc010axc.1	-	7	13408	c.13288G>A	c.(13288-13290)GAG>AAG	p.E4430K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E4330K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4430						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATGTCCACCTCCATGCTGGGC	0.607000													47	14					0	0	0.000589545	0	0
Unknown	0	broad.mit.edu	37	15	20496687	20496687	+	RNA	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:20496687A>G	uc001ytf.1	+	6		c.740A>G								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTGTTGTGAACTCCATGGTT	0.423000													7	77					0	0	0.000157383	0	0
HERC2	8924	broad.mit.edu	37	15	28389360	28389360	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:28389360T>C	uc001zbj.2	-	73	11268	c.11162A>G	c.(11161-11163)GAC>GGC	p.D3721G		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3721					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GACGCAGCGGTCAGAGAGGAG	0.537000													27	33					0	0	0.00127121	0	0
RYR3	6263	broad.mit.edu	37	15	33840330	33840330	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:33840330G>A	uc001zhi.2	+	9	811	c.741_splice	c.e9-1	p.R247_splice	RYR3_uc010bar.2_Splice_Site_p.R247_splice	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3						cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTGCTCACAGGAGGATATTC	0.552000													4	11					0	0	0.000602214	0	0
C15orf52	388115	broad.mit.edu	37	15	40632145	40632145	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:40632145G>A	uc001zlh.3	-	2	232	c.216C>T	c.(214-216)GCC>GCT	p.A72A	C15orf52_uc001zli.1_5'UTR|C15orf52_uc010ucn.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	72	Potential.									large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		TCTTGCGCAGGGCAACTATCC	0.637000													8	33					0	0	0.000442599	0	0
DISP2	85455	broad.mit.edu	37	15	40657833	40657833	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:40657833G>A	uc001zlk.1	+	7	941	c.852G>A	c.(850-852)AAG>AAA	p.K284K		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	284					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		TTGCAGAGAAGAGCTATGCAA	0.567000													47	47					0	0	0.000781405	0	0
VPS18	57617	broad.mit.edu	37	15	41192989	41192989	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:41192989A>G	uc001zne.2	+	4	2312	c.1973A>G	c.(1972-1974)GAG>GGG	p.E658G		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	658	Clathrin.				endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		GTGCTGGGGGAGACTGAGCAG	0.632000													3	57					0	0	6.4e-05	0	0
SPTBN5	51332	broad.mit.edu	37	15	42171971	42171971	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:42171971G>A	uc001zos.2	-	15	3131	c.2798C>T	c.(2797-2799)TCC>TTC	p.S933F		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	968	Spectrin 7.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GATTTGTGTGGAGTTCCCAGG	0.587000													34	33					0	0	0.00058488	0	0
TGM7	116179	broad.mit.edu	37	15	43585097	43585097	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:43585097G>A	uc001zrf.1	-	3	254	c.249C>T	c.(247-249)GTC>GTT	p.V83V		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	83					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	TCCCGGGCTGGACCCGGGTGA	0.537000													67	66					0	0	0.000781405	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43826984	43826984	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:43826984G>A	uc001zrw.2	-	31	4373	c.4190C>T	c.(4189-4191)ACT>ATT	p.T1397I	PPIP5K1_uc001zrx.1_Missense_Mutation_p.T1370I|PPIP5K1_uc001zru.2_Missense_Mutation_p.T1372I|PPIP5K1_uc001zry.3_Missense_Mutation_p.T1372I|PPIP5K1_uc001zrv.2_Missense_Mutation_p.T1158I	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1397					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						GATCGCAGAAGTCTCCTGGGC	0.547000													24	50					0	0	0.000295444	0	0
ATP8B4	79895	broad.mit.edu	37	15	50264878	50264878	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:50264878C>T	uc001zxu.2	-	13	1286	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	ATP8B4_uc010ber.2_Missense_Mutation_p.E255K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E255K|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	382	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGCCCCAGTTCCTCATTGAGC	0.423000													18	20					0	0	0.00074312	0	0
DMXL2	23312	broad.mit.edu	37	15	51758421	51758421	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:51758421C>T	uc002abf.2	-	30	7702	c.7477G>A	c.(7477-7479)GAT>AAT	p.D2493N	DMXL2_uc002abd.2_Missense_Mutation_p.D564N|DMXL2_uc010ufy.1_Missense_Mutation_p.D2494N|DMXL2_uc010bfa.2_Missense_Mutation_p.D1857N	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2493						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATTTGTGTATCTGAAAAAAAG	0.318000													18	97					0	0	0.000958276	0	0
MYO9A	4649	broad.mit.edu	37	15	72190602	72190602	+	Silent	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:72190602T>C	uc002atl.3	-	25	4715	c.4242A>G	c.(4240-4242)TCA>TCG	p.S1414S	MYO9A_uc010biq.2_Silent_p.S1034S|MYO9A_uc002atn.1_Silent_p.S1395S|MYO9A_uc002atk.2_Silent_p.S138S|MYO9A_uc002atm.1_Silent_p.S138S	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1414	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GTAGACTATTTGAAATGAAGG	0.388000													25	21					0	0	0.00106085	0	0
HOMER2	9455	broad.mit.edu	37	15	83523433	83523433	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:83523433G>A	uc002bjg.2	-	6	833	c.647C>T	c.(646-648)TCC>TTC	p.S216F	HOMER2_uc002bjh.2_Missense_Mutation_p.S205F|HOMER2_uc002bjj.2_Intron|HOMER2_uc002bji.2_Intron	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	216	Potential.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						ACGGCAGATGGAGAACTGCCT	0.627000													7	15					0	0	0.000157383	0	0
C15orf42	90381	broad.mit.edu	37	15	90137730	90137730	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:90137730G>A	uc002boe.2	+	6	1626	c.1626G>A	c.(1624-1626)CAG>CAA	p.Q542Q		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	542					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AGCTCTACCAGAGAAAATCTC	0.408000													36	30					0	0	0.000814825	0	0
CHD2	1106	broad.mit.edu	37	15	93528899	93528899	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:93528899C>T	uc002bsp.2	+	26	3984	c.3409C>T	c.(3409-3411)CGA>TGA	p.R1137*	CHD2_uc002bso.1_Nonsense_Mutation_p.R1137*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1137					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TGCAGAGATCCGAAGGTTGGT	0.527000													31	72					0	0	0.00058488	0	0
IGF1R	3480	broad.mit.edu	37	15	99251218	99251218	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr15:99251218C>T	uc002bul.2	+	2	572	c.522C>T	c.(520-522)CCC>CCT	p.P174P	IGF1R_uc010urq.1_Silent_p.P174P|IGF1R_uc010bon.2_Silent_p.P174P	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	174					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GGAATAAGCCCCCAAAGGAAT	0.517000													29	51					0	0	0.00127121	0	0
DECR2	26063	broad.mit.edu	37	16	461434	461434	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:461434C>T	uc002chb.2	+	8	841	c.735C>T	c.(733-735)ATC>ATT	p.I245I	DECR2_uc002chc.2_Silent_p.I161I|DECR2_uc010bqv.2_Silent_p.I161I|DECR2_uc002chd.2_Silent_p.I161I|DECR2_uc002che.1_RNA	NM_020664	NP_065715	Q9NUI1	DECR2_HUMAN	2,4-dienoyl CoA reductase 2	245						peroxisome	2,4-dienoyl-CoA reductase (NADPH) activity|binding				0		Hepatocellular(16;0.00015)				AGACCGAGATCGCCCACAGCG	0.677000													9	28					0	0	0.000442599	0	0
PPL	5493	broad.mit.edu	37	16	4934437	4934437	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:4934437C>T	uc002cyd.1	-	22	4309	c.4219G>A	c.(4219-4221)GAG>AAG	p.E1407K		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1407	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CGCTCGCGCTCTAGCTCCTCC	0.697000													23	25					0	0	0.000375601	0	0
MIR193B	574455	broad.mit.edu	37	16	14397839	14397839	+	RNA	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:14397839G>A	hsa-mir-193b|MI0003137	+			c.16G>A																				0						CTCAGAATCGGGGTTTTGAGG	0.562000													63	78					0	0	0.000781405	0	0
VWA3A	146177	broad.mit.edu	37	16	22132863	22132863	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:22132863G>A	uc010vbq.1	+	14	1377	c.1281G>A	c.(1279-1281)CTG>CTA	p.L427L	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Silent_p.L414L	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	427						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		ATCAGGTCCTGGCACCCAATG	0.408000													71	81					0	0	0.000781405	0	0
BCKDK	10295	broad.mit.edu	37	16	31121091	31121091	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:31121091C>T	uc002eaw.3	+	4	678	c.362C>T	c.(361-363)ACC>ATC	p.T121I	BCKDK_uc002eav.3_Missense_Mutation_p.T121I|BCKDK_uc010cah.2_RNA|BCKDK_uc010cai.2_Missense_Mutation_p.T121I	NM_005881	NP_005872	O14874	BCKD_HUMAN	branched chain ketoacid dehydrogenase kinase	121					branched chain family amino acid catabolic process|peptidyl-histidine phosphorylation	mitochondrial alpha-ketoglutarate dehydrogenase complex	[3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity|ATP binding|protein binding|protein serine/threonine kinase activity|two-component sensor activity			stomach(1)|breast(1)	2						TGCAACCCCACCATACTGCAC	0.468000													9	27					0	0	0.000442599	0	0
AHSP	51327	broad.mit.edu	37	16	31539946	31539946	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:31539946C>T	uc002ecj.2	+	3	328	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	81					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CCAACCCTTTCCTGGCCAAGT	0.587000													12	15					0	0	0.000308642	0	0
CNOT1	23019	broad.mit.edu	37	16	58610468	58610468	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:58610468G>A	uc002env.2	-	14	1896	c.1603C>T	c.(1603-1605)CGC>TGC	p.R535C	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.R535C|CNOT1_uc002enx.2_Missense_Mutation_p.R535C|CNOT1_uc002enz.1_Intron	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	535					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		ATAAGTTGGCGAATTGAGGGA	0.408000													11	32					0	0	0.000673444	0	0
ST3GAL2	6483	broad.mit.edu	37	16	70422379	70422379	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:70422379G>A	uc002eyw.2	-	3	2712	c.604C>T	c.(604-606)CCT>TCT	p.P202S	ST3GAL2_uc002eyx.2_Missense_Mutation_p.P202S	NM_006927	NP_008858	Q16842	SIA4B_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	202	Lumenal (Potential).				amino sugar metabolic process	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity			ovary(1)	1		Ovarian(137;0.0694)				GCACTCTCAGGGTACATGAAA	0.592000													11	66					0	0	0.000978159	0	0
NECAB2	54550	broad.mit.edu	37	16	84027966	84027966	+	Missense_Mutation	SNP	C	T	T	rs79514285	byFrequency	TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr16:84027966C>T	uc002fhd.2	+	7	673	c.656C>T	c.(655-657)CCC>CTC	p.P219L	NECAB2_uc002fhe.2_Missense_Mutation_p.P136L	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	219					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						AGCCCCACTCCCGCCTCTGCC	0.617000													6	14					0	0	8.12818e-05	0	0
SCARF1	8578	broad.mit.edu	37	17	1538457	1538457	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:1538457C>T	uc002fsz.1	-	11	2138	c.2088G>A	c.(2086-2088)GGG>GGA	p.G696G	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Silent_p.G610G	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	696	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CGCGGGGCTTCCCTGCCAGCA	0.632000													21	25					0	0	0.000375601	0	0
NLRP1	22861	broad.mit.edu	37	17	5462137	5462137	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:5462137G>A	uc002gci.2	-	4	2434	c.1879C>T	c.(1879-1881)CAA>TAA	p.Q627*	NLRP1_uc002gcg.1_Nonsense_Mutation_p.Q627*|NLRP1_uc002gck.2_Nonsense_Mutation_p.Q627*|NLRP1_uc002gcj.2_Nonsense_Mutation_p.Q627*|NLRP1_uc002gcl.2_Nonsense_Mutation_p.Q627*|NLRP1_uc002gch.3_Nonsense_Mutation_p.Q627*|NLRP1_uc010clh.2_Nonsense_Mutation_p.Q627*	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	627	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				AAGAACTCTTGGAAACAGAGG	0.453000													11	37					0	0	0.000673444	0	0
KIAA0753	9851	broad.mit.edu	37	17	6513386	6513386	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:6513386C>T	uc002gde.3	-	9	1999	c.1640G>A	c.(1639-1641)CGG>CAG	p.R547Q	KIAA0753_uc010vtd.1_Missense_Mutation_p.R3Q|KIAA0753_uc010clo.2_Missense_Mutation_p.R248Q|KIAA0753_uc010vte.1_Missense_Mutation_p.R248Q	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	547						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		CACAGGCTGCCGGTTCATTTT	0.498000													38	46					0	0	0.00128727	0	0
BCL6B	255877	broad.mit.edu	37	17	6930932	6930932	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:6930932G>A	uc002geg.2	+	9	1491	c.1434G>A	c.(1432-1434)GGG>GGA	p.G478G	BCL6B_uc010clt.1_Silent_p.G479G	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	478						nucleus	zinc ion binding			skin(1)	1						TTCTCGGGGGGCCCTAGCTGA	0.622000													5	42					0	0	0.000602214	0	0
POLR2A	5430	broad.mit.edu	37	17	7401487	7401487	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:7401487C>T	uc002ghf.3	+	8	1527	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	POLR2A_uc002ghe.2_Silent_p.F431F	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	431					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				ACTTGCGTTTCCACCCCAAGC	0.557000													16	20					0	0	0.00121646	0	0
GUCY2D	3000	broad.mit.edu	37	17	7909741	7909741	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:7909741G>A	uc002gjt.2	+	4	1161	c.1087G>A	c.(1087-1089)GAA>AAA	p.E363K		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	363	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GGGCGTGGCAGAAGCGCGGGC	0.662000													25	27					0	0	0.00178596	0	0
MYH1	4619	broad.mit.edu	37	17	10404514	10404514	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:10404514C>T	uc002gmo.2	-	27	3745	c.3651G>A	c.(3649-3651)GTG>GTA	p.V1217V	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1217	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCTTCTGCTTCACTCGCTGCA	0.532000													29	34					0	0	0.00178596	0	0
MYH2	4620	broad.mit.edu	37	17	10432765	10432765	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:10432765G>A	uc010coi.2	-	25	3279	c.3151C>T	c.(3151-3153)CGC>TGC	p.R1051C	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R1051C|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1051	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGGTCCATGCGAAGTTTCTTT	0.383000													19	68					0	0	0.000375601	0	0
DNAH9	1770	broad.mit.edu	37	17	11642241	11642241	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:11642241C>T	uc002gne.2	+	29	5927	c.5859C>T	c.(5857-5859)TTC>TTT	p.F1953F	DNAH9_uc010coo.2_Silent_p.F1247F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1953	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGCAGTGGTTCAGCTTCCTTG	0.478000													14	49					0	0	0.00074312	0	0
MYOCD	93649	broad.mit.edu	37	17	12666495	12666495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:12666495C>T	uc002gnn.2	+	13	2650	c.2351C>T	c.(2350-2352)TCC>TTC	p.S784F	MYOCD_uc002gno.2_Missense_Mutation_p.S832F|MYOCD_uc002gnq.2_Missense_Mutation_p.S508F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	784					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCCTCGGCTTCCTTTGAACAA	0.507000													36	40					0	0	0.00148497	0	0
OSBPL7	114881	broad.mit.edu	37	17	45886793	45886793	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:45886793G>A	uc002ilx.1	-	19	2135	c.1932C>T	c.(1930-1932)GTC>GTT	p.V644V	OSBPL7_uc002ilw.1_Silent_p.V206V	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	644					lipid transport		lipid binding				0						GACCACTCAGGACATTGTGAA	0.547000													26	19					0	0	0.000339439	0	0
ACSF2	80221	broad.mit.edu	37	17	48540791	48540791	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:48540791C>T	uc002iqu.2	+	8	1028	c.924C>T	c.(922-924)CCC>CCT	p.P308P	ACSF2_uc010wml.1_Silent_p.P265P|ACSF2_uc010wmm.1_Silent_p.P333P|ACSF2_uc010wmn.1_Silent_p.P295P|ACSF2_uc010wmo.1_Silent_p.P148P	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	308					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			TGCCCAACCCCCTGTACCATT	0.582000													13	31					0	0	0.00185496	0	0
BRIP1	83990	broad.mit.edu	37	17	59924520	59924520	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:59924520C>T	uc002izk.1	-	6	710	c.569G>A	c.(568-570)GGA>GAA	p.G190E		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	190	ATP (By similarity).|Helicase ATP-binding.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TACAGTCTTTCCTGAATCAAC	0.343000			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				24	47					0	0	0.000295444	0	0
SLC39A11	201266	broad.mit.edu	37	17	70644968	70644968	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:70644968G>A	uc002jjb.2	-	9	1039	c.924C>T	c.(922-924)GAC>GAT	p.D308D	SLC39A11_uc002jja.2_Silent_p.D301D	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1	308					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						GGATGATGTCGTCCATGACCA	0.617000													6	16					0	0	0.000274275	0	0
SDK2	54549	broad.mit.edu	37	17	71335026	71335026	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:71335026A>C	uc010dfm.2	-	45	6219	c.6219T>G	c.(6217-6219)TTT>TTG	p.F2073L	SDK2_uc002jjt.3_Missense_Mutation_p.F1213L	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	2073	Cytoplasmic (Potential).				cell adhesion	integral to membrane				ovary(2)	2						AGTGGTTGACAAAGGAGTGGG	0.582000													14	16					0	0	0.000308642	0	0
RAB37	326624	broad.mit.edu	37	17	72667748	72667748	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:72667748C>T	uc010dfu.2	+	1	493	c.23C>T	c.(22-24)TCC>TTC	p.S8F	RAB37_uc002jlc.2_Missense_Mutation_p.S8F|RAB37_uc002jld.2_Missense_Mutation_p.S8F	NM_175738	NP_783865	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 3	Error:Variant_position_missing_in_Q96AX2_after_alignment					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						AGACCCGATTCCTACCAGGGA	0.612000													18	29					0	0	0.000375601	0	0
ITGB4	3691	broad.mit.edu	37	17	73736931	73736931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:73736931C>T	uc002jpg.2	+	22	2795	c.2608C>T	c.(2608-2610)CGG>TGG	p.R870W	ITGB4_uc002jph.2_Missense_Mutation_p.R870W|ITGB4_uc010dgo.2_Missense_Mutation_p.R870W|ITGB4_uc002jpi.3_Missense_Mutation_p.R870W|ITGB4_uc010dgp.1_Missense_Mutation_p.P882L|ITGB4_uc002jpj.2_Missense_Mutation_p.R870W	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	870	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GACCAAGTTCCGGTGAGTCCC	0.672000													8	19					0	0	0.000274275	0	0
SGSH	6448	broad.mit.edu	37	17	78184569	78184569	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:78184569G>A	uc002jxz.3	-	8	1278	c.1191C>T	c.(1189-1191)CCC>CCT	p.P397P	SGSH_uc002jya.3_Silent_p.P194P|SGSH_uc002jxy.2_3'UTR	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	397					proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCTGGTCGATGGGAAAGGGCA	0.607000													23	59					0	0	0.000375601	0	0
RPTOR	57521	broad.mit.edu	37	17	78820279	78820279	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:78820279C>T	uc002jyt.1	+	11	2024	c.1219C>T	c.(1219-1221)CCG>TCG	p.P407S	RPTOR_uc010wuf.1_Missense_Mutation_p.P222S|RPTOR_uc010wug.1_Missense_Mutation_p.P407S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	407					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GCAGCACAGCCCGTTCTTCGC	0.637000													30	30					0	0	0.000339439	0	0
CIDEA	1149	broad.mit.edu	37	18	12277224	12277224	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr18:12277224G>A	uc002kqt.3	+	5	680	c.615G>A	c.(613-615)CGG>CGA	p.R205R	CIDEA_uc002kqu.3_Silent_p.R239R|CIDEA_uc010dlc.2_RNA	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	205					DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						AGGAAGAGCGGCCATCCCTCC	0.577000													19	12					0	0	0.000295444	0	0
CD226	10666	broad.mit.edu	37	18	67562970	67562970	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr18:67562970C>T	uc010dqo.2	-	3	1141	c.694G>A	c.(694-696)GAA>AAA	p.E232K	CD226_uc002lkm.3_Missense_Mutation_p.E232K	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	232	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				ACGAAGGTTTCGTTTTCTCCT	0.562000													53	28					0	0	0.000781405	0	0
APC2	10297	broad.mit.edu	37	19	1466377	1466377	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:1466377G>A	uc002lsr.1	+	15	3285	c.3077G>A	c.(3076-3078)CGG>CAG	p.R1026Q	APC2_uc002lss.1_Missense_Mutation_p.R608Q|APC2_uc002lst.1_Missense_Mutation_p.R1026Q|APC2_uc002lsu.1_Missense_Mutation_p.R1025Q|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	1026					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGGGGCCCGGAAGCAGGCC	0.667000													6	5					0	0	8.12818e-05	0	0
ADAMTSL5	339366	broad.mit.edu	37	19	1507606	1507606	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:1507606G>A	uc002ltd.2	-	8	1082	c.638C>T	c.(637-639)CCC>CTC	p.P213L	ADAMTSL5_uc010dsl.2_5'UTR|ADAMTSL5_uc010xgq.1_Missense_Mutation_p.P223L	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	213						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGCCCTCGGGGATCAGGGT	0.642000													16	8					0	0	0.000375601	0	0
MUC16	94025	broad.mit.edu	37	19	9074625	9074625	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:9074625G>A	uc002mkp.2	-	3	13025	c.12821C>T	c.(12820-12822)CCA>CTA	p.P4274L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4276	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTAACCAATGGAGATGTGGC	0.483000													29	20					0	0	0.00178596	0	0
SMARCA4	6597	broad.mit.edu	37	19	11105632	11105632	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:11105632G>A	uc002mqf.3	+	9	1832	c.1548G>A	c.(1546-1548)AAG>AAA	p.K516K	SMARCA4_uc010dxp.2_Silent_p.K516K|SMARCA4_uc010dxo.2_Silent_p.K516K|SMARCA4_uc002mqg.1_Silent_p.K516K|SMARCA4_uc010dxq.2_Silent_p.K516K|SMARCA4_uc010dxr.2_Silent_p.K516K|SMARCA4_uc002mqj.3_Silent_p.K516K|SMARCA4_uc010dxs.2_Silent_p.K516K|SMARCA4_uc002mqe.2_Silent_p.K516K	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	516	HSA.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GGGAGCAGAAGAAAGAGAACG	0.547000			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				7	11					0	0	0.000442599	0	0
MRI1	84245	broad.mit.edu	37	19	13875469	13875469	+	Nonsense_Mutation	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:13875469A>T	uc002mxe.2	+	1	133	c.67A>T	c.(67-69)AAG>TAG	p.K23*	MRI1_uc002mxf.2_Nonsense_Mutation_p.K23*	NM_001031727	NP_001026897	Q9BV20	MTNA_HUMAN	translation initiation factor eIF-2B subunit	23					L-methionine salvage from methylthioadenosine	cell projection|cytoplasm|nucleus	identical protein binding|S-methyl-5-thioribose-1-phosphate isomerase activity			ovary(1)	1						GCTGCTGCCCAAGCAGAGCCG	0.567000													15	25					0	0	0.000308642	0	0
ILVBL	10994	broad.mit.edu	37	19	15234284	15234284	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:15234284G>A	uc002nam.2	-	3	360	c.239C>T	c.(238-240)CCG>CTG	p.P80L	ILVBL_uc010dzw.2_5'UTR|ILVBL_uc010dzx.1_Missense_Mutation_p.P80L	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	80						integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						CACCAGCAGCGGGGAAATGTG	0.637000													17	38					0	0	0.00074312	0	0
PLVAP	83483	broad.mit.edu	37	19	17476671	17476671	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:17476671C>T	uc002ngk.1	-	3	653	c.603G>A	c.(601-603)GTG>GTA	p.V201V		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	201	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CCCGGGTTTTCACGCATTCAA	0.557000													11	37					0	0	0.000978159	0	0
PDE4C	5143	broad.mit.edu	37	19	18324186	18324186	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:18324186G>T	uc010xqc.1	-	13	2080	c.1600C>A	c.(1600-1602)CGA>AGA	p.R534R	PDE4C_uc002nik.3_Silent_p.R534R|PDE4C_uc002nil.3_Silent_p.R534R|PDE4C_uc002nif.3_Silent_p.R303R|PDE4C_uc002nig.3_Silent_p.R249R|PDE4C_uc002nih.3_Silent_p.R304R|PDE4C_uc010ebk.2_Silent_p.R428R|PDE4C_uc002nii.3_Silent_p.R502R|PDE4C_uc010ebl.2_Silent_p.R248R	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	534					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	ACCTGGATTCGGTCGGAATAG	0.383000													4	35					0.00024832	0.00177096	0.00024832	1	0
ZNF99	7652	broad.mit.edu	37	19	22941498	22941498	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:22941498C>T	uc010xrh.1	-	5	940	c.940G>A	c.(940-942)GCT>ACT	p.A314T		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CACTTAAAAGCTTTACCACAT	0.378000													8	34					0	0	0.000157383	0	0
WDR88	126248	broad.mit.edu	37	19	33635810	33635810	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:33635810G>A	uc002nui.2	+	3	526	c.448G>A	c.(448-450)GAG>AAG	p.E150K		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	150	WD 2.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TCCTGTTGTAGAGTGCAGCAT	0.547000													3	8					0	0	6.4e-05	0	0
ATP4A	495	broad.mit.edu	37	19	36054375	36054375	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:36054375C>T	uc002oal.1	-	2	96	c.67G>A	c.(67-69)GCT>ACT	p.A23T		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	23	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	ATCTTGGCAGCCATGTCCCCG	0.572000													30	111					0	0	0.000692331	0	0
RYR1	6261	broad.mit.edu	37	19	39062686	39062686	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:39062686G>A	uc002oit.2	+	95	13904	c.13774G>A	c.(13774-13776)GAC>AAC	p.D4592N	RYR1_uc002oiu.2_Missense_Mutation_p.D4587N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4592					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGGGAGGACGACATGGAAGG	0.602000													17	30					0	0	0.00074312	0	0
PAPL	390928	broad.mit.edu	37	19	39591436	39591436	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:39591436C>T	uc002oki.2	+	7	1024	c.750C>T	c.(748-750)CTC>CTT	p.L250L	PAPL_uc010egl.2_Missense_Mutation_p.S209F	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	250						extracellular region	acid phosphatase activity|metal ion binding				0						ATTTCTTTCTCCATTATGGCC	0.617000													6	22					0	0	8.12818e-05	0	0
BCL3	602	broad.mit.edu	37	19	45262001	45262001	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:45262001G>T	uc010xxe.1	+	8	1150	c.1080G>T	c.(1078-1080)GGG>GGT	p.G360G		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	360	ANK 7.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				TCCTGAGGGGGAAGGCCACCC	0.642000			T	IGH@	CLL 								24	61					3.00307e-07	2.18117e-06	0.001512	1	0
BCL2L12	83596	broad.mit.edu	37	19	50169104	50169104	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:50169104C>T	uc002ppa.2	+	1	706	c.24C>T	c.(22-24)TTC>TTT	p.F8F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'UTR|IRF3_uc002pox.1_5'UTR|IRF3_uc002poy.1_5'UTR|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'UTR|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F8F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	8					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CTGGGCTGTTCCCGCCCCTAT	0.542000													40	27					0	0	0.000589545	0	0
KLK15	55554	broad.mit.edu	37	19	51330151	51330151	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:51330151C>T	uc002ptl.2	-	3	495	c.464G>A	c.(463-465)GGG>GAG	p.G155E	KLK15_uc002ptm.2_Intron|KLK15_uc002ptn.2_Missense_Mutation_p.G155E|KLK15_uc002pto.2_Missense_Mutation_p.G154E|KLK15_uc010ych.1_Intron|KLK15_uc010yci.1_Missense_Mutation_p.G154E|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	155	Peptidase S1.			SHNEPGTAGSPRSQ -> PLSSP (in Ref. 2).	proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		CCGGGGGCTCCCAGCGGTCCC	0.692000													15	5					0	0	0.000308642	0	0
KLK3	354	broad.mit.edu	37	19	51361337	51361337	+	Missense_Mutation	SNP	G	A	A	rs138565183	byFrequency	TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:51361337G>A	uc002pts.1	+	3	300	c.259G>A	c.(259-261)GGC>AGC	p.G87S	KLK3_uc010ycj.1_Missense_Mutation_p.G87S|KLK3_uc002ptr.1_Intron|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	87	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		TGAAGACACAGGCCAGGTATT	0.547000													23	6					0	0	0.000720815	0	0
ZNF331	55422	broad.mit.edu	37	19	54080355	54080355	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:54080355C>T	uc002qbx.1	+	7	1975	c.541C>T	c.(541-543)CAT>TAT	p.H181Y	ZNF331_uc002qby.1_Missense_Mutation_p.H181Y|ZNF331_uc002qbz.1_Missense_Mutation_p.H181Y|ZNF331_uc002qca.1_Missense_Mutation_p.H181Y|ZNF331_uc010eqr.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcb.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcc.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcd.1_Missense_Mutation_p.H181Y	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	181	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCAAAAAATTCATACTGGGGA	0.418000			T	?	follicular thyroid adenoma								56	20					0	0	0.000781405	0	0
MBOAT2	129642	broad.mit.edu	37	2	9008601	9008601	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:9008601G>A	uc002qzg.1	-	9	1095	c.962C>T	c.(961-963)TCC>TTC	p.S321F	MBOAT2_uc010yix.1_Missense_Mutation_p.S321F	NM_138799	NP_620154	Q6ZWT7	MBOA2_HUMAN	O-acyltransferase (membrane bound) domain	321					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TCTCAAATTGGAAATTAAGTC	0.348000													46	101					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21229057	21229057	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:21229057G>A	uc002red.2	-	26	10811	c.10683C>T	c.(10681-10683)TCC>TCT	p.S3561S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3561					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCTCCCAGAGGGAATATATGC	0.463000													216	310					0	0	0.000781405	0	0
GALNT14	79623	broad.mit.edu	37	2	31215711	31215711	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:31215711G>A	uc002rnr.2	-	2	911	c.292C>T	c.(292-294)CAT>TAT	p.H98Y	GALNT14_uc002rnq.2_Missense_Mutation_p.H78Y|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Missense_Mutation_p.H63Y|GALNT14_uc010ezo.1_Missense_Mutation_p.H98Y|GALNT14_uc010ezp.1_Missense_Mutation_p.H69Y	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	98	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TACCTCAGATGGCGAGTGTCC	0.562000													39	46					0	0	0.000781405	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656570	40656570	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:40656570G>A	uc002rrx.2	-	1	875	c.851C>T	c.(850-852)TCT>TTT	p.S284F	SLC8A1_uc002rry.2_Missense_Mutation_p.S284F|SLC8A1_uc002rrz.2_Missense_Mutation_p.S284F|SLC8A1_uc002rsa.2_Missense_Mutation_p.S284F|SLC8A1_uc002rsd.3_Missense_Mutation_p.S284F|SLC8A1_uc002rsb.1_Missense_Mutation_p.S284F|SLC8A1_uc010fan.1_Missense_Mutation_p.S284F|SLC8A1_uc002rsc.1_Missense_Mutation_p.S284F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	284	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AGTCTTAGAAGATGGCCTGTC	0.443000													69	142					0	0	0.000781405	0	0
C2orf63	130162	broad.mit.edu	37	2	55445100	55445100	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:55445100A>G	uc002ryi.2	-	4	558	c.212T>C	c.(211-213)CTT>CCT	p.L71P	C2orf63_uc002ryh.2_Intron|C2orf63_uc002ryj.2_5'UTR	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	71							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			GATTGAAGTAAGAATGGATTT	0.313000													19	48					0	0	0.00188189	0	0
XPO1	7514	broad.mit.edu	37	2	61724052	61724052	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:61724052C>A	uc002sbj.2	-	10	1578	c.850G>T	c.(850-852)GTA>TTA	p.V284L	XPO1_uc010fcl.2_Missense_Mutation_p.V280L|XPO1_uc010ypn.1_Missense_Mutation_p.V280L|XPO1_uc002sbk.2_5'UTR|XPO1_uc002sbh.2_5'Flank	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	284	Necessary for HTLV-1 Rex-mediated mRNA export.			V->E: Does not abolish Rex-mediated mRNA export.	intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			AATAGTGTTACAAATTGTTCT	0.328000													8	29					1.12685e-05	8.09924e-05	0.000274275	1	0
DYSF	8291	broad.mit.edu	37	2	71839847	71839847	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:71839847C>T	uc002sie.2	+	39	4620	c.4244C>T	c.(4243-4245)CCT>CTT	p.P1415L	DYSF_uc010feg.2_Missense_Mutation_p.P1446L|DYSF_uc010feh.2_Missense_Mutation_p.P1401L|DYSF_uc002sig.3_Missense_Mutation_p.P1401L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1415L|DYSF_uc010fef.2_Missense_Mutation_p.P1432L|DYSF_uc010fei.2_Missense_Mutation_p.P1432L|DYSF_uc010fek.2_Missense_Mutation_p.P1433L|DYSF_uc010fej.2_Missense_Mutation_p.P1402L|DYSF_uc010fel.2_Missense_Mutation_p.P1402L|DYSF_uc010feo.2_Missense_Mutation_p.P1447L|DYSF_uc010fem.2_Missense_Mutation_p.P1416L|DYSF_uc010fen.2_Missense_Mutation_p.P1433L|DYSF_uc002sif.2_Missense_Mutation_p.P1416L|DYSF_uc010yqy.1_Missense_Mutation_p.P296L|DYSF_uc010yqz.1_Missense_Mutation_p.P155L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1415	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGCCGCCGGCCTGTGGTGGGC	0.647000													12	28					0	0	0.000219431	0	0
MOGS	7841	broad.mit.edu	37	2	74689941	74689941	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:74689941G>A	uc010ffj.2	-	4	1138	c.975C>T	c.(973-975)ACC>ACT	p.T325T	MOGS_uc010ffh.2_Silent_p.T50T|MOGS_uc010yrt.1_Silent_p.T206T|MOGS_uc010ffi.2_Silent_p.T219T	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	325	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						GAATTTTCAGGGTCACCTGCT	0.567000													51	103					0	0	0.000781405	0	0
DOK1	1796	broad.mit.edu	37	2	74783970	74783970	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:74783970G>C	uc002sms.2	+	5	1197	c.1175G>C	c.(1174-1176)CGG>CCG	p.R392P	LOXL3_uc002smp.1_5'Flank|LOXL3_uc002smq.1_5'Flank|LOXL3_uc010ffn.1_5'Flank|DOK1_uc002smr.2_Missense_Mutation_p.R253P|DOK1_uc010ffo.2_Missense_Mutation_p.R253P|DOK1_uc002smt.2_Missense_Mutation_p.R178P|DOK1_uc002smu.2_Missense_Mutation_p.R178P|DOK1_uc010yrz.1_Missense_Mutation_p.R381P|DOK1_uc002smv.2_Missense_Mutation_p.R253P|DOK1_uc002smw.1_Missense_Mutation_p.R178P	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	392	Pro-rich.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						TGCCAAGCTCGGGTGAAGGAG	0.622000													3	72					0	0	6.4e-05	0	0
HK2	3099	broad.mit.edu	37	2	75101035	75101035	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:75101035A>T	uc002snd.2	+	6	2582	c.656A>T	c.(655-657)TAT>TTT	p.Y219F		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	219	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						ACCTGTGGTTATGATGACCAC	0.532000													6	31					0	0	8.12818e-05	0	0
RGPD4	285190	broad.mit.edu	37	2	108488632	108488632	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:108488632A>G	uc010ywk.1	+	20	4254	c.4172A>G	c.(4171-4173)AAG>AGG	p.K1391R	RGPD4_uc002tdu.2_Missense_Mutation_p.K578R|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1391	RanBD1 2.				intracellular transport		binding			skin(2)	2						TATGATAATAAGCAAGTTCGT	0.353000													119	211					0	0	0.000781405	0	0
GPR148	344561	broad.mit.edu	37	2	131487495	131487495	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:131487495C>T	uc002trv.1	+	1	773	c.771C>T	c.(769-771)TCC>TCT	p.S257S		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	257	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					AGGGCTATTCCCGGGCCAGGG	0.572000													27	50					0	0	0.00127121	0	0
LRP1B	53353	broad.mit.edu	37	2	141108424	141108425	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:141108424_141108425CC>TT	uc002tvj.1	-	77	12805_12806	c.11833_11834GG>AA	c.(11833-11835)GGA>AAA	p.G3945K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3945	Extracellular (Potential).|LDL-receptor class B 33.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTAGAAAATTCCGCCTGGATTA	0.327000										TSP Lung(27;0.18)			18	48					0	0	6.4e-05	0	0
LRP1B	53353	broad.mit.edu	37	2	141751606	141751606	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:141751606C>T	uc002tvj.1	-	16	3574	c.2602G>A	c.(2602-2604)GAT>AAT	p.D868N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	868	Extracellular (Potential).|LDL-receptor class A 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGCAGTCATCGTCGCCATCA	0.438000										TSP Lung(27;0.18)			33	58					0	0	0.000491102	0	0
CCDC148	130940	broad.mit.edu	37	2	159028745	159028745	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:159028745G>A	uc002tzq.2	-	14	1919	c.1656C>T	c.(1654-1656)TTC>TTT	p.F552F	CCDC148_uc002tzr.2_Silent_p.F400F|CCDC148_uc010foh.2_Silent_p.F265F	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	552										ovary(2)	2						GTGCTAACTCGAAGCGAAGTC	0.313000													30	46					0	0	0.00178596	0	0
XIRP2	129446	broad.mit.edu	37	2	168101760	168101760	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:168101760G>A	uc002udx.2	+	8	3876	c.3858G>A	c.(3856-3858)GAG>GAA	p.E1286E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.E1111E|XIRP2_uc010fpq.2_Silent_p.E1064E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1111					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTTTAGATGAGATTAAAGAAG	0.373000													34	53					0	0	0.000491102	0	0
TTN	7273	broad.mit.edu	37	2	179427744	179427744	+	Silent	SNP	G	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:179427744G>T	uc010zfg.1	-	275	75635	c.75411C>A	c.(75409-75411)CCC>CCA	p.P25137P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.P18832P|TTN_uc010zfi.1_Silent_p.P18765P|TTN_uc010zfj.1_Silent_p.P18640P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26064							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTAACTTCGGGTTCTGGTC	0.443000													6	131					0.00116845	0.008269	0.00116845	1	0
TTN	7273	broad.mit.edu	37	2	179495873	179495873	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:179495873C>A	uc010zfg.1	-	186	36422	c.36198G>T	c.(36196-36198)AAG>AAT	p.K12066N	TTN_uc010zfh.1_Missense_Mutation_p.K5761N|TTN_uc010zfi.1_Missense_Mutation_p.K5694N|TTN_uc010zfj.1_Missense_Mutation_p.K5569N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12993							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCATCTGCCTTAATAACAG	0.398000													19	63					2.35188e-11	1.71725e-10	0.00074312	1	0
TTN	7273	broad.mit.edu	37	2	179581844	179581844	+	Silent	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:179581844A>G	uc010zfg.1	-	85	22109	c.21885T>C	c.(21883-21885)TGT>TGC	p.C7295C	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.C3956C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8222							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGAGCAGAACAAGAGTCTT	0.453000													10	31					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179598575	179598575	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:179598575C>T	uc010zfg.1	-	50	12033	c.11809G>A	c.(11809-11811)GGA>AGA	p.G3937R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G598R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4864							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTGTCCTCCTAGTGCAATC	0.418000													21	56					0	0	0.00188189	0	0
TTN	7273	broad.mit.edu	37	2	179606177	179606177	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:179606177G>A	uc010zfh.1	-	46	11494	c.11270C>T	c.(11269-11271)TCT>TTT	p.S3757F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S3690F|TTN_uc010zfj.1_Missense_Mutation_p.S3565F|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTTCCAGAGATTTTGCCAC	0.428000													88	75					0	0	0.000781405	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802483	185802483	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:185802483G>A	uc002uph.2	+	4	2954	c.2360G>A	c.(2359-2361)CGA>CAA	p.R787Q		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	787						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AGTTTAAATCGACAGAATCAT	0.373000													38	41					0	0	0.000814825	0	0
COL3A1	1281	broad.mit.edu	37	2	189855034	189855034	+	Missense_Mutation	SNP	G	A	A	rs121912927		TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:189855034G>A	uc002uqj.1	+	10	863	c.746G>A	c.(745-747)GGT>GAT	p.G249D	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	249	Triple-helical region.		G -> D (in EDS4).|G -> V (in EDS4).		axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TATTTTTAGGGTATCAAAGGT	0.328000													14	19					0	0	0.000566183	0	0
LANCL1	10314	broad.mit.edu	37	2	211302499	211302499	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:211302499G>A	uc010zjh.1	-	7	863	c.788C>T	c.(787-789)CCA>CTA	p.P263L	LANCL1_uc002ved.2_Missense_Mutation_p.P263L|LANCL1_uc010fuq.2_Missense_Mutation_p.P263L	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	263						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		ACCTATACATGGAGGGTAATT	0.488000													29	29					0	0	0.00127121	0	0
FN1	2335	broad.mit.edu	37	2	216245549	216245549	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:216245549C>T	uc002vfa.2	-	33	5685	c.5419G>A	c.(5419-5421)GGA>AGA	p.G1807R	FN1_uc002vfb.2_Intron|FN1_uc002vfc.2_Intron|FN1_uc002vfd.2_Missense_Mutation_p.G1807R|FN1_uc002vfe.2_Missense_Mutation_p.G1716R|FN1_uc002vff.2_Missense_Mutation_p.G1716R|FN1_uc002vfg.2_Intron|FN1_uc002vfh.2_Intron|FN1_uc002vfi.2_Missense_Mutation_p.G1807R|FN1_uc002vfj.2_Intron|FN1_uc002vez.2_5'UTR|FN1_uc010zjp.1_Intron|FN1_uc002vfk.1_5'Flank|FN1_uc010fva.1_5'Flank|FN1_uc010fvb.1_5'Flank|FN1_uc010fvc.1_Missense_Mutation_p.G169R|FN1_uc010fvd.1_Intron	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1806	Heparin-binding 2.|Fibronectin type-III 13.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GACTGGGTTCCAATCAGGGGC	0.522000													23	92					0	0	0.000720815	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447505	226447505	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:226447505G>A	uc002voe.2	+	4	1547	c.1372G>A	c.(1372-1374)GAC>AAC	p.D458N	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.D228N	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	458	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TCCCCCTTACGACGCTGTGCA	0.627000													15	27					0	0	0.000566183	0	0
DNER	92737	broad.mit.edu	37	2	230456304	230456304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:230456304G>A	uc002vpv.2	-	2	724	c.577C>T	c.(577-579)CAA>TAA	p.Q193*		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	193	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		ACCTCCACTTGATCCCATTTC	0.433000													5	34					0	0	0.00116845	0	0
ESPNL	339768	broad.mit.edu	37	2	239040160	239040160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr2:239040160G>A	uc002vxq.3	+	9	2915	c.2805G>A	c.(2803-2805)TGG>TGA	p.W935*	ESPNL_uc010fyw.2_Nonsense_Mutation_p.W631*	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	935										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GTCCCGCCTGGGATACGGAGC	0.726000													11	10					0	0	0.000673444	0	0
C20orf26	26074	broad.mit.edu	37	20	20037347	20037347	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:20037347G>A	uc002wru.2	+	2	126	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	C20orf26_uc010gcw.1_Intron|C20orf26_uc010zse.1_Missense_Mutation_p.R17Q|C20orf26_uc010zsf.1_Missense_Mutation_p.R17Q|CRNKL1_uc002wrs.2_5'Flank|CRNKL1_uc002wrt.1_5'Flank	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	17										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GTTCATTGCCGAAGAACAGAA	0.348000													24	74					0	0	0.000586117	0	0
NINL	22981	broad.mit.edu	37	20	25459788	25459788	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:25459788T>C	uc002wux.1	-	16	2046	c.1972A>G	c.(1972-1974)AGG>GGG	p.R658G	NINL_uc010gdn.1_Missense_Mutation_p.R658G|NINL_uc010gdo.1_Missense_Mutation_p.R441G	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	658	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						ATGTCCTTCCTCTCCTTCTCA	0.542000													20	65					0	0	0.00152264	0	0
DEFB115	245929	broad.mit.edu	37	20	29847382	29847382	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:29847382G>A	uc002wvp.1	+	2	214	c.214G>A	c.(214-216)GAT>AAT	p.D72N		NM_001037730	NP_001032819	Q30KQ5	DB115_HUMAN	beta-defensin 115 precursor	72					defense response to bacterium	extracellular region				ovary(1)	1			Colorectal(19;0.00445)|COAD - Colon adenocarcinoma(19;0.0347)			TAAAGAAAAGGATAAACTATC	0.348000													9	25					0	0	0.000274275	0	0
MYLK2	85366	broad.mit.edu	37	20	30418840	30418840	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:30418840G>A	uc002wwq.2	+	10	1422	c.1320G>A	c.(1318-1320)AAG>AAA	p.K440K	MYLK2_uc002wws.2_Silent_p.K57K|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	440	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AGAAGCTGAAGGTGAACTTTG	0.557000													12	44					0	0	0.00136819	0	0
EPB41L1	2036	broad.mit.edu	37	20	34785922	34785922	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:34785922G>A	uc002xfb.2	+	14	1798	c.1627G>A	c.(1627-1629)GCC>ACC	p.A543T	EPB41L1_uc002xeu.2_Missense_Mutation_p.A469T|EPB41L1_uc010zvo.1_Missense_Mutation_p.A543T|EPB41L1_uc002xev.2_Missense_Mutation_p.A543T|EPB41L1_uc002xew.2_Missense_Mutation_p.A434T|EPB41L1_uc002xex.2_Missense_Mutation_p.A500T|EPB41L1_uc002xey.2_Missense_Mutation_p.A458T|EPB41L1_uc002xez.2_Missense_Mutation_p.A469T|EPB41L1_uc010gfq.2_5'UTR	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	543					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CTCCTCCCCCGCCTCCCCCTC	0.612000													16	13					0	0	0.000566183	0	0
JPH2	57158	broad.mit.edu	37	20	42744480	42744480	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:42744480G>A	uc002xli.1	-	4	2708	c.1835C>T	c.(1834-1836)CCC>CTC	p.P612L		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	612	Pro-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TGCAGGCTCGGGGCCTCGGAG	0.741000													9	4					0	0	0.000274275	0	0
MYT1	4661	broad.mit.edu	37	20	62871117	62871117	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr20:62871117C>T	uc002yii.2	+	22	3462	c.3098C>T	c.(3097-3099)TCC>TTC	p.S1033F	MYT1_uc002yij.2_Missense_Mutation_p.S692F|MYT1_uc002yik.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	1033					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GCACAGATCTCCTCCATGGAG	0.587000													30	20					0	0	0.000339439	0	0
LIPI	149998	broad.mit.edu	37	21	15537607	15537607	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr21:15537607C>T	uc002yjm.2	-	6	911	c.901G>A	c.(901-903)GAT>AAT	p.D301N	LIPI_uc010gkw.1_Missense_Mutation_p.D204N	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	280					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GTCTTGTAATCTTTGTATGAA	0.343000													27	34					0	0	0.000878237	0	0
SAMSN1	64092	broad.mit.edu	37	21	15872983	15872983	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr21:15872983C>T	uc002yju.1	-	6	717	c.635G>A	c.(634-636)GGA>GAA	p.G212E	SAMSN1_uc010gky.1_Missense_Mutation_p.G44E|SAMSN1_uc002yjv.1_Missense_Mutation_p.G280E	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	212	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TTTGAAGTTTCCCACTTTATT	0.388000													36	88					0	0	0.00111076	0	0
HLCS	3141	broad.mit.edu	37	21	38126705	38126705	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr21:38126705G>A	uc010gnb.2	-	11	3224	c.2023C>T	c.(2023-2025)CAT>TAT	p.H675Y	HLCS_uc002yvs.2_Missense_Mutation_p.H675Y	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	675					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	CTGCCCAGATGGACTTGCTGA	0.547000													8	20					0	0	0.000274275	0	0
DSCAM	1826	broad.mit.edu	37	21	41711158	41711158	+	Silent	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr21:41711158C>A	uc002yyq.1	-	7	1847	c.1395G>T	c.(1393-1395)GTG>GTT	p.V465V	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	465	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGTAGCTGACCACGTTCCCCT	0.612000													10	28					1.58986e-06	1.1487e-05	0.000673444	1	0
psiTPTE22	387590	broad.mit.edu	37	22	17178570	17178570	+	RNA	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:17178570A>G	uc002zls.1	+	3		c.652A>G								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						GCTGGCCATCAGGAGCAGGGC	0.602000													3	33					0	0	6.4e-05	0	0
PPIL2	23759	broad.mit.edu	37	22	22040799	22040799	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:22040799G>A	uc010gtj.1	+	11	858	c.742G>A	c.(742-744)GCT>ACT	p.A248T	PPIL2_uc002zvh.3_Missense_Mutation_p.A248T|PPIL2_uc002zvi.3_Missense_Mutation_p.A248T|PPIL2_uc002zvg.3_Missense_Mutation_p.A248T|PPIL2_uc011aij.1_Missense_Mutation_p.A227T|PPIL2_uc002zvk.3_5'UTR	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	248					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					GAAGGTCAGCGCTTCCTTCAC	0.612000													27	13					0	0	0.00106085	0	0
LOC96610	96610	broad.mit.edu	37	22	22664115	22664115	+	RNA	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:22664115A>T	uc011aim.1	+	30		c.1972A>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTTTAATTCAGCCTTGGAAG	0.413000													6	39					0	0	0.000157383	0	0
CHEK2	11200	broad.mit.edu	37	22	29091840	29091840	+	Missense_Mutation	SNP	T	C	C	rs142470496	byFrequency	TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:29091840T>C	uc003adu.1	-	11	1189	c.1117A>G	c.(1117-1119)AAG>GAG	p.K373E	CHEK2_uc003ads.1_Missense_Mutation_p.K152E|CHEK2_uc010gvh.1_Missense_Mutation_p.K282E|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.K416E|CHEK2_uc003adv.1_Missense_Mutation_p.K344E|CHEK2_uc003adw.1_Missense_Mutation_p.K373E|CHEK2_uc003adx.1_Missense_Mutation_p.K152E|CHEK2_uc003ady.1_Missense_Mutation_p.K373E|CHEK2_uc003adz.1_Missense_Mutation_p.K177E	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	373	Protein kinase.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.K373E(2)		central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						CCCAAAATCTTGGAGTGCCCA	0.418000			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				3	36					0	0	0.000602214	0	0
ELFN2	114794	broad.mit.edu	37	22	37771217	37771217	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:37771217C>T	uc003asq.3	-	3	1144	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	120	LRR 3.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					AGCATGCCCTCCGTCAGGTTG	0.622000													28	20					0	0	0.00127121	0	0
FAM116B	414918	broad.mit.edu	37	22	50756380	50756380	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr22:50756380G>A	uc011aru.1	-	5	401	c.329C>T	c.(328-330)GCC>GTC	p.A110V	FAM116B_uc011arv.1_Missense_Mutation_p.A110V	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	110											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCTGTCGTCGGCATGCCAGGG	0.657000													15	13					0	0	0.00121646	0	0
CNTN4	152330	broad.mit.edu	37	3	2908472	2908472	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:2908472C>T	uc003bpc.2	+	7	712	c.491C>T	c.(490-492)TCC>TTC	p.S164F	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.S164F	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	164	Ig-like C2-type 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GAATACCCTTCCTATCAGGAT	0.383000													42	36					0	0	0.000781405	0	0
SETMAR	6419	broad.mit.edu	37	3	4355398	4355399	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:4355398_4355399GG>AA	uc011asp.1	+	2	1040_1041	c.973_974GG>AA	c.(973-975)GGC>AAC	p.G325N	SUMF1_uc003bps.1_Intron|SETMAR_uc003bpw.3_Missense_Mutation_p.G312N|SETMAR_uc003bpy.3_Missense_Mutation_p.G47N|SETMAR_uc011asq.1_Missense_Mutation_p.G173N|SETMAR_uc011asr.1_Missense_Mutation_p.G69N|SETMAR_uc010hbx.2_Missense_Mutation_p.G120N	NM_006515	NP_006506	Q53H47	SETMR_HUMAN	SET domain and mariner transposase fusion	312	Histone-lysine N-methyltransferase.				DNA integration|DNA repair|transposition, DNA-mediated	chromosome|nucleus	DNA binding|endonuclease activity|histone-lysine N-methyltransferase activity|transposase activity|zinc ion binding			ovary(1)	1		Melanoma(143;0.0657)		Epithelial(13;0.0025)|OV - Ovarian serous cystadenocarcinoma(96;0.011)|all cancers(10;0.0114)		CAGCATGTGTGGCTCAGCCCCT	0.505000								Chromatin_Structure|Direct_reversal_of_damage					27	15					0	0	6.4e-05	0	0
RFTN1	23180	broad.mit.edu	37	3	16450885	16450885	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:16450885C>T	uc003cay.2	-	4	720	c.438G>A	c.(436-438)AAG>AAA	p.K146K	RFTN1_uc010hes.2_Silent_p.K110K	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	146						plasma membrane				ovary(3)|central_nervous_system(1)	4						CGCTCACCTTCTTAATGAACT	0.478000													18	12					0	0	0.00152264	0	0
BSN	8927	broad.mit.edu	37	3	49692305	49692305	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:49692305C>T	uc003cxe.3	+	5	5430	c.5316C>T	c.(5314-5316)GCC>GCT	p.A1772A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1772					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGTGCCTGGCCCAGGTCAAAC	0.592000													26	14					0	0	0.00047179	0	0
C3orf15	89876	broad.mit.edu	37	3	119458134	119458134	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:119458134C>T	uc003ede.3	+	12	1571	c.1494C>T	c.(1492-1494)TAC>TAT	p.Y498Y	C3orf15_uc010hqy.1_Silent_p.Y498Y|C3orf15_uc010hqz.2_Silent_p.Y436Y|C3orf15_uc011bjd.1_Silent_p.Y372Y|C3orf15_uc011bje.1_Silent_p.Y478Y|C3orf15_uc010hra.1_Silent_p.Y259Y	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	334						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CTGTGATCTACCTTCAAAAGT	0.418000													86	42					0	0	0.000781405	0	0
SI	6476	broad.mit.edu	37	3	164785148	164785148	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:164785148C>T	uc003fei.2	-	6	677	c.615G>A	c.(613-615)AGG>AGA	p.R205R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	205	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CGTTGCTTTTCCTAATAACTT	0.308000										HNSCC(35;0.089)			27	18					0	0	0.000878237	0	0
WDR49	151790	broad.mit.edu	37	3	167245747	167245747	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:167245747G>A	uc003fev.1	-	11	1715	c.1409C>T	c.(1408-1410)TCA>TTA	p.S470L	WDR49_uc003feu.1_Missense_Mutation_p.S295L|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	470										large_intestine(1)|ovary(1)|skin(1)	3						AGGTTGGAATGATCTTATCAG	0.403000													29	17					0	0	0.000339439	0	0
LEPREL1	55214	broad.mit.edu	37	3	189692379	189692379	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:189692379C>T	uc011bsk.1	-	9	1808	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	LEPREL1_uc003fsg.2_Missense_Mutation_p.E293K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	474					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CGGCACTGTTCTTCCGACAGG	0.577000													20	16					0	0	0.00188189	0	0
ATP13A5	344905	broad.mit.edu	37	3	193023397	193023397	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:193023397G>A	uc011bsq.1	-	23	2629	c.2629C>T	c.(2629-2631)CCT>TCT	p.P877S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	877					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GAGGTAAAAGGGGATGCCACA	0.398000													57	26					0	0	0.000781405	0	0
ZNF721	170960	broad.mit.edu	37	4	437235	437235	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:437235T>C	uc003gag.2	-	3	1712	c.1021A>G	c.(1021-1023)ACC>GCC	p.T341A	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.T373A|ZNF721_uc010ibe.2_Missense_Mutation_p.T329A	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	341						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTCTAAAGGTTTTGCCACAT	0.433000													3	82					0	0	6.4e-05	0	0
HERC3	8916	broad.mit.edu	37	4	89627995	89627995	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:89627995C>T	uc003hrw.1	+	26	3203	c.3037C>T	c.(3037-3039)CCG>TCG	p.P1013S	HERC3_uc011cdn.1_Missense_Mutation_p.P895S|HERC3_uc011cdo.1_Missense_Mutation_p.P457S|FAM13AOS_uc003hry.1_5'Flank	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	1013	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		GGAGTACTTGCCGGTGGCCCA	0.577000											OREG0016265	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	12					0	0	0.00178596	0	0
GRID2	2895	broad.mit.edu	37	4	94411794	94411794	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:94411794G>A	uc011cdt.1	+	12	2121	c.1863G>A	c.(1861-1863)GGG>GGA	p.G621G	GRID2_uc011cdu.1_Silent_p.G526G	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	621	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CTACAGGCGGGGAAGTCCCGT	0.423000													23	64					0	0	0.000586117	0	0
ANKRD50	57182	broad.mit.edu	37	4	125593328	125593328	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:125593328T>A	uc003ifg.3	-	3	1370	c.1104A>T	c.(1102-1104)GAA>GAT	p.E368D	ANKRD50_uc011cgo.1_Missense_Mutation_p.E189D|ANKRD50_uc010inw.2_Missense_Mutation_p.E368D	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	368										central_nervous_system(1)	1						CGTGATATAATTCCGTTATGG	0.393000													33	113					0	0	0.00111076	0	0
GYPB	2994	broad.mit.edu	37	4	144940433	144940434	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:144940433_144940434CC>TT	uc003ijm.1	-	1	63_64	c.7_8GG>AA	c.(7-9)GGA>AAA	p.G3K	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_RNA|GYPB_uc011chx.1_RNA|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	3						integral to plasma membrane					0	all_hematologic(180;0.158)					GATTATTTTTCCATACATCCTG	0.356000													5	34					0	0	6.4e-05	0	0
GRIA2	2891	broad.mit.edu	37	4	158256979	158256979	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:158256979G>A	uc003ipm.3	+	10	1882	c.1423G>A	c.(1423-1425)GAT>AAT	p.D475N	GRIA2_uc011cit.1_Missense_Mutation_p.D428N|GRIA2_uc003ipl.3_Missense_Mutation_p.D475N|GRIA2_uc003ipk.3_Missense_Mutation_p.D428N|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	475	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGGGGCCAGGGATGCAGACAC	0.423000													14	2					0	0	0.000308642	0	0
GRIA2	2891	broad.mit.edu	37	4	158281187	158281187	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:158281187C>T	uc003ipm.3	+	13	2642	c.2183C>T	c.(2182-2184)ACG>ATG	p.T728M	GRIA2_uc011cit.1_Missense_Mutation_p.T681M|GRIA2_uc003ipl.3_Missense_Mutation_p.T728M|GRIA2_uc003ipk.3_Missense_Mutation_p.T681M|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.T38M|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Missense_Mutation_p.T38M|GRIA2_uc011ciy.1_Missense_Mutation_p.T38M|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	728	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TTGGAGTCCACGATGAACGAG	0.522000													10	54					0	0	0.000442599	0	0
TRIM60	166655	broad.mit.edu	37	4	165962309	165962309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:165962309G>A	uc003iqy.1	+	3	1255	c.1085G>A	c.(1084-1086)TGG>TAG	p.W362*	TRIM60_uc010iqx.1_Nonsense_Mutation_p.W362*	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	362	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AAACCTAAATGGATATTGGGT	0.483000													59	49					0	0	0.000781405	0	0
ODZ3	55714	broad.mit.edu	37	4	183696080	183696080	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr4:183696080G>A	uc003ivd.1	+	23	5115	c.5078G>A	c.(5077-5079)AGA>AAA	p.R1693K		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1693	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GATCAGTTAAGAAACAGCTAC	0.438000													5	21					0	0	0.000602214	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5209251	5209251	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:5209251G>A	uc003jdl.2	+	10	1635	c.1497G>A	c.(1495-1497)AAG>AAA	p.K499K	ADAMTS16_uc003jdk.1_Silent_p.K499K|ADAMTS16_uc003jdj.1_Silent_p.K499K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	499	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AGCCTGTGAAGGAATACAAGT	0.473000													38	96					0	0	0.00148497	0	0
TRIO	7204	broad.mit.edu	37	5	14304643	14304643	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:14304643A>G	uc003jff.2	+	8	1448	c.1442A>G	c.(1441-1443)GAA>GGA	p.E481G	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.E432G|TRIO_uc003jfh.1_Missense_Mutation_p.E130G	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	481					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CAGGACCTAGAAGATGCCATT	0.413000													19	59					0	0	0.000958276	0	0
PRDM9	56979	broad.mit.edu	37	5	23527498	23527498	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:23527498G>A	uc003jgo.2	+	11	2483	c.2301G>A	c.(2299-2301)CAG>CAA	p.Q767Q		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	767	C2H2-type 10.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TCAGACACCAGAGGACACACA	0.582000										HNSCC(3;0.000094)			39	33					0	0	0.000509022	0	0
PRLR	5618	broad.mit.edu	37	5	35065986	35065986	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:35065986G>A	uc003jjm.2	-	10	1604	c.1074C>T	c.(1072-1074)TCC>TCT	p.S358S	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Silent_p.S257S	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	358	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CAGACAAAAGGGAAGGGCTGT	0.498000													21	22					0	0	0.00188189	0	0
RGNEF	64283	broad.mit.edu	37	5	73166004	73166004	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:73166004G>A	uc011csq.1	+	20	2547	c.2536G>A	c.(2536-2538)GAT>AAT	p.D846N	RGNEF_uc003kcx.2_Missense_Mutation_p.D846N|RGNEF_uc010izf.2_Missense_Mutation_p.D846N|RGNEF_uc011csr.1_Missense_Mutation_p.D533N	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	846					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GCAGGAGAAGGATGTCATCAA	0.348000													18	8					0	0	0.000566183	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948468	82948468	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:82948468C>T	uc003kim.2	-	2	347	c.276G>A	c.(274-276)GTG>GTA	p.V92V	HAPLN1_uc003kin.2_Silent_p.V92V	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	92	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CAAAAACATCCACTTCCTTGA	0.433000													43	48					0	0	0.000589545	0	0
PHF15	23338	broad.mit.edu	37	5	133914319	133914319	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:133914319C>T	uc003kzo.1	+	11	1864	c.1685C>T	c.(1684-1686)CCA>CTA	p.P562L	PHF15_uc011cxt.1_Missense_Mutation_p.P606L|PHF15_uc003kzk.2_Missense_Mutation_p.P622L|PHF15_uc003kzl.2_3'UTR|PHF15_uc003kzm.2_Missense_Mutation_p.P563L|PHF15_uc003kzn.2_3'UTR	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	562					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACCCTGCTCCAGGGCTGCTG	0.617000													14	28					0	0	0.000422831	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774328	140774328	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:140774328G>A	uc003lkd.1	+	1	2846	c.1948G>A	c.(1948-1950)GGC>AGC	p.G650S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.G650S	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	650	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGGACCATGGCCAGCCCCC	0.667000													19	9					0	0	0.000375601	0	0
EBF1	1879	broad.mit.edu	37	5	158250326	158250326	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:158250326C>T	uc010jip.2	-	8	939	c.637_splice	c.e8-1	p.V213_splice	EBF1_uc011ddw.1_Splice_Site_p.V80_splice|EBF1_uc011ddx.1_Splice_Site_p.V213_splice|EBF1_uc003lxl.3_Splice_Site_p.V190_splice	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor						multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACACCACGACCTGGAGACATA	0.413000			T	HMGA2	lipoma								12	1					0	0	0.000308642	0	0
MIR218-2	407001	broad.mit.edu	37	5	168195176	168195176	+	RNA	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:168195176G>A	hsa-mir-218-2|MI0000295	-			c.85G>A			SLIT3_uc003mab.2_Intron|SLIT3_uc010jjg.2_Intron|uc010jjh.2_RNA																	0						TGCTTTCCGCGGTGCTTGACA	0.617000													3	8					0	0	6.4e-05	0	0
DDX41	51428	broad.mit.edu	37	5	176939793	176939793	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr5:176939793G>A	uc003mho.2	-	13	1408	c.1387C>T	c.(1387-1389)CAT>TAT	p.H463Y	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhk.2_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Missense_Mutation_p.H243Y|DDX41_uc003mhn.2_Missense_Mutation_p.H332Y|DDX41_uc003mhp.2_Missense_Mutation_p.H332Y|DDX41_uc003mhq.1_Missense_Mutation_p.H243Y	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	463	Helicase C-terminal.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TTGCCCCCATGGATGGCTACG	0.587000													46	26					0	0	0.000781405	0	0
SIRT5	23408	broad.mit.edu	37	6	13592077	13592077	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:13592077C>T	uc003nay.2	+	5	722	c.426C>T	c.(424-426)ATC>ATT	p.I142I	SIRT5_uc003naw.2_Silent_p.I142I|SIRT5_uc003nax.2_Silent_p.I34I|SIRT5_uc011dit.1_Silent_p.I142I	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	142	NAD.|Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	CCCAGAACATCGATGAGCTGC	0.622000													21	22					0	0	0.000586117	0	0
GPLD1	2822	broad.mit.edu	37	6	24460549	24460550	+	Missense_Mutation	DNP	AT	GC	GC			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:24460549_24460550AT>GC	uc003ned.1	-	12	1076_1077	c.965_966AT>GC	c.(964-966)TAT>TGC	p.Y322C	GPLD1_uc010jpr.1_Missense_Mutation_p.Y159C|GPLD1_uc010jps.1_Missense_Mutation_p.Y322C	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	322						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CTCTTTCAGTATAGTTTATATT	0.361000													47	46					0	0	6.4e-05	0	0
KIAA0319	9856	broad.mit.edu	37	6	24582535	24582535	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:24582535G>A	uc011djo.1	-	6	1370	c.1133C>T	c.(1132-1134)CCC>CTC	p.P378L	KIAA0319_uc011djp.1_Missense_Mutation_p.P333L|KIAA0319_uc003neh.1_Missense_Mutation_p.P378L|KIAA0319_uc011djq.1_Missense_Mutation_p.P369L|KIAA0319_uc011djr.1_Missense_Mutation_p.P378L|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	378	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GTAGTCTGTGGGGTGGCTTAT	0.383000													66	96					0	0	0.000781405	0	0
BTN1A1	696	broad.mit.edu	37	6	26508792	26508792	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:26508792C>T	uc003nif.3	+	7	991	c.971C>T	c.(970-972)TCT>TTT	p.S324F		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	324	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GATTCAAAATCTGTTCGACTG	0.488000													31	122					0	0	0.000409698	0	0
TRIM15	89870	broad.mit.edu	37	6	30131816	30131816	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:30131816C>T	uc010jrx.2	+	1	834	c.355C>T	c.(355-357)CTG>TTG	p.L119L		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	119	B box-type.				mesodermal cell fate determination	intracellular	zinc ion binding				0						CGTGGGGTTCCTGGACGAGGC	0.587000													10	25					0	0	0.00136819	0	0
NRM	11270	broad.mit.edu	37	6	30658646	30658646	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:30658646C>T	uc003nrc.2	-	1	124	c.106G>A	c.(106-108)GGA>AGA	p.G36R	KIAA1949_uc003nrb.3_5'Flank|NRM_uc003nrd.2_RNA|NRM_uc003nre.2_5'UTR	NM_007243	NP_009174	Q8IXM6	NRM_HUMAN	nurim	36	Perinuclear space (Potential).					integral to membrane|nuclear inner membrane					0						GGGATCCCTCCAAGAAGTGGC	0.637000													13	57					0	0	0.00136819	0	0
BAT1	7919	broad.mit.edu	37	6	31504375	31504375	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:31504375G>A	uc003ntt.2	-	5	1149	c.518C>T	c.(517-519)CCA>CTA	p.P173L	BAT1_uc003ntr.2_5'Flank|BAT1_uc003nts.2_Missense_Mutation_p.P173L|BAT1_uc011dnn.1_Missense_Mutation_p.P95L|BAT1_uc003ntu.2_Missense_Mutation_p.P173L|BAT1_uc003ntv.2_Missense_Mutation_p.P173L|BAT1_uc003ntw.2_Missense_Mutation_p.P173L|BAT1_uc003ntx.2_Missense_Mutation_p.P173L|BAT1_uc011dno.1_Missense_Mutation_p.P126L|BAT1_uc011dnp.1_Missense_Mutation_p.P95L|SNORD117_uc003nty.1_5'Flank|BAT1_uc011dnq.1_RNA	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	173	Helicase ATP-binding.				intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						GATACGGCCTGGAGTCCCCAC	0.473000													22	51					0	0	0.00188189	0	0
BAT3	7917	broad.mit.edu	37	6	31612752	31612752	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:31612752G>A	uc003nvg.3	-	10	1672	c.1358C>T	c.(1357-1359)CCC>CTC	p.P453L	BAT3_uc003nvf.3_Missense_Mutation_p.P447L|BAT3_uc003nvh.3_Missense_Mutation_p.P447L|BAT3_uc003nvi.3_Missense_Mutation_p.P447L|BAT3_uc011dnw.1_Missense_Mutation_p.P447L|BAT3_uc011dnx.1_Missense_Mutation_p.P447L|BAT3_uc003nvj.1_Missense_Mutation_p.P447L	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	453	Pro-rich.|4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						CATGACCACGGGTTCCACACT	0.597000													76	220					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32065092	32065092	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:32065092G>A	uc003nzl.2	-	3	740	c.538C>T	c.(538-540)CCA>TCA	p.P180S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	180					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCTGAGGGTGGGGAAGAGGGA	0.632000													94	79					0	0	0.000781405	0	0
DNAH8	1769	broad.mit.edu	37	6	38862526	38862526	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:38862526G>A	uc003ooe.1	+	57	8582	c.7982G>A	c.(7981-7983)CGA>CAA	p.R2661Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCAATCTTCGAGATCTTTCC	0.393000													32	36					0	0	0.000491102	0	0
DNAH8	1769	broad.mit.edu	37	6	38867567	38867567	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:38867567C>T	uc003ooe.1	+	60	9028	c.8428C>T	c.(8428-8430)CGA>TGA	p.R2810*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACGAATAATTCGAACGTCGTG	0.368000													12	35					0	0	0.000308642	0	0
PGC	5225	broad.mit.edu	37	6	41704716	41704716	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:41704716G>A	uc003ora.1	-	9	1090	c.1041C>T	c.(1039-1041)GTC>GTT	p.V347V	TFEB_uc003oqs.1_5'Flank|TFEB_uc003oqt.1_5'Flank|TFEB_uc003oqu.1_5'Flank|TFEB_uc010jxq.1_5'Flank	NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	347					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGGTGGGCTCGACTCCCACGG	0.428000													12	39					0	0	0.000219431	0	0
PLA2G7	7941	broad.mit.edu	37	6	46684775	46684775	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:46684775G>A	uc010jzf.2	-	3	437	c.168C>T	c.(166-168)ATC>ATT	p.I56I	PLA2G7_uc010jzg.1_Silent_p.I56I|PLA2G7_uc011dwd.1_Silent_p.I11I|PLA2G7_uc011dwe.1_Intron	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	56					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			TTCCCCGGGGGATTTTAGTTT	0.378000													19	54					0	0	0.00121646	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55381350	55381350	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:55381350G>A	uc003pcn.2	-	5	598	c.439C>T	c.(439-441)CGC>TGC	p.R147C	HMGCLL1_uc003pco.2_Missense_Mutation_p.R117C|HMGCLL1_uc010jzx.2_Missense_Mutation_p.R18C|HMGCLL1_uc011dxc.1_Intron|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	147							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACAGGATAGCGAACTCCTGGA	0.343000													46	55					0	0	0.000781405	0	0
COL21A1	81578	broad.mit.edu	37	6	55990387	55990387	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:55990387G>A	uc003pcs.2	-	14	1860	c.1628C>T	c.(1627-1629)TCA>TTA	p.S543L	COL21A1_uc010jzz.2_5'Flank|COL21A1_uc011dxg.1_5'Flank|COL21A1_uc011dxh.1_5'Flank|COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.S543L|COL21A1_uc003pcu.1_Missense_Mutation_p.S540L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	543	Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AAATCCAGGTGATCCTTTGTC	0.284000													11	19					0	0	0.00185496	0	0
ZNF451	26036	broad.mit.edu	37	6	57013018	57013018	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:57013018C>T	uc003pdm.1	+	10	2359	c.2135C>T	c.(2134-2136)CCA>CTA	p.P712L	ZNF451_uc003pdl.2_Missense_Mutation_p.P712L|ZNF451_uc003pdn.1_Missense_Mutation_p.P712L|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.P712L	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	712					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			GATGATTTTCCAGTAATAGAG	0.363000													17	5					0	0	0.00074312	0	0
BAI3	577	broad.mit.edu	37	6	69348628	69348628	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:69348628G>A	uc003pev.3	+	3	509	c.61G>A	c.(61-63)GGA>AGA	p.G21R	BAI3_uc010kak.2_Missense_Mutation_p.G21R	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	21					negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGTTATGTTTGGATTTAATGC	0.363000													50	50					0	0	0.000781405	0	0
COL9A1	1297	broad.mit.edu	37	6	70983758	70983758	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:70983758C>T	uc003pfg.3	-	12	1216	c.1057G>A	c.(1057-1059)GGA>AGA	p.G353R	COL9A1_uc003pfe.3_5'UTR|COL9A1_uc003pff.3_Missense_Mutation_p.G110R	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	353	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						ACTGGAAATCCACGCGATCCA	0.289000													14	16					0	0	0.00074312	0	0
C6orf221	154288	broad.mit.edu	37	6	74072881	74072881	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:74072881G>A	uc003pgt.3	+	2	286	c.233G>A	c.(232-234)CGA>CAA	p.R78Q		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	78	KH; atypical.									skin(2)	2						CACGTGAATCGATTGGACCCT	0.572000													30	30					0	0	0.000409698	0	0
C6orf165	154313	broad.mit.edu	37	6	88125461	88125461	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:88125461G>A	uc003plv.2	+	5	433	c.341G>A	c.(340-342)CGA>CAA	p.R114Q	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.R114Q	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	114										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TCTGTTACCCGAGAAATTACA	0.398000													31	21					0	0	0.00058488	0	0
FUT9	10690	broad.mit.edu	37	6	96651903	96651903	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:96651903A>T	uc003pop.3	+	3	1213	c.872A>T	c.(871-873)GAT>GTT	p.D291V		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	291	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CATGTGGAAGATTATAACTCT	0.383000													24	26					0	0	0.000375601	0	0
GPR63	81491	broad.mit.edu	37	6	97246954	97246954	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:97246954G>A	uc010kcl.2	-	3	1132	c.654C>T	c.(652-654)CCC>CCT	p.P218P	GPR63_uc003pou.2_Silent_p.P218P	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	218	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		TCTGCAGGTCGGGGTTTCCTA	0.458000													39	42					0	0	0.000589545	0	0
SIM1	6492	broad.mit.edu	37	6	100841546	100841546	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:100841546G>A	uc003pqj.3	-	10	1594	c.1387C>T	c.(1387-1389)CAT>TAT	p.H463Y	SIM1_uc010kcu.2_Missense_Mutation_p.H463Y	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	463	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GCCTGGGTATGGAAATGCCTC	0.632000													24	28					0	0	0.000375601	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368331	111368331	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:111368331G>A	uc003puq.2	-	1	427	c.292C>T	c.(292-294)CCT>TCT	p.P98S		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						AGCATTGCAGGGAGTGCCTCC	0.488000													4	2					0	0	0.00024832	0	0
RFX6	222546	broad.mit.edu	37	6	117244339	117244339	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:117244339G>A	uc003pxm.2	+	14	1570	c.1507G>A	c.(1507-1509)GGT>AGT	p.G503S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	503					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GAGTTTTTTTGGTGCTCGAGT	0.323000													22	46					0	0	0.00152264	0	0
C6orf170	221322	broad.mit.edu	37	6	121560300	121560300	+	Silent	SNP	G	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:121560300G>C	uc003pyo.1	-	20	2348	c.2280C>G	c.(2278-2280)TCC>TCG	p.S760S	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_5'Flank|C6orf170_uc003pyp.1_Silent_p.S279S	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	760					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		ATTCCAGATTGGACCATAATT	0.328000													31	73					0	0	0.00127121	0	0
SMPDL3A	10924	broad.mit.edu	37	6	123122545	123122545	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:123122545A>G	uc003pzg.2	+	4	1083	c.562A>G	c.(562-564)AGG>GGG	p.R188G	SMPDL3A_uc003pzh.2_Missense_Mutation_p.R57G	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	188					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		TAGTACTTTAAGGAAAGGTAA	0.363000													21	51					0	0	0.00152264	0	0
NKAIN2	154215	broad.mit.edu	37	6	124604253	124604253	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:124604253G>A	uc003pzo.2	+	2	434	c.157G>A	c.(157-159)GGA>AGA	p.G53R	NKAIN2_uc003pzn.1_Missense_Mutation_p.G53R|NKAIN2_uc003pzp.2_Missense_Mutation_p.G52R|NKAIN2_uc010keq.2_Missense_Mutation_p.G53R|NKAIN2_uc010ker.2_5'UTR|NKAIN2_uc010kep.1_RNA	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	53	Helical; (Potential).					integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		TGGTTTGTTTGGAACTATTCA	0.353000													19	38					0	0	0.000958276	0	0
PTPRK	5796	broad.mit.edu	37	6	128403618	128403618	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:128403618G>A	uc003qbk.2	-	10	2108	c.1741C>T	c.(1741-1743)CCA>TCA	p.P581S	PTPRK_uc003qbj.2_Missense_Mutation_p.P581S|PTPRK_uc010kfc.2_Missense_Mutation_p.P581S|PTPRK_uc011ebu.1_Missense_Mutation_p.P581S|PTPRK_uc003qbl.1_Missense_Mutation_p.P451S|PTPRK_uc011ebv.1_Missense_Mutation_p.P581S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	581	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GCTGTGGCTGGACCAAAGCCT	0.418000													22	54					0	0	0.001512	0	0
LAMA2	3908	broad.mit.edu	37	6	129637213	129637213	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:129637213C>T	uc003qbn.2	+	27	4060	c.3955C>T	c.(3955-3957)CGA>TGA	p.R1319*	LAMA2_uc003qbo.2_Nonsense_Mutation_p.R1319*	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1319	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GGATGATCCTCGAGTCCATAG	0.348000													27	24					0	0	0.00058488	0	0
SYNE1	23345	broad.mit.edu	37	6	152847286	152847286	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:152847286C>T	uc010kiw.2	-	5	756	c.154G>A	c.(154-156)GAT>AAT	p.D52N	SYNE1_uc003qot.3_Missense_Mutation_p.D52N|SYNE1_uc003qou.3_Missense_Mutation_p.D52N|SYNE1_uc010kjb.1_Missense_Mutation_p.D52N|SYNE1_uc003qpa.1_Missense_Mutation_p.D52N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	52	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCAAAAAGATCGTCCACCACC	0.343000										HNSCC(10;0.0054)			20	36					0	0	0.00152264	0	0
TIAM2	26230	broad.mit.edu	37	6	155451067	155451067	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:155451067C>T	uc003qqb.2	+	6	1983	c.710C>T	c.(709-711)TCC>TTC	p.S237F	TIAM2_uc003qqe.2_Missense_Mutation_p.S237F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	237					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CGCCTGCGGTCCAGCAAAGGC	0.652000													14	22					0	0	0.000566183	0	0
TIAM2	26230	broad.mit.edu	37	6	155451084	155451084	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr6:155451084C>T	uc003qqb.2	+	6	2000	c.727C>T	c.(727-729)CTG>TTG	p.L243L	TIAM2_uc003qqe.2_Silent_p.L243L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	243					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGGCAGCTCCCTGAGTTCTGA	0.672000													16	28					0	0	0.000308642	0	0
FTSJ2	29960	broad.mit.edu	37	7	2275011	2275011	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:2275011G>A	uc003slm.2	-	3	516	c.487C>T	c.(487-489)CGG>TGG	p.R163W	MAD1L1_uc003slh.1_5'Flank|MAD1L1_uc003slf.1_5'Flank|MAD1L1_uc003slg.1_5'Flank|MAD1L1_uc010ksh.1_5'Flank|MAD1L1_uc003sli.1_5'Flank|MAD1L1_uc010ksi.1_5'Flank|MAD1L1_uc010ksj.2_5'Flank|FTSJ2_uc003slk.2_Missense_Mutation_p.R9W|FTSJ2_uc003sll.2_Missense_Mutation_p.R9W|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_Missense_Mutation_p.R9W	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	163					cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		TCGAGGTCCCGGAACCCTGTG	0.577000													14	30					0	0	0.000308642	0	0
SDK1	221935	broad.mit.edu	37	7	4152976	4152976	+	Silent	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:4152976C>A	uc003smx.2	+	24	3629	c.3490C>A	c.(3490-3492)CGG>AGG	p.R1164R	SDK1_uc010kso.2_Silent_p.R440R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1164	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TCCGTCTTCCCGGGTCATCCA	0.577000													32	123					8.88839e-20	6.54186e-19	0.000339439	1	0
POM121L12	285877	broad.mit.edu	37	7	53103527	53103527	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:53103527C>A	uc003tpz.2	+	1	179	c.163C>A	c.(163-165)CTG>ATG	p.L55M		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	55											0						TCCCTGGCCCCTGAGGTCCCT	0.697000													15	19					1.78486e-19	1.31017e-18	0.000958276	1	0
NCF1B	654816	broad.mit.edu	37	7	72640036	72640036	+	Silent	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:72640036T>C	uc011kes.1	+	3	271	c.267T>C	c.(265-267)CTT>CTC	p.L89L	FKBP6_uc003twz.2_Intron|NCF1B_uc011ker.1_Silent_p.L91L	NM_000265	NP_000256			neutrophil cytosolic factor 1												0						CCCACCTCCTTGACTTCTTCA	0.507000													4	21					0	0	0.000602214	0	0
BAZ1B	9031	broad.mit.edu	37	7	72892240	72892240	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:72892240T>A	uc003tyc.2	-	7	1896	c.1551A>T	c.(1549-1551)GAA>GAT	p.E517D		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	517	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GACTTCGCAATTCTTCTGGGA	0.428000													46	82					0	0	0.000781405	0	0
RSBN1L	222194	broad.mit.edu	37	7	77402515	77402515	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:77402515C>T	uc010ldt.1	+	6	1721	c.1677C>T	c.(1675-1677)CCC>CCT	p.P559P	RSBN1L_uc003ugm.2_Silent_p.P341P	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	559						nucleus				ovary(1)	1						CAAGTGAGCCCCGTGAGATGC	0.388000													35	42					0	0	0.00111076	0	0
SEMA3C	10512	broad.mit.edu	37	7	80418633	80418633	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:80418633A>T	uc003uhj.2	-	12	1905	c.1343T>A	c.(1342-1344)TTT>TAT	p.F448Y	SEMA3C_uc011kgw.1_Missense_Mutation_p.F466Y	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	448	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						TGTTCCGAGAAACAGGACATG	0.398000													37	84					0	0	0.00128727	0	0
HGF	3082	broad.mit.edu	37	7	81392179	81392179	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:81392179C>T	uc003uhl.2	-	2	263	c.98G>A	c.(97-99)AGG>AAG	p.R33K	HGF_uc003uhm.2_Missense_Mutation_p.R33K|HGF_uc003uhn.1_Missense_Mutation_p.R33K|HGF_uc003uho.1_Missense_Mutation_p.R33K|HGF_uc003uhp.2_Missense_Mutation_p.R33K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	33				QR -> HK (in Ref. 2; CAA34387).	epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCTTCTTTTCCTTTGTCCCTC	0.269000													9	27					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82584652	82584652	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:82584652T>C	uc003uhx.2	-	5	5906	c.5617A>G	c.(5617-5619)AGC>GGC	p.S1873G	PCLO_uc003uhv.2_Missense_Mutation_p.S1873G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1804					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTTCCGGGCTTATTTCAAAA	0.383000													44	49					0	0	0.00195071	0	0
PCLO	27445	broad.mit.edu	37	7	82585079	82585080	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:82585079_82585080GG>AA	uc003uhx.2	-	5	5478_5479	c.5189_5190CC>TT	c.(5188-5190)TCC>TTT	p.S1730F	PCLO_uc003uhv.2_Missense_Mutation_p.S1730F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1661					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGATGTAGGGGATGTACCAGG	0.500000													53	68					0	0	6.4e-05	0	0
SEMA3E	9723	broad.mit.edu	37	7	83119496	83119496	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:83119496G>A	uc003uhy.1	-	2	676	c.210C>T	c.(208-210)CTC>CTT	p.L70L		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	70	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CTCCCACGAAGAGCCTCTCTT	0.408000													15	38					0	0	0.000422831	0	0
C7orf51	222950	broad.mit.edu	37	7	100085944	100085944	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:100085944C>T	uc003uvd.1	+	4	759	c.600C>T	c.(598-600)TCC>TCT	p.S200S	C7orf51_uc003uve.1_5'UTR	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	200										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTAGGGGGTCCCGAGTAGCTG	0.637000													48	11					0	0	0.000781405	0	0
MUC17	140453	broad.mit.edu	37	7	100674925	100674925	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:100674925C>T	uc003uxp.1	+	3	281	c.228C>T	c.(226-228)GTC>GTT	p.V76V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	76	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTACAAATGTCGTGGAGCCAA	0.453000													42	18					0	0	0.000781405	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				73	17					0	0	0.000781405	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417712	150417713	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr7:150417712_150417713TG>AT	uc003whq.2	+	3	707_708	c.620_621TG>AT	c.(619-621)ATG>AAT	p.M207N	GIMAP1_uc003whp.2_Missense_Mutation_p.M215N	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	207	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGCTGGGGATGGTCGAGGGCT	0.688000													6	16					0	0	6.4e-05	0	0
CSMD1	64478	broad.mit.edu	37	8	2818684	2818684	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:2818684C>T	uc011kwk.1	-	62	10074	c.9684G>A	c.(9682-9684)CAG>CAA	p.Q3228Q	CSMD1_uc011kwj.1_Silent_p.Q2557Q|CSMD1_uc010lrg.2_Silent_p.Q1119Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3228	Extracellular (Potential).|Sushi 27.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGAGCTATTCTGTATTCCAA	0.348000													22	33					0	0	0.00106085	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24261580	24261580	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:24261580G>A	uc003xdz.2	+	13	1605	c.1385G>A	c.(1384-1386)GGA>GAA	p.G462E	ADAMDEC1_uc010lub.2_Missense_Mutation_p.G383E|ADAMDEC1_uc011lab.1_Missense_Mutation_p.G383E	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	462	Disintegrin.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GATTGCGGAGGAGATGCTCCA	0.428000													19	30					0	0	0.00152264	0	0
PREX2	80243	broad.mit.edu	37	8	68965372	68965372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:68965372G>A	uc003xxv.1	+	9	1011	c.984G>A	c.(982-984)TGG>TGA	p.W328*	PREX2_uc003xxu.1_Nonsense_Mutation_p.W328*|PREX2_uc011lez.1_Nonsense_Mutation_p.W263*	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	328	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTAATGGATGGAAGATACATA	0.318000													37	56					0	0	0.00195071	0	0
PREX2	80243	broad.mit.edu	37	8	69129884	69129884	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:69129884C>T	uc003xxv.1	+	38	4665	c.4638C>T	c.(4636-4638)ATC>ATT	p.I1546I		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1546					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGCAAGCCATCATTCTGGCCA	0.547000													10	22					0	0	0.000978159	0	0
PKIA	5569	broad.mit.edu	37	8	79510635	79510635	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:79510635A>G	uc003yba.2	+	3	540	c.16A>G	c.(16-18)ACT>GCT	p.T6A	PKIA_uc003ybb.2_Missense_Mutation_p.T6A|PKIA_uc010lzo.2_Missense_Mutation_p.T6A	NM_006823	NP_006814	P61925	IPKA_HUMAN	cAMP-dependent protein kinase inhibitor alpha	6							cAMP-dependent protein kinase inhibitor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGATGTGGAAACTACATATGC	0.358000													27	68					0	0	0.000339439	0	0
CA2	760	broad.mit.edu	37	8	86389385	86389385	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:86389385G>C	uc003ydk.2	+	6	724	c.544G>C	c.(544-546)GGC>CGC	p.G182R		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	182					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CGATCCTCGTGGCCTCCTTCC	0.502000													63	121					0	0	0.000781405	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885171	88885171	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:88885171G>A	uc003ydz.2	-	1	1126	c.1029C>T	c.(1027-1029)CTC>CTT	p.L343L		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	343	WD 2.									ovary(1)	1						GGCCATGACGGAGGCTCCAGA	0.602000													23	37					0	0	0.000586117	0	0
MMP16	4325	broad.mit.edu	37	8	89128811	89128811	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:89128811G>A	uc003yeb.3	-	6	1290	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P	MMP16_uc003yec.2_Silent_p.P336P	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	336	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GTTTGGCTCCGGGATAGGAGG	0.498000													12	78					0	0	0.00136819	0	0
SLC26A7	115111	broad.mit.edu	37	8	92364076	92364076	+	Silent	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:92364076C>T	uc003yex.2	+	11	1457	c.1179C>T	c.(1177-1179)GTC>GTT	p.V393V	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.V393V|SLC26A7_uc003yfa.2_Silent_p.V393V	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	393	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TCCTTATAGTCATCTATGCAA	0.338000													73	104					0	0	0.000781405	0	0
CSMD3	114788	broad.mit.edu	37	8	114326902	114326902	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:114326902C>T	uc003ynu.2	-	2	458	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	CSMD3_uc003ynt.2_Missense_Mutation_p.R60Q|CSMD3_uc011lhx.1_Missense_Mutation_p.R100Q|CSMD3_uc010mcx.1_Missense_Mutation_p.R100Q|CSMD3_uc003ynx.3_Missense_Mutation_p.R100Q	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	100	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TATTCTATTTCGTTCTTCTGC	0.353000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			59	91					0	0	0.000781405	0	0
UTP23	84294	broad.mit.edu	37	8	117778754	117778755	+	Translation_Start_Site	DNP	GG	AA	AA			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:117778754_117778755GG>AA	uc003yoc.2	+	1	13_14	c.-88_-87GG>AA	c.(-90--85)CGGGTG>CGAATG		EIF3H_uc003yob.2_5'Flank	NM_032334	NP_115710	Q9BRU9	UTP23_HUMAN	UTP23, small subunit (SSU) processome component,						rRNA processing	nucleolus					0						TTCATTTCCGGGTGAAACTGGC	0.599000											OREG0018934	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	10					0	0	6.4e-05	0	0
COL22A1	169044	broad.mit.edu	37	8	139791793	139791793	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr8:139791793C>T	uc003yvd.2	-	14	2110	c.1663G>A	c.(1663-1665)GAG>AAG	p.E555K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	555	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCTCCCAGCTCTCCTGGCTCC	0.622000										HNSCC(7;0.00092)			15	52					0	0	0.00121646	0	0
C9orf82	79886	broad.mit.edu	37	9	26842533	26842533	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:26842533G>A	uc003zqc.2	-	6	864	c.852C>T	c.(850-852)GTC>GTT	p.V284V	C9orf82_uc003zqb.2_Silent_p.V139V	NM_024828	NP_079104	Q9H8G2	CI082_HUMAN	hypothetical protein LOC79886	284	Potential.										0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(42;1.39e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		CTTCACTTTGGACTGTATTTT	0.458000													86	73					0	0	0.000781405	0	0
TPM2	7169	broad.mit.edu	37	9	35689769	35689769	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:35689769C>T	uc003zxq.2	-	1	285	c.46G>A	c.(46-48)GAG>AAG	p.E16K	TPM2_uc003zxr.2_Missense_Mutation_p.E16K|TPM2_uc003zxs.2_Missense_Mutation_p.E16K|TPM2_uc010mkz.2_Missense_Mutation_p.E16K|TPM2_uc011lpa.1_Missense_Mutation_p.E16K	NM_213674	NP_998839	P07951	TPM2_HUMAN	tropomyosin 2 (beta) isoform 2	16	By similarity.				muscle filament sliding|regulation of ATPase activity	cytosol|muscle thin filament tropomyosin	actin binding|structural constituent of muscle			ovary(1)	1	all_epithelial(49;0.121)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ATGGCGTTCTCCTTGTCCAGC	0.672000													77	64					0	0	0.000781405	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396134	38396134	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:38396134C>T	uc004aay.2	+	2	501	c.389C>T	c.(388-390)CCT>CTT	p.P130L		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	130					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	AATGGGAAGCCTTTCCAAGAG	0.577000													62	33					0	0	0.000781405	0	0
SVEP1	79987	broad.mit.edu	37	9	113238484	113238484	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:113238484C>T	uc010mtz.2	-	14	2936	c.2599G>A	c.(2599-2601)GGA>AGA	p.G867R	SVEP1_uc010mua.1_Missense_Mutation_p.G867R|SVEP1_uc004beu.2_Missense_Mutation_p.G867S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	867					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATTTAATTACCAATTGCAAAG	0.348000													34	28					0	0	0.000409698	0	0
AKNA	80709	broad.mit.edu	37	9	117118331	117118331	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:117118331G>A	uc004biq.3	-	13	3067	c.2932C>T	c.(2932-2934)CCC>TCC	p.P978S	AKNA_uc004bin.3_Missense_Mutation_p.P225S|AKNA_uc004bio.3_Missense_Mutation_p.P438S|AKNA_uc004bip.3_Missense_Mutation_p.P897S|AKNA_uc004bir.3_Missense_Mutation_p.P978S|AKNA_uc004bis.3_Missense_Mutation_p.P978S|AKNA_uc010mve.2_Missense_Mutation_p.P859S|AKNA_uc004bit.1_5'Flank	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	978					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GCTCTTCTGGGAATCAGAGAA	0.627000													24	23					0	0	0.00127121	0	0
RABGAP1	23637	broad.mit.edu	37	9	125748616	125748616	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr9:125748616A>G	uc011lzh.1	+	4	642	c.508A>G	c.(508-510)ATG>GTG	p.M170V	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc004bnm.1_Missense_Mutation_p.M170V	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	170	PID.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGCCTTAAGGATGATGTCCAT	0.468000													73	30					0	0	0.000781405	0	0
MXRA5	25878	broad.mit.edu	37	X	3227970	3227970	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:3227970C>T	uc004crg.3	-	7	8431	c.8274G>A	c.(8272-8274)ATG>ATA	p.M2758I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2758	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGGAATCCCCATAGCCATGC	0.572000													30	6					0	0	0.001512	0	0
FGF16	8823	broad.mit.edu	37	X	76709692	76709692	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:76709692C>T	uc011mqp.1	+	1	319	c.46C>T	c.(46-48)CGG>TGG	p.R16W		NM_003868	NP_003859	O43320	FGF16_HUMAN	fibroblast growth factor 16	107					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			lung(1)	1						GATCAGCATCCGGGGAGTGGA	0.423000													9	1					0	0	0.00185496	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83319402	83319402	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:83319402C>T	uc004eej.1	-	22	2198	c.2121G>A	c.(2119-2121)ATG>ATA	p.M707I	RPS6KA6_uc011mqt.1_Missense_Mutation_p.M707I|RPS6KA6_uc011mqu.1_Missense_Mutation_p.M604I	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	707					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						ATGTTGCAACCATTGCTCCCT	0.398000													16	1					0	0	0.000422831	0	0
POF1B	79983	broad.mit.edu	37	X	84561241	84561241	+	Silent	SNP	T	C	C			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:84561241T>C	uc004eer.2	-	12	1409	c.1263A>G	c.(1261-1263)GAA>GAG	p.E421E	POF1B_uc004ees.2_Silent_p.E421E	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	421	Potential.						actin binding				0						AATATTCCAGTTCTTTTAGTC	0.338000													72	16					0	0	0.000781405	0	0
BTK	695	broad.mit.edu	37	X	100615121	100615121	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:100615121G>A	uc004ehg.2	-	9	987	c.794C>T	c.(793-795)CCT>CTT	p.P265L	BTK_uc004ehf.2_5'Flank|BTK_uc010nnh.2_5'Flank|BTK_uc010nni.2_5'Flank|BTK_uc004ehe.2_5'Flank|BTK_uc010nnj.2_5'Flank|BTK_uc010nnk.2_5'Flank|BTK_uc010nnl.2_5'Flank|BTK_uc010nnm.2_5'Flank|BTK_uc010nnn.2_Missense_Mutation_p.P265L|BTK_uc010nno.2_Missense_Mutation_p.P299L|BTK_uc004ehh.1_5'Flank|BTK_uc004ehi.2_Missense_Mutation_p.P265L	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	265	SH3.		Missing (in XLA; severe).		calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						ATAGTTACTAGGAATGTAGCC	0.468000									Agammaglobulinemia_X-linked				61	16					0	0	0.000781405	0	0
PLS3	5358	broad.mit.edu	37	X	114871204	114871204	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:114871204C>T	uc004eqd.2	+	8	1195	c.805C>T	c.(805-807)CCA>TCA	p.P269S	PLS3_uc010nqg.2_Intron|PLS3_uc011mtf.1_Missense_Mutation_p.P247S|PLS3_uc004eqe.2_Missense_Mutation_p.P269S|PLS3_uc011mtg.1_Missense_Mutation_p.P242S|PLS3_uc011mth.1_Missense_Mutation_p.P224S	NM_005032	NP_005023	P13797	PLST_HUMAN	plastin 3	269	CH 2.|Actin-binding 1.					cytoplasm	actin binding|calcium ion binding			lung(1)|breast(1)	2						GAAATTGTCTCCAGAAGAGCT	0.383000													104	18					0	0	0.000781405	0	0
SLC6A14	11254	broad.mit.edu	37	X	115590071	115590071	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:115590071G>A	uc004eqi.2	+	14	1983	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	627	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TCCTAAAAAAGAGGCTGACCA	0.383000													56	24					0	0	0.000781405	0	0
MAGEC3	139081	broad.mit.edu	37	X	140953391	140953391	+	Silent	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:140953391G>A	uc011mwp.1	+	2	258	c.258G>A	c.(256-258)AAG>AAA	p.K86K		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	86										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CATACTTCAAGGTAAGGACTC	0.537000													26	15					0	0	0.000339439	0	0
PLXNA3	55558	broad.mit.edu	37	X	153692629	153692629	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chrX:153692629G>A	uc004flm.2	+	8	1974	c.1801G>A	c.(1801-1803)GAG>AAG	p.E601K		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	601	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTCCCTCCAGGAGCTCCGAGC	0.701000													5	1					0	0	0.00116845	0	0
RNF213	57674	broad.mit.edu	37	17	78357707	78357707	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr17:78357707delC	uc002jyh.1	+	34	8743	c.8520delC	c.(8518-8520)ATCfs	p.I2840fs	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GAGTGCCCATCCTCTGGCATT	0.507													40	52	---	---	---	---					
PSG9	5678	broad.mit.edu	37	19	43772101	43772101	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr19:43772101delT	uc002owd.3	-	2	364	c.265delA	c.(265-267)ATTfs	p.I89fs	PSG9_uc002owe.3_Frame_Shift_Del_p.I89fs|PSG9_uc010xwm.1_Frame_Shift_Del_p.I89fs|PSG9_uc002owf.3_Frame_Shift_Del_p.I89fs|PSG9_uc002owg.2_Frame_Shift_Del_p.I89fs|PSG9_uc002owh.2_Frame_Shift_Del_p.I89fs	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	89	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CCATATATAATTATTTTACCA	0.433													83	147	---	---	---	---					
MIR567	693152	broad.mit.edu	37	3	111831724	111831724	+	RNA	DEL	A	-	-			TCGA-ER-A19H-06A-12D-A196-08	TCGA-ER-A19H-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25298db1-054a-4d28-95e2-1e05f7ecc43d	a8e23db4-c8f9-40d6-8352-f572d3842e51	g.chr3:111831724delA	hsa-mir-567|MI0003573	+			c.77delA			C3orf52_uc003dyq.3_Intron|C3orf52_uc011bhs.1_Intron|C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron																	0						ATGCAAAACTAAAAAAAAAAA	0.323													3	5	---	---	---	---					
