Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLEKHN1	84069	broad.mit.edu	37	1	909364	909364	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:909364G>A	uc001ace.2	+	13	1777	c.1742G>A	c.(1741-1743)AGA>AAA	p.R581K	PLEKHN1_uc001acd.2_Missense_Mutation_p.R529K|PLEKHN1_uc001acf.2_Missense_Mutation_p.R494K	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	581											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CTGCAGTCCAGAGCCGCTCAG	0.706													5	8					0	0	0.014758	0	0
PRDM16	63976	broad.mit.edu	37	1	3328487	3328487	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:3328487G>A	uc001akf.2	+	9	1806	c.1726G>A	c.(1726-1728)GAG>AAG	p.E576K	PRDM16_uc001akc.2_Missense_Mutation_p.E576K|PRDM16_uc001akd.2_Missense_Mutation_p.E576K|PRDM16_uc001ake.2_Missense_Mutation_p.E576K|PRDM16_uc009vlh.2_Missense_Mutation_p.E277K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	576					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TGCGGGGCCCGAGGAGAAGTT	0.662			T	EVI1	MDS|AML								16	27					0	0	0.003163	0	0
CHD5	26038	broad.mit.edu	37	1	6188969	6188969	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:6188969G>A	uc001amb.1	-	23	3648	c.3548C>T	c.(3547-3549)TCC>TTC	p.S1183F	CHD5_uc001alz.1_Missense_Mutation_p.S40F|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1183	Helicase C-terminal.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CTTGGTCATGGACCCCGACTT	0.652													12	24					0	0	0.002450	0	0
CHD5	26038	broad.mit.edu	37	1	6214781	6214781	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:6214781G>A	uc001amb.1	-	5	784	c.684C>T	c.(682-684)GTC>GTT	p.V228V		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	228					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCGGGGGGCTGACGGCTAGCG	0.547													12	17					0	0	0.002450	0	0
SPSB1	80176	broad.mit.edu	37	1	9416002	9416002	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:9416002A>T	uc010oae.1	+	2	391	c.52A>T	c.(52-54)ACG>TCG	p.T18S	SPSB1_uc001apv.2_Missense_Mutation_p.T18S	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	18					intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		GAGGGACCCCACGTACAGGCC	0.577													17	35					0	0	0.004990	0	0
CLSTN1	22883	broad.mit.edu	37	1	9793578	9793578	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:9793578C>A	uc001aqh.2	-	16	3067	c.2308G>T	c.(2308-2310)GAG>TAG	p.E770*	CLSTN1_uc001aqi.2_Nonsense_Mutation_p.E760*|CLSTN1_uc010oag.1_Nonsense_Mutation_p.E751*|CLSTN1_uc001aqf.2_Nonsense_Mutation_p.E6*	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	770	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		TGCAAAACCTCCTCGTAGCTG	0.597													12	24					2.27111e-07	2.59278e-07	0.013537	1	0
KIF1B	23095	broad.mit.edu	37	1	10316325	10316325	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:10316325C>T	uc001aqx.3	+	3	329	c.127C>T	c.(127-129)CCA>TCA	p.P43S	KIF1B_uc001aqv.3_Missense_Mutation_p.P43S|KIF1B_uc001aqw.3_Missense_Mutation_p.P43S|KIF1B_uc001aqy.2_Missense_Mutation_p.P43S|KIF1B_uc001aqz.2_Missense_Mutation_p.P43S|KIF1B_uc001ara.2_Missense_Mutation_p.P43S|KIF1B_uc001arb.2_Missense_Mutation_p.P43S|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	43	Kinesin-motor.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CCCAAAGAATCCAAAGGAAGC	0.388													22	25					0	0	0.010504	0	0
FBXO44	93611	broad.mit.edu	37	1	11718602	11718602	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:11718602G>A	uc001asm.2	+	4	531	c.405G>A	c.(403-405)AAG>AAA	p.K135K	FBXO44_uc001ask.2_Intron|FBXO44_uc010oaq.1_3'UTR|FBXO44_uc001asl.2_Silent_p.K135K|FBXO44_uc001asn.2_Intron|FBXO44_uc010oar.1_Missense_Mutation_p.V126I|FBXO44_uc010oas.1_Intron	NM_033182	NP_149438	Q9H4M3	FBX44_HUMAN	F-box protein 44 isoform 1	135	FBA.				protein catabolic process	SCF ubiquitin ligase complex	protein binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.41e-06)|COAD - Colon adenocarcinoma(227;0.000255)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000758)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGCCTCAAGTCCCAGGTGG	0.657													16	14					0	0	0.004007	0	0
MIIP	60672	broad.mit.edu	37	1	12082327	12082327	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:12082327C>T	uc001ato.1	+	3	470	c.290C>T	c.(289-291)CCT>CTT	p.P97L		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	97										ovary(1)	1						TCTCTCCCACCTGCCAAATGC	0.697													19	31					0	0	0.007413	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885059	12885059	+	Missense_Mutation	SNP	C	G	G	rs143004725	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:12885059C>G	uc001auk.2	-	4	1248	c.1052G>C	c.(1051-1053)TGC>TCC	p.C351S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	351	LRR 6.										0						GGTGGCCATGCAGATGGGATT	0.532													5	126					0	0	0.001168	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	C	C	rs60558629		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:12887612T>C	uc001auk.2	-	3	441	c.245A>G	c.(244-246)CAT>CGT	p.H82R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	82											0						GAAGCACCCATGGGCCATAGC	0.488													4	226					0	0	0.009096	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001263	13001263	+	Silent	SNP	C	T	T	rs150586267		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:13001263C>T	uc001auq.2	-	3	506	c.420G>A	c.(418-420)AGG>AGA	p.R140R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	140											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCCTCTCATCCTTGGACAGT	0.507													86	210					0	0	0.014410	0	0
LOC440563	440563	broad.mit.edu	37	1	13183343	13183343	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:13183343C>T	uc010obg.1	-	1	625	c.530G>A	c.(529-531)GGA>GAA	p.G177E		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	177						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						AAGGTCATCTCCTTTCAGCTT	0.448													61	406					0	0	0.014410	0	0
SPEN	23013	broad.mit.edu	37	1	16258177	16258177	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:16258177G>A	uc001axk.1	+	11	5646	c.5442G>A	c.(5440-5442)AAG>AAA	p.K1814K	SPEN_uc010obp.1_Silent_p.K1773K	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1814					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TTGCTGCAAAGGATAAAAAGC	0.507													21	30					0	0	0.010504	0	0
NBPF1	55672	broad.mit.edu	37	1	16893737	16893737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:16893737G>A	uc009vos.1	-	26	3889	c.3001C>T	c.(3001-3003)CCC>TCC	p.P1001S	NBPF1_uc009vot.1_Missense_Mutation_p.P384S|NBPF1_uc001ayz.1_Missense_Mutation_p.P384S|NBPF1_uc010oce.1_Missense_Mutation_p.P655S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1001	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CTTCTGTAGGGCTGGCATGAG	0.478													28	771					0	0	0.005443	0	0
PADI6	353238	broad.mit.edu	37	1	17727763	17727763	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:17727763G>A	uc001bak.1	+	17	1914	c.1914G>A	c.(1912-1914)AAG>AAA	p.K638K		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	630					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CCCAAATCAAGGGGACCTGCT	0.542													28	32					0	0	0.007291	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809378	18809378	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:18809378G>A	uc001bax.2	+	1	1955	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E417K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	635	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCGTGCCAAGGAAATCTTCGT	0.711													10	10					0	0	0.006214	0	0
KIF17	57576	broad.mit.edu	37	1	21014191	21014191	+	Missense_Mutation	SNP	G	A	A	rs140327262		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:21014191G>A	uc001bdr.3	-	8	1746	c.1628C>T	c.(1627-1629)TCG>TTG	p.S543L	KIF17_uc001bdp.3_5'Flank|KIF17_uc001bdq.3_5'Flank|KIF17_uc009vpx.2_Intron|KIF17_uc001bds.3_Missense_Mutation_p.S543L	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	543					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TTCTTCGAGCGAGGATGACTC	0.572													14	31					0	0	0.002450	0	0
NBPF3	84224	broad.mit.edu	37	1	21808248	21808248	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:21808248C>T	uc001ber.2	+	13	1942	c.1592C>T	c.(1591-1593)TCT>TTT	p.S531F	NBPF3_uc001bes.2_Missense_Mutation_p.S475F|NBPF3_uc009vqb.2_Missense_Mutation_p.S519F|NBPF3_uc010odm.1_Missense_Mutation_p.S461F	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	531	NBPF 4.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GTTGGCTTTTCTCTTGACGTG	0.458													18	9					0	0	0.016522	0	0
ALPL	249	broad.mit.edu	37	1	21900160	21900160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:21900160C>T	uc001bet.2	+	9	1122	c.865C>T	c.(865-867)CTC>TTC	p.L289F	ALPL_uc010odn.1_Missense_Mutation_p.L237F|ALPL_uc010odo.1_Missense_Mutation_p.L234F|ALPL_uc010odp.1_Missense_Mutation_p.L212F|ALPL_uc001beu.3_Missense_Mutation_p.L289F	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	289			L -> F (in HOPS).		response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	CTCCTCAGGTCTCTTCGAGCC	0.612													10	21					0	0	0.006214	0	0
SEPN1	57190	broad.mit.edu	37	1	26131722	26131722	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:26131722C>T	uc010oer.1	+	6	548	c.493C>T	c.(493-495)CTG>TTG	p.L165L	SEPN1_uc010oes.1_Silent_p.L131L	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	165						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		ATTCCAGCCTCTGCTCCCGGA	0.592													16	35					0	0	0.004990	0	0
ARID1A	8289	broad.mit.edu	37	1	27094349	27094349	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:27094349G>A	uc001bmv.1	+	11	3430	c.3057G>A	c.(3055-3057)GAG>GAA	p.E1019E	ARID1A_uc001bmt.1_Silent_p.E1019E|ARID1A_uc001bmu.1_Silent_p.E1019E|ARID1A_uc001bmw.1_Silent_p.E636E	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1019	ARID.				androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GTGAGCCTGAGAGGAAGATGT	0.488			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								29	36					0	0	0.007291	0	0
FCN3	8547	broad.mit.edu	37	1	27697379	27697379	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:27697379C>T	uc001boa.2	-	6	484	c.478G>A	c.(478-480)GAA>AAA	p.E160K	FCN3_uc001bob.2_Missense_Mutation_p.E149K	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor	160	Fibrinogen C-terminal.				complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AGCCAGAATTCAGACTCTTGG	0.557													11	26					0	0	0.010729	0	0
GJB4	127534	broad.mit.edu	37	1	35227548	35227548	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:35227548C>T	uc001bxv.1	+	2	1063	c.693C>T	c.(691-693)CCC>CCT	p.P231P	GJB4_uc001bxw.3_Silent_p.P231P	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	231	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				AATGCCTACCCGATACGTGCC	0.622													21	46					0	0	0.012319	0	0
ZMYM4	9202	broad.mit.edu	37	1	35847216	35847216	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:35847216C>T	uc001byt.2	+	9	1506	c.1426C>T	c.(1426-1428)CGT>TGT	p.R476C	ZMYM4_uc009vuu.2_Missense_Mutation_p.R444C|ZMYM4_uc001byu.2_Missense_Mutation_p.R152C|ZMYM4_uc009vuv.2_Missense_Mutation_p.R215C	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	476	MYM-type 3.				multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CTCTAAGTTTCGTTCTGCTAA	0.423													27	58					0	0	0.005443	0	0
ZMYM4	9202	broad.mit.edu	37	1	35870710	35870710	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:35870710G>A	uc001byt.2	+	24	3695	c.3615G>A	c.(3613-3615)CTG>CTA	p.L1205L	ZMYM4_uc009vuu.2_Silent_p.L1173L|ZMYM4_uc001byu.2_Silent_p.L881L|ZMYM4_uc009vuv.2_Silent_p.L944L	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1205					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGATGACACTGAAATACATGT	0.478													17	36					0	0	0.004990	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35932273	35932273	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:35932273G>A	uc001byx.2	-	7	1395	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F	KIAA0319L_uc010ohv.1_Silent_p.F21F|KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Silent_p.F379F|KIAA0319L_uc010ohx.1_3'UTR	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	379	PKD 1.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CAATCACTTTGAATTCATACA	0.438													19	36					0	0	0.014323	0	0
CLSPN	63967	broad.mit.edu	37	1	36214053	36214053	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:36214053G>A	uc001bzi.2	-	13	2505	c.2425C>T	c.(2425-2427)CCT>TCT	p.P809S	CLSPN_uc009vux.2_Missense_Mutation_p.P745S	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	809					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCAGGGGAAGGAGATCTGAAT	0.488													24	56					0	0	0.005443	0	0
MAP7D1	55700	broad.mit.edu	37	1	36638151	36638151	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:36638151G>T	uc001bzz.2	+	4	763	c.547G>T	c.(547-549)GAG>TAG	p.E183*	MAP7D1_uc001caa.2_Nonsense_Mutation_p.E183*|MAP7D1_uc001cab.2_Nonsense_Mutation_p.E183*|MAP7D1_uc001cac.2_5'UTR	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	183	Potential.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				GCGCCGGCTGGAGGAGCAACG	0.632													9	17					3.09899e-07	3.53575e-07	0.004482	1	0
GNL2	29889	broad.mit.edu	37	1	38034506	38034506	+	Missense_Mutation	SNP	G	A	A	rs144297344		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:38034506G>A	uc001cbk.2	-	13	1977	c.1814C>T	c.(1813-1815)GCC>GTC	p.A605V		NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	605					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				CTGATATTTGGCAATCTTCTC	0.408													56	104					0	0	0.014410	0	0
FHL3	2275	broad.mit.edu	37	1	38463360	38463360	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:38463360G>A	uc001ccj.2	-	5	771	c.684C>T	c.(682-684)ATC>ATT	p.I228I	FHL3_uc001cck.2_Silent_p.I228I|FHL3_uc001ccl.2_Silent_p.I228I|FHL3_uc001ccm.2_Silent_p.I120I	NM_004468	NP_004459	Q13643	FHL3_HUMAN	four and a half LIM domains 3	228	LIM zinc-binding 4.				muscle organ development		zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TCCCACCTACGATGGGGCGCT	0.582													21	31					0	0	0.014323	0	0
CAP1	10487	broad.mit.edu	37	1	40525125	40525125	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:40525125C>T	uc001cfa.3	+	2	336	c.107C>T	c.(106-108)TCA>TTA	p.S36L	CAP1_uc010ojd.1_RNA|CAP1_uc001cey.3_Missense_Mutation_p.S36L|CAP1_uc001cez.3_Missense_Mutation_p.S36L|CAP1_uc009vvz.2_Missense_Mutation_p.S36L|CAP1_uc010oje.1_Nonsense_Mutation_p.Q6*	NM_006367	NP_006358	Q01518	CAP1_HUMAN	adenylyl cyclase-associated protein	36					activation of adenylate cyclase activity|axon guidance|establishment or maintenance of cell polarity|platelet activation|platelet degranulation|signal transduction	plasma membrane	actin binding			ovary(1)	1	Lung NSC(20;5.03e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;4.63e-18)|Epithelial(16;1.27e-16)|all cancers(16;2.3e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GACAGTCCTTCAAAAGGTAAG	0.483													25	35					0	0	0.018920	0	0
PTPRF	5792	broad.mit.edu	37	1	44069654	44069654	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:44069654G>A	uc001cjr.2	+	16	3171	c.2831G>A	c.(2830-2832)AGG>AAG	p.R944K	PTPRF_uc001cjs.2_Missense_Mutation_p.R935K|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_Missense_Mutation_p.R504K|PTPRF_uc001cjv.2_Missense_Mutation_p.R404K|PTPRF_uc001cjw.2_Missense_Mutation_p.R170K	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	944	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CTGGCGGAGAGGAACGGGCGC	0.607													10	18					0	0	0.008291	0	0
PTPRF	5792	broad.mit.edu	37	1	44070956	44070956	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:44070956G>A	uc001cjr.2	+	18	3571	c.3231G>A	c.(3229-3231)CTG>CTA	p.L1077L	PTPRF_uc001cjs.2_Silent_p.L1068L|PTPRF_uc001cju.2_Silent_p.L455L|PTPRF_uc009vwt.2_Silent_p.L637L|PTPRF_uc001cjv.2_Silent_p.L537L|PTPRF_uc001cjw.2_Silent_p.L303L	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1077	Extracellular (Potential).|Fibronectin type-III 8.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CGTTTGTGCTGATGAACCGTG	0.622													26	32					0	0	0.009535	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402363	47402363	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:47402363G>A	uc001cqp.3	-	4	534	c.483C>T	c.(481-483)CTC>CTT	p.L161L	CYP4A11_uc001cqq.2_Silent_p.L161L|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	161					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGTCTGCCATGAGCCCCACAT	0.562													15	22					0	0	0.004990	0	0
C1orf87	127795	broad.mit.edu	37	1	60456423	60456423	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:60456423G>A	uc001czs.1	-	12	1655	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	C1orf87_uc001czr.1_Silent_p.I113I	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	521							calcium ion binding			ovary(1)|breast(1)	2						AGGCCTGGTCGATTTTCTGAG	0.483													63	116					0	0	0.014410	0	0
NFIA	4774	broad.mit.edu	37	1	61872334	61872334	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:61872334C>G	uc001czw.2	+	9	1839	c.1355C>G	c.(1354-1356)CCG>CGG	p.P452R	NFIA_uc001czy.2_Missense_Mutation_p.P444R|NFIA_uc010oos.1_Missense_Mutation_p.P497R|NFIA_uc001czv.2_Missense_Mutation_p.P452R|NFIA_uc001czx.2_Missense_Mutation_p.P100R|NFIA_uc009wae.2_RNA	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	452					DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						GTGCCTCTGCCGGTGCCAGAC	0.622													7	8					0	0	0.001984	0	0
L1TD1	54596	broad.mit.edu	37	1	62672774	62672774	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:62672774G>A	uc001dae.3	+	3	776	c.474G>A	c.(472-474)AAG>AAA	p.K158K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	158										ovary(1)|skin(1)	2						atgatggtaagaaattacccc	0													5	8					0	0	0.014758	0	0
KANK4	163782	broad.mit.edu	37	1	62739307	62739307	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:62739307G>A	uc001dah.3	-	3	1846	c.1469C>T	c.(1468-1470)TCT>TTT	p.S490F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	490										ovary(3)|skin(2)|lung(1)	6						GCTATGTACAGAGGAGGTAAG	0.572													24	59					0	0	0.018920	0	0
DNAJC6	9829	broad.mit.edu	37	1	65845150	65845150	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:65845150G>A	uc001dcd.1	+	5	602	c.438G>A	c.(436-438)CGG>CGA	p.R146R	DNAJC6_uc001dcc.1_Silent_p.R177R|DNAJC6_uc010opc.1_Silent_p.R133R|DNAJC6_uc001dce.1_Silent_p.R203R	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	146	Phosphatase tensin-type.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						CTGTGTGTCGGAATATGTATA	0.463													30	36					0	0	0.012213	0	0
WDR78	79819	broad.mit.edu	37	1	67313257	67313257	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:67313257G>A	uc001dcx.2	-	8	1257	c.1201C>T	c.(1201-1203)CAT>TAT	p.H401Y	WDR78_uc001dcy.2_Missense_Mutation_p.H401Y|WDR78_uc009waw.2_Missense_Mutation_p.H147Y|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	401										ovary(2)	2						AAGTCCTGATGAAATTTGTCA	0.333													13	21					0	0	0.002450	0	0
LRRC40	55631	broad.mit.edu	37	1	70614327	70614327	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:70614327G>A	uc001der.1	-	14	1598	c.1546C>T	c.(1546-1548)CGT>TGT	p.R516C		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	516	LRR 17.									ovary(1)	1						GTGAAGATACGATATAGAACT	0.338													11	21					0	0	0.010729	0	0
C1orf173	127254	broad.mit.edu	37	1	75038616	75038616	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:75038616C>T	uc001dgg.2	-	14	2997	c.2778G>A	c.(2776-2778)GCG>GCA	p.A926A		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	926	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTCCGATGTCGCTGCCTCTC	0.552													36	74					0	0	0.004878	0	0
C1orf173	127254	broad.mit.edu	37	1	75086497	75086497	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:75086497G>A	uc001dgg.2	-	8	1140	c.921C>T	c.(919-921)TTC>TTT	p.F307F	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.F101F	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	307										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTTCATCCCGGAAGTCAGGAT	0.358													28	24					0	0	0.007291	0	0
C1orf173	127254	broad.mit.edu	37	1	75097441	75097441	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:75097441G>A	uc001dgg.2	-	7	994	c.775C>T	c.(775-777)CGT>TGT	p.R259C	C1orf173_uc001dgi.3_Missense_Mutation_p.R53C	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	259	Poly-Arg.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGGTTGGACGAAATCTTCTC	0.363													10	33					0	0	0.010729	0	0
PTGFR	5737	broad.mit.edu	37	1	79002215	79002215	+	Missense_Mutation	SNP	G	A	A	rs151178719		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:79002215G>A	uc001din.2	+	3	1189	c.923G>A	c.(922-924)CGA>CAA	p.R308Q	PTGFR_uc001dim.2_3'UTR	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	308	Cytoplasmic (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	ATTCTTCTACGAAAGGCTGTC	0.388													21	47					0	0	0.012319	0	0
LPHN2	23266	broad.mit.edu	37	1	82433739	82433739	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:82433739C>T	uc001dit.3	+	13	2509	c.2328C>T	c.(2326-2328)TCC>TCT	p.S776S	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.S776S|LPHN2_uc001div.2_Silent_p.S776S|LPHN2_uc009wcd.2_Silent_p.S776S|LPHN2_uc001diw.2_Silent_p.S360S|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	789	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CAAACTGCTCCTTCTGGAACT	0.388													12	31					0	0	0.002450	0	0
MCOLN2	255231	broad.mit.edu	37	1	85417942	85417942	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:85417942T>A	uc001dkm.2	-	6	972	c.731A>T	c.(730-732)TAT>TTT	p.Y244F	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	244						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CTGAAAGACATAACAGTCTGG	0.348													14	17					0	0	0.002450	0	0
WDR63	126820	broad.mit.edu	37	1	85575818	85575818	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:85575818G>A	uc001dkt.2	+	16	1977	c.1786G>A	c.(1786-1788)GAC>AAC	p.D596N	WDR63_uc009wcl.2_Missense_Mutation_p.D557N	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	596										upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		CAAAACACAAGGTAACTGCCT	0.254													10	29					0	0	0.006214	0	0
BCL10	8915	broad.mit.edu	37	1	85733512	85733512	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:85733512G>A	uc001dkz.2	-	4	1205	c.500C>T	c.(499-501)TCT>TTT	p.S167F		NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	167					apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		AGAATTAGTAGAAAAAAAGGG	0.443			T	IGH@	MALT 								9	23					0	0	0.008291	0	0
COL24A1	255631	broad.mit.edu	37	1	86203099	86203099	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:86203099G>T	uc001dlj.2	-	58	4804	c.4762C>A	c.(4762-4764)CCT>ACT	p.P1588T	COL24A1_uc001dli.2_Missense_Mutation_p.P703T|COL24A1_uc010osd.1_Missense_Mutation_p.P888T|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1588	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		GAAACAGGAGGTAAGCATGTC	0.348													5	6					0.00198382	0.00225379	0.001984	1	0
TGFBR3	7049	broad.mit.edu	37	1	92178031	92178031	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:92178031C>T	uc001doh.2	-	13	2401	c.1935G>A	c.(1933-1935)TCG>TCA	p.S645S	TGFBR3_uc009wde.2_Intron|TGFBR3_uc010osy.1_Silent_p.S603S|TGFBR3_uc001doi.2_Silent_p.S644S|TGFBR3_uc001doj.2_Silent_p.S644S	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	645	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		TATCAGGGTTCGAATATGGAG	0.378													14	19					0	0	0.016723	0	0
EVI5	7813	broad.mit.edu	37	1	93170289	93170289	+	Silent	SNP	C	T	T	rs61735642		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:93170289C>T	uc001dox.2	-	3	304	c.294G>A	c.(292-294)ACG>ACA	p.T98T	EVI5_uc010otf.1_Silent_p.T98T	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	98	Interaction with alpha-tubulin, gamma- tubulin, BIRC5 and FBXO5.|Ser-rich.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		ACTTACTATCCGTTTCTAACA	0.363													9	19					0	0	0.008291	0	0
RPL5	6125	broad.mit.edu	37	1	93303031	93303031	+	Silent	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:93303031T>G	uc001doz.2	+	6	624	c.546T>G	c.(544-546)GGT>GGG	p.G182G	FAM69A_uc001dpc.2_Intron|RPL5_uc001dpa.2_RNA|RPL5_uc001dpb.2_Silent_p.G132G|RPL5_uc001dpd.2_5'UTR	NM_000969	NP_000960	P46777	RL5_HUMAN	ribosomal protein L5	182					endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	5S rRNA binding|protein binding|structural constituent of ribosome				0		all_lung(203;0.00265)|Lung NSC(277;0.0056)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000305)|all cancers(265;0.000343)|Epithelial(280;0.0927)		GATTCCCTGGTTATGATTCTG	0.348													6	23					0	0	0.001984	0	0
ABCA4	24	broad.mit.edu	37	1	94502345	94502345	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:94502345C>T	uc001dqh.2	-	26	3918	c.3814_splice	c.e26-1	p.I1272_splice		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4						phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCAGAAAAATCTGTCAAGAAG	0.428													26	50					0	0	0.006320	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94640176	94640176	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:94640176C>T	uc001dqj.3	-	23	3404	c.3035G>A	c.(3034-3036)AGG>AAG	p.R1012K	ARHGAP29_uc009wdq.1_RNA	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1012					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		AATCTTGGTCCTTGGAGTATG	0.403													28	38					0	0	0.006320	0	0
DPYD	1806	broad.mit.edu	37	1	98060702	98060702	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:98060702C>T	uc001drv.2	-	9	1008	c.871G>A	c.(871-873)GAT>AAT	p.D291N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	291					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AAGATGGCATCTTTATTGGGT	0.373													25	30					0	0	0.003954	0	0
KCNA10	3744	broad.mit.edu	37	1	111060402	111060402	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:111060402G>A	uc001dzt.1	-	1	1396	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	336						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		GGATGGCCAGGGACATGTTCT	0.542													31	25					0	0	0.012213	0	0
KCNA10	3744	broad.mit.edu	37	1	111061409	111061409	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:111061409T>A	uc001dzt.1	-	1	389	c.1A>T	c.(1-3)ATG>TTG	p.M1L		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	1						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CACACATCCATTCTAGGGGAG	0.473													3	3					0	0	0.004672	0	0
OVGP1	5016	broad.mit.edu	37	1	111963999	111963999	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:111963999G>A	uc001eba.2	-	8	858	c.802C>T	c.(802-804)CGC>TGC	p.R268C	OVGP1_uc001eaz.2_Missense_Mutation_p.R230C|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	268					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TTGAGGAGGCGAAAGGTACGT	0.502													40	18					0	0	0.008740	0	0
NRAS	4893	broad.mit.edu	37	1	115258718	115258718	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:115258718G>T	uc009wgu.2	-	2	318	c.64C>A	c.(64-66)CAG>AAG	p.Q22K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	22					activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity			haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGATTAGCTGGATTGTCAGT	0.498		50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			29	25					1.26612e-14	1.45432e-14	0.015359	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144922189	144922189	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:144922189G>A	uc001elw.3	-	8	1270	c.979C>T	c.(979-981)CAC>TAC	p.H327Y	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H393Y|PDE4DIP_uc001emc.1_Missense_Mutation_p.H327Y|PDE4DIP_uc001emd.1_Missense_Mutation_p.H327Y|PDE4DIP_uc001emb.1_Missense_Mutation_p.H490Y|PDE4DIP_uc001eme.1_5'Flank|PDE4DIP_uc001emf.1_Missense_Mutation_p.H114Y	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	327					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCACATACGTGAAGTTGTCCA	0.443			T	PDGFRB	MPD								6	19					0	0	0.001168	0	0
LIX1L	128077	broad.mit.edu	37	1	145498555	145498555	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:145498555C>T	uc001enr.2	+	6	865	c.791C>T	c.(790-792)TCG>TTG	p.S264L	NBPF10_uc001emp.3_Intron|LIX1L_uc009wiu.1_5'Flank	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	264										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCTCATTATTCGCACCGGGCC	0.537													16	62					0	0	0.004990	0	0
PIAS3	10401	broad.mit.edu	37	1	145578693	145578693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:145578693C>T	uc001eoc.1	+	3	590	c.499C>T	c.(499-501)CAG>TAG	p.Q167*	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Nonsense_Mutation_p.Q158*|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	167	PINIT.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CCTCACACCCCAGCAAGTGCA	0.348													58	36					0	0	0.014410	0	0
SETDB1	9869	broad.mit.edu	37	1	150923356	150923356	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:150923356G>A	uc001evu.2	+	13	2193	c.2003G>A	c.(2002-2004)CGA>CAA	p.R668Q	SETDB1_uc009wmf.2_Missense_Mutation_p.R669Q|SETDB1_uc001evv.2_Missense_Mutation_p.R668Q|SETDB1_uc009wmg.1_Missense_Mutation_p.R668Q	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	668					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTTGTGGACCGAAAGTTTCAG	0.443													17	53					0	0	0.006122	0	0
SETDB1	9869	broad.mit.edu	37	1	150933212	150933212	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:150933212A>G	uc001evu.2	+	16	2864	c.2674A>G	c.(2674-2676)AAC>GAC	p.N892D	SETDB1_uc001evv.2_Missense_Mutation_p.N892D|SETDB1_uc009wmg.1_Missense_Mutation_p.N892D	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	892	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGAAGATGGCAACAGCGGTAC	0.498													39	33					0	0	0.009718	0	0
ANXA9	8416	broad.mit.edu	37	1	150956527	150956527	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:150956527C>T	uc001ewa.2	+	5	719	c.249C>T	c.(247-249)TTC>TTT	p.F83F		NM_003568	NP_003559	O76027	ANXA9_HUMAN	annexin A9	83	Annexin 1.				cell-cell adhesion	cell surface|cytosol	acetylcholine receptor activity|calcium ion binding|calcium-dependent phospholipid binding|phosphatidylserine binding|protein homodimerization activity				0	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CACGAAACTTCCAGGAGCGCA	0.607													7	24					0	0	0.001984	0	0
GABPB2	126626	broad.mit.edu	37	1	151070339	151070339	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:151070339G>T	uc001ewr.2	+	5	814	c.483G>T	c.(481-483)CAG>CAT	p.Q161H	GABPB2_uc010pcp.1_Missense_Mutation_p.Q177H|GABPB2_uc001ews.2_Missense_Mutation_p.Q121H|GABPB2_uc001ewt.2_Missense_Mutation_p.Q60H	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	161	ANK 5.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		AAGCAATGCAGAATCAGGTGA	0.353													19	35					2.32416e-17	2.67622e-17	0.014323	1	0
SELENBP1	8991	broad.mit.edu	37	1	151337173	151337173	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:151337173G>A	uc001exx.2	-	12	1312	c.1265C>T	c.(1264-1266)TCT>TTT	p.S422F	SELENBP1_uc010pcy.1_Missense_Mutation_p.S464F|SELENBP1_uc001exy.2_Missense_Mutation_p.S319F|SELENBP1_uc001exz.2_Missense_Mutation_p.S319F|SELENBP1_uc010pcz.1_Missense_Mutation_p.S360F|SELENBP1_uc009wms.2_Missense_Mutation_p.S258F|SELENBP1_uc009wmt.2_Missense_Mutation_p.S319F|SELENBP1_uc001eya.2_Missense_Mutation_p.S358F|SELENBP1_uc009wmu.2_3'UTR	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	422					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CAGCATCACAGAGCCTTCCCT	0.557													29	87					0	0	0.007291	0	0
HRNR	388697	broad.mit.edu	37	1	152188229	152188229	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152188229C>T	uc001ezt.1	-	3	5952	c.5876G>A	c.(5875-5877)GGG>GAG	p.G1959E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1959	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAAGACTGCCCAGAACCAGA	0.617													53	489					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152281696	152281696	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152281696G>A	uc001ezu.1	-	3	5702	c.5666C>T	c.(5665-5667)TCC>TTC	p.S1889F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1889	Ser-rich.|Filaggrin 11.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCCGAGAGGAAGCTTCATG	0.577									Ichthyosis				91	225					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152284360	152284360	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152284360C>T	uc001ezu.1	-	3	3038	c.3002G>A	c.(3001-3003)AGC>AAC	p.S1001N	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1001	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCTGGAGCTGTCTGCAGA	0.562									Ichthyosis				93	268					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152326703	152326703	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152326703C>T	uc001ezw.3	-	3	3632	c.3559G>A	c.(3559-3561)GAC>AAC	p.D1187N	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1187	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGAAATTGTCTGAGCCAGAC	0.498													18	77					0	0	0.006122	0	0
FLG2	388698	broad.mit.edu	37	1	152328733	152328733	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152328733G>A	uc001ezw.3	-	3	1602	c.1529C>T	c.(1528-1530)TCT>TTT	p.S510F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	510	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGAGACAGACCCATGCTG	0.517													62	152					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152331324	152331324	+	Missense_Mutation	SNP	C	T	T	rs145399495		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152331324C>T	uc001ezw.3	-	2	110	c.37G>A	c.(37-39)GAT>AAT	p.D13N	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	13	S-100-like (By similarity).|EF-hand 1.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGAAAACATCAATTACGGTG	0.408													15	56					0	0	0.004990	0	0
LCE1D	353134	broad.mit.edu	37	1	152770349	152770349	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:152770349C>T	uc009wnp.2	+	2	122	c.79C>T	c.(79-81)CCT>TCT	p.P27S		NM_178352	NP_848129	Q5T752	LCE1D_HUMAN	late cornified envelope 1D	27	Cys-rich.				cellular response to calcium ion|keratinization	cornified envelope|perinuclear region of cytoplasm					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gtgcCCCGCCCCTAAATGTCC	0.542													25	3					0	0	0.018920	0	0
SPRR2B	6701	broad.mit.edu	37	1	153043153	153043153	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:153043153G>A	uc001fbg.2	-	2	226	c.163C>T	c.(163-165)CCT>TCT	p.P55S	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001017418	NP_001017418	P35325	SPR2B_HUMAN	small proline-rich protein 2B	55					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCACAGGAGGATATTTCTGC	0.557													46	108					0	0	0.014410	0	0
SHE	126669	broad.mit.edu	37	1	154459014	154459014	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:154459014C>T	uc001ffb.2	-	4	1257	c.1170G>A	c.(1168-1170)CTG>CTA	p.L390L	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	390										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GCTGCTTCTCCAGGGGCAGGC	0.572													11	82					0	0	0.013537	0	0
KCNN3	3782	broad.mit.edu	37	1	154698442	154698442	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:154698442C>T	uc001ffp.2	-	5	1965	c.1651G>A	c.(1651-1653)GCG>ACG	p.A551T	KCNN3_uc001ffo.2_Missense_Mutation_p.A246T	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	556						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TGCTTCTCCGCTTTGGTGAGT	0.567													17	44					0	0	0.008871	0	0
BCAN	63827	broad.mit.edu	37	1	156617414	156617415	+	Missense_Mutation	DNP	CC	GA	GA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:156617414_156617415CC>GA	uc001fpp.2	+	4	917_918	c.581_582CC>GA	c.(580-582)GCC>GGA	p.A194G	BCAN_uc001fpo.2_Missense_Mutation_p.A194G	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	194	Link 1.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CAGCTCTATGCCGCCTACCTTG	0.629													44	89					0	0	0.004672	0	0
NES	10763	broad.mit.edu	37	1	156640515	156640515	+	Silent	SNP	G	A	A	rs143618500		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:156640515G>A	uc001fpq.2	-	4	3598	c.3465C>T	c.(3463-3465)TCC>TCT	p.S1155S		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1155	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CAGGCAGCTCGGAGAACTCTG	0.632													20	44					0	0	0.008871	0	0
C1orf66	51093	broad.mit.edu	37	1	156703864	156703864	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:156703864C>T	uc001fpu.2	+	6	1334	c.700C>T	c.(700-702)CTG>TTG	p.L234L	C1orf66_uc001fpv.2_Intron	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	234						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCCCACAGCCCTGTGTGAGGA	0.607													19	62					0	0	0.008871	0	0
INSRR	3645	broad.mit.edu	37	1	156812223	156812223	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:156812223C>T	uc010pht.1	-	18	3458	c.3204G>A	c.(3202-3204)AAG>AAA	p.K1068K	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1068	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GAAGATGGCTCTTGAGGTCCC	0.597													23	61					0	0	0.018920	0	0
INSRR	3645	broad.mit.edu	37	1	156814327	156814327	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:156814327G>A	uc010pht.1	-	14	2918	c.2664C>T	c.(2662-2664)GCC>GCT	p.A888A	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	888	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCTAACCCTGGCAGAGTAGT	0.572													16	32					0	0	0.004007	0	0
SPTA1	6708	broad.mit.edu	37	1	158655074	158655074	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:158655074C>T	uc001fst.1	-	2	287	c.88G>A	c.(88-90)GAA>AAA	p.E30K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	30	Spectrin 1.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTCAACACTTCCTGACGCCTC	0.348													35	109					0	0	0.009718	0	0
CADM3	57863	broad.mit.edu	37	1	159162383	159162383	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:159162383G>A	uc001ftl.2	+	3	387	c.245G>A	c.(244-246)CGA>CAA	p.R82Q	CADM3_uc009wsx.1_Missense_Mutation_p.R116Q|CADM3_uc009wsy.1_Missense_Mutation_p.R82Q|CADM3_uc001ftk.2_Missense_Mutation_p.R116Q	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	82	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CGAGATAATCGAATTCAGCTG	0.512													16	62					0	0	0.006122	0	0
CADM3	57863	broad.mit.edu	37	1	159163717	159163717	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:159163717C>T	uc001ftl.2	+	5	720	c.578C>T	c.(577-579)TCG>TTG	p.S193L	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.S227L	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	193	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					GTCAGCAGCTCGGTGACATTC	0.522													8	30					0	0	0.003080	0	0
OR10J3	441911	broad.mit.edu	37	1	159284281	159284281	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:159284281G>A	uc010piu.1	-	1	169	c.169C>T	c.(169-171)CAC>TAC	p.H57Y		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					ATGGGGGTGTGAAGATGATGG	0.458													28	89					0	0	0.009535	0	0
CCDC19	25790	broad.mit.edu	37	1	159858257	159858257	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:159858257G>A	uc001fui.2	-	4	320	c.302C>T	c.(301-303)TCC>TTC	p.S101F	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.S16F|CCDC19_uc001ful.2_Missense_Mutation_p.S16F|CCDC19_uc009wtc.1_Missense_Mutation_p.S101F	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	101						mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GATGATTAGGGACTCCCCGGA	0.537													12	50					0	0	0.013537	0	0
KCNJ10	3766	broad.mit.edu	37	1	160012188	160012189	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:160012188_160012189GG>TT	uc001fuw.1	-	2	284_285	c.134_135CC>AA	c.(133-135)GCC>GAA	p.A45E		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	45	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGCGCTTGTCGGCAATGTGCTC	0.554													43	98					0	0	0.004672	0	0
ATP1A4	480	broad.mit.edu	37	1	160136852	160136852	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:160136852C>T	uc001fve.3	+	9	1820	c.1341C>T	c.(1339-1341)ATC>ATT	p.I447I	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_5'UTR	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	447	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATCAGGAGATCCTGCCCATTG	0.527													16	52					0	0	0.004990	0	0
DUSP12	11266	broad.mit.edu	37	1	161719773	161719773	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:161719773C>T	uc001gbo.2	+	1	193	c.182C>T	c.(181-183)TCG>TTG	p.S61L	DUSP12_uc001gbp.2_5'UTR	NM_007240	NP_009171	Q9UNI6	DUS12_HUMAN	dual specificity phosphatase 12	61					positive regulation of glucokinase activity	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity|zinc ion binding			breast(1)	1	all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00634)			ACAGTGGACTCGGAGGAGCCC	0.647													10	41					0	0	0.006214	0	0
ATF6	22926	broad.mit.edu	37	1	161761242	161761242	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:161761242C>T	uc001gbr.2	+	5	466	c.399C>T	c.(397-399)TCC>TCT	p.S133S	ATF6_uc001gbq.1_Silent_p.S133S	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	133	Cytoplasmic (Potential).|Transcription activation.				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			CTCCCCTTTCCTTATATGGTG	0.393													15	44					0	0	0.003163	0	0
DUSP27	92235	broad.mit.edu	37	1	167096042	167096042	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:167096042G>A	uc001geb.1	+	5	1674	c.1674G>A	c.(1672-1674)AAG>AAA	p.K558K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	558					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GATTTCACAAGAAAGACTTGG	0.552													25	45					0	0	0.018920	0	0
DUSP27	92235	broad.mit.edu	37	1	167096701	167096701	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:167096701C>T	uc001geb.1	+	5	2333	c.2333C>T	c.(2332-2334)TCC>TTC	p.S778F		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	778					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGCAGCTCCTCCTTGGGTGGC	0.592													17	30					0	0	0.006122	0	0
ADCY10	55811	broad.mit.edu	37	1	167779026	167779026	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:167779026C>T	uc001ger.2	-	33	5020	c.4722G>A	c.(4720-4722)ACG>ACA	p.T1574T	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.T1482T|ADCY10_uc010plj.1_Silent_p.T1421T	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1574					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						GACTCAAGATCGTCTGAAGCC	0.393													15	47					0	0	0.004990	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446428	169446429	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:169446428_169446429GG>AA	uc001gge.3	-	2	975_976	c.771_772CC>TT	c.(769-774)ATCCCT>ATTTCT	p.P258S	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	258	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					ATATTTAGAGGGATTTTTGACT	0.485													16	98					0	0	0.004672	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446466	169446466	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:169446466T>C	uc001gge.3	-	2	938	c.734A>G	c.(733-735)AAC>AGC	p.N245S	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	245	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					AGGAAGGTGGTTAGAAGCTGG	0.478													5	100					0	0	0.003080	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446468	169446468	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:169446468A>G	uc001gge.3	-	2	936	c.732T>C	c.(730-732)TCT>TCC	p.S244S	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	244	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					GAAGGTGGTTAGAAGCTGGGG	0.483													5	101					0	0	0.003080	0	0
SELP	6403	broad.mit.edu	37	1	169580879	169580879	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:169580879C>T	uc001ggi.3	-	7	1063	c.998G>A	c.(997-999)GGA>GAA	p.G333E	SELP_uc001ggh.2_Missense_Mutation_p.G168E|SELP_uc009wvr.2_Missense_Mutation_p.G333E	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	333	Sushi 3.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GTCCATGGTTCCTTCACTGGG	0.517													57	58					0	0	0.014410	0	0
SELE	6401	broad.mit.edu	37	1	169697230	169697230	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:169697230C>T	uc001ggm.3	-	8	1405	c.1248G>A	c.(1246-1248)GGG>GGA	p.G416G	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	416	Sushi 4.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGTCCCACTCCCCTGTGGGGC	0.458													31	102					0	0	0.008361	0	0
RC3H1	149041	broad.mit.edu	37	1	173952757	173952757	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:173952757G>C	uc001gju.3	-	3	478	c.391C>G	c.(391-393)CGC>GGC	p.R131G	RC3H1_uc010pms.1_Missense_Mutation_p.R131G|RC3H1_uc001gjv.2_Missense_Mutation_p.R131G|RC3H1_uc010pmt.1_Missense_Mutation_p.R131G	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	131					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TGCATTGGGCGACTCAGAACA	0.458													33	75					0	0	0.005524	0	0
TNN	63923	broad.mit.edu	37	1	175066613	175066613	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:175066613C>T	uc001gkl.1	+	8	1762	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	TNN_uc010pmx.1_Intron	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	550	Fibronectin type-III 4.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCACCATCTCCTGGGACCCG	0.537													18	29					0	0	0.007413	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525526	176525526	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:176525526A>G	uc001gkz.2	+	2	1232	c.68A>G	c.(67-69)AAC>AGC	p.N23S	PAPPA2_uc001gky.1_Missense_Mutation_p.N23S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	23					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTTCTGCCAACTCTGAGCTG	0.512													27	81					0	0	0.004656	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734840	176734840	+	Missense_Mutation	SNP	C	T	T	rs144502400	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:176734840C>T	uc001gkz.2	+	15	5354	c.4190C>T	c.(4189-4191)CCG>CTG	p.P1397L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1397	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GACAGCTGTCCGTCATTGCTG	0.493													45	123					0	0	0.014410	0	0
FAM5B	57795	broad.mit.edu	37	1	177242626	177242626	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:177242626C>T	uc001glf.2	+	5	984	c.672C>T	c.(670-672)GTC>GTT	p.V224V	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Silent_p.V119V	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	224						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TTCTCTAGGTCACCGAGACCA	0.502													6	38					0	0	0.001168	0	0
RALGPS2	55103	broad.mit.edu	37	1	178777196	178777196	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:178777196G>A	uc001glz.2	+	5	568	c.230G>A	c.(229-231)GGA>GAA	p.G77E	RALGPS2_uc001gly.1_Missense_Mutation_p.G77E|RALGPS2_uc010pnb.1_Missense_Mutation_p.G77E	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	77	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						TCAAGTTGTGGATGGAATAAA	0.308													12	21					0	0	0.010729	0	0
MR1	3140	broad.mit.edu	37	1	181022797	181022797	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:181022797G>A	uc001goq.1	+	5	974	c.969G>A	c.(967-969)TGG>TGA	p.W323*	MR1_uc001gor.1_Nonsense_Mutation_p.W278*|MR1_uc001gos.1_Nonsense_Mutation_p.W231*|MR1_uc010pns.1_Intron	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	323	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						TTCTAGTCTGGAGAAGAAGGC	0.522													31	88					0	0	0.015359	0	0
HMCN1	83872	broad.mit.edu	37	1	186023034	186023034	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:186023034G>C	uc001grq.1	+	44	7007	c.6778G>C	c.(6778-6780)GAA>CAA	p.E2260Q		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2260	Ig-like C2-type 20.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TTCAATTGCTGAAAAGTCTGA	0.428													14	36					0	0	0.002450	0	0
PRG4	10216	broad.mit.edu	37	1	186269336	186269336	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:186269336T>A	uc001gru.3	+	3	241	c.190T>A	c.(190-192)TGC>AGC	p.C64S	PRG4_uc001grt.3_Intron|PRG4_uc009wyl.2_Missense_Mutation_p.C64S|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	64	SMB 1.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CAAGAGAGTCTGCACTGCGGG	0.537													33	88					0	0	0.013726	0	0
KCNT2	343450	broad.mit.edu	37	1	196227512	196227512	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:196227512G>A	uc001gtd.1	-	26	3083	c.3023C>T	c.(3022-3024)CCC>CTC	p.P1008L	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.P941L|KCNT2_uc001gtf.1_Missense_Mutation_p.P984L|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.P512L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1008	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CCGCAGCAAGGGATGGTCCGA	0.512													21	47					0	0	0.012319	0	0
CFH	3075	broad.mit.edu	37	1	196683013	196683013	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:196683013G>A	uc001gtj.3	+	10	1725	c.1485G>A	c.(1483-1485)GGG>GGA	p.G495G		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	495	Sushi 8.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTACATGTGGGAAAGATGGAT	0.333													25	24					0	0	0.007291	0	0
CFHR4	10877	broad.mit.edu	37	1	196883739	196883739	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:196883739G>A	uc001gto.2	+	4	623	c.554G>A	c.(553-555)GGA>GAA	p.G185E	CFHR4_uc009wyy.2_Missense_Mutation_p.G431E|CFHR4_uc001gtp.2_Missense_Mutation_p.G432E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	185	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						ATCAGTTATGGAAACACCACA	0.373													10	35					0	0	0.008291	0	0
CRB1	23418	broad.mit.edu	37	1	197404165	197404165	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:197404165G>A	uc001gtz.2	+	9	3307	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	CRB1_uc010poz.1_Missense_Mutation_p.E1034K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E946K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E539K|CRB1_uc001gub.1_Missense_Mutation_p.E707K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1058	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGTGGACAACGAAACACCTTT	0.443													27	56					0	0	0.007291	0	0
DENND1B	163486	broad.mit.edu	37	1	197564452	197564452	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:197564452C>T	uc001guf.3	-	14	1271	c.933G>A	c.(931-933)TTG>TTA	p.L311L	DENND1B_uc010ppe.1_Silent_p.L291L|DENND1B_uc010ppf.1_RNA|DENND1B_uc001gue.3_Silent_p.L281L	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	311						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						GTTTATTTTTCAAGGCCGAGA	0.473													41	106					0	0	0.007835	0	0
KIF14	9928	broad.mit.edu	37	1	200544813	200544813	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:200544813C>T	uc010ppk.1	-	22	3911	c.3472G>A	c.(3472-3474)GGT>AGT	p.G1158S	KIF14_uc010ppj.1_Missense_Mutation_p.G667S	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1158	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						CTGTTACTACCATTACTCTAA	0.328													10	31					0	0	0.008291	0	0
LGR6	59352	broad.mit.edu	37	1	202197125	202197125	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:202197125C>T	uc001gxu.2	+	3	346	c.346C>T	c.(346-348)CTG>TTG	p.L116L	LGR6_uc001gxv.2_Silent_p.L64L|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.L73L	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	116	LRR 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TCTCTACAGCCTGAAAATCCT	0.463													15	52					0	0	0.006122	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202318017	202318017	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:202318017A>G	uc001gya.1	+	1	182	c.38A>G	c.(37-39)GAG>GGG	p.E13G	PPP1R12B_uc001gxy.2_Missense_Mutation_p.E13G|PPP1R12B_uc009xad.1_5'UTR|PPP1R12B_uc009xae.1_Missense_Mutation_p.E13G|PPP1R12B_uc001gxz.1_Missense_Mutation_p.E13G	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	13					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			AAGCGGGCAGAGTCGGCGCGA	0.672													15	49					0	0	0.004990	0	0
OPTC	26254	broad.mit.edu	37	1	203472695	203472695	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:203472695C>T	uc001gzu.1	+	7	962	c.846C>T	c.(844-846)ACC>ACT	p.T282T		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	282	LRR 5.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			TGATAGAGACCATGCAGAGAG	0.557													19	49					0	0	0.010504	0	0
ATP2B4	493	broad.mit.edu	37	1	203689771	203689771	+	Missense_Mutation	SNP	G	A	A	rs147313187		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:203689771G>A	uc001gzw.2	+	16	3385	c.2501G>A	c.(2500-2502)CGA>CAA	p.R834Q	ATP2B4_uc001gzv.2_Missense_Mutation_p.R834Q|ATP2B4_uc009xaq.2_Missense_Mutation_p.R834Q|ATP2B4_uc001gzx.2_5'Flank|ATP2B4_uc009xar.2_5'Flank	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	834	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ATGTGGGGACGAAATGTCTAT	0.512													11	39					0	0	0.008291	0	0
GOLT1A	127845	broad.mit.edu	37	1	204172104	204172104	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:204172104C>T	uc001has.1	-	2	223	c.37G>A	c.(37-39)GGG>AGG	p.G13R	GOLT1A_uc001hat.1_Missense_Mutation_p.G13R	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	13	Helical; Name=1; (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			CCGGTGATCCCCACACCAATC	0.567													25	14					0	0	0.003954	0	0
CNTN2	6900	broad.mit.edu	37	1	205027463	205027463	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:205027463G>A	uc001hbr.2	+	4	639	c.370G>A	c.(370-372)GAG>AAG	p.E124K	CNTN2_uc001hbq.1_5'UTR|CNTN2_uc009xbi.2_5'UTR|CNTN2_uc001hbs.2_5'Flank	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	124	Ig-like C2-type 1.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TGTCAGCAGGGAGGCCATCCT	0.627													10	35					0	0	0.008291	0	0
NUAK2	81788	broad.mit.edu	37	1	205273115	205273115	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:205273115C>T	uc001hce.2	-	7	1477	c.1350G>A	c.(1348-1350)AAG>AAA	p.K450K		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	450					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GTCGGGGCTTCTTGAGAATGC	0.642													11	26					0	0	0.008291	0	0
IL10	3586	broad.mit.edu	37	1	206941988	206941988	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:206941988C>T	uc001hen.1	-	5	589	c.530G>A	c.(529-531)CGA>CAA	p.R177Q		NM_000572	NP_000563	P22301	IL10_HUMAN	interleukin 10 precursor	177					anti-apoptosis|B cell differentiation|B cell proliferation|cytoplasmic sequestering of NF-kappaB|inflammatory response|leukocyte chemotaxis|negative regulation of B cell proliferation|negative regulation of cytokine secretion involved in immune response|negative regulation of interferon-alpha biosynthetic process|negative regulation of interleukin-6 production|negative regulation of membrane protein ectodomain proteolysis|negative regulation of MHC class II biosynthetic process|negative regulation of T cell proliferation|positive regulation of B cell apoptosis|positive regulation of cytokine secretion|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|receptor biosynthetic process|regulation of isotype switching|response to glucocorticoid stimulus|type 2 immune response	extracellular space	cytokine activity|growth factor activity|interleukin-10 receptor binding				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			GTCTCAGTTTCGTATCTTCAT	0.458													12	41					0	0	0.016723	0	0
KCNH1	3756	broad.mit.edu	37	1	210970995	210970995	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:210970995G>A	uc001hib.2	-	9	1940	c.1770C>T	c.(1768-1770)CTC>CTT	p.L590L	KCNH1_uc001hic.2_Silent_p.L563L	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	590	Cytoplasmic (Potential).|cNMP.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CCAGTGCCCGGAGGCAGCCAT	0.612													21	46					0	0	0.010504	0	0
DTL	51514	broad.mit.edu	37	1	212273663	212273663	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:212273663C>T	uc009xdc.2	+	14	1645	c.1331C>T	c.(1330-1332)TCC>TTC	p.S444F	DTL_uc010ptb.1_Missense_Mutation_p.S402F|DTL_uc001hiz.3_Missense_Mutation_p.S173F	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	444					DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		TCCAATTCTTCCCCGTCATCC	0.517													29	79					0	0	0.013726	0	0
C1orf227	149643	broad.mit.edu	37	1	213009459	213009459	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:213009459C>T	uc001hjq.2	-	2	141	c.33G>A	c.(31-33)ATG>ATA	p.M11I		NM_001024601	NP_001019772	Q537H7	CA227_HUMAN	hypothetical protein LOC149643	11											0						CATGTTTTTTCATTATTTCAA	0.358													21	81					0	0	0.018920	0	0
PTPN14	5784	broad.mit.edu	37	1	214537893	214537893	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:214537893G>A	uc001hkk.1	-	18	3668	c.3397C>T	c.(3397-3399)CTT>TTT	p.L1133F		NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	1133	Tyrosine-protein phosphatase.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		AGCTCAGAAAGAATGAGCACG	0.567													13	37					0	0	0.013537	0	0
PTPN14	5784	broad.mit.edu	37	1	214556954	214556954	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:214556954G>A	uc001hkk.1	-	13	2515	c.2244C>T	c.(2242-2244)CCC>CCT	p.P748P	PTPN14_uc010pty.1_Silent_p.P649P	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	748					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		ACTCAGGCGGGGGCTTGTTGG	0.657													18	49					0	0	0.006122	0	0
USH2A	7399	broad.mit.edu	37	1	216061779	216061779	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:216061779C>T	uc001hku.1	-	41	8599	c.8212G>A	c.(8212-8214)GAT>AAT	p.D2738N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2738	Fibronectin type-III 14.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGACTGCATCGGGTTCCAGC	0.502										HNSCC(13;0.011)			13	29					0	0	0.016723	0	0
USH2A	7399	broad.mit.edu	37	1	216062314	216062315	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:216062314_216062315GG>AA	uc001hku.1	-	41	8063_8064	c.7676_7677CC>TT	c.(7675-7677)TCC>TTT	p.S2559F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2559	Fibronectin type-III 12.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAACCCCATTGGATTTTCTAGG	0.401										HNSCC(13;0.011)			11	55					0	0	0.004672	0	0
USH2A	7399	broad.mit.edu	37	1	216262377	216262377	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:216262377G>A	uc001hku.1	-	23	5250	c.4863C>T	c.(4861-4863)ATC>ATT	p.I1621I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1621	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CATCCAGAGTGATTTGGCCAA	0.353										HNSCC(13;0.011)			19	72					0	0	0.007413	0	0
MARK1	4139	broad.mit.edu	37	1	220835350	220835350	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:220835350C>T	uc001hmn.3	+	18	2827	c.2230C>T	c.(2230-2232)CAT>TAT	p.H744Y	MARK1_uc009xdw.2_Missense_Mutation_p.H745Y|MARK1_uc010pun.1_Missense_Mutation_p.H729Y|MARK1_uc001hmm.3_Missense_Mutation_p.H707Y	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	744					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TTTCTGTGTCCATGGAGACGC	0.438													19	46					0	0	0.010504	0	0
HLX	3142	broad.mit.edu	37	1	221057727	221057728	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:221057727_221057728CC>TT	uc001hmv.3	+	4	1605_1606	c.1148_1149CC>TT	c.(1147-1149)TCC>TTT	p.S383F		NM_021958	NP_068777	Q14774	HLX_HUMAN	H2.0-like homeobox	383	Ser-rich.				cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				GBM - Glioblastoma multiforme(131;0.00914)		GACTCCGAGTCCCTGGACATGG	0.639													16	29					0	0	0.004672	0	0
ENAH	55740	broad.mit.edu	37	1	225700594	225700594	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:225700594A>G	uc001hpc.1	-	8	1796	c.1343T>C	c.(1342-1344)ATG>ACG	p.M448T	ENAH_uc001hpd.1_Missense_Mutation_p.M448T|ENAH_uc001hpb.1_Missense_Mutation_p.M67T	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	448	EVH2.|EVH2 block B.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		CAGGGCACTCATTTCTTCCAT	0.438													66	61					0	0	0.014410	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227333303	227333303	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:227333303T>A	uc001hqr.2	-	8	1973	c.1030A>T	c.(1030-1032)AGT>TGT	p.S344C	CDC42BPA_uc001hqs.2_Missense_Mutation_p.S344C|CDC42BPA_uc009xes.2_Missense_Mutation_p.S344C|CDC42BPA_uc010pvs.1_Missense_Mutation_p.S344C	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	344	AGC-kinase C-terminal.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity	p.S344C(1)		lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TCAATTCCACTGAAAAATGGG	0.368													24	66					0	0	0.004656	0	0
PRSS38	339501	broad.mit.edu	37	1	228003849	228003849	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:228003849G>A	uc001hrh.2	+	2	207	c.207G>A	c.(205-207)AGG>AGA	p.R69R		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	69	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CGCCCGAGAGGAAGTGGCCGT	0.667													28	94					0	0	0.006320	0	0
OBSCN	84033	broad.mit.edu	37	1	228556533	228556533	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:228556533C>T	uc009xez.1	+	89	19922	c.19878C>T	c.(19876-19878)TCC>TCT	p.S6626S	OBSCN_uc001hsr.1_Silent_p.S1255S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6626	Protein kinase 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGTACGGCTCCCCTGAGTTCG	0.582													37	86					0	0	0.019004	0	0
NUP133	55746	broad.mit.edu	37	1	229606358	229606358	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:229606358T>C	uc001htn.2	-	15	2137	c.2045A>G	c.(2044-2046)AAC>AGC	p.N682S		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	682					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				AGGAGTCAGGTTGGATGGGAT	0.473													30	58					0	0	0.012213	0	0
NUP133	55746	broad.mit.edu	37	1	229623248	229623248	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:229623248G>A	uc001htn.2	-	10	1399	c.1307C>T	c.(1306-1308)TCT>TTT	p.S436F		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	436					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CTGGGGAAGAGAAAATTTCCC	0.403													21	72					0	0	0.010504	0	0
TTC13	79573	broad.mit.edu	37	1	231056309	231056309	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:231056309G>A	uc001huf.3	-	17	1961	c.1930C>T	c.(1930-1932)CGG>TGG	p.R644W	TTC13_uc009xfi.2_Missense_Mutation_p.R591W|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.R591W|TTC13_uc009xfk.1_Missense_Mutation_p.R534W	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	644							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		AGGGCTTCCCGAACTTCCAGC	0.373													20	73					0	0	0.004656	0	0
KIAA1383	54627	broad.mit.edu	37	1	232943069	232943069	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:232943069T>A	uc001hvh.2	+	1	2432	c.2300T>A	c.(2299-2301)ATT>AAT	p.I767N		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	625										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				GCAAATTCCATTATTCCAGAA	0.348													32	97					0	0	0.006230	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134000	233134000	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:233134000T>C	uc001hvl.2	-	32	6023	c.5788A>G	c.(5788-5790)ACA>GCA	p.T1930A	PCNXL2_uc001hvk.1_Missense_Mutation_p.T582A|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1930						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CACCCACCTGTTCTCTGTGTC	0.552													6	10					0	0	0.001984	0	0
PCNXL2	80003	broad.mit.edu	37	1	233161126	233161126	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:233161126C>T	uc001hvl.2	-	26	4606	c.4371G>A	c.(4369-4371)AGG>AGA	p.R1457R	PCNXL2_uc001hvk.1_Silent_p.R109R|PCNXL2_uc001hvm.1_Intron	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1457						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CTTCTACCTCCCTCTGCTGGC	0.552											OREG0014326	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	39					0	0	0.004990	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394726	233394726	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:233394726G>A	uc001hvl.2	-	5	1117	c.882C>T	c.(880-882)TCC>TCT	p.S294S	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	294						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GTTCCCTTATGGAGCCCCGGG	0.547													29	71					0	0	0.008361	0	0
RYR2	6262	broad.mit.edu	37	1	237754053	237754053	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:237754053G>A	uc001hyl.1	+	31	4041	c.3921G>A	c.(3919-3921)CCG>CCA	p.P1307P		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1307	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGAGCATGCCGATCGAGTGCG	0.507													59	151					0	0	0.014410	0	0
RYR2	6262	broad.mit.edu	37	1	237780706	237780706	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:237780706G>A	uc001hyl.1	+	38	5956	c.5836G>A	c.(5836-5838)GAA>AAA	p.E1946K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1946	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCGATACAACGAAGTCATGCA	0.453													34	27					0	0	0.006999	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090447	238090447	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:238090447C>T	uc010pyc.1	+	12		c.1953C>T				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						TGCTGCTGATCGAGGCCTGCC	0.577													7	26					0	0	0.001984	0	0
RGS7	6000	broad.mit.edu	37	1	240969462	240969462	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:240969462C>T	uc001hyv.2	-	15	1577	c.1247G>A	c.(1246-1248)CGA>CAA	p.R416Q	RGS7_uc010pyh.1_Missense_Mutation_p.R390Q|RGS7_uc010pyj.1_Missense_Mutation_p.R332Q|RGS7_uc001hyu.2_Missense_Mutation_p.R416Q|RGS7_uc009xgn.1_Missense_Mutation_p.R363Q|RGS7_uc001hyw.2_Missense_Mutation_p.R416Q|RGS7_uc001hyt.2_Missense_Mutation_p.R248Q	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	416	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AAATGTGTATCGTCCAGGTTC	0.453													23	60					0	0	0.004656	0	0
NLRP3	114548	broad.mit.edu	37	1	247582220	247582221	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:247582220_247582221CC>TT	uc001icr.2	+	3	262_263	c.124_125CC>TT	c.(124-126)CCG>TTG	p.P42L	NLRP3_uc001ics.2_Missense_Mutation_p.P42L|NLRP3_uc001icu.2_Missense_Mutation_p.P42L|NLRP3_uc001icw.2_Missense_Mutation_p.P42L|NLRP3_uc001icv.2_Missense_Mutation_p.P42L|NLRP3_uc010pyw.1_Missense_Mutation_p.P40L|NLRP3_uc001ict.1_Missense_Mutation_p.P40L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	42	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CATCCCCCTCCCGAGGGGTCAG	0.559													7	33					0	0	0.004672	0	0
OR2G3	81469	broad.mit.edu	37	1	247769418	247769418	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:247769418T>G	uc010pyz.1	+	1	531	c.531T>G	c.(529-531)TTT>TTG	p.F177L		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGACCATTTTATTTGCGAAG	0.448													30	58					0	0	0.015359	0	0
OR2L13	284521	broad.mit.edu	37	1	248262729	248262729	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:248262729C>A	uc001ids.2	+	3	389	c.52C>A	c.(52-54)CCC>ACC	p.P18T		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GGGTCTGCTTCCCCCAAATCA	0.373													61	59					2.19297e-23	2.52983e-23	0.014410	1	0
OR2M5	127059	broad.mit.edu	37	1	248308992	248308992	+	Silent	SNP	C	T	T	rs141891339		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:248308992C>T	uc010pze.1	+	1	543	c.543C>T	c.(541-543)TTC>TTT	p.F181F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TCTGTGACTTCCCTTCCCTAC	0.423													78	194					0	0	0.014410	0	0
OR2M4	26245	broad.mit.edu	37	1	248402602	248402602	+	Silent	SNP	G	A	A	rs113116050	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:248402602G>A	uc010pzh.1	+	1	372	c.372G>A	c.(370-372)GTG>GTA	p.V124V		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACCGCTATGTGGCTATATGTC	0.473													22	61					0	0	0.014323	0	0
OR2M7	391196	broad.mit.edu	37	1	248486965	248486965	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr1:248486965C>T	uc010pzk.1	-	1	906	c.906G>A	c.(904-906)ATG>ATA	p.M302I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTAAGATTTTCATTAATGCTC	0.403													11	28					0	0	0.013537	0	0
AKR1C4	1109	broad.mit.edu	37	10	5254636	5254636	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:5254636G>A	uc001ihw.2	+	6	661	c.628G>A	c.(628-630)GAC>AAC	p.D210N		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	210					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	CAAGTCAAAAGACATTGTTCT	0.388													5	28					0	0	0.014758	0	0
FBXO18	84893	broad.mit.edu	37	10	5960373	5960373	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:5960373T>A	uc001iis.2	+	13	2127	c.2032T>A	c.(2032-2034)TAT>AAT	p.Y678N	FBXO18_uc001iir.2_Missense_Mutation_p.Y604N|FBXO18_uc009xig.2_Missense_Mutation_p.Y604N|FBXO18_uc001iit.2_Missense_Mutation_p.Y729N	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	678					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						CCAGCAGATCTATACCTTCCG	0.527													36	48					0	0	0.013726	0	0
CAMK1D	57118	broad.mit.edu	37	10	12866523	12866523	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:12866523G>A	uc001ilo.2	+	9	1128	c.893G>A	c.(892-894)CGG>CAG	p.R298Q	CAMK1D_uc001iln.2_Missense_Mutation_p.R298Q	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	298	Autoinhibitory domain (By similarity).					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		GCCCAGATCCGGAAAAACTTT	0.502													45	49					0	0	0.014410	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14965057	14965057	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:14965057G>A	uc001inn.2	-	12	1069	c.984C>T	c.(982-984)TTC>TTT	p.F328F	DCLRE1C_uc010qbx.1_Silent_p.F328F|DCLRE1C_uc001ink.2_5'UTR|DCLRE1C_uc001inl.2_Silent_p.F208F|DCLRE1C_uc009xji.2_Silent_p.F213F|DCLRE1C_uc001inm.2_Silent_p.F208F|DCLRE1C_uc001ino.2_Silent_p.F213F|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Silent_p.F208F|DCLRE1C_uc001inq.2_Silent_p.F208F|DCLRE1C_uc001inr.2_Silent_p.F213F|DCLRE1C_uc009xjj.1_RNA	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	328					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						GGTAGCTCAAGAAATCTTTAA	0.418								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					10	20					0	0	0.016723	0	0
MEIG1	644890	broad.mit.edu	37	10	15008576	15008576	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:15008576G>A	uc009xjk.1	+	2	257	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_001080836	NP_001074305	Q5JSS6	MEIG1_HUMAN	meiosis expressed gene 1 homolog	37											0						GGATGAAACCGAATATAGACA	0.338													5	22					0	0	0.001168	0	0
NSUN6	221078	broad.mit.edu	37	10	18840781	18840781	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:18840781G>A	uc010qcp.1	-	9	1460	c.1042C>T	c.(1042-1044)CAG>TAG	p.Q348*		NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	348							methyltransferase activity|RNA binding			ovary(2)	2						TGTAATGGCTGATATGATGCC	0.408													33	19					0	0	0.004878	0	0
NEBL	10529	broad.mit.edu	37	10	21169768	21169768	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:21169768G>A	uc001iqi.2	-	5	832	c.435C>T	c.(433-435)CCC>CCT	p.P145P	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	145	Nebulin 4.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TAACCTCAGGGGGCTCCTTCA	0.403													25	56					0	0	0.007291	0	0
MLLT10	8028	broad.mit.edu	37	10	21903788	21903788	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:21903788G>A	uc001iqs.2	+	7	886	c.538G>A	c.(538-540)GAA>AAA	p.E180K	MLLT10_uc001iqt.2_Missense_Mutation_p.E180K|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.E180K|MLLT10_uc001ira.2_5'Flank|MLLT10_uc001iqz.2_5'UTR	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	180	Interaction with FSTL3.|Self-association.|PHD-type 2.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						GCTTTGTGAAGAAGAAGGTAA	0.323			T	MLL|PICALM|CDK6	AL								9	24					0	0	0.010729	0	0
KIAA1217	56243	broad.mit.edu	37	10	24784110	24784110	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:24784110C>T	uc001iru.3	+	8	2222	c.1819C>T	c.(1819-1821)CAC>TAC	p.H607Y	KIAA1217_uc001irs.2_Missense_Mutation_p.H527Y|KIAA1217_uc001irt.3_Missense_Mutation_p.H572Y|KIAA1217_uc010qcy.1_Missense_Mutation_p.H572Y|KIAA1217_uc010qcz.1_Missense_Mutation_p.H572Y|KIAA1217_uc001irv.1_Missense_Mutation_p.H422Y|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.H290Y|KIAA1217_uc001irz.2_Missense_Mutation_p.H290Y|KIAA1217_uc001irx.2_Missense_Mutation_p.H290Y|KIAA1217_uc001iry.2_Missense_Mutation_p.H290Y	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	607					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CAACAGGAACCACACAGATAG	0.423													7	13					0	0	0.004482	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24909488	24909488	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:24909488G>A	uc001isb.2	-	9	1823	c.1336C>T	c.(1336-1338)CGA>TGA	p.R446*	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Nonsense_Mutation_p.R446*|ARHGAP21_uc010qdc.1_Nonsense_Mutation_p.R281*|ARHGAP21_uc001isc.1_Nonsense_Mutation_p.R436*	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	445					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						TGGGGCACTCGATCATGAGAG	0.493													8	13					0	0	0.003163	0	0
APBB1IP	54518	broad.mit.edu	37	10	26800768	26800768	+	Silent	SNP	C	T	T	rs149483004	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:26800768C>T	uc001iss.2	+	7	945	c.624C>T	c.(622-624)TTC>TTT	p.F208F	APBB1IP_uc009xks.1_Silent_p.F208F	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	208	Ras-associating.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						ACAACCTTTTCGAGAAAACTC	0.483													22	30					0	0	0.018920	0	0
APBB1IP	54518	broad.mit.edu	37	10	26800816	26800816	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:26800816C>T	uc001iss.2	+	7	993	c.672C>T	c.(670-672)ATC>ATT	p.I224I	APBB1IP_uc009xks.1_Silent_p.I224I	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	224	Ras-associating.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium		p.I224V(1)		lung(4)|skin(2)|central_nervous_system(1)	7						TTTATGAAATCTACCCGGAAC	0.458													16	25					0	0	0.004007	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316293	30316293	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:30316293C>T	uc001iux.2	-	2	2843	c.2784G>A	c.(2782-2784)TGG>TGA	p.W928*	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Nonsense_Mutation_p.W790*|KIAA1462_uc009xle.1_Nonsense_Mutation_p.W928*	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	928										ovary(4)	4						GGGATGGAGGCCAGGCACGTG	0.617													14	24					0	0	0.002450	0	0
ZEB1	6935	broad.mit.edu	37	10	31809203	31809203	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:31809203C>T	uc001ivs.3	+	7	1003	c.940C>T	c.(940-942)CCG>TCG	p.P314S	ZEB1_uc001ivr.3_Missense_Mutation_p.P96S|ZEB1_uc010qee.1_Missense_Mutation_p.P96S|ZEB1_uc010qef.1_Missense_Mutation_p.P96S|ZEB1_uc009xlj.1_Missense_Mutation_p.P240S|ZEB1_uc010qeg.1_Missense_Mutation_p.P173S|ZEB1_uc009xlk.1_Missense_Mutation_p.P96S|ZEB1_uc001ivt.3_Missense_Mutation_p.P96S|ZEB1_uc001ivu.3_Missense_Mutation_p.P315S|ZEB1_uc001ivv.3_Missense_Mutation_p.P294S|ZEB1_uc010qeh.1_Missense_Mutation_p.P247S|ZEB1_uc009xlo.1_Missense_Mutation_p.P297S|ZEB1_uc009xlp.2_Missense_Mutation_p.P298S	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	314					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GTGTTCTTCACCGTCTCTTTC	0.438													23	18					0	0	0.018920	0	0
KIF5B	3799	broad.mit.edu	37	10	32327101	32327101	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:32327101G>A	uc001iwe.3	-	6	958	c.488C>T	c.(487-489)CCC>CTC	p.P163L		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	163	Kinesin-motor.				stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				CTTTACATAGGGAACTCGGTT	0.254													14	20					0	0	0.016723	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508427	37508427	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:37508427C>T	uc001iza.1	+	34	3718	c.3619C>T	c.(3619-3621)CTA>TTA	p.L1207L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1263						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATCCAAAAGCCTAAAAATTAA	0.353													8	9					0	0	0.004482	0	0
ZNF25	219749	broad.mit.edu	37	10	38245986	38245986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:38245986C>T	uc001ize.1	-	4	305	c.200G>A	c.(199-201)TGG>TAG	p.W67*	ZNF25_uc001izf.1_Nonsense_Mutation_p.W31*	NM_145011	NP_659448	P17030	ZNF25_HUMAN	zinc finger protein 25	67	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|central_nervous_system(1)	4		all_neural(218;0.0218)|Breast(68;0.0389)|Ovarian(717;0.0443)|Renal(717;0.157)				TTCTAATATCCATGGCTCTTT	0.398													10	36					0	0	0.006214	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089567	43089568	+	Missense_Mutation	DNP	AA	GT	GT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:43089567_43089568AA>GT	uc001jaf.1	-	5	945_946	c.830_831TT>AC	c.(829-831)TTT>TAC	p.F277Y	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.F165Y|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	277						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CACAATCACTAAATTCATAGTG	0.381													11	32					0	0	0.004672	0	0
RASSF4	83937	broad.mit.edu	37	10	45485153	45485153	+	Silent	SNP	C	T	T	rs11540204	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:45485153C>T	uc001jbo.2	+	8	803	c.669C>T	c.(667-669)ATC>ATT	p.I223I	RASSF4_uc001jbp.2_Silent_p.I254I|RASSF4_uc009xmn.2_Silent_p.I153I|RASSF4_uc001jbq.2_Silent_p.I120I|RASSF4_uc001jbt.2_Silent_p.I180I	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	223	Ras-associating.				cell cycle|signal transduction		protein binding			large_intestine(1)	1						CACTCTACATCGTTCACGAGT	0.557													17	24					0	0	0.007413	0	0
LOC100133308	100133308	broad.mit.edu	37	10	45611473	45611473	+	RNA	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:45611473A>G	uc001jbz.2	-	4		c.277T>C			LOC100133308_uc009xmq.1_RNA					Homo sapiens cDNA FLJ32851 fis, clone TESTI2003432.												0						GAGCACTTCCAAATTCTTCAG	0.463													12	8					0	0	0.013537	0	0
OGDHL	55753	broad.mit.edu	37	10	50946014	50946014	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:50946014G>A	uc001jie.2	-	19	2638	c.2496C>T	c.(2494-2496)ATC>ATT	p.I832I	OGDHL_uc009xog.2_Silent_p.I859I|OGDHL_uc010qgt.1_Silent_p.I775I|OGDHL_uc010qgu.1_Silent_p.I623I	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	832					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGGGCAGCAGGATCTGCCGGC	0.642													14	78					0	0	0.006122	0	0
OGDHL	55753	broad.mit.edu	37	10	50953880	50953880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:50953880C>T	uc001jie.2	-	11	1582	c.1440G>A	c.(1438-1440)TGG>TGA	p.W480*	OGDHL_uc009xog.2_Nonsense_Mutation_p.W507*|OGDHL_uc010qgt.1_Nonsense_Mutation_p.W423*|OGDHL_uc010qgu.1_Nonsense_Mutation_p.W271*|OGDHL_uc009xoh.2_Nonsense_Mutation_p.W271*	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	480					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AAGTGTTTCTCCATTCGGCTG	0.587													9	27					0	0	0.004482	0	0
A1CF	29974	broad.mit.edu	37	10	52566640	52566640	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:52566640C>T	uc001jjj.2	-	13	1822	c.1634G>A	c.(1633-1635)GGA>GAA	p.G545E	A1CF_uc010qhn.1_Missense_Mutation_p.G545E|A1CF_uc001jji.2_Missense_Mutation_p.G537E|A1CF_uc001jjh.2_Missense_Mutation_p.G545E|A1CF_uc010qho.1_Missense_Mutation_p.G553E|A1CF_uc009xov.2_Missense_Mutation_p.G537E	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	545					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GACAGCATATCCTGGAGGAAG	0.438													8	35					0	0	0.003080	0	0
A1CF	29974	broad.mit.edu	37	10	52603792	52603792	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:52603792G>A	uc001jjj.2	-	4	378	c.190C>T	c.(190-192)CCC>TCC	p.P64S	A1CF_uc010qhn.1_Missense_Mutation_p.P72S|A1CF_uc001jji.2_Missense_Mutation_p.P64S|A1CF_uc001jjh.2_Missense_Mutation_p.P72S|A1CF_uc010qho.1_Missense_Mutation_p.P72S|A1CF_uc009xov.2_Missense_Mutation_p.P64S|A1CF_uc001jjk.1_Missense_Mutation_p.P64S	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	64	RRM 1.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						AGGTCTCGGGGAAGTTTTCCA	0.398													17	47					0	0	0.004007	0	0
PRKG1	5592	broad.mit.edu	37	10	54040658	54040658	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:54040658C>T	uc001jjm.2	+	13	1662	c.1468C>T	c.(1468-1470)CTC>TTC	p.L490F	PRKG1_uc001jjo.2_Missense_Mutation_p.L505F|PRKG1_uc009xow.1_Missense_Mutation_p.L208F|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	490	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		GCCAGAAAATCTCATCCTAGA	0.393													25	22					0	0	0.005443	0	0
MBL2	4153	broad.mit.edu	37	10	54530430	54530430	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:54530430C>T	uc001jjt.2	-	2	369	c.304G>A	c.(304-306)GAT>AAT	p.D102N		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	102					acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						GGGTCCTTACCCGGACTTTTT	0.557													12	52					0	0	0.013537	0	0
FAM13C	220965	broad.mit.edu	37	10	61023882	61023882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61023882C>T	uc001jkn.2	-	10	1121	c.987G>A	c.(985-987)TGG>TGA	p.W329*	FAM13C_uc001jko.2_Intron|FAM13C_uc010qid.1_Nonsense_Mutation_p.W246*|FAM13C_uc010qie.1_Nonsense_Mutation_p.W246*|FAM13C_uc010qif.1_Nonsense_Mutation_p.W351*|FAM13C_uc001jkp.2_Nonsense_Mutation_p.W246*	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	329										ovary(2)	2						AATCATTCATCCATTTCAGGA	0.303													20	26					0	0	0.014323	0	0
FAM13C	220965	broad.mit.edu	37	10	61029691	61029691	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61029691G>A	uc001jkn.2	-	8	905	c.771C>T	c.(769-771)GCC>GCT	p.A257A	FAM13C_uc001jko.2_Silent_p.A257A|FAM13C_uc010qid.1_Silent_p.A174A|FAM13C_uc010qie.1_Silent_p.A174A|FAM13C_uc010qif.1_Silent_p.A279A|FAM13C_uc001jkp.2_Silent_p.A174A	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	257										ovary(2)	2						GTGGAGATGGGGCTGACTCGG	0.443													14	14					0	0	0.004007	0	0
ANK3	288	broad.mit.edu	37	10	61819111	61819111	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61819111G>A	uc001jky.2	-	41	12865	c.12673C>T	c.(12673-12675)CGA>TGA	p.R4225*	ANK3_uc001jkw.2_Nonsense_Mutation_p.R849*|ANK3_uc009xpa.2_Nonsense_Mutation_p.R849*|ANK3_uc001jkx.2_Nonsense_Mutation_p.R893*|ANK3_uc010qih.1_Nonsense_Mutation_p.R1716*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R1709*|ANK3_uc001jkv.2_Nonsense_Mutation_p.R248*	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4225					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATCCAGTCGATCTAGTAAC	0.398													18	76					0	0	0.007413	0	0
ANK3	288	broad.mit.edu	37	10	61829310	61829310	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61829310C>T	uc001jky.2	-	37	11521	c.11329G>A	c.(11329-11331)GAA>AAA	p.E3777K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3777					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATGTTTTTCATGGGGCCTA	0.338													37	47					0	0	0.017118	0	0
ANK3	288	broad.mit.edu	37	10	61831382	61831382	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61831382C>T	uc001jky.2	-	37	9449	c.9257G>A	c.(9256-9258)GGG>GAG	p.G3086E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3086					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TATCTCTTTCCCTCCCTCTGT	0.418													18	63					0	0	0.004990	0	0
ANK3	288	broad.mit.edu	37	10	61833542	61833542	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61833542G>A	uc001jky.2	-	37	7289	c.7097C>T	c.(7096-7098)TCC>TTC	p.S2366F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2366					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATCTCCCCGGGATAAGTCTTT	0.388													25	26					0	0	0.006320	0	0
ANK3	288	broad.mit.edu	37	10	61894123	61894123	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:61894123G>A	uc001jky.2	-	25	2939	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	ANK3_uc001jkw.2_Missense_Mutation_p.S50F|ANK3_uc009xpa.2_Missense_Mutation_p.S50F|ANK3_uc001jkx.2_Missense_Mutation_p.S94F|ANK3_uc010qih.1_Missense_Mutation_p.S917F|ANK3_uc001jkz.3_Missense_Mutation_p.S910F|ANK3_uc001jla.1_5'Flank|ANK3_uc001jlb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	916					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGAACTGAAGGAGCGGAGGCT	0.418													10	7					0	0	0.010729	0	0
ZNF365	22891	broad.mit.edu	37	10	64159341	64159341	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:64159341C>T	uc001jly.3	+	5	1124	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Silent_p.F339F|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					AGGCCCATTTCCACCCAAAGG	0.557													26	64					0	0	0.003954	0	0
TET1	80312	broad.mit.edu	37	10	70405456	70405456	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:70405456C>T	uc001jok.3	+	4	3475	c.2970C>T	c.(2968-2970)TCC>TCT	p.S990S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	990					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						ACCAAGCATCCACAAAGTCAC	0.348													9	19					0	0	0.010729	0	0
CDH23	64072	broad.mit.edu	37	10	73553033	73553033	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:73553033C>T	uc001jrx.3	+	46	6725	c.6348C>T	c.(6346-6348)TTC>TTT	p.F2116F	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2116	Cadherin 20.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGGACCGCTTCCTCATTCATC	0.577													11	18					0	0	0.008291	0	0
PSAP	5660	broad.mit.edu	37	10	73590882	73590882	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:73590882C>T	uc001jsm.2	-	4	479	c.375_splice	c.e4+1	p.M125_splice		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein						glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						CCATCACTTACCATTTCTCCT	0.488													24	26					0	0	0.008361	0	0
NUDT13	25961	broad.mit.edu	37	10	74890626	74890626	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:74890626G>A	uc001jtj.2	+	9	1149	c.1024G>A	c.(1024-1026)GTG>ATG	p.V342M	NUDT13_uc010qkc.1_Missense_Mutation_p.V216M|NUDT13_uc010qkd.1_Missense_Mutation_p.V145M|NUDT13_uc009xqw.2_RNA|NUDT13_uc001jtk.2_3'UTR|NUDT13_uc010qke.1_Missense_Mutation_p.V145M|NUDT13_uc001jtl.2_Missense_Mutation_p.V253M	NM_015901	NP_056985	Q86X67	NUD13_HUMAN	nudix-type motif 13	342							hydrolase activity|metal ion binding				0	Prostate(51;0.0119)					TAAGGAGTGGGTGGAAAAACA	0.502													13	17					0	0	0.004007	0	0
DUPD1	338599	broad.mit.edu	37	10	76797702	76797702	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:76797702C>T	uc001jwq.1	-	3	555	c.555G>A	c.(553-555)CCG>CCA	p.P185P		NM_001003892	NP_001003892	Q68J44	DUPD1_HUMAN	dual specificity phosphatase and pro isomerase	185	Tyrosine-protein phosphatase.					cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)	2	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					AGCCCCGGTTCGGGAGGACGC	0.652													20	14					0	0	0.014323	0	0
GHITM	27069	broad.mit.edu	37	10	85909907	85909908	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:85909907_85909908CC>TT	uc001kcs.1	+	7	893_894	c.689_690CC>TT	c.(688-690)TCC>TTT	p.S230F	GHITM_uc010qma.1_Missense_Mutation_p.S161F|GHITM_uc010qmb.1_Missense_Mutation_p.S160F	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	230	Helical; (Potential).				apoptosis	integral to membrane|mitochondrial inner membrane					0						GGAGGCCTCTCCACTGTGGCCA	0.569													39	31					0	0	0.004672	0	0
HTR7	3363	broad.mit.edu	37	10	92503376	92503376	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:92503376G>A	uc001kha.2	-	3	1610	c.1367C>T	c.(1366-1368)TCT>TTT	p.S456F	HTR7_uc001kgz.2_Intron|HTR7_uc001khb.2_Intron	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	456	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	ATGGTCTGGAGATTGTAGCAC	0.488													15	33					0	0	0.004990	0	0
C10orf4	118924	broad.mit.edu	37	10	95443821	95443821	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:95443821G>A	uc001kiz.1	-	10	858	c.660C>T	c.(658-660)TTC>TTT	p.F220F	C10orf4_uc001kiv.1_RNA|C10orf4_uc001kja.1_Silent_p.F220F	NM_145246	NP_660289	Q70Z53	F10C1_HUMAN	FRA10AC1 protein	220	Lys-rich.					nucleus	protein binding				0		Colorectal(252;0.122)				ACCTGTGATGGAAATTTAATT	0.318													55	50					0	0	0.014410	0	0
C10orf4	118924	broad.mit.edu	37	10	95454691	95454691	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:95454691G>A	uc001kiz.1	-	5	421	c.223C>T	c.(223-225)CAA>TAA	p.Q75*	C10orf4_uc001kiv.1_RNA|C10orf4_uc001kja.1_Nonsense_Mutation_p.Q75*|C10orf4_uc001kjb.1_Nonsense_Mutation_p.Q75*|C10orf4_uc009xuh.1_Nonsense_Mutation_p.Q76*	NM_145246	NP_660289	Q70Z53	F10C1_HUMAN	FRA10AC1 protein	75						nucleus	protein binding				0		Colorectal(252;0.122)				GTATGTCTTTGATACTGAAAT	0.318													29	29					0	0	0.005443	0	0
LGI1	9211	broad.mit.edu	37	10	95556941	95556941	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:95556941C>T	uc001kjc.3	+	8	1391	c.1055C>T	c.(1054-1056)TCA>TTA	p.S352L	LGI1_uc010qnv.1_Missense_Mutation_p.S304L|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	352	EAR 3.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GCTGACAGTTCAAAAGCTGGT	0.373													12	24					0	0	0.013537	0	0
PLCE1	51196	broad.mit.edu	37	10	95791576	95791576	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:95791576C>T	uc001kjk.2	+	2	1407	c.773C>T	c.(772-774)ACC>ATC	p.T258I	PLCE1_uc010qnx.1_Missense_Mutation_p.T258I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	258					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CATTGTGACACCTTGAATGAT	0.363													11	16					0	0	0.008291	0	0
PLCE1	51196	broad.mit.edu	37	10	96044656	96044656	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:96044656G>A	uc001kjk.2	+	22	5603	c.4969G>A	c.(4969-4971)GAA>AAA	p.E1657K	PLCE1_uc010qnx.1_Missense_Mutation_p.E1641K|PLCE1_uc001kjm.2_Missense_Mutation_p.E1349K|PLCE1_uc001kjp.2_Missense_Mutation_p.E15K|uc001kjo.1_Intron	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1657					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GAATAAAAAGGAAAGCAGACA	0.328													13	12					0	0	0.016723	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701981	96701981	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:96701981G>A	uc001kka.3	+	3	389	c.364G>A	c.(364-366)GAG>AAG	p.E122K	CYP2C9_uc009xut.2_Missense_Mutation_p.E122K|CYP2C9_uc001kjz.2_Missense_Mutation_p.E122K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	122					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GAAATGGAAGGAGATCCGGCG	0.517													16	36					0	0	0.004990	0	0
TMEM180	79847	broad.mit.edu	37	10	104232643	104232643	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:104232643C>T	uc001kvt.2	+	7	1080	c.861C>T	c.(859-861)TTC>TTT	p.F287F	TMEM180_uc010qql.1_Silent_p.F16F|TMEM180_uc010qqm.1_Silent_p.F136F	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	287	Helical; (Potential).					integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GCAACTTCTTCCCTCTCTTCC	0.562													16	51					0	0	0.007413	0	0
PDCD11	22984	broad.mit.edu	37	10	105184842	105184842	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:105184842G>A	uc001kwy.1	+	20	2952	c.2865G>A	c.(2863-2865)CTG>CTA	p.L955L		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	955					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		CTTTCTCCCTGACCTCTCACC	0.557													20	13					0	0	0.008871	0	0
SLK	9748	broad.mit.edu	37	10	105762727	105762727	+	Silent	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:105762727T>G	uc001kxo.1	+	9	1825	c.1791T>G	c.(1789-1791)ACT>ACG	p.T597T	SLK_uc001kxp.1_Silent_p.T597T	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	597	Glu-rich.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CTGGTGGTACTAAGGAAGTTC	0.383													7	10					0	0	0.001984	0	0
CCDC147	159686	broad.mit.edu	37	10	106118351	106118351	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:106118351G>A	uc001kyh.2	+	2	396	c.262G>A	c.(262-264)GAT>AAT	p.D88N		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	88										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CTCTCAGGATGATCAGACCAC	0.423													5	11					0	0	0.001168	0	0
ABLIM1	3983	broad.mit.edu	37	10	116207639	116207639	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:116207639C>T	uc010qsg.1	-	15	1834	c.1735G>A	c.(1735-1737)GGA>AGA	p.G579R	ABLIM1_uc010qsh.1_Missense_Mutation_p.G547R|ABLIM1_uc010qsi.1_Missense_Mutation_p.G519R|ABLIM1_uc010qsk.1_Intron|ABLIM1_uc009xyp.2_Missense_Mutation_p.G543R|ABLIM1_uc010qsf.1_Missense_Mutation_p.G256R|ABLIM1_uc009xyn.2_Missense_Mutation_p.G195R|ABLIM1_uc010qsj.1_Intron|ABLIM1_uc009xyo.2_Missense_Mutation_p.G392R	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	579					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		AGTTGCATACCTACGACAGCA	0.483													4	23					0	0	0.014758	0	0
FAM160B1	57700	broad.mit.edu	37	10	116615042	116615042	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:116615042C>T	uc001lcb.2	+	14	2225	c.1890C>T	c.(1888-1890)TTC>TTT	p.F630F	FAM160B1_uc001lcc.2_Silent_p.F630F	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	630										lung(1)	1						AAGCTGCTTTCTTTGAAGGTC	0.368													4	25					0	0	0.009096	0	0
EIF3A	8661	broad.mit.edu	37	10	120801566	120801566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:120801566G>A	uc001ldu.2	-	19	3612	c.3466C>T	c.(3466-3468)CGG>TGG	p.R1156W	EIF3A_uc010qsu.1_Missense_Mutation_p.R1122W|EIF3A_uc009xzg.1_Missense_Mutation_p.R195W	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1156	Asp-rich.|25 X 10 AA approximate tandem repeats of [DE]-[DE]-[DE]-R-[SEVGFPILV]-[HPSN]- [RSW]-[RL]-[DRGTIHN]-[EPMANLGDT].|24.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		CTGGGAAACCGATCATCATCA	0.493													13	29					0	0	0.013537	0	0
DMBT1	1755	broad.mit.edu	37	10	124345836	124345836	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:124345836C>T	uc001lgk.1	+	16	1826	c.1720C>T	c.(1720-1722)CCC>TCC	p.P574S	DMBT1_uc001lgl.1_Missense_Mutation_p.P564S|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.P574S|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	574	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGGAGCTGCCCCCACAATGG	0.572													35	38					0	0	0.019004	0	0
DMBT1	1755	broad.mit.edu	37	10	124390770	124390770	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:124390770C>T	uc001lgk.1	+	46	6038	c.5932C>T	c.(5932-5934)CGT>TGT	p.R1978C	DMBT1_uc001lgl.1_Missense_Mutation_p.R1968C|DMBT1_uc001lgm.1_Missense_Mutation_p.R1350C|DMBT1_uc009xzz.1_Missense_Mutation_p.R1978C|DMBT1_uc010qtx.1_Missense_Mutation_p.R698C|DMBT1_uc009yab.1_Missense_Mutation_p.R681C|DMBT1_uc009yac.1_Missense_Mutation_p.R272C	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1978	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTGTAATCATCGTGAAGATGC	0.542													27	41					0	0	0.009535	0	0
FAM24B	196792	broad.mit.edu	37	10	124609993	124609993	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:124609993G>A	uc001lgt.2	-	3	373	c.39C>T	c.(37-39)CTC>CTT	p.L13L	CUZD1_uc001lgs.2_5'UTR|CUZD1_uc010qtz.1_Intron|LOC399815_uc001lgu.3_5'Flank	NM_152644	NP_689857	Q8N5W8	FA24B_HUMAN	hypothetical protein LOC196792 precursor	13						extracellular region					0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.136)|COAD - Colon adenocarcinoma(40;0.141)		CTATCAGCAGGAGCAAGGCCG	0.448													24	32					0	0	0.018920	0	0
Unknown	0	broad.mit.edu	37	10	134646883	134646883	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:134646883G>A	uc010qux.1	-	42	6274	c.6274C>T	c.(6274-6276)CGC>TGC	p.R2092C		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TTATGGAGGCGATTCCACAGC	0.403													14	41					0	0	0.016723	0	0
KNDC1	85442	broad.mit.edu	37	10	135000048	135000048	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:135000048C>T	uc001llz.1	+	6	1197	c.1196C>T	c.(1195-1197)TCA>TTA	p.S399L	KNDC1_uc001lma.1_Missense_Mutation_p.S334L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	399					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCCGAGACTTCACACCCCAGC	0.672													10	17					0	0	0.006214	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135101771	135101771	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:135101771G>A	uc001lmg.1	-	11	1941	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	TUBGCP2_uc001lmf.1_Silent_p.F121F|TUBGCP2_uc010qvc.1_Silent_p.F556F|TUBGCP2_uc009ybk.1_Silent_p.F528F|TUBGCP2_uc010qvd.1_Silent_p.F398F|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	528					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		TGAAGTGCACGAAGAAGTCGC	0.677													12	27					0	0	0.013537	0	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771													6	32					0	0	0.004482	0	0
ODF3	113746	broad.mit.edu	37	11	198577	198577	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:198577C>T	uc001lob.2	+	5	820	c.526C>T	c.(526-528)CTA>TTA	p.L176L	ODF3_uc010qvk.1_Silent_p.L176L|ODF3_uc001loc.2_3'UTR	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3	176					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CAGCGACGACCTACACAAGGC	0.627													15	22					0	0	0.006122	0	0
MUC6	4588	broad.mit.edu	37	11	1017124	1017124	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:1017124G>C	uc001lsw.2	-	31	5728	c.5677C>G	c.(5677-5679)CCA>GCA	p.P1893A		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1893	Thr-rich.|2.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTCATTGGTGGGGCTGTGTGG	0.562													21	501					0	0	0.014410	0	0
CARS	833	broad.mit.edu	37	11	3050296	3050296	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:3050296A>G	uc001lxh.2	-	8	786	c.712T>C	c.(712-714)TTA>CTA	p.L238L	CARS_uc001lxe.2_Silent_p.L228L|CARS_uc001lxf.2_Silent_p.L321L|CARS_uc001lxg.2_Silent_p.L238L|CARS_uc010qxo.1_Silent_p.L321L|CARS_uc010qxp.1_Silent_p.L251L|uc001lxi.1_5'Flank	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	238					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACCCGGGTTAAGACATCTGGA	0.478			T	ALK	ALCL								24	14					0	0	0.016522	0	0
OR52K2	119774	broad.mit.edu	37	11	4471197	4471197	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:4471197G>A	uc001lyz.1	+	1	628	c.628G>A	c.(628-630)GTG>ATG	p.V210M		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTTATTGTGGTGTTGGACCT	0.502													51	29					0	0	0.014410	0	0
OR52R1	119695	broad.mit.edu	37	11	4825176	4825176	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:4825176G>A	uc010qym.1	-	1	672	c.672C>T	c.(670-672)ATC>ATT	p.I224I		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCCCCAGTTTGATCACGACCG	0.587													22	16					0	0	0.014323	0	0
OR52R1	119695	broad.mit.edu	37	11	4825646	4825646	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:4825646C>G	uc010qym.1	-	1	202	c.202G>C	c.(202-204)GAT>CAT	p.D68H		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	Error:Variant_position_missing_in_Q8NGF1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGAACGCAATCTACTCTCTGC	0.433													7	24					0	0	0.004482	0	0
OR51A7	119687	broad.mit.edu	37	11	4928737	4928737	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:4928737C>T	uc010qyq.1	+	1	138	c.138C>T	c.(136-138)CTC>CTT	p.L46L		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCACCATTCTCTTTATTATAA	0.498													31	10					0	0	0.009535	0	0
OR51G2	81282	broad.mit.edu	37	11	4936219	4936219	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:4936219C>T	uc001lzr.1	-	1	675	c.675G>A	c.(673-675)CTG>CTA	p.L225L		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCGCAGGATCAGAGCATAAG	0.532													13	10					0	0	0.013537	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443451	5443451	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:5443451C>T	uc010qzd.1	+	1	21	c.21C>T	c.(19-21)ACC>ACT	p.T7T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGACTAACACCACACAAGAAG	0.468													27	11					0	0	0.007291	0	0
CCKBR	887	broad.mit.edu	37	11	6292458	6292458	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:6292458T>A	uc001mcp.2	+	5	1222	c.1029T>A	c.(1027-1029)TTT>TTA	p.F343L	CCKBR_uc001mcq.2_Missense_Mutation_p.F271L|CCKBR_uc001mcr.2_Missense_Mutation_p.F343L|CCKBR_uc001mcs.2_Missense_Mutation_p.F412L|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	343	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TGCTTTTTTTTCTGTGTTGGT	0.597													22	10					0	0	0.012319	0	0
HPX	3263	broad.mit.edu	37	11	6459651	6459651	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:6459651G>A	uc001mdg.2	-	5	486	c.425C>T	c.(424-426)CCA>CTA	p.P142L	HPX_uc001mdf.2_5'Flank|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	142					cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		TGCATCCAGTGGGGATGGGAT	0.488													30	18					0	0	0.010818	0	0
SLC17A6	57084	broad.mit.edu	37	11	22391708	22391708	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:22391708G>A	uc001mqk.2	+	8	1428	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	339	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						ATATTTTGAGGAAGTCTTTGG	0.303													11	8					0	0	0.016723	0	0
LUZP2	338645	broad.mit.edu	37	11	24998210	24998210	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:24998210G>A	uc001mqs.2	+	8	830	c.596G>A	c.(595-597)AGG>AAG	p.R199K	LUZP2_uc009yif.2_Missense_Mutation_p.R113K|LUZP2_uc009yig.2_Missense_Mutation_p.R157K	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	199	Potential.					extracellular region				ovary(1)|skin(1)	2						GCTCTTGACAGGGTAAGTCTA	0.318													14	6					0	0	0.004007	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743107	26743107	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:26743107G>A	uc001mra.2	-	1	468	c.155C>T	c.(154-156)CCT>CTT	p.P52L	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Missense_Mutation_p.P52L	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	52	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CAAGCCGACAGGGCCAAAGCT	0.522													18	7					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	11	30932947	30932947	+	RNA	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:30932947T>C	uc001mss.1	-	6		c.777A>G			uc009yjk.1_Missense_Mutation_p.N673S					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		AAGGTCAGGGTTACTCACAAG	0.373													5	4					0	0	0.001984	0	0
WIT1	51352	broad.mit.edu	37	11	32460438	32460438	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:32460438G>A	uc010rec.1	+	2		c.1156G>A			WIT1_uc010red.1_RNA|WIT1_uc010ree.1_RNA	NR_023920				full-length cDNA clone CS0DC024YP12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0	Breast(20;0.247)					ATGCAGAGGCGAGGACAGCCC	0.323													8	11					0	0	0.003080	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34097953	34097953	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:34097953C>T	uc001mvh.1	+	5	726	c.537C>T	c.(535-537)TCC>TCT	p.S179S	CAPRIN1_uc001mvg.2_Silent_p.S179S|CAPRIN1_uc001mvi.2_Silent_p.S179S|CAPRIN1_uc001mvj.1_Silent_p.S98S	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	179					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				CAATATTGTCCGAAGAGGAGT	0.398													19	11					0	0	0.006122	0	0
ELF5	2001	broad.mit.edu	37	11	34502410	34502410	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:34502410G>A	uc001mvo.1	-	6	840	c.610C>T	c.(610-612)CGG>TGG	p.R204W	ELF5_uc001mvp.1_Missense_Mutation_p.R194W|ELF5_uc009ykd.1_Missense_Mutation_p.R99W	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	204	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				TTAACCACCCGAAAAATTCCT	0.428													23	19					0	0	0.016522	0	0
PEX16	9409	broad.mit.edu	37	11	45935479	45935479	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:45935479G>A	uc001nbu.2	-	9	1090	c.778C>T	c.(778-780)CTG>TTG	p.L260L	PEX16_uc001nbt.2_Silent_p.L260L	NM_004813	NP_004804	Q9Y5Y5	PEX16_HUMAN	peroxisomal biogenesis factor 16 isoform 1	260	Interaction with PEX19.|Cytoplasmic (Potential).				ER-dependent peroxisome organization|peroxisome membrane biogenesis|protein import into peroxisome matrix|protein import into peroxisome membrane	endoplasmic reticulum membrane|integral to peroxisomal membrane	protein C-terminus binding			ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.223)		CTGTCACTCAGGAGGCTCAGG	0.667													14	5					0	0	0.007413	0	0
FNBP4	23360	broad.mit.edu	37	11	47774550	47774550	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:47774550G>A	uc009ylv.2	-	4	708	c.555C>T	c.(553-555)ACC>ACT	p.T185T	FNBP4_uc001ngj.2_Silent_p.T92T|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	185										ovary(1)	1						AAGAAGAAAGGGTAGATGTTG	0.493													15	12					0	0	0.004007	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735873	55735873	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:55735873A>C	uc010rit.1	-	1	67	c.67T>G	c.(67-69)TTA>GTA	p.L23V		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	23	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TACATAAGTAAAAATATACTA	0.323													16	10					0	0	0.004007	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798450	55798450	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:55798450G>A	uc010riw.1	+	1	556	c.556G>A	c.(556-558)GCT>ACT	p.A186T		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ACCTCTTCTGGCTTTATCATG	0.413													75	36					0	0	0.014410	0	0
OR8H3	390152	broad.mit.edu	37	11	55890037	55890037	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:55890037C>T	uc001nii.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TGTATTTTTTCCTTACTCACC	0.428													63	42					0	0	0.014410	0	0
OR5M8	219484	broad.mit.edu	37	11	56257929	56257929	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:56257929C>T	uc001nix.1	-	1	918	c.918G>A	c.(916-918)ATG>ATA	p.M306I		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					AGTATATCTTCATTGACAGCT	0.299													5	4					0	0	0.014758	0	0
OR9G9	504191	broad.mit.edu	37	11	56468777	56468777	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:56468777C>T	uc010rjn.1	+	1	914	c.914C>T	c.(913-915)CCA>CTA	p.P305L		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAACTTCTCCCATAAATCAAG	0.383													6	26					0	0	0.001984	0	0
OR5B17	219965	broad.mit.edu	37	11	58126414	58126414	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:58126414C>T	uc010rke.1	-	1	129	c.129G>A	c.(127-129)ATG>ATA	p.M43I		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTAATATGATCATCCCCAGGT	0.473													19	12					0	0	0.010504	0	0
OR5B12	390191	broad.mit.edu	37	11	58206722	58206722	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:58206722C>T	uc010rkh.1	-	1	903	c.903G>A	c.(901-903)AAG>AAA	p.K301K		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCCCTACAGTCTTTTTAAAGG	0.338													7	4					0	0	0.003080	0	0
GLYATL2	219970	broad.mit.edu	37	11	58605742	58605742	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:58605742G>A	uc001nnd.3	-	3	309	c.178C>T	c.(178-180)CAG>TAG	p.Q60*	GLYATL2_uc009ymq.2_Nonsense_Mutation_p.Q60*	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	60						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	ACCTGTTTCTGAGGCCGGGTA	0.463													14	10					0	0	0.004990	0	0
PLAC1L	219990	broad.mit.edu	37	11	59812158	59812158	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:59812158A>C	uc001nol.2	+	3	443	c.258A>C	c.(256-258)GAA>GAC	p.E86D		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	86						extracellular region				ovary(2)|skin(1)	3						TTTCTGAGGAAACTCTCCTTT	0.408													7	3					0	0	0.003080	0	0
C11orf9	745	broad.mit.edu	37	11	61541599	61541599	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:61541599C>T	uc001nsc.1	+	8	1372	c.1276C>T	c.(1276-1278)CTC>TTC	p.L426F	C11orf9_uc001nse.1_Missense_Mutation_p.L417F	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	426	NDT80.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CCTCAAGCCCCTCGACTGCTT	0.597													6	3					0	0	0.001984	0	0
FEN1	2237	broad.mit.edu	37	11	61563189	61563189	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:61563189C>T	uc001nsg.2	+	2	728	c.356C>T	c.(355-357)GCC>GTC	p.A119V		NM_004111	NP_004102	P39748	FEN1_HUMAN	flap structure-specific endonuclease 1	119					base-excision repair|DNA replication, removal of RNA primer|double-strand break repair|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|UV protection	mitochondrion|nucleolus|nucleoplasm	5'-3' exonuclease activity|5'-flap endonuclease activity|damaged DNA binding|double-stranded DNA binding|double-stranded DNA specific exodeoxyribonuclease activity|metal ion binding|protein binding|ribonuclease H activity			ovary(1)	1						GCTGCTGGGGCCGAGCAGGAG	0.587								Direct_reversal_of_damage|Editing_and_processing_nucleases					21	10					0	0	0.010504	0	0
LRRN4CL	221091	broad.mit.edu	37	11	62455437	62455437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:62455437G>A	uc001nun.2	-	2	851	c.544C>T	c.(544-546)CCT>TCT	p.P182S		NM_203422	NP_981967	Q8ND94	LRN4L_HUMAN	LRRN4 C-terminal like precursor	182	Extracellular (Potential).					integral to membrane					0						CGGCTGCAAGGCCCGAAGGCA	0.721													5	0					0	0	0.014758	0	0
SLC22A9	114571	broad.mit.edu	37	11	63174023	63174023	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:63174023G>A	uc001nww.2	+	7	1396	c.1128G>A	c.(1126-1128)GGG>GGA	p.G376G	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	376	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AGCATCTGGGGAACAATGTTT	0.443													29	12					0	0	0.017118	0	0
DNAJB13	374407	broad.mit.edu	37	11	73676008	73676008	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:73676008C>T	uc001ouo.2	+	4	1171	c.420C>T	c.(418-420)GTC>GTT	p.V140V		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	140					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					ACCCCCAAGTCGAACGGGATC	0.527											OREG0021218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	10					0	0	0.016522	0	0
ODZ4	26011	broad.mit.edu	37	11	78369576	78369576	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:78369576C>T	uc001ozl.3	-	34	8300	c.7837G>A	c.(7837-7839)GGG>AGG	p.G2613R	ODZ4_uc001ozk.3_Missense_Mutation_p.G838R|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2613	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTATCCACCCCATCAATGGTG	0.557													15	8					0	0	0.004990	0	0
ODZ4	26011	broad.mit.edu	37	11	78413324	78413324	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:78413324G>A	uc001ozl.3	-	28	4797	c.4334C>T	c.(4333-4335)CCC>CTC	p.P1445L	ODZ4_uc009yvb.1_Missense_Mutation_p.P29L	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1445	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GCAGTGCATGGGCCTCCCGGC	0.542													18	8					0	0	0.004990	0	0
FAT3	120114	broad.mit.edu	37	11	92534757	92534757	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:92534757G>A	uc001pdj.3	+	9	8595	c.8578G>A	c.(8578-8580)GAA>AAA	p.E2860K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2860	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTCCCAGCCCGAAAAGGTAAT	0.498										TCGA Ovarian(4;0.039)			118	62					0	0	0.014410	0	0
HEPHL1	341208	broad.mit.edu	37	11	93839204	93839204	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:93839204G>A	uc001pep.2	+	17	3110	c.2953G>A	c.(2953-2955)GAA>AAA	p.E985K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	985	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CATAATGAACGAAGATACAAT	0.338													11	5					0	0	0.013537	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103156983	103156983	+	Splice_Site	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:103156983G>T	uc001pho.2	+	74	11035	c.10891_splice	c.e74-1	p.I3631_splice	DYNC2H1_uc001phn.1_Splice_Site_p.I3638_splice|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1						cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TTATTTTTTAGATTGCTCTCC	0.328													58	37					3.94896e-32	4.55837e-32	0.014410	1	0
USP28	57646	broad.mit.edu	37	11	113698048	113698048	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:113698048A>G	uc001poh.2	-	11	1127	c.1094T>C	c.(1093-1095)TTT>TCT	p.F365S	USP28_uc001pog.2_Missense_Mutation_p.F73S|USP28_uc010rwy.1_Missense_Mutation_p.F240S|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.F365S	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	365					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TGAGAGTTCAAAGGTCAACAC	0.358													11	8					0	0	0.016723	0	0
CADM1	23705	broad.mit.edu	37	11	115047285	115047285	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:115047285C>T	uc001ppi.3	-	10	1367	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E	CADM1_uc001ppf.3_Intron|CADM1_uc001ppk.3_Missense_Mutation_p.G385E|CADM1_uc001ppj.3_Missense_Mutation_p.G414E|CADM1_uc001pph.3_Missense_Mutation_p.G176E	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	413	Cytoplasmic (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		GTCATCGGCTCCTTTGGCTTC	0.463													37	16					0	0	0.007835	0	0
CEP164	22897	broad.mit.edu	37	11	117252450	117252450	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:117252450C>T	uc001prc.2	+	13	1590	c.1443C>T	c.(1441-1443)GCC>GCT	p.A481A	CEP164_uc001prb.2_Silent_p.A484A|CEP164_uc010rxk.1_Silent_p.A455A|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_5'Flank	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	481	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AGGAGCGGGCCCAGAGTCCCC	0.662													4	2					0	0	0.014758	0	0
DSCAML1	57453	broad.mit.edu	37	11	117299400	117299400	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:117299400T>A	uc001prh.1	-	33	5988	c.5986A>T	c.(5986-5988)ACC>TCC	p.T1996S		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1936	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GTGTGGTAGGTTCGAGCCAGG	0.667													9	7					0	0	0.006214	0	0
MLL	4297	broad.mit.edu	37	11	118373344	118373344	+	Missense_Mutation	SNP	T	C	C	rs139450035		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:118373344T>C	uc001pta.2	+	27	6751	c.6728T>C	c.(6727-6729)GTT>GCT	p.V2243A	MLL_uc001ptb.2_Missense_Mutation_p.V2246A	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2243					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GCCAAAGTAGTTGATCATGTC	0.423			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								20	12					0	0	0.008871	0	0
HINFP	25988	broad.mit.edu	37	11	119001629	119001629	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:119001629C>T	uc001pvp.2	+	4	565	c.376C>T	c.(376-378)CCT>TCT	p.P126S	HINFP_uc010rzb.1_Missense_Mutation_p.P126S|HINFP_uc001pvq.2_Missense_Mutation_p.P126S|HINFP_uc001pvr.2_5'Flank	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	126					DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CCCTGATATCCCTGACCACTT	0.582													22	6					0	0	0.014323	0	0
CBL	867	broad.mit.edu	37	11	119149279	119149279	+	Silent	SNP	C	T	T	rs148368481		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:119149279C>T	uc001pwe.2	+	9	1425	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	429	Asp/Glu-rich (acidic).				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.G397_I429del(1)|p.I429_F434del(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		CTGAACCCATCGTGGTAGATC	0.473									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				29	16					0	0	0.008361	0	0
TECTA	7007	broad.mit.edu	37	11	121000383	121000383	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:121000383C>T	uc010rzo.1	+	9	2404	c.2404C>T	c.(2404-2406)CCT>TCT	p.P802S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	802	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTTTTTCCATCCTTCGGGGAA	0.428													34	15					0	0	0.013726	0	0
SORL1	6653	broad.mit.edu	37	11	121348870	121348870	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:121348870C>T	uc001pxx.2	+	3	526	c.446C>T	c.(445-447)TCA>TTA	p.S149L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	149	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AAGAAAATTTCAGACAAGTTA	0.438													16	6					0	0	0.003163	0	0
OR6T1	219874	broad.mit.edu	37	11	123813961	123813961	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:123813961C>T	uc010sab.1	-	1	585	c.585G>A	c.(583-585)CTG>CTA	p.L195L		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CCACCAGTTTCAGCAGGTGGG	0.547													24	11					0	0	0.004656	0	0
OR8B12	219858	broad.mit.edu	37	11	124412706	124412706	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:124412706G>A	uc010sam.1	-	1	845	c.845C>T	c.(844-846)CCC>CTC	p.P282L		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		GTTTAACACGGGGACTATTAT	0.428													11	8					0	0	0.002450	0	0
ROBO4	54538	broad.mit.edu	37	11	124757634	124757634	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:124757634C>T	uc001qbg.2	-	13	2191	c.2051G>A	c.(2050-2052)AGC>AAC	p.S684N	ROBO4_uc010sas.1_Missense_Mutation_p.S539N|ROBO4_uc001qbh.2_Missense_Mutation_p.S574N|ROBO4_uc001qbi.2_Missense_Mutation_p.S242N|ROBO4_uc010sat.1_Missense_Mutation_p.S242N	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	684					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CTCACCTGGGCTTTGGGAAAG	0.607													17	8					0	0	0.006122	0	0
TMEM45B	120224	broad.mit.edu	37	11	129725643	129725643	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:129725643G>A	uc001qfe.1	+	4	487	c.426G>A	c.(424-426)CTG>CTA	p.L142L	TMEM45B_uc001qff.1_Silent_p.L142L	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	142						integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		GGCCTCCGCTGGACCAGCACA	0.542													23	21					0	0	0.016522	0	0
NFRKB	4798	broad.mit.edu	37	11	129744122	129744122	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:129744122G>A	uc001qfi.2	-	21	2366	c.2165C>T	c.(2164-2166)CCT>CTT	p.P722L	NFRKB_uc001qfg.2_Missense_Mutation_p.P747L|NFRKB_uc001qfh.2_Missense_Mutation_p.P745L|NFRKB_uc010sbw.1_Missense_Mutation_p.P732L|NFRKB_uc009zcr.2_Missense_Mutation_p.P8L	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	722	Pro-rich.|Ser-rich.				DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		GGGGGTTACAGGTGTGACTGG	0.572													25	19					0	0	0.005443	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662687	662687	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:662687C>T	uc001qii.1	+	14	1598	c.1598C>T	c.(1597-1599)CCT>CTT	p.P533L	B4GALNT3_uc001qij.1_Missense_Mutation_p.P436L|B4GALNT3_uc001qik.1_Missense_Mutation_p.P82L	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	533	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GACAAGTGGCCTCCTGGGCAC	0.622													9	14					0	0	0.004482	0	0
AKAP3	10566	broad.mit.edu	37	12	4736484	4736484	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:4736484G>A	uc001qnb.3	-	4	1813	c.1584C>T	c.(1582-1584)ATC>ATT	p.I528I		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	528					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GGGCAGACACGATCAGGTCCT	0.517													7	17					0	0	0.003080	0	0
AKAP3	10566	broad.mit.edu	37	12	4737030	4737030	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:4737030C>T	uc001qnb.3	-	4	1267	c.1038G>A	c.(1036-1038)GGG>GGA	p.G346G		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	346					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TCATGAGGGTCCCTGTGACGC	0.493													10	24					0	0	0.008291	0	0
VWF	7450	broad.mit.edu	37	12	6125396	6125396	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:6125396C>T	uc001qnn.1	-	31	5564	c.5314G>A	c.(5314-5316)GAT>AAT	p.D1772N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1772	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCCAAGGCATCCCCTGAGGAT	0.532													4	20					0	0	0.009096	0	0
VWF	7450	broad.mit.edu	37	12	6138638	6138638	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:6138638G>A	uc001qnn.1	-	22	3087	c.2837C>T	c.(2836-2838)CCC>CTC	p.P946L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	946	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	ATCCTTCATGGGCCTCTTCAC	0.572													7	16					0	0	0.003080	0	0
GNB3	2784	broad.mit.edu	37	12	6952642	6952642	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:6952642C>T	uc001qrd.2	+	7	788	c.383C>T	c.(382-384)TCC>TTC	p.S128F	GNB3_uc001qrc.2_Missense_Mutation_p.S84F|GNB3_uc009zfe.2_Missense_Mutation_p.S128F	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	128					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						AACCTCAAATCCCGTGAGGGC	0.592													13	31					0	0	0.002450	0	0
USP5	8078	broad.mit.edu	37	12	6965958	6965958	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:6965958C>T	uc001qri.3	+	6	731	c.672C>T	c.(670-672)TTC>TTT	p.F224F	USP5_uc001qrh.3_Silent_p.F224F	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	224	Substrate binding.|UBP-type.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						GACGCTACTTCGATGGCAGTG	0.577													14	39					0	0	0.004007	0	0
ACSM4	341392	broad.mit.edu	37	12	7475910	7475910	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:7475910G>A	uc001qsx.1	+	8	1206	c.1206G>A	c.(1204-1206)CAG>CAA	p.Q402Q		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	402					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						ATGATGTCCAGGTAGGTTGAG	0.398													3	7					0	0	0.004672	0	0
CD163	9332	broad.mit.edu	37	12	7637846	7637846	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:7637846G>A	uc001qsz.3	-	11	2753	c.2625C>T	c.(2623-2625)ATC>ATT	p.I875I	CD163_uc001qta.3_Silent_p.I875I|CD163_uc009zfw.2_Silent_p.I908I	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	875	SRCR 8.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATGCAGGGTTGATTTTCCCTT	0.522													14	44					0	0	0.016723	0	0
SLC2A14	144195	broad.mit.edu	37	12	7981326	7981326	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:7981326C>T	uc001qtk.2	-	11	1512	c.719G>A	c.(718-720)AGA>AAA	p.R240K	SLC2A14_uc001qtl.2_Missense_Mutation_p.R217K|SLC2A14_uc001qtm.2_Missense_Mutation_p.R217K|SLC2A14_uc010sgg.1_Missense_Mutation_p.R131K|SLC2A14_uc001qtn.2_Missense_Mutation_p.R240K|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Missense_Mutation_p.R255K	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	240	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		CTCTTTTTTTCTGTTAATGAG	0.433													13	39					0	0	0.016723	0	0
SLC2A3	6515	broad.mit.edu	37	12	8075447	8075447	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:8075447G>A	uc001qtr.2	-	9	1504	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	414	Helical; Name=11; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		ATCCGACTAGGAAGTTGGAGG	0.532													23	28					0	0	0.004656	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376125	8376125	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:8376125G>A	uc001qui.2	-	6	911	c.352C>T	c.(352-354)CTC>TTC	p.L118F	FAM90A1_uc001quh.2_Missense_Mutation_p.L118F	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	118							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		AATATGTGGAGGAGAGCCTTC	0.567													12	9					0	0	0.016723	0	0
CLEC6A	93978	broad.mit.edu	37	12	8612252	8612252	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:8612252C>T	uc001qum.1	+	3	298	c.181C>T	c.(181-183)CAT>TAT	p.H61Y		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	61	Extracellular (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					ACACTCATATCATTCAAGTCT	0.373													13	57					0	0	0.004007	0	0
CLEC6A	93978	broad.mit.edu	37	12	8628733	8628733	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:8628733C>T	uc001qum.1	+	5	499	c.382C>T	c.(382-384)CAG>TAG	p.Q128*		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	128	Extracellular (Potential).|C-type lectin.				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					tttcattgtccagcagctgaa	0.075													6	21					0	0	0.001168	0	0
TAS2R9	50835	broad.mit.edu	37	12	10962048	10962048	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:10962048G>A	uc001qyx.2	-	1	720	c.627C>T	c.(625-627)ACC>ACT	p.T209T	TAS2R8_uc010shh.1_5'Flank	NM_023917	NP_076406	Q9NYW1	TA2R9_HUMAN	taste receptor, type 2, member 9	209	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						GAATCTGCTTGGTGTGTCTAA	0.478													6	26					0	0	0.001984	0	0
PRB4	5545	broad.mit.edu	37	12	11461221	11461221	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:11461221T>C	uc001qzf.1	-	3	730	c.696A>G	c.(694-696)CAA>CAG	p.Q232Q	PRB4_uc001qzt.2_Silent_p.Q232Q	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	295						extracellular region				ovary(1)	1						GCCTGCCCCCTTGAGGAGGTG	0.587										HNSCC(22;0.051)			26	84					0	0	0.003954	0	0
PRB2	653247	broad.mit.edu	37	12	11545984	11545984	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:11545984C>T	uc010shk.1	-	3	1063	c.1028G>A	c.(1027-1029)GGA>GAA	p.G343E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.597													60	62					0	0	0.014410	0	0
DUSP16	80824	broad.mit.edu	37	12	12630159	12630159	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:12630159G>A	uc001rao.1	-	7	2238	c.1606C>T	c.(1606-1608)CTT>TTT	p.L536F	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.L388F	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	536					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		CAGCCCTTAAGGCCCAGGCCA	0.577													31	31					0	0	0.010818	0	0
KIAA1467	57613	broad.mit.edu	37	12	13220149	13220149	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:13220149C>T	uc001rbi.2	+	7	1084	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	354						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		CGAGACAGCTCACCACCTTCT	0.468													21	31					0	0	0.010504	0	0
C12orf36	283422	broad.mit.edu	37	12	13529176	13529176	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:13529176C>T	uc001rbs.1	-	2	382	c.164G>A	c.(163-165)GGG>GAG	p.G55E		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		cctctgagtccctccAAGCAG	0.05													28	33					0	0	0.009535	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717165	13717165	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:13717165G>A	uc001rbt.2	-	13	3186	c.3007C>T	c.(3007-3009)CTC>TTC	p.L1003F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1003	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CAGTCGTAGAGCCCATCGATG	0.592													16	15					0	0	0.006122	0	0
GRIN2B	2904	broad.mit.edu	37	12	13761755	13761755	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:13761755G>A	uc001rbt.2	-	9	1971	c.1792C>T	c.(1792-1794)CCC>TCC	p.P598S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	598	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTGAAAGAGGGTCCACCAGGC	0.498													12	18					0	0	0.010729	0	0
PLBD1	79887	broad.mit.edu	37	12	14693725	14693725	+	Silent	SNP	C	T	T	rs146454926		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:14693725C>T	uc001rcc.1	-	4	692	c.531G>A	c.(529-531)AAG>AAA	p.K177K		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	177					lipid catabolic process	extracellular region	hydrolase activity				0						TAGCCCTCTTCTTTGCTCCTA	0.353													30	57					0	0	0.012213	0	0
GUCY2C	2984	broad.mit.edu	37	12	14767822	14767822	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:14767822T>C	uc001rcd.2	-	26	3163	c.3026A>G	c.(3025-3027)AAC>AGC	p.N1009S		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	1009	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GGTTGGCAGGTTGAATTTCTG	0.478													4	5					0	0	0.001168	0	0
ART4	420	broad.mit.edu	37	12	14993593	14993593	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:14993593C>T	uc001rcl.1	-	2	1005	c.639G>A	c.(637-639)CTG>CTA	p.L213L	ART4_uc009zid.1_Intron|ART4_uc009zie.1_Intron|ART4_uc001rcm.1_Silent_p.L213L	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	213					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						CCTCTTCTTTCAGGAGGGATG	0.488													6	22					0	0	0.001168	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891565	18891565	+	Silent	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:18891565T>A	uc001rdy.2	+	1	521	c.363T>A	c.(361-363)CTT>CTA	p.L121L	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	121					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GAGTTGTTCTTCTGTGCGCCT	0.383													12	22					0	0	0.010729	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032414	21032414	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:21032414G>A	uc001rek.2	+	10	1306	c.1180G>A	c.(1180-1182)GGA>AGA	p.G394R	SLCO1B3_uc001rel.2_Missense_Mutation_p.G394R|SLCO1B3_uc010sil.1_Missense_Mutation_p.G394R|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G219R	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	394	Helical; Name=8; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GTTTTTAGGAGGATTTATCAT	0.284													13	13					0	0	0.013537	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032512	21032512	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:21032512C>T	uc001rek.2	+	10	1404	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F	SLCO1B3_uc001rel.2_Silent_p.F426F|SLCO1B3_uc010sil.1_Silent_p.F426F|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.F251F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	426	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTCTATATTTCCCTCTAATCT	0.313													5	37					0	0	0.001984	0	0
RECQL	5965	broad.mit.edu	37	12	21636367	21636367	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:21636367G>C	uc001rex.2	-	7	991	c.643C>G	c.(643-645)CGA>GGA	p.R215G	RECQL_uc001rey.2_Missense_Mutation_p.R215G	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	215	Helicase ATP-binding.				DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						ACAGCAATTCGAGTAAATCTC	0.383								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					19	17					0	0	0.012319	0	0
ST8SIA1	6489	broad.mit.edu	37	12	22354546	22354546	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:22354546G>A	uc001rfo.3	-	5	1493	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	ST8SIA1_uc009zix.2_Silent_p.I194I	NM_003034	NP_003025	Q92185	SIA8A_HUMAN	alpha-2,8-sialyltransferase 1	337	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(3)	3						TCAGTGCACCGATTTTATGAA	0.483													42	51					0	0	0.009718	0	0
LRMP	4033	broad.mit.edu	37	12	25259884	25259884	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:25259884G>A	uc001rgh.2	+	20	2190	c.1156G>A	c.(1156-1158)GAT>AAT	p.D386N	LRMP_uc010sja.1_Missense_Mutation_p.D386N|LRMP_uc010sjb.1_Missense_Mutation_p.D333N|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.D386N|LRMP_uc010sjd.1_Missense_Mutation_p.D333N	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	442	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					CAGAACTAAAGATGACTCAGA	0.313													3	5					0	0	0.004672	0	0
H3F3C	440093	broad.mit.edu	37	12	31944956	31944956	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:31944956G>A	uc001rkr.2	-	1	220	c.145C>T	c.(145-147)CGA>TGA	p.R49*		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	49					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CGAATCTCTCGAAGCGCCACG	0.602										HNSCC(67;0.2)			18	18					0	0	0.012319	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43777680	43777680	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:43777680C>A	uc010skx.1	-	30	4553	c.4553G>T	c.(4552-4554)CGA>CTA	p.R1518L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1518	TSP type-1 12.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGAACAAGGTCGGGTGGACTG	0.493													28	35					6.50621e-10	7.45047e-10	0.013726	1	0
SENP1	29843	broad.mit.edu	37	12	48491808	48491808	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:48491808G>A	uc001rqx.2	-	3	550	c.104C>T	c.(103-105)CCA>CTA	p.P35L	SENP1_uc001rqw.2_Missense_Mutation_p.P35L|SENP1_uc001rqy.2_5'UTR|SENP1_uc001rqz.2_5'UTR|SENP1_uc009zkx.2_Missense_Mutation_p.P35L	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	35					activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				CTGGTCCTCTGGAAAACCTGT	0.408													4	11					0	0	0.009096	0	0
MLL2	8085	broad.mit.edu	37	12	49416504	49416504	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:49416504G>A	uc001rta.3	-	51	16207	c.16207C>T	c.(16207-16209)CGC>TGC	p.R5403C		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5403	SET.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ATACGGGAGCGAGCCAGGTAC	0.562			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			28	34					0	0	0.009535	0	0
GALNT6	11226	broad.mit.edu	37	12	51773256	51773256	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:51773256C>T	uc001ryk.2	-	2	535	c.310G>A	c.(310-312)GAA>AAA	p.E104K	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.E104K|GALNT6_uc010snh.1_Missense_Mutation_p.E104K	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	104	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GGTGGCCGTTCCCAGAAGGGC	0.567													11	53					0	0	0.013537	0	0
KRT85	3891	broad.mit.edu	37	12	52760878	52760878	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:52760878G>A	uc001sag.2	-	1	432	c.312C>T	c.(310-312)CTC>CTT	p.L104L		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	104	Head.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGGCGTGAGGAGGCTCTCGT	0.652													43	51					0	0	0.014410	0	0
KRT75	9119	broad.mit.edu	37	12	52820623	52820623	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:52820623C>T	uc001saj.2	-	8	1417	c.1395G>A	c.(1393-1395)GAG>GAA	p.E465E		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	465	Tail.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GAGAAACTCCCTCTCCACTCA	0.493													14	11					0	0	0.004990	0	0
KRT71	112802	broad.mit.edu	37	12	52941945	52941945	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:52941945G>A	uc001sao.2	-	5	1039	c.969C>T	c.(967-969)TAC>TAT	p.Y323Y		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	323	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CCTTGGTCTGGTACAGGGCCT	0.582													16	25					0	0	0.004007	0	0
KRT71	112802	broad.mit.edu	37	12	52943849	52943849	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:52943849C>G	uc001sao.2	-	2	690	c.620G>C	c.(619-621)AGG>ACG	p.R207T		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	207	Coil 1B.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CCGCACATTCCTCAGCTCCGA	0.602													15	64					0	0	0.006122	0	0
KRT72	140807	broad.mit.edu	37	12	52980741	52980741	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:52980741G>A	uc001sar.2	-	8	1420	c.1334C>T	c.(1333-1335)TCT>TTT	p.S445F	KRT72_uc001saq.2_Missense_Mutation_p.S445F|KRT72_uc010sns.1_Missense_Mutation_p.S403F|KRT72_uc010snt.1_Missense_Mutation_p.S257F	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	445	Tail.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		GATGCTCACAGAATTTGGATA	0.428													14	27					0	0	0.004007	0	0
KRT4	3851	broad.mit.edu	37	12	53202184	53202184	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:53202184G>A	uc001saz.2	-	6	1512	c.1241C>T	c.(1240-1242)TCG>TTG	p.S414L		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	340						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TTGGTCAACCGAGATCTGGAG	0.493													8	31					0	0	0.003080	0	0
SOAT2	8435	broad.mit.edu	37	12	53499366	53499366	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:53499366G>A	uc001sbv.2	+	4	385	c.297G>A	c.(295-297)GGG>GGA	p.G99G	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	99					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						CATCCCTGGGGAAACAGAAAG	0.502													8	10					0	0	0.006214	0	0
OR9K2	441639	broad.mit.edu	37	12	55523903	55523903	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:55523903C>T	uc010spe.1	+	1	351	c.351C>T	c.(349-351)ATC>ATT	p.I117I		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	117	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						ACAAGTCTATCTCCTTTGCAG	0.448													19	36					0	0	0.010504	0	0
OR10A7	121364	broad.mit.edu	37	12	55615224	55615224	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:55615224C>T	uc010spf.1	+	1	416	c.416C>T	c.(415-417)TCC>TTC	p.S139F		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						ATGAACAGGTCCCTATGCTTG	0.468													13	32					0	0	0.013537	0	0
OR6C6	283365	broad.mit.edu	37	12	55688939	55688939	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:55688939G>A	uc010sph.1	-	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						ATAGAAACAGGAAAATCACAA	0.408													6	21					0	0	0.001168	0	0
OR6C2	341416	broad.mit.edu	37	12	55846720	55846720	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:55846720C>T	uc001sgz.1	+	1	723	c.723C>T	c.(721-723)TCC>TCT	p.S241S		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CCTGTTCATCCCACATGATTG	0.418													21	30					0	0	0.008871	0	0
STAT6	6778	broad.mit.edu	37	12	57493220	57493220	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:57493220G>A	uc009zpe.2	-	16	1999	c.1748C>T	c.(1747-1749)TCT>TTT	p.S583F	STAT6_uc009zpf.2_Missense_Mutation_p.S583F|STAT6_uc001sna.2_Missense_Mutation_p.S583F|STAT6_uc010srb.1_Missense_Mutation_p.S473F|STAT6_uc010src.1_Missense_Mutation_p.S473F|STAT6_uc010srd.1_Missense_Mutation_p.S473F|STAT6_uc009zpg.2_Missense_Mutation_p.S632F	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	583	SH2.				regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						TATCTGTGGAGAGCCTATGGT	0.527													25	28					0	0	0.003954	0	0
STAC3	246329	broad.mit.edu	37	12	57642489	57642489	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:57642489G>A	uc001snp.2	-	4	627	c.432C>T	c.(430-432)ATC>ATT	p.I144I	STAC3_uc009zpl.2_Intron|STAC3_uc001snq.2_Silent_p.I105I|STAC3_uc010srm.1_Intron	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	144					intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						GCCTACTCACGATCTTGCCGA	0.318													141	150					0	0	0.014410	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58020668	58020668	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:58020668C>T	uc001spg.1	-	11	1893	c.1461G>A	c.(1459-1461)CTG>CTA	p.L487L	B4GALNT1_uc010sru.1_Silent_p.L432L	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	487	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			AAGGCAGCTTCAGTTTGGATG	0.587													7	16					0	0	0.004482	0	0
SLC16A7	9194	broad.mit.edu	37	12	60098648	60098649	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:60098648_60098649GG>TA	uc001sqs.2	+	3	365_366	c.66_67GG>TA	c.(64-69)GTGGTT>GTTATT	p.V23I	SLC16A7_uc001sqt.2_Missense_Mutation_p.V23I|SLC16A7_uc001squ.2_Missense_Mutation_p.V23I|SLC16A7_uc009zqi.2_5'UTR|SLC16A7_uc010ssi.1_5'UTR	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	23	Helical; (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GTTGGATTGTGGTTGGAGCAGC	0.455													6	13					0	0	0.004672	0	0
SLC16A7	9194	broad.mit.edu	37	12	60165093	60165093	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:60165093C>T	uc001sqs.2	+	4	610	c.311C>T	c.(310-312)TCC>TTC	p.S104F	SLC16A7_uc001sqt.2_Missense_Mutation_p.S104F|SLC16A7_uc001squ.2_Missense_Mutation_p.S104F|SLC16A7_uc009zqi.2_Missense_Mutation_p.S5F|SLC16A7_uc010ssi.1_Missense_Mutation_p.S5F	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	104	Helical; (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GTGTTGGCCTCCTTTAGTAGC	0.443													30	76					0	0	0.009535	0	0
LGR5	8549	broad.mit.edu	37	12	71978369	71978369	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:71978369A>C	uc001swl.2	+	18	2627	c.2579A>C	c.(2578-2580)CAG>CCG	p.Q860P	LGR5_uc001swm.2_Missense_Mutation_p.Q836P|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	860	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GTCGAAAAACAGTCCTGTGAC	0.468													173	186					0	0	0.014410	0	0
TRHDE	29953	broad.mit.edu	37	12	72962383	72962383	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:72962383G>A	uc001sxa.2	+	10	1973	c.1943G>A	c.(1942-1944)GGA>GAA	p.G648E		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	648	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATTGTGGTAGGAAATAGAAGC	0.318													6	23					0	0	0.006214	0	0
BBS10	79738	broad.mit.edu	37	12	76740717	76740717	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:76740717G>A	uc001syd.1	-	2	1132	c.1048C>T	c.(1048-1050)CCA>TCA	p.P350S		NM_024685	NP_078961	Q8TAM1	BBS10_HUMAN	Bardet-Biedl syndrome 10	350					cellular protein metabolic process|nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	cilium	ATP binding			ovary(1)|skin(1)	2						GGTACAAATGGAGAAAGACCA	0.383									Bardet-Biedl_syndrome				10	12					0	0	0.008291	0	0
MYF6	4618	broad.mit.edu	37	12	81102711	81102711	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:81102711C>T	uc001szf.1	+	3	754	c.701C>T	c.(700-702)CCC>CTC	p.P234L		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	234					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CGCAAACTCCCCTGCGTGGAG	0.542													15	10					0	0	0.002450	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373908	86373908	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:86373908C>A	uc001tai.3	-	8	1846	c.596G>T	c.(595-597)CGT>CTT	p.R199L	MGAT4C_uc001tal.3_Missense_Mutation_p.R199L|MGAT4C_uc001taj.3_Missense_Mutation_p.R199L|MGAT4C_uc001tak.3_Missense_Mutation_p.R199L|MGAT4C_uc010sum.1_Missense_Mutation_p.R223L|MGAT4C_uc001tah.3_Missense_Mutation_p.R199L	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	199	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TTGCTTGGAACGAAATTTGAC	0.338													29	41					1.77063e-15	2.03759e-15	0.005443	1	0
LUM	4060	broad.mit.edu	37	12	91502014	91502014	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:91502014C>T	uc001tbm.2	-	2	1132	c.743G>A	c.(742-744)GGA>GAA	p.G248E	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	248	LRR 8.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						GAAAGAATTTCCAGGTATTCC	0.383													13	36					0	0	0.016723	0	0
NUDT4	11163	broad.mit.edu	37	12	93793091	93793091	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:93793091C>T	uc001tcm.2	+	5	877	c.479C>T	c.(478-480)CCG>CTG	p.P160L	NUDT4_uc010sup.1_Missense_Mutation_p.P160L|NUDT4_uc001tcn.2_Missense_Mutation_p.P108L|NUDT4_uc010suq.1_Missense_Mutation_p.P109L|NUDT4_uc001tco.2_Missense_Mutation_p.P108L	NM_019094	NP_061967	Q9NZJ9	NUDT4_HUMAN	nudix-type motif 4 isoform alpha	160					calcium-mediated signaling|cyclic nucleotide metabolic process|cyclic-nucleotide-mediated signaling|intracellular transport|regulation of RNA export from nucleus	cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0						CCTTCCCTTCCGGATAATAAT	0.478													19	171					0	0	0.010504	0	0
C12orf63	374467	broad.mit.edu	37	12	97136343	97136343	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:97136343C>T	uc001tet.1	+	19	2551	c.2473C>T	c.(2473-2475)CAT>TAT	p.H825Y		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	825										skin(6)|ovary(1)	7						TGCACAGATTCATGGCATTGG	0.348													4	4					0	0	0.009096	0	0
SLC17A8	246213	broad.mit.edu	37	12	100784871	100784871	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:100784871C>T	uc010svi.1	+	3	760	c.447C>T	c.(445-447)TTC>TTT	p.F149F	SLC17A8_uc009ztx.2_Silent_p.F149F	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	149	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						CAGGTGGTTTCATTTCAAACA	0.378													7	22					0	0	0.003080	0	0
NR1H4	9971	broad.mit.edu	37	12	100897197	100897197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:100897197C>T	uc001tht.1	+	1	60	c.32C>T	c.(31-33)CCA>CTA	p.P11L	NR1H4_uc001thp.1_Intron|NR1H4_uc001thq.1_Intron|NR1H4_uc010svj.1_Intron|NR1H4_uc001thr.1_Intron|NR1H4_uc010svk.1_Intron|NR1H4_uc001ths.1_Missense_Mutation_p.P11L	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	11					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TTAGAAAATCCAATTCAAATT	0.448													10	5					0	0	0.013537	0	0
MYBPC1	4604	broad.mit.edu	37	12	102053564	102053564	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:102053564A>T	uc001tii.2	+	17	1909	c.1807A>T	c.(1807-1809)AAC>TAC	p.N603Y	MYBPC1_uc001tig.2_Missense_Mutation_p.N628Y|MYBPC1_uc010svq.1_Missense_Mutation_p.N590Y|MYBPC1_uc001tih.2_Missense_Mutation_p.N628Y|MYBPC1_uc001tij.2_Missense_Mutation_p.N603Y|MYBPC1_uc010svr.1_Missense_Mutation_p.N603Y|MYBPC1_uc010svs.1_Missense_Mutation_p.N603Y|MYBPC1_uc010svt.1_Missense_Mutation_p.N591Y|MYBPC1_uc010svu.1_Missense_Mutation_p.N584Y|MYBPC1_uc001tik.2_Missense_Mutation_p.N577Y	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	603	Ig-like C2-type 5.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						CAATCTGAAAAACGAAGCTGG	0.443													14	10					0	0	0.004007	0	0
GLT8D2	83468	broad.mit.edu	37	12	104387195	104387195	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:104387195G>A	uc001tkh.1	-	10	1261	c.855C>T	c.(853-855)AAC>AAT	p.N285N	GLT8D2_uc001tki.1_Silent_p.N285N	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	285	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						GCCACAGGGGGTTAATTGTGG	0.378													10	16					0	0	0.008291	0	0
GLT8D2	83468	broad.mit.edu	37	12	104388206	104388206	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:104388206G>T	uc001tkh.1	-	9	1080	c.674C>A	c.(673-675)TCT>TAT	p.S225Y	GLT8D2_uc001tki.1_Missense_Mutation_p.S225Y	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	225	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						AGGATTGAAAGAGCAGGTGCT	0.488													16	24					1.62849e-17	1.87748e-17	0.004007	1	0
CRY1	1407	broad.mit.edu	37	12	107395084	107395084	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:107395084G>A	uc001tmi.3	-	5	1517	c.658C>T	c.(658-660)CGT>TGT	p.R220C		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	220	FAD-binding.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						CTTTCCAAACGAGTAAGTGCT	0.338													16	25					0	0	0.007413	0	0
BTBD11	121551	broad.mit.edu	37	12	108013806	108013806	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:108013806C>T	uc001tmk.1	+	11	3017	c.2496C>T	c.(2494-2496)ATC>ATT	p.I832I	BTBD11_uc009zut.1_Silent_p.I713I|BTBD11_uc001tmj.2_Silent_p.I832I|BTBD11_uc001tml.1_Silent_p.I369I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	832	ANK 5.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						CTTTGCGGATCGCCTTCCAGC	0.443													4	19					0	0	0.014758	0	0
GIT2	9815	broad.mit.edu	37	12	110426860	110426860	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:110426860C>T	uc001tps.2	-	4	478	c.313G>A	c.(313-315)GAA>AAA	p.E105K	GIT2_uc001tpq.2_Missense_Mutation_p.E105K|GIT2_uc001tpv.2_Missense_Mutation_p.E105K|GIT2_uc001tpu.2_Missense_Mutation_p.E105K|GIT2_uc001tpt.2_Missense_Mutation_p.E105K|GIT2_uc010sxu.1_Missense_Mutation_p.E43K|GIT2_uc001tpw.2_Missense_Mutation_p.E105K|GIT2_uc010sxv.1_Missense_Mutation_p.E105K	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	105	Arf-GAP.				regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CTGATGAATTCCGCTTTATTG	0.438													26	96					0	0	0.005443	0	0
NAA25	80018	broad.mit.edu	37	12	112467425	112467426	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:112467425_112467426CC>TT	uc001ttm.2	-	24	2848_2849	c.2828_2829GG>AA	c.(2827-2829)GGG>GAA	p.G943E	NAA25_uc001ttn.3_RNA	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	943						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TCTGCACCTTCCCTTGCACAGT	0.386													5	17					0	0	0.004672	0	0
DTX1	1840	broad.mit.edu	37	12	113532915	113532915	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:113532915G>A	uc001tuk.1	+	7	1791	c.1455G>A	c.(1453-1455)GGG>GGA	p.G485G		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	485					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						AGCCGCCTGGGAAGATGGAGT	0.642													12	30					0	0	0.010729	0	0
TBX5	6910	broad.mit.edu	37	12	114793375	114793375	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:114793375C>T	uc001tvo.2	-	9	2014	c.1519G>A	c.(1519-1521)GGA>AGA	p.G507R	TBX5_uc001tvp.2_Missense_Mutation_p.G507R|TBX5_uc001tvq.2_Missense_Mutation_p.G457R	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	507				PRTLSPHQYHSVHGVGMVPEWSDNS -> QGLYPLISTTLC TELAWCRVERQ (in Ref. 1; CAA70592).	cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		ATGCCAACTCCGTGCACAGAG	0.478													6	29					0	0	0.001168	0	0
RNFT2	84900	broad.mit.edu	37	12	117178899	117178899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:117178899G>A	uc009zwn.2	+	3	316	c.83G>A	c.(82-84)AGA>AAA	p.R28K	RNFT2_uc001twb.3_Missense_Mutation_p.R28K|RNFT2_uc001twa.3_5'UTR	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	28	Extracellular (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		CCACCTGAAAGGTAGGCATCC	0.522													4	4					0	0	0.009096	0	0
NOS1	4842	broad.mit.edu	37	12	117703256	117703256	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:117703256C>T	uc001twm.1	-	12	2687	c.2001G>A	c.(1999-2001)ATG>ATA	p.M667I		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	667					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ACTCATTCTCCATGTGCTTAA	0.597													5	6					0	0	0.001168	0	0
CIT	11113	broad.mit.edu	37	12	120151086	120151086	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:120151086C>T	uc001txi.1	-	34	4428	c.4375G>A	c.(4375-4377)GGA>AGA	p.G1459R	CIT_uc001txh.1_Missense_Mutation_p.G978R|CIT_uc001txj.1_Missense_Mutation_p.G1501R	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1459	PH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CCTTGCTGTCCTCGTTTGTTA	0.453													63	62					0	0	0.014410	0	0
ANAPC5	51433	broad.mit.edu	37	12	121779811	121779811	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:121779811G>T	uc001uag.2	-	5	774	c.652C>A	c.(652-654)CAA>AAA	p.Q218K	ANAPC5_uc001uah.2_Missense_Mutation_p.Q119K	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	218					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CATACCTGTTGAGAAAGAAAA	0.378													29	114					2.20474e-14	2.53091e-14	0.017118	1	0
RHOF	54509	broad.mit.edu	37	12	122219098	122219099	+	Splice_Site	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:122219098_122219099CC>TT	uc001ubb.2	-	3	282	c.227_splice	c.e3-1	p.G76_splice	TMEM120B_uc001ubc.3_3'UTR|TMEM120B_uc009zxh.2_3'UTR|TMEM120B_uc001uba.1_Intron|RHOF_uc001ubd.3_Splice_Site_p.G76_splice	NM_019034	NP_061907	Q9HBH0	RHOF_HUMAN	ras homolog gene family, member F precursor						actin filament organization|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity			ovary(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;4.38e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.223)		GTCTTCTTGCCCTGAAAGCACA	0.54													16	8					0	0	0.004672	0	0
BRI3BP	140707	broad.mit.edu	37	12	125509589	125509589	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:125509589C>T	uc001uha.1	+	3	512	c.369C>T	c.(367-369)GCC>GCT	p.A123A		NM_080626	NP_542193	Q8WY22	BRI3B_HUMAN	BRI3-binding protein	123						integral to membrane|mitochondrial outer membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.35e-05)|Epithelial(86;0.000426)|all cancers(50;0.00576)		GCAGCCCGGCCCGCGCGCTCC	0.652													7	12					0	0	0.003080	0	0
TMEM132B	114795	broad.mit.edu	37	12	126128651	126128651	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:126128651G>A	uc001uhe.1	+	6	1460	c.1452G>A	c.(1450-1452)GTG>GTA	p.V484V	TMEM132B_uc001uhf.1_5'UTR	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	484	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCATTTTTGTGAATGGGAAGG	0.468													12	27					0	0	0.016723	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138174	126138174	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:126138174G>A	uc001uhe.1	+	9	2163	c.2155G>A	c.(2155-2157)GAT>AAT	p.D719N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D231N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	719	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGACATTTACGATCCTAAGGA	0.403													20	47					0	0	0.008871	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138367	126138367	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:126138367G>A	uc001uhe.1	+	9	2356	c.2348G>A	c.(2347-2349)GGA>GAA	p.G783E	TMEM132B_uc001uhf.1_Missense_Mutation_p.G295E	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	783	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTGGGTAAAGGAAATGTCAAG	0.433													9	33					0	0	0.004482	0	0
SFRS8	6433	broad.mit.edu	37	12	132212883	132212883	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:132212883C>T	uc001uja.1	+	7	1131	c.991C>T	c.(991-993)CGT>TGT	p.R331C	SFRS8_uc010tbn.1_Missense_Mutation_p.R331C|SFRS8_uc001ujb.1_Missense_Mutation_p.R124C|SFRS8_uc001uiz.1_Missense_Mutation_p.R205C	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	331					mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		AGCACTTGTTCGTAAGGCACA	0.552													9	35					0	0	0.006214	0	0
MMP17	4326	broad.mit.edu	37	12	132325329	132325329	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:132325329T>C	uc001ujc.1	+	4	733	c.634T>C	c.(634-636)TTC>CTC	p.F212L	MMP17_uc001ujd.1_Missense_Mutation_p.F128L	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	212					proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CCACGCCTTCTTCCCCGGCCA	0.701													8	14					0	0	0.006214	0	0
GOLGA3	2802	broad.mit.edu	37	12	133381503	133381503	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:133381503G>A	uc001ukz.1	-	7	1955	c.1396C>T	c.(1396-1398)CTG>TTG	p.L466L	GOLGA3_uc001ula.1_Silent_p.L466L|GOLGA3_uc001ulb.2_Silent_p.L466L	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	466	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		TCCGAGCTCAGCGAATCCTGC	0.632													26	31					0	0	0.004656	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19622217	19622217	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:19622217C>T	uc001umb.1	-	10		c.3594G>A				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TGCCTAGTTTCAACCTCTTTT	0.542													21	41					0	0	0.014323	0	0
XPO4	64328	broad.mit.edu	37	13	21373389	21373389	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:21373389G>A	uc001unq.3	-	16	2273	c.2237C>T	c.(2236-2238)CCT>CTT	p.P746L		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	746					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		CCTCTGCACAGGACTTGACAA	0.438													48	128					0	0	0.014410	0	0
ATP12A	479	broad.mit.edu	37	13	25280515	25280515	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:25280515G>A	uc001upp.2	+	15	2270	c.2083G>A	c.(2083-2085)GAG>AAG	p.E695K	ATP12A_uc010aaa.2_Missense_Mutation_p.E701K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	695	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	ACAGCTGGATGAGATCTTAGC	0.572													7	19					0	0	0.001984	0	0
SHISA2	387914	broad.mit.edu	37	13	26620776	26620776	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:26620776C>T	uc001uqm.1	-	2	848	c.763G>A	c.(763-765)GAC>AAC	p.D255N		NM_001007538	NP_001007539	Q6UWI4	SHSA2_HUMAN	shisa homolog 2 precursor	255	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2						GGCACAGAGTCGTGCTGCACC	0.567													20	21					0	0	0.008871	0	0
FLT1	2321	broad.mit.edu	37	13	28963935	28963935	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:28963935C>T	uc001usb.3	-	13	2252	c.1967G>A	c.(1966-1968)AGA>AAA	p.R656K	FLT1_uc010aar.1_Missense_Mutation_p.R656K|FLT1_uc001usc.3_Missense_Mutation_p.R656K|FLT1_uc010aas.1_RNA|FLT1_uc010aat.1_Missense_Mutation_p.R139K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	656	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GTGCTCACCTCTGATTGTAAT	0.403													5	56					0	0	0.014758	0	0
FRY	10129	broad.mit.edu	37	13	32776087	32776087	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:32776087C>T	uc001utx.2	+	30	4252	c.3756C>T	c.(3754-3756)CCC>CCT	p.P1252P	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GGAACTATCCCTTCGACATAG	0.393													10	51					0	0	0.010729	0	0
NBEA	26960	broad.mit.edu	37	13	36223862	36223862	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:36223862T>C	uc001uvb.2	+	51	7984	c.7778T>C	c.(7777-7779)TTT>TCT	p.F2593S	NBEA_uc010abi.2_Missense_Mutation_p.F1249S|NBEA_uc010tee.1_Missense_Mutation_p.F386S|NBEA_uc010tef.1_Missense_Mutation_p.F386S|NBEA_uc001uvd.2_Missense_Mutation_p.F171S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2593						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GTGCTGAAGTTTCCTTCAAAT	0.488													25	71					0	0	0.003954	0	0
TRPC4	7223	broad.mit.edu	37	13	38211639	38211639	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:38211639C>T	uc001uws.2	-	11	2570	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	TRPC4_uc010abv.2_Missense_Mutation_p.E359K|TRPC4_uc001uwt.2_Missense_Mutation_p.E779K|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E606K|TRPC4_uc010abx.2_Missense_Mutation_p.E784K|TRPC4_uc010aby.2_Missense_Mutation_p.E714K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	779	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCACTCTTTTCATCTGAGTCT	0.423													18	19					0	0	0.006122	0	0
TRPC4	7223	broad.mit.edu	37	13	38266368	38266368	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:38266368G>A	uc001uws.2	-	4	1237	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	TRPC4_uc010abv.2_Intron|TRPC4_uc001uwt.2_Silent_p.F334F|TRPC4_uc010tey.1_Silent_p.F334F|TRPC4_uc010abw.2_Silent_p.F161F|TRPC4_uc010abx.2_Silent_p.F334F|TRPC4_uc010aby.2_Silent_p.F334F	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	334	Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GTCCTATTATGAAACATGTCA	0.473													7	31					0	0	0.003080	0	0
FREM2	341640	broad.mit.edu	37	13	39343797	39343797	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:39343797C>T	uc001uwv.2	+	4	5802	c.5493C>T	c.(5491-5493)GGC>GGT	p.G1831G	FREM2_uc001uww.2_5'UTR	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1831	Calx-beta 1.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TCAACCCAGGCCAGACCAGGG	0.507													11	14					0	0	0.010729	0	0
DGKH	160851	broad.mit.edu	37	13	42729877	42729877	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:42729877C>T	uc001uyl.1	+	5	585	c.564C>T	c.(562-564)TTC>TTT	p.F188F	DGKH_uc010tfh.1_Silent_p.F188F|DGKH_uc001uym.1_Silent_p.F188F|DGKH_uc010tfi.1_Missense_Mutation_p.S21F|DGKH_uc010tfj.1_Silent_p.F43F|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Silent_p.F43F|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	188	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GACCCACCTTCTGTAACGTGT	0.517													18	15					0	0	0.006122	0	0
SPERT	220082	broad.mit.edu	37	13	46288366	46288366	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:46288366G>A	uc001van.1	+	3	1286	c.1206G>A	c.(1204-1206)GAG>GAA	p.E402E	SPERT_uc001vao.2_Silent_p.E366E	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	402	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		CCCTGTGGGAGAACAACAAGC	0.597													5	13					0	0	0.001168	0	0
SIAH3	283514	broad.mit.edu	37	13	46357646	46357646	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:46357646C>T	uc001vap.2	-	2	764	c.682G>A	c.(682-684)GTG>ATG	p.V228M		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	228					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						TCCGTAATCACCGAGTCCACG	0.612													7	23					0	0	0.003080	0	0
SETDB2	83852	broad.mit.edu	37	13	50065877	50065877	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:50065877A>T	uc001vcz.2	+	15	2958	c.2052A>T	c.(2050-2052)AAA>AAT	p.K684N	SETDB2_uc001vda.2_Missense_Mutation_p.K672N	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	684	SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		GGTATGTGAAAGCAAGAACAG	0.323													12	17					0	0	0.016723	0	0
THSD1	55901	broad.mit.edu	37	13	52952722	52952722	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:52952722C>T	uc001vgo.2	-	5	1928	c.1383G>A	c.(1381-1383)AAG>AAA	p.K461K	THSD1_uc001vgp.2_Silent_p.K408K|THSD1_uc010tgz.1_Silent_p.K82K|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	461	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		CGTCCGAGTTCTTCCGGAAGC	0.642													14	19					0	0	0.002450	0	0
LECT1	11061	broad.mit.edu	37	13	53307392	53307392	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:53307392C>T	uc001vhf.2	-	3	427	c.316G>A	c.(316-318)GGA>AGA	p.G106R	LECT1_uc001vhg.2_Missense_Mutation_p.G106R|LECT1_uc001vhh.2_Missense_Mutation_p.G133R	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	106	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		TCTTCAGCTCCACTTCCCATT	0.383													11	55					0	0	0.008291	0	0
TDRD3	81550	broad.mit.edu	37	13	61103108	61103108	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:61103108C>T	uc001via.2	+	11	2258	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	TDRD3_uc010aef.2_Silent_p.F315F|TDRD3_uc001vhz.3_Silent_p.F490F|TDRD3_uc010aeg.2_Silent_p.F583F|TDRD3_uc001vib.3_Silent_p.F489F	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	490					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		GTAATAGTTTCATTGGTGTTC	0.348													6	10					0	0	0.001168	0	0
KLHL1	57626	broad.mit.edu	37	13	70681625	70681625	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:70681625C>T	uc001vip.2	-	1	1001	c.207G>A	c.(205-207)TGG>TGA	p.W69*	KLHL1_uc010thm.1_Nonsense_Mutation_p.W69*|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	69	Ser-rich.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		aagGCTTCTTCCAGAAAGTGC	0.443													8	30					0	0	0.003080	0	0
DACH1	1602	broad.mit.edu	37	13	72053391	72053391	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:72053391C>T	uc010thn.1	-	9	2203	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K	DACH1_uc010tho.1_Missense_Mutation_p.E446K|DACH1_uc010thp.1_Missense_Mutation_p.E392K	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	646	DACHbox-C.|Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TCAGTTTTTTCCAGTTGGACC	0.373													18	27					0	0	0.010504	0	0
RBM26	64062	broad.mit.edu	37	13	79916915	79916915	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:79916915C>T	uc001vkz.2	-	17	2331	c.2317G>A	c.(2317-2319)GCA>ACA	p.A773T	RBM26_uc001vky.2_Missense_Mutation_p.A744T|RBM26_uc001vla.2_Missense_Mutation_p.A747T|RBM26_uc010tia.1_Missense_Mutation_p.A128T|RBM26_uc001vkx.2_Missense_Mutation_p.A483T	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	771	Potential.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		ATTATTTCTGCTTTATCTTCA	0.303													31	18					0	0	0.007291	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368316	86368316	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:86368316C>T	uc001vll.1	-	2	2787	c.2328G>A	c.(2326-2328)AGG>AGA	p.R776R	SLITRK6_uc010afe.1_Silent_p.R229R	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	776	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CAATGTTTTTCCTTAGGTATT	0.413													34	35					0	0	0.015359	0	0
ABCC4	10257	broad.mit.edu	37	13	95715076	95715076	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:95715076G>A	uc001vmd.3	-	26	3367	c.3248C>T	c.(3247-3249)TCC>TTC	p.S1083F	ABCC4_uc010afj.2_5'UTR|ABCC4_uc010afk.2_Missense_Mutation_p.S1036F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1083	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TGAGATGAGGGAACTTTTTCC	0.403													16	46					0	0	0.006122	0	0
NALCN	259232	broad.mit.edu	37	13	102051387	102051387	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:102051387G>A	uc001vox.1	-	2	280	c.91C>T	c.(91-93)CTC>TTC	p.L31F	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.L31F|NALCN_uc001vpa.2_Missense_Mutation_p.L31F	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	31	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TTAATCCAGAGGATGTCAGCA	0.423													8	27					0	0	0.003080	0	0
ITGBL1	9358	broad.mit.edu	37	13	102366844	102366844	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:102366844G>A	uc001vpb.2	+	10	1555	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	ITGBL1_uc010agb.2_Missense_Mutation_p.E397K|ITGBL1_uc001vpc.3_Missense_Mutation_p.E305K	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	446	IX.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TATTTCTGGGGAGTTCTGTGA	0.398													27	66					0	0	0.010818	0	0
MYO16	23026	broad.mit.edu	37	13	109318353	109318353	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:109318353A>T	uc001vqt.1	+	2	208	c.82A>T	c.(82-84)ATC>TTC	p.I28F	MYO16_uc010agk.1_Missense_Mutation_p.I50F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	28					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTGTGAGCAAATCAAAGCCTA	0.512													3	21					0	0	0.004672	0	0
COL4A1	1282	broad.mit.edu	37	13	110826973	110826973	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:110826973G>A	uc001vqw.3	-	38	3444	c.3322C>T	c.(3322-3324)CCA>TCA	p.P1108S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1108	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CACCTACCTGGATAGCCAACA	0.502													12	30					0	0	0.013537	0	0
ATP11A	23250	broad.mit.edu	37	13	113487183	113487183	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:113487183G>A	uc001vsi.3	+	14	1493	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K	ATP11A_uc001vsj.3_Missense_Mutation_p.E469K|ATP11A_uc001vsm.1_Missense_Mutation_p.E345K	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	469	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GGAGCGCGAGGAGCTGTTTTT	0.572													34	106					0	0	0.005524	0	0
ZNF828	283489	broad.mit.edu	37	13	115090351	115090351	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr13:115090351C>T	uc010ahb.2	+	3	1363	c.1034C>T	c.(1033-1035)CCT>CTT	p.P345L	ZNF828_uc001vuv.2_Missense_Mutation_p.P345L|ZNF828_uc010tko.1_Missense_Mutation_p.P345L	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	345	Mediates interaction with MAD2L2.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TCTGTGTCTCCTGGACCTTGG	0.517													12	43					0	0	0.013537	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216051	20216051	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:20216051C>T	uc010tkt.1	+	1	465	c.465C>T	c.(463-465)ATC>ATT	p.I155I		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGGGTTTTATCCACTCTATCA	0.498													9	19					0	0	0.004482	0	0
OR4K2	390431	broad.mit.edu	37	14	20344485	20344485	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:20344485C>T	uc001vwh.1	+	1	59	c.59C>T	c.(58-60)TCC>TTC	p.S20F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTCTCTAATTCCTGGGAACTA	0.403													14	94					0	0	0.003163	0	0
OR4K13	390433	broad.mit.edu	37	14	20502829	20502829	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:20502829C>T	uc010tkz.1	-	1	89	c.89G>A	c.(88-90)GGA>GAA	p.G30E		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CACAGAGAATCCCAAGAAGAA	0.398													11	8					0	0	0.010729	0	0
OR4N5	390437	broad.mit.edu	37	14	20612308	20612308	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:20612308T>C	uc010tla.1	+	1	414	c.414T>C	c.(412-414)CCT>CCC	p.P138P		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCATGAACCCTAGAGCCTGCT	0.498													22	88					0	0	0.018920	0	0
METT11D1	64745	broad.mit.edu	37	14	21465017	21465017	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:21465017C>T	uc001vyn.2	+	14	1536	c.1339C>T	c.(1339-1341)CCA>TCA	p.P447S	METT11D1_uc001vym.2_Missense_Mutation_p.P438S|METT11D1_uc001vyo.2_Missense_Mutation_p.S471F|METT11D1_uc001vyp.2_Missense_Mutation_p.P289S|METT11D1_uc001vyq.2_Missense_Mutation_p.S313F|SLC39A2_uc001vyr.2_5'Flank|SLC39A2_uc001vys.2_5'Flank	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	447					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TGCGTTTCCTCCATCTACGGC	0.527													18	14					0	0	0.007413	0	0
CHD8	57680	broad.mit.edu	37	14	21860739	21860739	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:21860739C>A	uc001was.1	-	34	5955	c.5861G>T	c.(5860-5862)AGC>ATC	p.S1954I	CHD8_uc001war.1_Missense_Mutation_p.S1850I|SNORD9_uc001wat.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2233					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TGCCGCTGTGCTGACTGCAGA	0.507													27	73					1.88708e-17	2.17427e-17	0.008361	1	0
CHD8	57680	broad.mit.edu	37	14	21871805	21871805	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:21871805G>A	uc001was.1	-	17	2582	c.2488C>T	c.(2488-2490)CTA>TTA	p.L830L	CHD8_uc001war.1_Silent_p.L726L|CHD8_uc001wav.1_Silent_p.L272L	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1109					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		AATTCTGTTAGGATTTTTTCT	0.388													4	2					0	0	0.009096	0	0
OR4E2	26686	broad.mit.edu	37	14	22133644	22133644	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:22133644C>T	uc010tmd.1	+	1	348	c.348C>T	c.(346-348)ATC>ATT	p.I116I		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTCTGCTGATCATTGTGGCGT	0.453													23	66					0	0	0.016522	0	0
MYH6	4624	broad.mit.edu	37	14	23865587	23865587	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:23865587G>A	uc001wjv.2	-	20	2402	c.2335C>T	c.(2335-2337)CGG>TGG	p.R779W		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	779	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTCTCATCCCGCATCTCCTCC	0.612													10	19					0	0	0.006214	0	0
MYH7	4625	broad.mit.edu	37	14	23899786	23899786	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:23899786C>T	uc001wjx.2	-	11	1088	c.982G>A	c.(982-984)GAG>AAG	p.E328K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	328	Myosin head-like.		E -> G (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCCATGAGCTCCTCAGCGTCA	0.552													6	11					0	0	0.001984	0	0
TGM1	7051	broad.mit.edu	37	14	24724431	24724431	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:24724431C>T	uc001wod.2	-	12	1798	c.1674G>A	c.(1672-1674)GAG>GAA	p.E558E	TGM1_uc010tog.1_Silent_p.E116E	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	558					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	CTGCTGCTGTCTCTACTGCCT	0.622													13	34					0	0	0.016723	0	0
FOXG1	2290	broad.mit.edu	37	14	29237936	29237936	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:29237936C>T	uc001wqe.2	+	1	1650	c.1451C>T	c.(1450-1452)TCC>TTC	p.S484F		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	484					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GGGTCTTCTTCCAACCCTTTA	0.403													9	15					0	0	0.010729	0	0
EAPP	55837	broad.mit.edu	37	14	35005309	35005309	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:35005309G>A	uc001wsd.1	-	2	356	c.247C>T	c.(247-249)CTG>TTG	p.L83L		NM_018453	NP_060923	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	83					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				ovary(1)	1	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		CCAGTTCCCAGAGAGGATAAC	0.234													5	6					0	0	0.014758	0	0
SOS2	6655	broad.mit.edu	37	14	50641269	50641269	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:50641269G>A	uc001wxs.3	-	8	1069	c.971C>T	c.(970-972)TCC>TTC	p.S324F	SOS2_uc010tql.1_Intron|SOS2_uc001wxt.2_Missense_Mutation_p.S12F	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	324	DH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					ATCAGCAATGGACTGCAAAGC	0.403													3	8					0	0	0.004672	0	0
NIN	51199	broad.mit.edu	37	14	51219250	51219250	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:51219250G>C	uc001wym.2	-	21	5127	c.4936C>G	c.(4936-4938)CGT>GGT	p.R1646G	NIN_uc001wyi.2_Missense_Mutation_p.R1646G|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.R933G|NIN_uc010tqp.1_Missense_Mutation_p.R1652G|NIN_uc001wyo.2_Missense_Mutation_p.R1646G	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1646	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					ACTTTACAACGTTCCAGTTCT	0.393			T	PDGFRB	MPD								84	88					0	0	0.014410	0	0
TMX1	81542	broad.mit.edu	37	14	51716235	51716235	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:51716235C>T	uc001wza.3	+	6	664	c.539C>T	c.(538-540)TCA>TTA	p.S180L	TMX1_uc010aoa.2_Missense_Mutation_p.S96L	NM_030755	NP_110382	Q9H3N1	TMX1_HUMAN	thioredoxin domain containing 1 precursor	180	Extracellular (Potential).				anti-apoptosis|cell proliferation|cell redox homeostasis|DNA replication|electron transport chain|ER to Golgi vesicle-mediated transport|leukocyte activation|positive regulation of growth|positive regulation of transcription, DNA-dependent|response to stress|signal transduction	endoplasmic reticulum membrane|integral to membrane|membrane fraction	arsenate reductase (thioredoxin) activity|disulfide oxidoreductase activity				0						GTGTGGGGATCATATACTGTT	0.313													33	106					0	0	0.019004	0	0
TXNDC16	57544	broad.mit.edu	37	14	52899269	52899269	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:52899269G>A	uc001wzs.2	-	21	2680	c.2231C>T	c.(2230-2232)CCA>CTA	p.P744L	TXNDC16_uc010tqu.1_Missense_Mutation_p.P739L|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	744					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					ATCATAAGCTGGAAGAGGAGG	0.378													12	13					0	0	0.016723	0	0
SYT16	83851	broad.mit.edu	37	14	62462960	62462960	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:62462960G>A	uc001xfu.1	+	1	420	c.223G>A	c.(223-225)GAT>AAT	p.D75N	SYT16_uc010tsd.1_Missense_Mutation_p.D75N	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	75										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ACAAGACAATGATTGGAGTCA	0.368													22	69					0	0	0.010504	0	0
KCNH5	27133	broad.mit.edu	37	14	63453887	63453887	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:63453887C>T	uc001xfx.2	-	5	503	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	KCNH5_uc001xfy.2_Missense_Mutation_p.R151Q|KCNH5_uc001xfz.1_Missense_Mutation_p.R93Q|KCNH5_uc001xga.2_Missense_Mutation_p.R93Q	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	151	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CCGTGTCAATCGGGCAAATTT	0.378													17	39					0	0	0.008871	0	0
SYNE2	23224	broad.mit.edu	37	14	64476688	64476688	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:64476688G>A	uc001xgm.2	+	32	4812	c.4582G>A	c.(4582-4584)GAA>AAA	p.E1528K	SYNE2_uc001xgl.2_Missense_Mutation_p.E1528K	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1528	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TCTTAGTCTTGAACAATGTGG	0.328													9	15					0	0	0.004482	0	0
SYNE2	23224	broad.mit.edu	37	14	64574244	64574244	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:64574244C>T	uc001xgm.2	+	65	12758	c.12528C>T	c.(12526-12528)TCC>TCT	p.S4176S	SYNE2_uc001xgl.2_Silent_p.S4176S|SYNE2_uc010apy.2_Silent_p.S561S|SYNE2_uc010apz.1_Silent_p.S68S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4176	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CTGATAATTCCATGGCACAAA	0.458													34	96					0	0	0.017118	0	0
SPTB	6710	broad.mit.edu	37	14	65253161	65253161	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:65253161C>T	uc001xht.2	-	15	3576	c.3522G>A	c.(3520-3522)CAG>CAA	p.Q1174Q	SPTB_uc001xhr.2_Silent_p.Q1174Q|SPTB_uc001xhs.2_Silent_p.Q1174Q|SPTB_uc001xhu.2_Silent_p.Q1174Q	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1174	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGGCATCTTTCTGGAACTCCT	0.617													18	33					0	0	0.004990	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72197010	72197010	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:72197010C>A	uc001xms.2	+	18	5264	c.4916C>A	c.(4915-4917)TCG>TAG	p.S1639*	SIPA1L1_uc001xmt.2_Nonsense_Mutation_p.S1618*|SIPA1L1_uc001xmu.2_Nonsense_Mutation_p.S1618*|SIPA1L1_uc001xmv.2_Nonsense_Mutation_p.S1639*|SIPA1L1_uc010ttm.1_Nonsense_Mutation_p.S1093*|SIPA1L1_uc001xmw.2_Nonsense_Mutation_p.S404*	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1639					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GGAATGAAATCGCTGCATGGT	0.567													24	19					3.65163e-15	4.1996e-15	0.006320	1	0
RGS6	9628	broad.mit.edu	37	14	72939580	72939580	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:72939580G>A	uc001xna.3	+	9	1060	c.537G>A	c.(535-537)AAG>AAA	p.K179K	RGS6_uc010ttn.1_Silent_p.K179K|RGS6_uc001xmx.3_Silent_p.K179K|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.K179K|RGS6_uc010ttp.1_Silent_p.K110K|RGS6_uc001xmz.1_Silent_p.K40K|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	179					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		ACTCTTTCAGGATTGACCGGA	0.448													22	89					0	0	0.018920	0	0
DNAL1	83544	broad.mit.edu	37	14	74154009	74154009	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:74154009T>A	uc001xoq.3	+	6	477	c.312T>A	c.(310-312)TTT>TTA	p.F104L	DNAL1_uc010aru.2_Missense_Mutation_p.F65L|DNAL1_uc010arv.2_RNA	NM_031427	NP_113615	Q4LDG9	DNAL1_HUMAN	axonemal dynein light chain 1	104	LRR 3.										0				BRCA - Breast invasive adenocarcinoma(234;0.00384)|KIRC - Kidney renal clear cell carcinoma(182;0.095)		CCTACAATTTTATTGAGAAGT	0.363													11	33					0	0	0.013537	0	0
C14orf45	80127	broad.mit.edu	37	14	74489674	74489674	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:74489674C>T	uc010tup.1	+	2	235	c.112C>T	c.(112-114)CTT>TTT	p.L38F		NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	38											0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		CAATGCCTCCCTTTGGGAGGC	0.413													5	14					0	0	0.014758	0	0
ESRRB	2103	broad.mit.edu	37	14	76948420	76948420	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:76948420G>C	uc001xsq.1	+	4	643	c.576G>C	c.(574-576)GAG>GAC	p.E192D	ESRRB_uc001xsr.2_Missense_Mutation_p.E192D|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	192						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		TGGACTCAGAGAGCAGCCCAT	0.532													10	7					0	0	0.013537	0	0
NRXN3	9369	broad.mit.edu	37	14	79434617	79434617	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:79434617T>C	uc001xun.2	+	11	2442	c.1951T>C	c.(1951-1953)TTG>CTG	p.L651L	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.L776L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1024	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		ATCAGTGGACTTGAATGGACG	0.512													19	21					0	0	0.008871	0	0
FLRT2	23768	broad.mit.edu	37	14	86087963	86087963	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:86087963C>T	uc001xvr.2	+	2	872	c.105C>T	c.(103-105)GCC>GCT	p.A35A	FLRT2_uc010atd.2_Silent_p.A35A	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	35					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		AACTCCTGGCCTGCCCTAGTG	0.547													13	49					0	0	0.003163	0	0
KCNK10	54207	broad.mit.edu	37	14	88729767	88729767	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:88729767C>T	uc001xwo.2	-	2	623	c.166G>A	c.(166-168)GAA>AAA	p.E56K	KCNK10_uc001xwm.2_Missense_Mutation_p.E61K|KCNK10_uc001xwn.2_Missense_Mutation_p.E61K	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	56	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GAGGTGCCTTCCATCCTGGCT	0.617													23	57					0	0	0.016522	0	0
KCNK10	54207	broad.mit.edu	37	14	88729835	88729835	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:88729835G>A	uc001xwo.2	-	2	555	c.98C>T	c.(97-99)CCG>CTG	p.P33L	KCNK10_uc001xwm.2_Missense_Mutation_p.P38L|KCNK10_uc001xwn.2_Missense_Mutation_p.P38L	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	33	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGCCGGAGCCGGGGGTTGCCC	0.647													36	35					0	0	0.007835	0	0
PTPN21	11099	broad.mit.edu	37	14	88946640	88946640	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:88946640C>T	uc001xwv.3	-	13	1466	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N	PTPN21_uc010twc.1_Missense_Mutation_p.D175N	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	379						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						TGGGCTCTATCCAAGCTTGTC	0.438													24	26					0	0	0.007291	0	0
TDP1	55775	broad.mit.edu	37	14	90429758	90429758	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:90429758G>C	uc001xxy.2	+	3	599	c.300G>C	c.(298-300)ATG>ATC	p.M100I	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.M100I|TDP1_uc010atn.2_Missense_Mutation_p.M100I|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.M100I|TDP1_uc001xyc.1_Missense_Mutation_p.M100I	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	100					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		AACCAGAAATGCCGCAGAAGC	0.512								Repair_of_DNA-protein_crosslinks					8	58					0	0	0.003080	0	0
TTC7B	145567	broad.mit.edu	37	14	91155911	91155911	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:91155911C>T	uc001xyp.2	-	7	1045	c.923G>A	c.(922-924)CGG>CAG	p.R308Q	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	308							binding			ovary(2)	2		Melanoma(154;0.222)				ACGGGCTCTCCGAGTGAGAGT	0.502													9	11					0	0	0.006214	0	0
CATSPERB	79820	broad.mit.edu	37	14	92159566	92159566	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:92159566C>T	uc001xzs.1	-	9	875	c.735G>A	c.(733-735)GTG>GTA	p.V245V		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	245	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AAACCATATCCACCAATGAAA	0.343													26	29					0	0	0.006320	0	0
FAM181A	90050	broad.mit.edu	37	14	94395403	94395403	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:94395403G>A	uc001ybz.1	+	3	1265	c.958G>A	c.(958-960)GAT>AAT	p.D320N	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.D258N|FAM181A_uc001yca.1_Missense_Mutation_p.D258N	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	320											0						CCTCTGCAAGGATGTGGACGG	0.662													17	17					0	0	0.010504	0	0
PPP4R4	57718	broad.mit.edu	37	14	94700066	94700066	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:94700066G>A	uc001ycs.1	+	6	747	c.593G>A	c.(592-594)GGA>GAA	p.G198E		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	198						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AAAATTTTAGGAAAATTGACC	0.313													13	32					0	0	0.007413	0	0
SERPINA6	866	broad.mit.edu	37	14	94780718	94780718	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:94780718G>T	uc001ycv.2	-	2	372	c.268C>A	c.(268-270)CTC>ATC	p.L90I	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	90					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	AGGCCCTGGAGAAGCTGGGCC	0.547													8	11					0.00307968	0.00349666	0.003080	1	0
BDKRB1	623	broad.mit.edu	37	14	96730652	96730652	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:96730652C>T	uc001yfh.2	+	3	841	c.633C>T	c.(631-633)TTC>TTT	p.F211F	BDKRB1_uc010avn.2_Silent_p.F211F	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	211	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		TTCTGGGTTTCCTCCTACCAC	0.587													22	24					0	0	0.016522	0	0
HHIPL1	84439	broad.mit.edu	37	14	100126630	100126630	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:100126630G>A	uc010avs.2	+	5	1454	c.1389G>A	c.(1387-1389)CCG>CCA	p.P463P	HHIPL1_uc001ygl.1_Silent_p.P463P	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	463					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				ACTTGCTGCCGATTTTCGCCT	0.627													12	24					0	0	0.016723	0	0
WARS	7453	broad.mit.edu	37	14	100820025	100820025	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:100820025C>T	uc001yhf.1	-	5	808	c.724G>A	c.(724-726)GGG>AGG	p.G242R	WARS_uc001yhe.1_Missense_Mutation_p.G48R|WARS_uc001yhg.1_Missense_Mutation_p.G242R|WARS_uc001yhh.1_Missense_Mutation_p.G242R|WARS_uc001yhi.1_Missense_Mutation_p.G201R|WARS_uc001yhj.1_Missense_Mutation_p.G201R|WARS_uc001yhk.1_Missense_Mutation_p.G201R|WARS_uc001yhl.1_Missense_Mutation_p.G242R	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	242					angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	TCTCCTTACCCCATGTAGTCC	0.458													13	13					0	0	0.002450	0	0
ZNF839	55778	broad.mit.edu	37	14	102792712	102792712	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:102792712C>T	uc001ylo.2	+	2	681	c.331C>T	c.(331-333)CCA>TCA	p.P111S	ZNF839_uc010awk.1_Missense_Mutation_p.P227S|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Missense_Mutation_p.P111S|ZNF839_uc001ylr.2_Missense_Mutation_p.P111S	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	111						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTCAGCACATCCATTTATTTC	0.458													3	5					0	0	0.004672	0	0
XRCC3	7517	broad.mit.edu	37	14	104165914	104165914	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:104165914C>T	uc001yny.3	-	8	942	c.562_splice	c.e8-1	p.D188_splice	KLC1_uc010tyf.1_Intron|KLC1_uc001yno.2_Intron|KLC1_uc001yns.2_Intron|XRCC3_uc001ynx.3_Splice_Site_p.D188_splice|XRCC3_uc001ynz.3_Splice_Site_p.D188_splice|XRCC3_uc001yoa.3_Splice_Site_p.D188_splice	NM_005432	NP_005423	O43542	XRCC3_HUMAN	X-ray repair cross complementing protein 3						DNA recombination|DNA repair	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0		Melanoma(154;0.155)|all_epithelial(191;0.19)		Epithelial(152;0.239)		ACAAGGTGTCCTGTGGGGACA	0.587								Direct_reversal_of_damage|Homologous_recombination					3	16					0	0	0.004672	0	0
AHNAK2	113146	broad.mit.edu	37	14	105407826	105407826	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:105407826T>C	uc010axc.1	-	7	14082	c.13962A>G	c.(13960-13962)GGA>GGG	p.G4654G	AHNAK2_uc001ypx.2_Silent_p.G4554G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4654						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATGTAACATTTCCTTCGATTT	0.428													18	19					0	0	0.006122	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408780	105408780	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:105408780G>A	uc010axc.1	-	7	13128	c.13008C>T	c.(13006-13008)TCC>TCT	p.S4336S	AHNAK2_uc001ypx.2_Silent_p.S4236S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4336						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCCTGCATGGAGGGGAGGC	0.622													24	110					0	0	0.004656	0	0
ADAM6	8755	broad.mit.edu	37	14	106173485	106173485	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:106173485G>A	uc010tyt.1	-	3633		c.60413C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						TTTATTCAGGGGTGGGGACAG	0.622													4	23					0	0	0.003080	0	0
ADAM6	8755	broad.mit.edu	37	14	106518850	106518850	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:106518850C>T	uc010tyt.1	-	1629		c.32688G>A								Parts of antibodies, mostly variable regions.												0						AGCCCCAATTCCATGGTGAGT	0.498													42	37					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106733275	106733275	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:106733275C>T	uc010tyt.1	-	547		c.17461G>A								Parts of antibodies, mostly variable regions.												0						GTTTCACCATCTTCAGGATCA	0.522													22	86					0	0	0.018920	0	0
ADAM6	8755	broad.mit.edu	37	14	106967404	106967404	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:106967404C>T	uc010tyt.1	-	201		c.9037G>A								Parts of antibodies, mostly variable regions.												0						TGGAAAAAATCCCTTCCTCAG	0.547													20	23					0	0	0.010504	0	0
ADAM6	8755	broad.mit.edu	37	14	107013057	107013057	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:107013057C>T	uc010tyt.1	-	169		c.8000G>A								Parts of antibodies, mostly variable regions.												0						GCGGCGTATTCTGTTGTCCCA	0.502													23	28					0	0	0.018920	0	0
ATP10A	57194	broad.mit.edu	37	15	25967028	25967028	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:25967028G>A	uc010ayu.2	-	7	1245	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	380	Helical; (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		AATTTCAATGGAAACGTATAA	0.448													25	35					0	0	0.018920	0	0
GABRB3	2562	broad.mit.edu	37	15	26825473	26825473	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:26825473G>A	uc001zaz.2	-	6	817	c.675C>T	c.(673-675)TTC>TTT	p.F225F	GABRB3_uc010uae.1_Silent_p.F140F|GABRB3_uc001zba.2_Silent_p.F225F|GABRB3_uc001zbb.2_Silent_p.F281F	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	225	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CACCTGTGGCGAAGACAACAT	0.572													17	26					0	0	0.008871	0	0
HERC2	8924	broad.mit.edu	37	15	28491205	28491205	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:28491205G>A	uc001zbj.2	-	23	3505	c.3399C>T	c.(3397-3399)CTC>CTT	p.L1133L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1133					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GTTCTGGAAGGAGAACACCTA	0.368													8	17					0	0	0.010729	0	0
CHRNA7	1139	broad.mit.edu	37	15	32460296	32460296	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:32460296G>A	uc001zft.2	+	10	1218	c.1146G>A	c.(1144-1146)GGG>GGA	p.G382G	uc001zfv.1_Intron|CHRNA7_uc010baf.2_Silent_p.G201G|CHRNA7_uc010bak.2_Silent_p.G297G	NM_000746	NP_000737	P36544	ACHA7_HUMAN	cholinergic receptor, nicotinic, alpha 7	382	Cytoplasmic (Potential).				activation of MAPK activity|calcium ion transport|cellular calcium ion homeostasis|memory|negative regulation of tumor necrosis factor production|positive regulation of angiogenesis|positive regulation of cell proliferation|response to hypoxia|response to nicotine	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|beta-amyloid binding|chloride channel regulator activity|nicotinic acetylcholine-activated cation-selective channel activity|protein homodimerization activity|toxin binding			ovary(1)	1		all_lung(180;6.35e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)	Nicotine(DB00184)|Varenicline(DB01273)	CCAGCAACGGGAACCTGCTGT	0.721													10	35					0	0	0.004007	0	0
INO80	54617	broad.mit.edu	37	15	41372018	41372018	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:41372018G>C	uc001zni.2	-	9	1225	c.1012C>G	c.(1012-1014)CGC>GGC	p.R338G	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	338	Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.|DBINO.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						TTGGTGAGGCGGCGGGCACGA	0.527													54	95					0	0	0.014410	0	0
RTF1	23168	broad.mit.edu	37	15	41767775	41767775	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:41767775T>A	uc001zny.2	+	10	1351	c.1339T>A	c.(1339-1341)TTC>ATC	p.F447I		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	447	Plus3.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		AAACCAAGAATTCACCGAAAG	0.428													19	28					0	0	0.012319	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42117477	42117477	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:42117477C>T	uc001zok.3	+	32	4674	c.4388C>T	c.(4387-4389)TCA>TTA	p.S1463L	MAPKBP1_uc001zoj.3_Missense_Mutation_p.S1457L|MAPKBP1_uc010bcj.2_Missense_Mutation_p.S964L|MAPKBP1_uc010bci.2_Missense_Mutation_p.S1180L|MAPKBP1_uc010udb.1_Missense_Mutation_p.S1296L|MAPKBP1_uc010bck.2_Missense_Mutation_p.S674L|MAPKBP1_uc010bcl.2_Missense_Mutation_p.S962L|JMJD7-PLA2G4B_uc010bcm.1_5'Flank|JMJD7-PLA2G4B_uc001zom.2_5'Flank|JMJD7-PLA2G4B_uc001zon.2_5'Flank|JMJD7-PLA2G4B_uc001zoo.3_5'Flank|JMJD7-PLA2G4B_uc010bcn.2_5'Flank	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	1463										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		ACCTTCTCTTCAGTGCGACAG	0.627													14	33					0	0	0.003163	0	0
UBR1	197131	broad.mit.edu	37	15	43244516	43244516	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:43244516G>A	uc001zqq.2	-	45	5032	c.4966C>T	c.(4966-4968)CAC>TAC	p.H1656Y		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1656					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TGAAGTGCGTGAAAAATGCAA	0.468													44	69					0	0	0.013114	0	0
SLC28A2	9153	broad.mit.edu	37	15	45559947	45559947	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:45559947G>A	uc001zva.2	+	12	1217	c.1152G>A	c.(1150-1152)GTG>GTA	p.V384V		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	384					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		ATCCGGAAGTGGAGGAGTCCA	0.547													33	88					0	0	0.005524	0	0
SPATA5L1	79029	broad.mit.edu	37	15	45706921	45706921	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:45706921G>A	uc001zve.2	+	4	1696	c.1587G>A	c.(1585-1587)GTG>GTA	p.V529V	SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	529						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		TCGTTTCAGTGAGTGGAGCTG	0.443													18	35					0	0	0.014323	0	0
C15orf33	196951	broad.mit.edu	37	15	49833904	49833904	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:49833904C>T	uc001zxl.2	-	10	1141	c.847G>A	c.(847-849)GGG>AGG	p.G283R	C15orf33_uc001zxm.2_Missense_Mutation_p.G249R	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	283										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		ATGTTATTCCCTAGATCTTCT	0.299													23	39					0	0	0.014323	0	0
GLDN	342035	broad.mit.edu	37	15	51689759	51689759	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:51689759C>T	uc002aba.2	+	6	950	c.781C>T	c.(781-783)CCT>TCT	p.P261S	GLDN_uc002abb.2_Missense_Mutation_p.P137S	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	261	Extracellular (Potential).|Pro-rich.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AGCCAAAGGCCCTCGGCAGCC	0.617													11	28					0	0	0.008291	0	0
KIAA1370	56204	broad.mit.edu	37	15	52901656	52901656	+	Silent	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:52901656A>T	uc002acg.3	-	6	1608	c.1455T>A	c.(1453-1455)GTT>GTA	p.V485V	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Silent_p.V397V|KIAA1370_uc010ugf.1_Silent_p.V492V	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	485											0				all cancers(107;0.0803)		TCCTTGCAATAACATCTTGCC	0.433													38	72					0	0	0.004878	0	0
UNC13C	440279	broad.mit.edu	37	15	54305795	54305795	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:54305795C>T	uc002ack.2	+	1	695	c.695C>T	c.(694-696)TCC>TTC	p.S232F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	232					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGGTTCAGTTCCTCTGGCTGC	0.433													22	34					0	0	0.012319	0	0
UNC13C	440279	broad.mit.edu	37	15	54860014	54860014	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:54860014G>A	uc002ack.2	+	28	5975	c.5975G>A	c.(5974-5976)GGA>GAA	p.G1992E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1992	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TTTCATGCAGGAGGAAATGGC	0.363													5	5					0	0	0.014758	0	0
UNC13C	440279	broad.mit.edu	37	15	54914599	54914599	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:54914599C>T	uc002ack.2	+	29	6181	c.6181C>T	c.(6181-6183)CAT>TAT	p.H2061Y	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2061	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AACGGGAGATCATAAAGTCAC	0.438													28	40					0	0	0.008361	0	0
DYX1C1	161582	broad.mit.edu	37	15	55783387	55783387	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:55783387T>C	uc002adc.2	-	4	707	c.339A>G	c.(337-339)GAA>GAG	p.E113E	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Silent_p.E113E|DYX1C1_uc002add.2_Silent_p.E113E	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	113					neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		CTTCTGTAGCTTCTTTTGCTC	0.358													22	29					0	0	0.010504	0	0
CGNL1	84952	broad.mit.edu	37	15	57731779	57731779	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:57731779C>T	uc002aeg.2	+	2	1658	c.1582C>T	c.(1582-1584)CCT>TCT	p.P528S	CGNL1_uc010bfw.2_Missense_Mutation_p.P528S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	528	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GAAGACATTTCCTTCGGCCTC	0.453													10	16					0	0	0.006214	0	0
MIR422A	494334	broad.mit.edu	37	15	64163218	64163218	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:64163218C>T	hsa-mir-422a|MI0001444	-			c.1C>T																				0						gtgcttctctcgtgtcctcac	0.204													18	38					0	0	0.008871	0	0
ANKDD1A	348094	broad.mit.edu	37	15	65239695	65239696	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:65239695_65239696CC>TT	uc002aoa.2	+	13	1262_1263	c.1233_1234CC>TT	c.(1231-1236)CTCCGT>CTTTGT	p.R412C	ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.R289C	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	412					signal transduction					ovary(1)	1						CACAGCAGCTCCGTTCTGTGCT	0.584													7	20					0	0	0.004672	0	0
SPG21	51324	broad.mit.edu	37	15	65262507	65262507	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:65262507G>A	uc002aod.2	-	6	599	c.506C>T	c.(505-507)TCA>TTA	p.S169L	SPG21_uc002aoe.2_Missense_Mutation_p.S169L|SPG21_uc010bhb.2_Missense_Mutation_p.S142L|SPG21_uc010bhc.2_Missense_Mutation_p.S15L	NM_001127889	NP_001121361	Q9NZD8	SPG21_HUMAN	spastic paraplegia 21 isoform a	169					cell death	cytosol|endosome membrane|trans-Golgi network transport vesicle	CD4 receptor binding				0						CGGGCCAGATGAAAAATTTCC	0.398													71	145					0	0	0.014410	0	0
MTFMT	123263	broad.mit.edu	37	15	65295427	65295427	+	Silent	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:65295427A>C	uc002aof.3	-	9	1169	c.1143T>G	c.(1141-1143)ACT>ACG	p.T381T		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	381						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	GCATAGCAACAGTTTTTTTCT	0.343													8	9					0	0	0.006214	0	0
CILP	8483	broad.mit.edu	37	15	65490953	65490953	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:65490953G>A	uc002aon.2	-	9	1852	c.1671C>T	c.(1669-1671)TTC>TTT	p.F557F		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	557					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CCTTCTTGTTGAAAGGTAGCA	0.527													17	22					0	0	0.004990	0	0
AAGAB	79719	broad.mit.edu	37	15	67501878	67501878	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:67501878C>T	uc002aqk.3	-	6	645	c.540G>A	c.(538-540)AGG>AGA	p.R180R	AAGAB_uc002aql.2_Silent_p.R71R|AAGAB_uc010uju.1_Silent_p.R71R	NM_024666	NP_078942	Q6PD74	AAGAB_HUMAN	alpha- and gamma-adaptin-binding protein p34	180					protein transport	cytoplasm					0						AGCCTTGGTTCCTATCTGAAA	0.373													53	73					0	0	0.014410	0	0
NOX5	79400	broad.mit.edu	37	15	69335023	69335023	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:69335023C>T	uc002ars.1	+	10	1545	c.1525C>T	c.(1525-1527)CGG>TGG	p.R509W	NOX5_uc002arp.1_Missense_Mutation_p.R491W|NOX5_uc002arq.1_Missense_Mutation_p.R463W|NOX5_uc010bid.1_Missense_Mutation_p.R474W|NOX5_uc002arr.1_Missense_Mutation_p.R481W|NOX5_uc010bie.1_Missense_Mutation_p.R309W|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	509	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCTGCACATTCGGTCCCAAGG	0.567													16	20					0	0	0.004007	0	0
PAQR5	54852	broad.mit.edu	37	15	69672243	69672243	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:69672243C>T	uc002arz.2	+	4	451	c.73C>T	c.(73-75)CTG>TTG	p.L25L	PAQR5_uc002asa.2_Silent_p.L25L	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	25	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						GCAAGGCATCCTGTTCGGCTA	0.537													60	108					0	0	0.014410	0	0
ISLR2	57611	broad.mit.edu	37	15	74425599	74425599	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:74425599C>G	uc002axd.2	+	4	1273	c.504C>G	c.(502-504)GAC>GAG	p.D168E	ISLR2_uc002axe.2_Missense_Mutation_p.D168E|ISLR2_uc010bjg.2_Missense_Mutation_p.D168E|ISLR2_uc010bjf.2_Missense_Mutation_p.D168E	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	168	Extracellular (Potential).|LRR 5.				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GCACCTTCGACGCGCTTAGCG	0.667													31	41					0	0	0.010818	0	0
LMAN1L	79748	broad.mit.edu	37	15	75115900	75115900	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:75115900G>A	uc002ayt.1	+	12	1202	c.1200G>A	c.(1198-1200)AGG>AGA	p.R400R	LMAN1L_uc010bke.1_Silent_p.R388R	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	400	Lumenal (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CCCCGGTTAGGGATGCAGCTG	0.552													21	47					0	0	0.014323	0	0
SGK269	79834	broad.mit.edu	37	15	77471555	77471555	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:77471555G>A	uc002bcm.2	-	3	3022	c.2714C>T	c.(2713-2715)GCT>GTT	p.A905V	SGK269_uc002bcn.2_Missense_Mutation_p.A905V	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	905					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AACTGATTCAGCTTCTGTTGA	0.507													25	40					0	0	0.003954	0	0
RASGRF1	5923	broad.mit.edu	37	15	79310166	79310166	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:79310166G>A	uc002beq.2	-	12	2064	c.1689C>T	c.(1687-1689)ATC>ATT	p.I563I	RASGRF1_uc002bep.2_Silent_p.I563I|RASGRF1_uc010blm.1_Silent_p.I485I|RASGRF1_uc002ber.3_Silent_p.I563I|RASGRF1_uc010unh.1_5'UTR	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	563	PH 2.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						AGGCCACTAGGATGACTGTAA	0.527													29	34					0	0	0.010818	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635064	82635064	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:82635064G>A	uc002bgx.2	-	5		c.516C>T						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TGAAGTAAATGAATTGTGTAG	0.224													3	4					0	0	0.014758	0	0
AKAP13	11214	broad.mit.edu	37	15	86270681	86270681	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:86270681C>T	uc002blv.1	+	29	7244	c.7074C>T	c.(7072-7074)GCC>GCT	p.A2358A	AKAP13_uc002blu.1_Silent_p.A2362A|AKAP13_uc010bnf.1_Silent_p.A979A|AKAP13_uc002blw.1_Silent_p.A823A|AKAP13_uc002blx.1_Silent_p.A603A	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2358	Interaction with ESR1.|Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						ACACCAGAGCCCGAGAATTAA	0.443													3	10					0	0	0.004672	0	0
ANPEP	290	broad.mit.edu	37	15	90347601	90347601	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:90347601C>T	uc002bop.3	-	6	1354	c.1062G>A	c.(1060-1062)ATG>ATA	p.M354I		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	354	Extracellular.|Substrate binding (By similarity).|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CCCAGTTCTCCATGGCGCCGG	0.622													25	22					0	0	0.018920	0	0
MAN2A2	4122	broad.mit.edu	37	15	91449693	91449693	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:91449693C>T	uc010bnz.2	+	6	916	c.801C>T	c.(799-801)CTC>CTT	p.L267L	MAN2A2_uc010boa.2_Silent_p.L309L|MAN2A2_uc002bqc.2_Silent_p.L267L|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	267	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			TTGACCAGCTCATCGAAGGAC	0.577													116	179					0	0	0.014410	0	0
CHD2	1106	broad.mit.edu	37	15	93499875	93499875	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:93499875G>A	uc002bsp.2	+	16	2571	c.1996G>A	c.(1996-1998)GAG>AAG	p.E666K	CHD2_uc002bso.1_Missense_Mutation_p.E666K	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	666	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TATTATGCCGGAGAAGTAAGC	0.428													19	39					0	0	0.007413	0	0
SYNM	23336	broad.mit.edu	37	15	99671130	99671130	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:99671130C>T	uc002bup.2	+	6	2685	c.2565C>T	c.(2563-2565)ATC>ATT	p.I855I	SYNM_uc002buo.2_Silent_p.I855I|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	855	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGATCCACATCGAGGAGGAAT	0.567													21	13					0	0	0.008871	0	0
LASS3	204219	broad.mit.edu	37	15	101019668	101019668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:101019668C>T	uc002bvz.2	-	8	983	c.481G>A	c.(481-483)GAC>AAC	p.D161N	LASS3_uc002bwa.2_Missense_Mutation_p.D172N|LASS3_uc002bwb.2_Missense_Mutation_p.D161N	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	161	TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TCCCATAAGTCATATAGCCAA	0.383													13	23					0	0	0.016723	0	0
TM2D3	80213	broad.mit.edu	37	15	102186926	102186926	+	Splice_Site	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:102186926A>G	uc002bxi.2	-	4	532	c.502_splice	c.e4+1	p.G168_splice	TM2D3_uc010usg.1_Splice_Site_p.G142_splice|TM2D3_uc002bxh.2_Splice_Site_p.G103_splice|TM2D3_uc002bxj.2_Splice_Site_p.G142_splice|TM2D3_uc002bxk.2_Splice_Site_p.G103_splice|TM2D3_uc010ush.1_Silent_p.G168G	NM_078474	NP_510883	Q9BRN9	TM2D3_HUMAN	TM2 domain containing 3 isoform a							integral to membrane				ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ACTCTGACCTACCCAAGCAGT	0.473													13	19					0	0	0.013537	0	0
TARSL2	123283	broad.mit.edu	37	15	102252144	102252144	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr15:102252144G>C	uc002bxm.2	-	5	806	c.751C>G	c.(751-753)CAC>GAC	p.H251D	TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	251					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TAGCACAGGTGGCCTCCATAG	0.468													4	17					0	0	0.009096	0	0
FAM173A	65990	broad.mit.edu	37	16	772508	772508	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:772508G>A	uc002cje.2	+	5	776	c.659G>A	c.(658-660)GGA>GAA	p.G220E		NM_023933	NP_076422	Q9BQD7	F173A_HUMAN	hypothetical protein LOC65990	220						integral to membrane				pancreas(1)	1						GCTGCCCCCGGACCTAGTTCT	0.587													12	10					0	0	0.016723	0	0
CACNA1H	8912	broad.mit.edu	37	16	1254328	1254329	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:1254328_1254329GG>AA	uc002cks.2	+	10	2569_2570	c.2321_2322GG>AA	c.(2320-2322)TGG>TAA	p.W774*	CACNA1H_uc002ckt.2_Nonsense_Mutation_p.W774*	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	774	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GAGCCAGGCTGGATGGGCCGCC	0.693													5	6					0	0	0.004672	0	0
TPSG1	25823	broad.mit.edu	37	16	1272209	1272209	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:1272209C>T	uc002ckw.2	-	5	646	c.644G>A	c.(643-645)GGG>GAG	p.G215E		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	215	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GCAGGCATCCCCGGGGCCCCG	0.692													19	27					0	0	0.006122	0	0
PTX4	390667	broad.mit.edu	37	16	1537825	1537825	+	Silent	SNP	C	T	T	rs142629286	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:1537825C>T	uc010uvf.1	-	2	273	c.273G>A	c.(271-273)TCG>TCA	p.S91S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	96						extracellular region	metal ion binding				0						CCCCCTGCACCGAGGCCTGTG	0.662													31	58					0	0	0.010818	0	0
IFT140	9742	broad.mit.edu	37	16	1642239	1642239	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:1642239G>A	uc002cmb.2	-	6	934	c.572C>T	c.(571-573)TCT>TTT	p.S191F		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	191										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CAAACTTCCAGAACTGCTCTT	0.512													29	41					0	0	0.008361	0	0
HAGH	3029	broad.mit.edu	37	16	1872925	1872925	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:1872925G>A	uc002cna.2	-	2	597	c.190C>T	c.(190-192)CTG>TTG	p.L64L	HAGH_uc002cmz.2_Silent_p.L16L|HAGH_uc010uvp.1_Silent_p.L64L|HAGH_uc002cnb.1_Silent_p.L16L|HAGH_uc010bry.1_Silent_p.L64L	NM_005326	NP_005317	Q16775	GLO2_HUMAN	hydroxyacylglutathione hydrolase isoform 1	64					glutathione biosynthetic process	cytoplasm|mitochondrial matrix|mitochondrial matrix	hydroxyacylglutathione hydrolase activity|zinc ion binding	p.L16V(1)		ovary(1)	1		Hepatocellular(780;0.00335)			Glutathione(DB00143)	TCAATGACCAGGTACATGTAG	0.592													27	53					0	0	0.005443	0	0
ABCA3	21	broad.mit.edu	37	16	2342196	2342196	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:2342196G>A	uc002cpy.1	-	19	3170	c.2458C>T	c.(2458-2460)CTG>TTG	p.L820L	ABCA3_uc010bsk.1_Silent_p.L762L|ABCA3_uc010bsl.1_Silent_p.L820L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	820					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GCAATGCCCAGCTCTTTCTGC	0.483													20	28					0	0	0.016522	0	0
TBC1D24	57465	broad.mit.edu	37	16	2569311	2569311	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:2569311C>T	uc002cqm.2	+	2	1173	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L	ATP6V0C_uc002cqn.2_Missense_Mutation_p.P58S|ATP6V0C_uc002cqo.2_Missense_Mutation_p.P15S|AMDHD2_uc002cqp.2_5'Flank|AMDHD2_uc002cqq.2_5'Flank|AMDHD2_uc010uwc.1_5'Flank|AMDHD2_uc010uwd.1_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	Error:Variant_position_missing_in_Q9ULP9_after_alignment					neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						GTCCATCATCCCAGTGGTCAT	0.597													14	26					0	0	0.016723	0	0
ZNF500	26048	broad.mit.edu	37	16	4815911	4815911	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:4815911C>T	uc002cxp.1	-	2	316	c.69G>A	c.(67-69)CTG>CTA	p.L23L	ZNF500_uc002cxo.1_5'UTR|ZNF500_uc010uxt.1_Silent_p.L23L	NM_021646	NP_067678	O60304	ZN500_HUMAN	zinc finger protein 500	23					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						CCTTCACAATCAGGATCTCTT	0.607													25	40					0	0	0.003954	0	0
NAGPA	51172	broad.mit.edu	37	16	5083627	5083627	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:5083627A>G	uc002cyg.2	-	2	210	c.189T>C	c.(187-189)AGT>AGC	p.S63S	ALG1_uc002cyj.2_5'Flank|NAGPA_uc002cyf.2_5'UTR|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_5'UTR|NAGPA_uc010uxx.1_Silent_p.S63S	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	63	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	GCGGAGGCCAACTCTCGTGCT	0.761													5	11					0	0	0.001168	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857917	9857917	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:9857917C>T	uc002czo.3	-	13	4032	c.3484G>A	c.(3484-3486)GAC>AAC	p.D1162N	GRIN2A_uc010uym.1_Missense_Mutation_p.D1162N|GRIN2A_uc010uyn.1_Missense_Mutation_p.D1005N|GRIN2A_uc002czr.3_Missense_Mutation_p.D1162N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1162	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGCGTGGAGTCCCCCTTGCGG	0.522													39	57					0	0	0.005524	0	0
GRIN2A	2903	broad.mit.edu	37	16	9892237	9892237	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:9892237C>T	uc002czo.3	-	11	2801	c.2253G>A	c.(2251-2253)GGG>GGA	p.G751G	GRIN2A_uc010uym.1_Silent_p.G751G|GRIN2A_uc010uyn.1_Silent_p.G594G|GRIN2A_uc002czr.3_Silent_p.G751G	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	751	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGTACCCACTCCCGATGGTCA	0.522													20	33					0	0	0.008871	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032069	10032069	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:10032069C>T	uc002czo.3	-	3	1302	c.754G>A	c.(754-756)GAT>AAT	p.D252N	GRIN2A_uc010uym.1_Missense_Mutation_p.D252N|GRIN2A_uc010uyn.1_Missense_Mutation_p.D95N|GRIN2A_uc002czr.3_Missense_Mutation_p.D252N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	252	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.D252N(1)		skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CAGAAGAAATCATACCCGGTG	0.517													12	22					0	0	0.013537	0	0
CIITA	4261	broad.mit.edu	37	16	10997604	10997604	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:10997604C>T	uc002dai.3	+	9	922	c.789C>T	c.(787-789)GCC>GCT	p.A263A	CIITA_uc002daj.3_Silent_p.A264A|CIITA_uc002dak.3_Silent_p.A214A|CIITA_uc002dag.2_Silent_p.A263A|CIITA_uc002dah.2_Silent_p.A215A|CIITA_uc010bup.1_Silent_p.A263A	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	263					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TGCCCCAGGCCAGCCAAGTAC	0.592			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								16	30					0	0	0.007413	0	0
MYH11	4629	broad.mit.edu	37	16	15932025	15932025	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:15932025C>T	uc002ddy.2	-	2	192	c.85G>A	c.(85-87)GAC>AAC	p.D29N	MYH11_uc002ddv.2_Missense_Mutation_p.D29N|MYH11_uc002ddw.2_Missense_Mutation_p.D29N|MYH11_uc002ddx.2_Missense_Mutation_p.D29N|MYH11_uc010bvg.2_5'UTR|MYH11_uc002deb.3_Missense_Mutation_p.D29N	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	29	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCGGCCCAGTCAGCCTGGGCC	0.582			T	CBFB	AML								31	48					0	0	0.010818	0	0
ARL6IP1	23204	broad.mit.edu	37	16	18809268	18809268	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:18809268C>T	uc002dfl.1	-	3	338	c.269G>A	c.(268-270)AGA>AAA	p.R90K	ARL6IP1_uc010van.1_Missense_Mutation_p.R61K|ARL6IP1_uc010bvz.1_RNA	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	90						integral to membrane	protein binding				0						GCCAAAAATTCTAGGCGCTAG	0.393													22	43					0	0	0.012319	0	0
COQ7	10229	broad.mit.edu	37	16	19083279	19083279	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:19083279C>T	uc002dfr.2	+	2	163	c.103C>T	c.(103-105)CGC>TGC	p.R35C	COQ7_uc002dfs.2_Missense_Mutation_p.R21C	NM_016138	NP_057222	Q99807	COQ7_HUMAN	COQ7 protein	35					ubiquinone biosynthetic process	mitochondrial inner membrane|nucleus	oxidoreductase activity|transition metal ion binding			skin(1)	1						TGTCAGATTTCGCAGTTCAGG	0.428											OREG0023656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	47					0	0	0.004878	0	0
TMC5	79838	broad.mit.edu	37	16	19475337	19475337	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:19475337C>T	uc002dgc.3	+	8	2225	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	TMC5_uc010vaq.1_Silent_p.F492F|TMC5_uc002dgb.3_Silent_p.F492F|TMC5_uc010var.1_Silent_p.F492F|TMC5_uc002dgd.1_Silent_p.F246F|TMC5_uc002dge.3_Silent_p.F246F|TMC5_uc002dgf.3_Silent_p.F175F|TMC5_uc002dgg.3_Silent_p.F133F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	492	Helical; (Potential).					integral to membrane				skin(1)	1						TGGAGTTTTTCACTGGGGTGG	0.512													19	24					0	0	0.006122	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883979	19883979	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:19883979G>A	uc002dgt.2	-	2	297	c.189C>T	c.(187-189)GCC>GCT	p.A63A	GPRC5B_uc010vav.1_Silent_p.A89A	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	63	Helical; Name=1; (Potential).									lung(1)|breast(1)|skin(1)	3						CGCCCGCCCCGGCCACCGCCT	0.652													12	20					0	0	0.016723	0	0
GPRC5B	51704	broad.mit.edu	37	16	19884007	19884007	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:19884007A>T	uc002dgt.2	-	2	269	c.161T>A	c.(160-162)ATC>AAC	p.I54N	GPRC5B_uc010vav.1_Missense_Mutation_p.I80N	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	54	Extracellular (Potential).									lung(1)|breast(1)|skin(1)	3						AATGCCCCAGATGGCGTCCAG	0.642													11	20					0	0	0.016723	0	0
ACSM2A	123876	broad.mit.edu	37	16	20497973	20497973	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:20497973G>A	uc010bwe.2	+	15	1946	c.1707G>A	c.(1705-1707)AAG>AAA	p.K569K	ACSM2A_uc002dhf.3_Silent_p.K569K|ACSM2A_uc002dhg.3_Silent_p.K569K|ACSM2A_uc010vay.1_Silent_p.K490K|ACSM2A_uc002dhh.3_Silent_p.K199K|uc002dhi.1_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	569					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AGGAGTGGAAGATGTCCGGAA	0.468													51	64					0	0	0.014410	0	0
ACSM1	116285	broad.mit.edu	37	16	20702395	20702395	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:20702395C>T	uc002dhm.1	-	1	184	c.116G>A	c.(115-117)AGA>AAA	p.R39K	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.R39K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	39					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GTCATTCCATCTTGGGGCTCC	0.507													42	82					0	0	0.010771	0	0
ACSM1	116285	broad.mit.edu	37	16	20702472	20702472	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:20702472G>A	uc002dhm.1	-	1	107	c.39C>T	c.(37-39)ATC>ATT	p.I13I	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.I13I	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	13					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						AGGATTTGTGGATGCCCCAGA	0.537													24	100					0	0	0.018920	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261429	21261430	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:21261429_21261430CC>TT	uc010bwp.1	+	2	585_586	c.542_543CC>TT	c.(541-543)TCC>TTT	p.S181F	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	181										ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		GGTACCTTCTCCAGATCATCCC	0.465													18	33					0	0	0.004672	0	0
SCNN1G	6340	broad.mit.edu	37	16	23205492	23205492	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:23205492G>A	uc002dlm.1	+	5	949	c.810G>A	c.(808-810)AGG>AGA	p.R270R		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	270	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TCCTCCATAGGAATTTCACGC	0.493													23	49					0	0	0.014323	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208688	23208688	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:23208688C>T	uc002dlm.1	+	6	1156	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	339	Extracellular (By similarity).			F -> S (in Ref. 1; CAA60633).	excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	AGTATCCCTTCGTCGAAGATG	0.453													18	25					0	0	0.007413	0	0
PRKCB	5579	broad.mit.edu	37	16	24124306	24124306	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:24124306G>A	uc002dmd.2	+	8	1031	c.834G>A	c.(832-834)CTG>CTA	p.L278L	PRKCB_uc002dme.2_Silent_p.L278L	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	278					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TTAAGTTACTGAGCCAGGAGG	0.443													28	39					0	0	0.009535	0	0
CACNG3	10368	broad.mit.edu	37	16	24372868	24372868	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:24372868C>T	uc002dmf.2	+	4	1832	c.632C>T	c.(631-633)TCC>TTC	p.S211F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	211					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CGAGCCAAATCCCACTCGGAG	0.498													28	32					0	0	0.009535	0	0
RBBP6	5930	broad.mit.edu	37	16	24580152	24580152	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:24580152C>T	uc002dmh.2	+	17	3181	c.2141C>T	c.(2140-2142)TCT>TTT	p.S714F	RBBP6_uc010vcb.1_Missense_Mutation_p.S581F|RBBP6_uc002dmi.2_Missense_Mutation_p.S680F|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.S547F	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	714					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CGTTCACGCTCTTATTCTCGA	0.433													21	28					0	0	0.012319	0	0
CCDC101	112869	broad.mit.edu	37	16	28602160	28602160	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:28602160C>T	uc002dqf.2	+	9	854	c.669C>T	c.(667-669)GAC>GAT	p.D223D	uc010vct.1_Intron	NM_138414	NP_612423	Q96ES7	SGF29_HUMAN	coiled-coil domain containing 101	223	SGF29 C-terminal.				establishment of protein localization to chromatin|histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|SAGA-type complex	methylated histone residue binding			central_nervous_system(1)	1						CGGAGACGGACCCTGAGGCCT	0.647													5	15					0	0	0.014758	0	0
KIF22	3835	broad.mit.edu	37	16	29815380	29815380	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:29815380G>A	uc002dts.3	+	11	1695	c.1671G>A	c.(1669-1671)AAG>AAA	p.K557K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Silent_p.K489K|KIF22_uc010vdw.1_Silent_p.K489K|KIF22_uc010bzf.2_Silent_p.K489K|KIF22_uc002dtt.1_Silent_p.K62K|KIF22_uc002frc.1_5'Flank|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	557					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						AAGGCCGGAAGAGAAAGGTGA	0.542													16	32					0	0	0.006122	0	0
MVP	9961	broad.mit.edu	37	16	29841948	29841948	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:29841948C>T	uc002dui.2	+	2	162	c.78C>T	c.(76-78)TCC>TCT	p.S26S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Silent_p.S26S|MVP_uc010vea.1_5'Flank	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	26	MVP 1.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GCAACGTGTCCCGTGTGGAGG	0.592													20	27					0	0	0.016522	0	0
ITGAL	3683	broad.mit.edu	37	16	30500600	30500600	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:30500600G>A	uc002dyi.3	+	11	1282	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	ITGAL_uc002dyj.3_Missense_Mutation_p.G286E|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	369	FG-GAP 3.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GGGGCAGTAGGAGCCAAGGAC	0.607													22	38					0	0	0.014323	0	0
ITGAM	3684	broad.mit.edu	37	16	31341842	31341842	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:31341842C>T	uc002ebq.2	+	28	3290	c.3192C>T	c.(3190-3192)CTC>CTT	p.L1064L	ITGAM_uc002ebr.2_Silent_p.L1065L|ITGAM_uc010can.2_Silent_p.L470L	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	1064	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						ATAACCACCTCCTGATCGTGA	0.627													7	6					0	0	0.004482	0	0
MYLK3	91807	broad.mit.edu	37	16	46744674	46744674	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:46744674C>T	uc002eei.3	-	11	2258	c.2142G>A	c.(2140-2142)GGG>GGA	p.G714G	MYLK3_uc010vge.1_Silent_p.G373G	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	714	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CATCTGTTTCCCCTAGAAATG	0.468													55	26					0	0	0.014410	0	0
MYLK3	91807	broad.mit.edu	37	16	46766493	46766493	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:46766493C>T	uc002eei.3	-	4	1205	c.1089G>A	c.(1087-1089)GAG>GAA	p.E363E	MYLK3_uc010vge.1_Silent_p.E22E|MYLK3_uc002eej.1_Silent_p.E22E	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	363					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CTGCTGGAGCCTCTGTGGTGA	0.632													13	3					0	0	0.016723	0	0
ADCY7	113	broad.mit.edu	37	16	50325658	50325658	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:50325658C>T	uc002egd.1	+	3	655	c.387C>T	c.(385-387)TTC>TTT	p.F129F	ADCY7_uc002egb.1_Silent_p.F129F|ADCY7_uc002egc.1_Silent_p.F129F	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	129	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TGCCCTTCTTCCTGTTCATTG	0.657													6	17					0	0	0.003080	0	0
SALL1	6299	broad.mit.edu	37	16	51174880	51174880	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:51174880G>A	uc010vgs.1	-	2	1284	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	SALL1_uc010vgr.1_Missense_Mutation_p.S321F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	418					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGCAGACAAGGAGTTTAAATC	0.493													43	66					0	0	0.014410	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53679660	53679660	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:53679660G>A	uc002ehp.2	-	17	2624	c.2560C>T	c.(2560-2562)CGA>TGA	p.R854*	RPGRIP1L_uc002eho.3_Nonsense_Mutation_p.R854*|RPGRIP1L_uc010vgy.1_Nonsense_Mutation_p.R854*|RPGRIP1L_uc010cbx.2_Nonsense_Mutation_p.R854*|RPGRIP1L_uc010vgz.1_Nonsense_Mutation_p.R854*	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	854	C2 2.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TTAAGGTATCGATCCAAGTCC	0.373													164	231					0	0	0.014410	0	0
CDH8	1006	broad.mit.edu	37	16	61687532	61687532	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:61687532C>T	uc002eog.1	-	12	2632	c.2380G>A	c.(2380-2382)GAA>AAA	p.E794K		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	794	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTGTCACTTTCACCAACAGAG	0.448													14	4					0	0	0.003163	0	0
CDH8	1006	broad.mit.edu	37	16	61687629	61687629	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:61687629G>A	uc002eog.1	-	12	2535	c.2283C>T	c.(2281-2283)TCC>TCT	p.S761S		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	761	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGACTCCAAGGAGCTGAGGG	0.537													8	4					0	0	0.003080	0	0
CDH8	1006	broad.mit.edu	37	16	61687834	61687834	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:61687834C>G	uc002eog.1	-	12	2330	c.2078G>C	c.(2077-2079)GGA>GCA	p.G693A		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	693	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GGGTAAAAATCCATTAATTCC	0.408													34	12					0	0	0.012213	0	0
CDH11	1009	broad.mit.edu	37	16	65005942	65005942	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:65005942G>A	uc002eoi.2	-	10	1850	c.1416C>T	c.(1414-1416)GTC>GTT	p.V472V	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.V472V|CDH11_uc010vin.1_Silent_p.V346V	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	472	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TGGCCACTGGGACTTTGGCTT	0.468			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			12	30					0	0	0.016723	0	0
CDH16	1014	broad.mit.edu	37	16	66947481	66947481	+	Silent	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:66947481C>G	uc002eql.2	-	8	889	c.816G>C	c.(814-816)CTG>CTC	p.L272L	CDH16_uc010cdy.2_Silent_p.L272L|CDH16_uc002eqm.2_Silent_p.L175L	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	272	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GATGGCTCTCCAGGTGATAGT	0.592													3	45					0	0	0.004672	0	0
CES3	23491	broad.mit.edu	37	16	66997711	66997711	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:66997711G>A	uc002eqt.2	+	4	506	c.433G>A	c.(433-435)GTA>ATA	p.V145I	CES3_uc010cdz.2_Missense_Mutation_p.V145I|CES3_uc010cea.2_RNA	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	145						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GCAGGTCATGGTATGGGTCCA	0.612													18	26					0	0	0.008871	0	0
FHOD1	29109	broad.mit.edu	37	16	67264382	67264382	+	Silent	SNP	G	A	A	rs150328636		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:67264382G>A	uc002esl.2	-	19	2998	c.2886C>T	c.(2884-2886)GGC>GGT	p.G962G	FHOD1_uc002esk.2_Silent_p.G21G|FHOD1_uc010ced.2_Silent_p.G769G	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	962	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GCGGGGTGTAGCCCAGGTAGA	0.602													31	61					0	0	0.013726	0	0
SLC9A5	6553	broad.mit.edu	37	16	67304830	67304830	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:67304830C>T	uc002esm.2	+	16	2471	c.2408C>T	c.(2407-2409)TCC>TTC	p.S803F	SLC9A5_uc010cee.2_Missense_Mutation_p.S508F|SLC9A5_uc010vji.1_Missense_Mutation_p.S307F	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	803					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		AGCCTAGCGTCCCCTCCCTGT	0.607													13	29					0	0	0.004007	0	0
FAM65A	79567	broad.mit.edu	37	16	67576226	67576226	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:67576226G>A	uc010vjp.1	+	13	1693	c.1597G>A	c.(1597-1599)GGC>AGC	p.G533S	FAM65A_uc010cei.1_Missense_Mutation_p.G355S|FAM65A_uc002eth.2_Missense_Mutation_p.G513S|FAM65A_uc010cej.2_Missense_Mutation_p.G516S|FAM65A_uc002eti.1_Missense_Mutation_p.G476S|FAM65A_uc010vjq.1_Missense_Mutation_p.G527S|FAM65A_uc002etj.1_Missense_Mutation_p.G512S|FAM65A_uc002etk.2_Missense_Mutation_p.G512S	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	517	Pro-rich.					cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		CGGTACAACAGGCTCTGTCCC	0.597													65	96					0	0	0.014410	0	0
PSMB10	5699	broad.mit.edu	37	16	67969926	67969926	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:67969926G>T	uc002eux.1	-	4	424	c.323C>A	c.(322-324)TCT>TAT	p.S108Y		NM_002801	NP_002792	P40306	PSB10_HUMAN	proteasome beta 10 subunit proprotein	108					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|humoral immune response|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00415)|Epithelial(162;0.0182)|all cancers(182;0.119)		GCGGCCCGTAGATAACGCGTG	0.662													22	22					8.10497e-08	9.26424e-08	0.010504	1	0
NFAT5	10725	broad.mit.edu	37	16	69727479	69727479	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:69727479C>T	uc002exm.1	+	12	4905	c.3697C>T	c.(3697-3699)CAG>TAG	p.Q1233*	NFAT5_uc002exi.2_Nonsense_Mutation_p.Q1157*|NFAT5_uc002exj.1_Nonsense_Mutation_p.Q1157*|NFAT5_uc002exk.1_Nonsense_Mutation_p.Q1157*|NFAT5_uc002exl.1_Nonsense_Mutation_p.Q1251*|NFAT5_uc002exn.1_Nonsense_Mutation_p.Q1250*|NFAT5_uc002exo.1_RNA	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1233					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AACCATGTTCCAGTCACAGCA	0.403													33	44					0	0	0.019004	0	0
HYDIN	54768	broad.mit.edu	37	16	71103368	71103368	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:71103368G>A	uc002ezr.2	-	14	1904	c.1776C>T	c.(1774-1776)ACC>ACT	p.T592T	HYDIN_uc010cfz.1_Silent_p.T337T|HYDIN_uc002ezv.2_Silent_p.T592T|HYDIN_uc010vmc.1_Silent_p.T609T|HYDIN_uc010vmd.1_Silent_p.T619T|HYDIN_uc002ezw.3_Silent_p.T609T	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	592										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGATCAAAGAGGTATTATTGA	0.438													10	21					0	0	0.010729	0	0
DHX38	9785	broad.mit.edu	37	16	72142233	72142233	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:72142233C>T	uc002fcb.2	+	22	3427	c.3072C>T	c.(3070-3072)TCC>TCT	p.S1024S	DHX38_uc010vmp.1_Silent_p.S336S	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	1024					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				ATAATTACTCCACCATCTGGT	0.488													17	16					0	0	0.004007	0	0
FA2H	79152	broad.mit.edu	37	16	74752922	74752922	+	Silent	SNP	G	A	A	rs146684287		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:74752922G>A	uc002fde.1	-	5	818	c.750C>T	c.(748-750)ATC>ATT	p.I250I	FA2H_uc002fdd.1_5'Flank|FA2H_uc010vmy.1_RNA	NM_024306	NP_077282	Q7L5A8	FA2H_HUMAN	fatty acid 2-hydroxylase	250					cell death|electron transport chain|fatty acid biosynthetic process|sphingolipid metabolic process|transport	endoplasmic reticulum membrane|integral to membrane|microsome	heme binding|oxidoreductase activity				0						AGTGCAGCATGATGAGGTAAT	0.632													24	38					0	0	0.005443	0	0
KARS	3735	broad.mit.edu	37	16	75670389	75670389	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:75670389C>T	uc002feq.2	-	4	493	c.445G>A	c.(445-447)GGA>AGA	p.G149R	KARS_uc002fer.2_Missense_Mutation_p.G177R|KARS_uc002fes.2_5'UTR|KARS_uc010cgz.2_5'UTR	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	149					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	ACCCCCTCTCCTCGAAGATCA	0.453													62	109					0	0	0.014410	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353924	77353924	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:77353924G>A	uc002ffc.3	-	16	2773	c.2354C>T	c.(2353-2355)TCC>TTC	p.S785F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S373F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S481F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	785	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTAACTGGAGGAAACCTGCAG	0.537													15	40					0	0	0.003163	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474488	84474488	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:84474488A>T	uc002fhx.2	+	14	1324	c.1235A>T	c.(1234-1236)CAA>CTA	p.Q412L	ATP2C2_uc010chj.2_Missense_Mutation_p.Q412L|ATP2C2_uc002fhy.2_Missense_Mutation_p.Q429L|ATP2C2_uc002fhz.2_Missense_Mutation_p.Q261L	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	412	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						TATGACGGTCAAGGGACTGTG	0.398													9	26					0	0	0.006214	0	0
FANCA	2175	broad.mit.edu	37	16	89805688	89805688	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:89805688G>A	uc002fou.1	-	41	4062	c.4020C>T	c.(4018-4020)TCC>TCT	p.S1340S	ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fos.3_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc010vpn.1_Silent_p.S1340S	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	1340					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		CATGGAAGTAGGAGAGAAGAC	0.517			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				13	19					0	0	0.002450	0	0
OR1D2	4991	broad.mit.edu	37	17	2995575	2995575	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:2995575G>A	uc010vrb.1	-	1	716	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	239	Helical; Name=6; (Potential).			S->A: Abolishes nuclear translocation of ARRB2; when associated with A-230 and A- 232.	cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						GGCACAGGTGGAGAAGGCTTT	0.458													36	47					0	0	0.017118	0	0
PLD2	5338	broad.mit.edu	37	17	4714187	4714187	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:4714187C>T	uc002fzc.2	+	10	1052	c.951C>T	c.(949-951)TTC>TTT	p.F317F	PLD2_uc010vsj.1_Silent_p.F174F|PLD2_uc002fzd.2_Silent_p.F317F	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	317					cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	GCAGAGACTTCCTACAGCTGC	0.622													21	34					0	0	0.008871	0	0
GP1BA	2811	broad.mit.edu	37	17	4837492	4837492	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:4837492G>A	uc010vsq.1	+	3	1629	c.1554G>A	c.(1552-1554)CTG>CTA	p.L518L	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	531											0						TCCTCCCCCTGGGCTTCTATG	0.572													24	36					0	0	0.018920	0	0
USP6	9098	broad.mit.edu	37	17	5050444	5050444	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:5050444C>T	uc002gau.1	+	29	4616	c.2386C>T	c.(2386-2388)CCT>TCT	p.P796S	USP6_uc002gav.1_Missense_Mutation_p.P796S|USP6_uc010ckz.1_Missense_Mutation_p.P479S	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	796					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						ATTTGAAATTCCTGTCCCTTC	0.398			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								16	29					0	0	0.004990	0	0
C17orf87	388325	broad.mit.edu	37	17	5114157	5114157	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:5114157T>G	uc002gbh.2	-	5	410	c.377A>C	c.(376-378)GAG>GCG	p.E126A	uc002gbf.1_Intron|uc002gbg.1_Intron|C17orf87_uc010clb.1_Missense_Mutation_p.E119A	NM_207103	NP_996986	Q6UWF3	CQ087_HUMAN	hypothetical protein LOC388325	126						integral to membrane				ovary(1)	1						ATCTTCAGGCTCAATGTAGCT	0.413													25	27					0	0	0.003954	0	0
BCL6B	255877	broad.mit.edu	37	17	6928507	6928507	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:6928507C>T	uc002geg.2	+	5	934	c.877C>T	c.(877-879)CGT>TGT	p.R293C	BCL6B_uc010clt.1_Missense_Mutation_p.R294C	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	293						nucleus	zinc ion binding			skin(1)	1						TGAACGGGCTCGTCCACTACC	0.547													49	77					0	0	0.014410	0	0
DNAH2	146754	broad.mit.edu	37	17	7674161	7674161	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:7674161G>A	uc002giu.1	+	26	4286	c.4272G>A	c.(4270-4272)AAG>AAA	p.K1424K		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1424	TPR 1.|Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCTTTGAGAAGGATGTGGACC	0.493													34	73					0	0	0.019004	0	0
DNAH2	146754	broad.mit.edu	37	17	7674777	7674777	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:7674777C>T	uc002giu.1	+	27	4506	c.4492C>T	c.(4492-4494)CAT>TAT	p.H1498Y		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1498	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCGGAGCACCCATCACCCAGG	0.527													11	15					0	0	0.010729	0	0
DNAH2	146754	broad.mit.edu	37	17	7719992	7719992	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:7719992G>A	uc002giu.1	+	63	9847	c.9833G>A	c.(9832-9834)CGA>CAA	p.R3278Q	DNAH2_uc010cnm.1_Missense_Mutation_p.R216Q	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3278	Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AAGCTGGAGCGAGCTGGGATG	0.542													31	37					0	0	0.010818	0	0
PFAS	5198	broad.mit.edu	37	17	8172023	8172023	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:8172023C>T	uc002gkr.2	+	27	3696	c.3555C>T	c.(3553-3555)TCC>TCT	p.S1185S	PFAS_uc010vuv.1_Silent_p.S761S|PFAS_uc002gks.2_Silent_p.S264S	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1185	Glutamine amidotransferase type-1.				'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCCTGACTCCCAGCCAGCCC	0.672													16	29					0	0	0.003163	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215685	8215685	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:8215685C>T	uc002glc.2	+	2	449	c.328C>T	c.(328-330)CCA>TCA	p.P110S	ARHGEF15_uc002glb.1_Missense_Mutation_p.P110S|ARHGEF15_uc002gld.2_Missense_Mutation_p.P110S|ARHGEF15_uc010vuw.1_Missense_Mutation_p.P110S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	110	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CTCCGCCTCCCCAGAACCTGC	0.672													36	48					0	0	0.005524	0	0
GLP2R	9340	broad.mit.edu	37	17	9792876	9792876	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:9792876G>A	uc002gmd.1	+	13	1516	c.1516G>A	c.(1516-1518)GCC>ACC	p.A506T		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	506	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CCTACATCTAGCCATGCGAGG	0.622													21	38					0	0	0.003954	0	0
MYH13	8735	broad.mit.edu	37	17	10258071	10258071	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10258071C>T	uc002gmk.1	-	11	1021	c.931G>A	c.(931-933)GAC>AAC	p.D311N		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	311	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						AAGGGGAAGTCGAAGGGGTTG	0.458													21	39					0	0	0.014323	0	0
MYH8	4626	broad.mit.edu	37	17	10303856	10303856	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10303856G>A	uc002gmm.2	-	27	3681	c.3586C>T	c.(3586-3588)CGG>TGG	p.R1196W	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1196	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGCTTCTTCCGAAGAGCAGCC	0.542									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				34	34					0	0	0.012213	0	0
MYH4	4622	broad.mit.edu	37	17	10348346	10348346	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10348346C>T	uc002gmn.2	-	37	5524	c.5413G>A	c.(5413-5415)GAG>AAG	p.E1805K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1805	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCCAGCTGCTCAGCCTCATCC	0.567													30	67					0	0	0.012213	0	0
MYH4	4622	broad.mit.edu	37	17	10362607	10362607	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10362607G>A	uc002gmn.2	-	15	1659	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	516	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GGTCCATCCCGAAGTCAATGA	0.473													26	56					0	0	0.008361	0	0
MYH1	4619	broad.mit.edu	37	17	10399431	10399431	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10399431C>A	uc002gmo.2	-	35	5099	c.5005G>T	c.(5005-5007)GAG>TAG	p.E1669*	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1669	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTCAGGTCCTCCTGGCTCCGG	0.582													15	28					6.72482e-11	7.71025e-11	0.003163	1	0
MYH1	4619	broad.mit.edu	37	17	10399641	10399641	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10399641C>T	uc002gmo.2	-	34	4976	c.4882G>A	c.(4882-4884)GAA>AAA	p.E1628K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1628	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATTTCCATTTCATTGAGGTCT	0.498													41	49					0	0	0.008740	0	0
MYH1	4619	broad.mit.edu	37	17	10399732	10399732	+	Silent	SNP	G	A	A	rs138249334		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10399732G>A	uc002gmo.2	-	34	4885	c.4791C>T	c.(4789-4791)ATC>ATT	p.I1597I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1597	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGACTCCACGATTCTAATGT	0.443													42	88					0	0	0.014410	0	0
MYH1	4619	broad.mit.edu	37	17	10412885	10412885	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10412885C>T	uc002gmo.2	-	15	1598	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	502	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTGTACTCCTCCTGCTCCAGC	0.488													20	52					0	0	0.012319	0	0
MYH1	4619	broad.mit.edu	37	17	10419317	10419317	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10419317C>T	uc002gmo.2	-	5	525	c.431G>A	c.(430-432)CGA>CAA	p.R144Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	144	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTTTTGCCTCGGTAGGCTGT	0.512													51	63					0	0	0.014410	0	0
MYH2	4620	broad.mit.edu	37	17	10428305	10428305	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:10428305C>T	uc010coi.2	-	34	4868	c.4740G>A	c.(4738-4740)AGG>AGA	p.R1580R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1580R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1580	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGCAATTTTCCTATCAACCT	0.453													27	47					0	0	0.006320	0	0
DNAH9	1770	broad.mit.edu	37	17	11597737	11597737	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:11597737C>T	uc002gne.2	+	22	4913	c.4845C>T	c.(4843-4845)ATC>ATT	p.I1615I	DNAH9_uc010coo.2_Silent_p.I909I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1615	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGTTAGACATCCTTTCCAACG	0.567													6	17					0	0	0.001168	0	0
DNAH9	1770	broad.mit.edu	37	17	11833214	11833214	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:11833214C>T	uc002gne.2	+	63	11977	c.11909C>T	c.(11908-11910)ACC>ATC	p.T3970I	DNAH9_uc010coo.2_Intron|DNAH9_uc002gnf.2_Missense_Mutation_p.T282I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3970	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGGCTCAGCACCCTGGAGAAG	0.552													5	10					0	0	0.014758	0	0
RICH2	9912	broad.mit.edu	37	17	12893453	12893453	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:12893453G>A	uc002gnr.3	+	21	2749	c.2422G>A	c.(2422-2424)GAC>AAC	p.D808N	RICH2_uc010vvk.1_3'UTR|RICH2_uc010vvl.1_3'UTR|RICH2_uc002gns.3_3'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.D802N|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	808					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGACAAGAGGGACTCGGAGGA	0.607													8	10					0	0	0.003080	0	0
NCOR1	9611	broad.mit.edu	37	17	15965136	15965136	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:15965136G>A	uc002gpo.2	-	37	5700	c.5460C>T	c.(5458-5460)GCC>GCT	p.A1820A	NCOR1_uc002gpn.2_Silent_p.A1836A|NCOR1_uc002gpm.2_Silent_p.A340A|NCOR1_uc010vwb.1_Silent_p.A404A|NCOR1_uc010coy.2_Silent_p.A728A|NCOR1_uc010vwc.1_Silent_p.A630A	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1820	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GAGCAGCCAGGGCATCCGCAG	0.517													16	27					0	0	0.004990	0	0
TOP3A	7156	broad.mit.edu	37	17	18205274	18205274	+	Silent	SNP	G	A	A	rs34430764	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:18205274G>A	uc002gsx.1	-	8	1069	c.840C>T	c.(838-840)ATC>ATT	p.I280I	TOP3A_uc010vxr.1_5'Flank|TOP3A_uc002gsw.1_5'UTR|TOP3A_uc010vxs.1_Silent_p.I178I|TOP3A_uc010cqa.1_RNA	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	280					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding	p.I280I(1)		skin(3)	3						TGAATTCTACGATACCATCTT	0.403													6	15					0	0	0.001984	0	0
EPN2	22905	broad.mit.edu	37	17	19216440	19216440	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:19216440C>T	uc002gvd.3	+	7	1443	c.995C>T	c.(994-996)ACT>ATT	p.T332I	EPN2_uc010cql.1_Missense_Mutation_p.T41I|EPN2_uc002gve.3_Missense_Mutation_p.T275I|EPN2_uc002gvf.3_Missense_Mutation_p.T47I|EPN2_uc010vyo.1_Missense_Mutation_p.T40I|EPN2_uc002gvg.1_Missense_Mutation_p.T275I|EPN2_uc010vyp.1_Missense_Mutation_p.T268I|EPN2_uc010vyq.1_Missense_Mutation_p.T269I|EPN2_uc002gvh.1_Missense_Mutation_p.T332I|EPN2_uc002gvj.3_5'UTR	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	332					endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					CCACAGCAGACTACGCTGTTG	0.527													32	56					0	0	0.019004	0	0
MAP2K3	5606	broad.mit.edu	37	17	21215473	21215473	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:21215473G>A	uc002gys.2	+	10	1059	c.794G>A	c.(793-795)CGG>CAG	p.R265Q	MAP2K3_uc002gyt.2_Missense_Mutation_p.R236Q|MAP2K3_uc002gyu.2_Missense_Mutation_p.R236Q	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	265	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		GCCATCCTGCGGTTCCCTTAC	0.672													7	30					0	0	0.003080	0	0
FLJ40504	284085	broad.mit.edu	37	17	26603971	26603971	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:26603971G>A	uc002has.3	-	3	600	c.504C>T	c.(502-504)ATC>ATT	p.I168I		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		TCAGGTTCTCGATGGTCTTGA	0.522													22	36					0	0	0.016522	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821451	26821451	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:26821451G>A	uc002hbh.2	+	9	1296	c.1229G>A	c.(1228-1230)TGG>TAG	p.W410*	SLC13A2_uc010wam.1_Nonsense_Mutation_p.W366*|SLC13A2_uc010wan.1_Nonsense_Mutation_p.W459*|SLC13A2_uc010wao.1_Nonsense_Mutation_p.W367*|SLC13A2_uc002hbi.2_Nonsense_Mutation_p.W339*	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	410						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CTCCTCGACTGGAAGACGGTG	0.577											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	43					0	0	0.007291	0	0
SLC13A2	9058	broad.mit.edu	37	17	26822720	26822720	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:26822720G>A	uc002hbh.2	+	10	1423	c.1356G>A	c.(1354-1356)CAG>CAA	p.Q452Q	SLC13A2_uc010wam.1_Silent_p.Q408Q|SLC13A2_uc010wan.1_Silent_p.Q501Q|SLC13A2_uc010wao.1_Silent_p.Q409Q|SLC13A2_uc002hbi.2_Silent_p.Q381Q	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	452	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCCCACTGCAGAGTGTGCCAG	0.622													23	40					0	0	0.016522	0	0
FOXN1	8456	broad.mit.edu	37	17	26861883	26861883	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:26861883C>T	uc010crm.2	+	8	1492	c.1294C>T	c.(1294-1296)CCC>TCC	p.P432S	FOXN1_uc002hbj.2_Missense_Mutation_p.P432S	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	432					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					AGCTCCAGGCCCCATTCCTGG	0.677													8	16					0	0	0.004482	0	0
CCDC55	84081	broad.mit.edu	37	17	28511669	28511669	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:28511669C>T	uc002heu.2	+	7	682	c.654C>T	c.(652-654)TCC>TCT	p.S218S	CCDC55_uc002hev.2_Silent_p.S164S|CCDC55_uc010wbl.1_Silent_p.S164S|CCDC55_uc010wbm.1_Silent_p.S164S|CCDC55_uc002hex.2_Silent_p.S164S	NM_032141	NP_115517	Q9H0G5	NSRP1_HUMAN	coiled-coil domain containing 55 isoform 1	218					developmental process|nucleocytoplasmic transport|regulation of alternative nuclear mRNA splicing, via spliceosome	nuclear speck|ribonucleoprotein complex	mRNA binding|protein binding				0						GGGGCTTCTCCAATGAAGTAA	0.348													18	20					0	0	0.012319	0	0
ADAP2	55803	broad.mit.edu	37	17	29280326	29280326	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:29280326G>A	uc002hfx.2	+	8	1041	c.762G>A	c.(760-762)AGG>AGA	p.R254R	ADAP2_uc010csk.2_Silent_p.R260R|ADAP2_uc002hfy.2_Silent_p.R254R|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	254					heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						TCCTCACCAGGAACTACCTCA	0.512													6	17					0	0	0.003080	0	0
NF1	4763	broad.mit.edu	37	17	29554566	29554567	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:29554566_29554567GG>AA	uc002hgg.2	+	20	2684_2685	c.2351_2352GG>AA	c.(2350-2352)TGG>TAA	p.W784*	NF1_uc002hgh.2_Nonsense_Mutation_p.W784*|NF1_uc010csn.1_Nonsense_Mutation_p.W644*|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	784			W -> C (in NF1).|W -> R (in NF1).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)|p.H781_Q786del(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CATGCAAAATGGGAACAAGCAA	0.381			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			6	25					0	0	0.004672	0	0
SLFN13	146857	broad.mit.edu	37	17	33768102	33768102	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:33768102C>T	uc002hjk.1	-	4	2536	c.2206G>A	c.(2206-2208)GAA>AAA	p.E736K	SLFN13_uc010wch.1_Missense_Mutation_p.E736K|SLFN13_uc002hjl.2_Missense_Mutation_p.E736K|SLFN13_uc010ctt.2_Missense_Mutation_p.E418K|SLFN13_uc002hjm.2_Missense_Mutation_p.E405K	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	736						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TCGGCTATTTCATCTGCATTG	0.443													58	82					0	0	0.014410	0	0
TBC1D3B	414059	broad.mit.edu	37	17	34499273	34499273	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:34499273G>A	uc002hky.2	-	7	588	c.438C>T	c.(436-438)GAC>GAT	p.D146D	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	146	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTATGTCCCGGTCGATGCGCT	0.547													42	352					0	0	0.014410	0	0
PIGW	284098	broad.mit.edu	37	17	34893583	34893583	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:34893583C>T	uc002hmy.1	+	2	676	c.633C>T	c.(631-633)TTC>TTT	p.F211F	MYO19_uc002hmw.2_5'Flank|MYO19_uc010cuu.2_5'Flank|MYO19_uc010wcy.1_5'Flank|MYO19_uc010wcz.1_5'Flank|MYO19_uc010wda.1_5'Flank|MYO19_uc002hmx.2_5'Flank|PIGW_uc002hmz.1_Silent_p.F211F	NM_178517	NP_848612	Q7Z7B1	PIGW_HUMAN	phosphatidylinositol glycan, class W	211	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	O-acyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CATTAGTCTTCCTAGGAATCG	0.373													16	46					0	0	0.004990	0	0
GPR179	440435	broad.mit.edu	37	17	36486381	36486381	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:36486381G>A	uc002hpz.2	-	11	3092	c.3071C>T	c.(3070-3072)CCA>CTA	p.P1024L		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1024	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGCTCGAGCTGGGGCAGGGGA	0.612													16	31					0	0	0.004007	0	0
PCGF2	7703	broad.mit.edu	37	17	36894823	36894823	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:36894823G>A	uc002hqp.1	-	8	694	c.451C>T	c.(451-453)CTG>TTG	p.L151L	PCGF2_uc002hqn.1_Missense_Mutation_p.P152L|PCGF2_uc002hqo.1_Missense_Mutation_p.P152L|PCGF2_uc010cvo.1_Silent_p.L26L|PCGF2_uc002hqq.1_Missense_Mutation_p.P152L	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	151					negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					CCATTCTCCAGGGGGCCCTTC	0.512													22	53					0	0	0.016522	0	0
CACNB1	782	broad.mit.edu	37	17	37340360	37340360	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:37340360G>A	uc002hrm.1	-	10	975	c.822C>T	c.(820-822)TCC>TCT	p.S274S	CACNB1_uc002hrl.1_Silent_p.S46S|CACNB1_uc002hrn.2_Silent_p.S274S|CACNB1_uc002hro.2_Silent_p.S319S	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	274					axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	GCTTAGCCAGGGAAATATCTG	0.582													14	17					0	0	0.004990	0	0
KRT40	125115	broad.mit.edu	37	17	39140096	39140096	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:39140096C>T	uc010cxh.1	-	3	591	c.430G>A	c.(430-432)GAA>AAA	p.E144K	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	144	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				TGGAGATCTTCAATGGTGTTG	0.468													43	74					0	0	0.013114	0	0
KRT15	3866	broad.mit.edu	37	17	39671910	39671910	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:39671910T>G	uc002hwy.2	-	6	1252	c.1061A>C	c.(1060-1062)GAG>GCG	p.E354A	KRT15_uc002hwz.2_Missense_Mutation_p.E256A|KRT15_uc002hxa.2_Missense_Mutation_p.E189A|KRT15_uc002hxb.1_Missense_Mutation_p.E189A	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	354	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				ATAGCGGCACTCTGTCTCGGC	0.602													16	20					0	0	0.008871	0	0
KLHL11	55175	broad.mit.edu	37	17	40011029	40011029	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:40011029T>A	uc002hyf.1	-	2	1096	c.1090A>T	c.(1090-1092)ATT>TTT	p.I364F		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	364	Kelch 1.					extracellular region					0		Breast(137;0.00156)				ACACCTCCAATAACCATGATC	0.438													26	41					0	0	0.006320	0	0
RUNDC1	146923	broad.mit.edu	37	17	41142437	41142437	+	Silent	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:41142437T>A	uc002ici.1	+	4	972	c.960T>A	c.(958-960)CCT>CCA	p.P320P	RUNDC1_uc010whi.1_Silent_p.P90P	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	320											0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		GCAGAACGCCTCCAGGAAACA	0.358													24	41					0	0	0.003954	0	0
HDAC5	10014	broad.mit.edu	37	17	42155881	42155881	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:42155881C>T	uc002ifd.1	-	26	3527	c.3316G>A	c.(3316-3318)GAA>AAA	p.E1106K	HDAC5_uc002ife.1_Missense_Mutation_p.E1106K|HDAC5_uc002iff.1_Missense_Mutation_p.E1107K|HDAC5_uc010czp.1_Missense_Mutation_p.E1021K	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	1106	Nuclear export signal.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		GGGCTGTGTTCCCGGGCTGCC	0.697													20	32					0	0	0.012319	0	0
C17orf53	78995	broad.mit.edu	37	17	42226366	42226366	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:42226366C>T	uc002ifi.1	+	3	1380	c.1195C>T	c.(1195-1197)CCT>TCT	p.P399S	C17orf53_uc010czq.1_Missense_Mutation_p.P399S|C17orf53_uc002ifj.1_Missense_Mutation_p.P399S|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	399											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TCGCCGTTTCCCTGGCCCAGC	0.617													9	34					0	0	0.004482	0	0
GFAP	2670	broad.mit.edu	37	17	42988759	42988759	+	Nonsense_Mutation	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:42988759A>C	uc002ihq.2	-	6	1032	c.972T>G	c.(970-972)TAT>TAG	p.Y324*	GFAP_uc002ihr.2_Nonsense_Mutation_p.Y324*|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	324	Coil 2B.|Rod.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				GCGCCTCCTGATAACTGGCCG	0.682													14	24					0	0	0.004990	0	0
IMP5	162540	broad.mit.edu	37	17	43922296	43922296	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:43922296C>T	uc010wka.1	+	1	24	c.24C>T	c.(22-24)CTC>CTT	p.L8L	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	8						integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCTTCCTCCTCCCCGTGGGCT	0.627													15	22					0	0	0.007413	0	0
SCRN2	90507	broad.mit.edu	37	17	45918102	45918102	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:45918102G>A	uc002imd.2	-	2	234	c.108C>T	c.(106-108)CCC>CCT	p.P36P	SCRN2_uc002imc.2_Silent_p.P44P|SCRN2_uc002imf.2_Silent_p.P36P|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	36					proteolysis		dipeptidase activity			ovary(1)	1						CCTCGTCCCGGGGTCGGTCCG	0.642													19	16					0	0	0.007413	0	0
ZNF652	22834	broad.mit.edu	37	17	47394451	47394451	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:47394451G>A	uc002iov.3	-	2	1101	c.637C>T	c.(637-639)CGT>TGT	p.R213C	ZNF652_uc002iow.2_Missense_Mutation_p.R213C|ZNF652_uc002iou.3_Intron	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	213					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			CTCTTCCTACGACCTCTTGTA	0.512													19	22					0	0	0.012319	0	0
NXPH3	11248	broad.mit.edu	37	17	47656142	47656142	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:47656142G>A	uc002ipa.2	+	2	523	c.239G>A	c.(238-240)GGG>GAG	p.G80E	NXPH3_uc010wlw.1_Missense_Mutation_p.G80E	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor	80	III.				neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					GGCATTCTTGGGCAGCCCCCC	0.642													18	26					0	0	0.008871	0	0
AKAP1	8165	broad.mit.edu	37	17	55182852	55182852	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:55182852C>T	uc002iux.2	+	2	258	c.27C>T	c.(25-27)TTC>TTT	p.F9F	AKAP1_uc010wnl.1_Silent_p.F9F|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Silent_p.F9F	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	9					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					GTTCGCTCTTCCCCTTGGCAT	0.572													12	25					0	0	0.013537	0	0
EPX	8288	broad.mit.edu	37	17	56270888	56270888	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:56270888C>T	uc002ivq.2	+	3	413	c.327C>T	c.(325-327)TCC>TCT	p.S109S		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	109					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCCAGCGGTCCGGACCCTTCA	0.577													10	18					0	0	0.008291	0	0
LPO	4025	broad.mit.edu	37	17	56345158	56345158	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:56345158G>A	uc002ivt.2	+	13	2258	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	LPO_uc010wns.1_Missense_Mutation_p.E589K|LPO_uc010dcp.2_Missense_Mutation_p.E565K|LPO_uc010dcq.2_Missense_Mutation_p.E319K|LPO_uc010dcr.2_Missense_Mutation_p.E211K	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	648					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GTTCTGGTGGGAAAACCCTGG	0.567													18	21					0	0	0.010504	0	0
BZRAP1	9256	broad.mit.edu	37	17	56404969	56404969	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:56404969C>T	uc002ivx.3	-	1	1184	c.313G>A	c.(313-315)GAA>AAA	p.E105K	BZRAP1_uc010dcs.2_Missense_Mutation_p.E105K|BZRAP1_uc010wnt.1_Missense_Mutation_p.E105K|uc010dct.1_5'Flank|uc010dcu.1_5'Flank	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	105						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCCTCCACTTCCTCATCCTCT	0.642													14	30					0	0	0.004007	0	0
TANC2	26115	broad.mit.edu	37	17	61498857	61498857	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:61498857C>T	uc002jal.3	+	25	5537	c.5514C>T	c.(5512-5514)ACC>ACT	p.T1838T	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Silent_p.T949T	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1838							binding			ovary(2)	2						GTGAGCCCACCCGATCCAGGA	0.547													18	26					0	0	0.006122	0	0
KCNH6	81033	broad.mit.edu	37	17	61601531	61601531	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:61601531G>A	uc002jay.2	+	2	188	c.108G>A	c.(106-108)ATG>ATA	p.M36I	KCNH6_uc002jax.1_Missense_Mutation_p.M36I|KCNH6_uc010wpl.1_5'UTR|KCNH6_uc010wpm.1_Missense_Mutation_p.M36I|KCNH6_uc002jaz.1_Missense_Mutation_p.M36I	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	36	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ATGCTCAGATGGAGAACTGCG	0.572													63	84					0	0	0.014410	0	0
ERN1	2081	broad.mit.edu	37	17	62137897	62137897	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:62137897G>A	uc002jdz.2	-	11	1251	c.1138C>T	c.(1138-1140)CCC>TCC	p.P380S		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	380	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						AGATTGTTGGGAAATCTCTCC	0.468													29	51					0	0	0.010818	0	0
SMURF2	64750	broad.mit.edu	37	17	62557655	62557655	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:62557655G>A	uc002jep.1	-	12	1667	c.1279C>T	c.(1279-1281)CGT>TGT	p.R427C	SMURF2_uc002jeq.1_Missense_Mutation_p.R186C|SMURF2_uc002jer.1_Missense_Mutation_p.R186C	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	427	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			TCTTCTCCACGAAATTTTATC	0.363													11	24					0	0	0.003163	0	0
SMURF2	64750	broad.mit.edu	37	17	62594524	62594524	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:62594524G>A	uc002jep.1	-	3	564	c.176C>T	c.(175-177)CCA>CTA	p.P59L	SMURF2_uc002jeq.1_5'UTR|SMURF2_uc002jer.1_5'UTR	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	59	C2.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			ATTCCACTTTGGATCAAGCGT	0.353													27	40					0	0	0.009535	0	0
APOH	350	broad.mit.edu	37	17	64208268	64208268	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:64208268C>T	uc002jfn.3	-	8	1080	c.1021G>A	c.(1021-1023)GAT>AAT	p.D341N		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	341	Sushi-like.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GGCTTTACATCGGATGCATCA	0.343													8	21					0	0	0.004482	0	0
KPNA2	3838	broad.mit.edu	37	17	66033503	66033503	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:66033503T>C	uc002jgk.2	+	3	237	c.105T>C	c.(103-105)AAT>AAC	p.N35N	KPNA2_uc002jgl.2_Silent_p.N35N	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	35	IBB.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TAGAGGTCAATGTGGAGCTGA	0.438													46	42					0	0	0.014410	0	0
ABCA5	23461	broad.mit.edu	37	17	67247926	67247926	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:67247926G>A	uc002jif.2	-	34	5715	c.4497C>T	c.(4495-4497)GTC>GTT	p.V1499V	ABCA5_uc002jib.2_Silent_p.V465V|ABCA5_uc002jic.2_Silent_p.V722V|ABCA5_uc002jid.2_Silent_p.V416V|ABCA5_uc002jie.2_Intron|ABCA5_uc002jig.2_Silent_p.V1499V	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1499	ABC transporter 2.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CTCGATCACAGACAGCCTCTG	0.438													25	23					0	0	0.007291	0	0
SDK2	54549	broad.mit.edu	37	17	71394260	71394260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:71394260G>A	uc010dfm.2	-	24	3268	c.3268C>T	c.(3268-3270)CAG>TAG	p.Q1090*	SDK2_uc002jjt.3_Nonsense_Mutation_p.Q249*|SDK2_uc010dfn.2_Nonsense_Mutation_p.Q769*	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1090	Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGCAGGGTCTGGATCTTTCTA	0.627													14	25					0	0	0.002450	0	0
SDK2	54549	broad.mit.edu	37	17	71433941	71433942	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:71433941_71433942CC>TT	uc010dfm.2	-	8	936_937	c.936_937GG>AA	c.(934-939)AAGGAG>AAAAAG	p.E313K	SDK2_uc010dfn.2_5'UTR	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	313	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						CTTTCTGGCTCCTTGACAAACT	0.589													25	29					0	0	0.004672	0	0
KIAA0195	9772	broad.mit.edu	37	17	73488762	73488762	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:73488762C>T	uc002jnz.3	+	15	2079	c.1804C>T	c.(1804-1806)CTG>TTG	p.L602L	KIAA0195_uc010wsa.1_Silent_p.L612L|KIAA0195_uc010wsb.1_Silent_p.L242L|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	602					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CACCGAGCGCCTGTGCCGATT	0.637													27	59					0	0	0.007291	0	0
PRPSAP1	5635	broad.mit.edu	37	17	74326656	74326656	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:74326656G>A	uc010wta.1	-	5	1001	c.555C>T	c.(553-555)TTC>TTT	p.F185F	PRPSAP1_uc010wtb.1_Silent_p.F82F	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	156					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						ACTGAAGCAGGAAAGGTGAGG	0.393													15	34					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	17	78264460	78264460	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:78264460A>T	uc002jyf.2	+	7	1347	c.1204A>T	c.(1204-1206)ATC>TTC	p.I402F	uc002jyg.1_Missense_Mutation_p.I133F	NM_020954	NP_066005			hypothetical protein LOC57714																		TAAAGTCTTCATCAGAGGAGG	0.517													14	29					0	0	0.016723	0	0
Unknown	0	broad.mit.edu	37	17	78264462	78264462	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:78264462C>T	uc002jyf.2	+	7	1349	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I	uc002jyg.1_Silent_p.I133I	NM_020954	NP_066005			hypothetical protein LOC57714																		AAGTCTTCATCAGAGGAGGAG	0.522													15	29					0	0	0.002450	0	0
RNF213	57674	broad.mit.edu	37	17	78350260	78350260	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:78350260C>T	uc002jyh.1	+	27	7787	c.7564C>T	c.(7564-7566)CAT>TAT	p.H2522Y	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.H904Y	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			AATGGCCATTCATGCTGCAGC	0.542													19	44					0	0	0.008871	0	0
RPTOR	57521	broad.mit.edu	37	17	78933890	78933890	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:78933890G>A	uc002jyt.1	+	30	4295	c.3490G>A	c.(3490-3492)GGC>AGC	p.G1164S	RPTOR_uc010wug.1_Missense_Mutation_p.G1006S|RPTOR_uc002jyu.1_Missense_Mutation_p.G57S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1164	WD 4.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CATCCCTACGGGCGCAGACAG	0.642													7	15					0	0	0.004482	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79954519	79954519	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:79954519C>T	uc002kcx.2	+	7	827	c.730C>T	c.(730-732)CCT>TCT	p.P244S	ASPSCR1_uc002kcw.1_Missense_Mutation_p.P244S|ASPSCR1_uc002kcy.2_Missense_Mutation_p.P244S|ASPSCR1_uc002kcz.2_Intron|ASPSCR1_uc002kda.2_Missense_Mutation_p.P167S|ASPSCR1_uc002kdb.1_Missense_Mutation_p.P167S	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	244							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCCCTTTGTTCCTTTCTCGGG	0.652			T	TFE3	alveolar soft part sarcoma								20	12					0	0	0.010504	0	0
ZNF750	79755	broad.mit.edu	37	17	80788605	80788605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:80788605C>T	uc002kga.2	-	3	1896	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	529						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TACGTGGGTTCGTGGGTGGCT	0.617													21	40					0	0	0.012319	0	0
LRRC30	339291	broad.mit.edu	37	18	7231687	7231688	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:7231687_7231688CC>TT	uc010wzk.1	+	1	551_552	c.551_552CC>TT	c.(550-552)TCC>TTT	p.S184F		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	184	LRR 5.									ovary(1)|liver(1)	2						TGTGTGTTCTCCCTGAAGGAAC	0.554													55	20					0	0	0.004672	0	0
KIAA0802	23255	broad.mit.edu	37	18	8825200	8825200	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:8825200C>T	uc002knr.2	+	15	3834	c.3692C>T	c.(3691-3693)CCA>CTA	p.P1231L	KIAA0802_uc002knq.2_Missense_Mutation_p.P1190L|KIAA0802_uc002kns.2_Missense_Mutation_p.P571L	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1541											0						GGAGGCCCTCCAGAACCCATG	0.677													10	2					0	0	0.006214	0	0
APCDD1	147495	broad.mit.edu	37	18	10471870	10471870	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:10471870T>A	uc002kom.3	+	3	940	c.586T>A	c.(586-588)TGT>AGT	p.C196S		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	196	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		GGAGAACGGCTGTGAGTGCAC	0.622													70	25					0	0	0.014410	0	0
FAM38B	63895	broad.mit.edu	37	18	10672856	10672856	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:10672856C>T	uc002kor.3	-	13	1848	c.1708G>A	c.(1708-1710)GAT>AAT	p.D570N	FAM38B_uc002koq.2_Missense_Mutation_p.D405N	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2613						integral to membrane	ion channel activity			ovary(1)	1						ATGGTAATATCCATGAAATTA	0.353													9	6					0	0	0.006214	0	0
MIB1	57534	broad.mit.edu	37	18	19424197	19424197	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:19424197G>A	uc002ktq.2	+	15	2194	c.2194G>A	c.(2194-2196)GAG>AAG	p.E732K	MIB1_uc002ktp.2_Missense_Mutation_p.E371K	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	732					Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TGCTGCCTGGGAGCCATCCAA	0.438													7	18					0	0	0.001984	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995915	19995915	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:19995915C>T	uc002ktv.1	-	1	1964	c.1860G>A	c.(1858-1860)ATG>ATA	p.M620I		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	620						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTGACCCATCCATTTTATCCA	0.398													64	50					0	0	0.014410	0	0
RIOK3	8780	broad.mit.edu	37	18	21044211	21044211	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:21044211G>A	uc002kui.3	+	4	984	c.367G>A	c.(367-369)GAA>AAA	p.E123K	RIOK3_uc010dls.2_Missense_Mutation_p.E123K|RIOK3_uc010xas.1_Missense_Mutation_p.E107K|RIOK3_uc010xat.1_5'Flank	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	123					chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GCATCCTTATGAAGACAGCGA	0.398													6	17					0	0	0.001984	0	0
DSC1	1823	broad.mit.edu	37	18	28728536	28728536	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:28728536C>T	uc002kwn.2	-	6	959	c.697G>A	c.(697-699)GAA>AAA	p.E233K	DSC1_uc002kwm.2_Missense_Mutation_p.E233K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	233	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTATCATCTTCAATTTTGATG	0.373													12	41					0	0	0.016723	0	0
DSG1	1828	broad.mit.edu	37	18	28914104	28914104	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:28914104G>A	uc002kwp.2	+	8	1156	c.944G>A	c.(943-945)GGA>GAA	p.G315E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	315	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGAAATGAAGGAAATTGGTTT	0.299													9	58					0	0	0.004482	0	0
FAM59A	64762	broad.mit.edu	37	18	29867420	29867420	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:29867420G>A	uc002kxl.2	-	4	1196	c.1140C>T	c.(1138-1140)ACC>ACT	p.T380T	FAM59A_uc002kxk.1_Silent_p.T380T	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	380										ovary(1)|skin(1)	2						GGAAGGACTGGGTGAGCTCAT	0.572													5	38					0	0	0.014758	0	0
C18orf34	374864	broad.mit.edu	37	18	30926233	30926233	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:30926233C>T	uc002kxn.2	-	8	742	c.600G>A	c.(598-600)ATG>ATA	p.M200I	C18orf34_uc010xbr.1_Missense_Mutation_p.M200I|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.M200I|C18orf34_uc002kxp.2_Missense_Mutation_p.M200I	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	200	Potential.									ovary(1)	1						AGTCAATTTTCATGTTAATCA	0.383													10	40					0	0	0.008291	0	0
GALNT1	2589	broad.mit.edu	37	18	33272216	33272216	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:33272216T>C	uc010dmu.2	+	9	1284	c.1231T>C	c.(1231-1233)TTT>CTT	p.F411L	GALNT1_uc002kyz.3_Missense_Mutation_p.F351L|GALNT1_uc002kzb.2_Missense_Mutation_p.F411L	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	411	Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ATGCAAACCTTTTTCCTGGTA	0.328													19	73					0	0	0.012319	0	0
FHOD3	80206	broad.mit.edu	37	18	34298434	34298434	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:34298434C>T	uc002kzt.1	+	15	2694	c.2597C>T	c.(2596-2598)CCT>CTT	p.P866L	FHOD3_uc002kzs.1_Missense_Mutation_p.P883L|FHOD3_uc010dmz.1_Missense_Mutation_p.P598L|FHOD3_uc010dna.1_Missense_Mutation_p.P186L	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	866	Pro-rich.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GTTCCTCCTCCTCCAGTGTTC	0.577													24	15					0	0	0.016522	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566849	45566849	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:45566849G>A	uc002lda.2	-	1	646	c.630C>T	c.(628-630)TCC>TCT	p.S210S	ZBTB7C_uc002ldb.2_Silent_p.S210S|ZBTB7C_uc010dnu.2_Silent_p.S219S|ZBTB7C_uc010dnv.2_Silent_p.S232S|ZBTB7C_uc010dnw.2_Silent_p.S210S|ZBTB7C_uc010dnx.1_Silent_p.S210S|ZBTB7C_uc010dny.1_Silent_p.S210S|ZBTB7C_uc010dnz.1_Silent_p.S232S|ZBTB7C_uc010dob.1_Silent_p.S210S|ZBTB7C_uc010doc.1_Silent_p.S219S|ZBTB7C_uc010dod.1_Silent_p.S232S|ZBTB7C_uc010doe.1_Silent_p.S210S|ZBTB7C_uc010dof.1_Silent_p.S210S|ZBTB7C_uc010dog.1_Silent_p.S210S|ZBTB7C_uc010doh.1_Silent_p.S219S|ZBTB7C_uc010doi.1_Silent_p.S210S|ZBTB7C_uc010doj.1_Silent_p.S219S|ZBTB7C_uc010dok.1_Silent_p.S259S|ZBTB7C_uc010dol.1_Silent_p.S219S|ZBTB7C_uc010doa.1_Silent_p.S232S|ZBTB7C_uc010don.1_Silent_p.S218S|ZBTB7C_uc010doo.1_Silent_p.S210S|ZBTB7C_uc010dop.1_Silent_p.S210S|ZBTB7C_uc010doq.1_Silent_p.S219S|ZBTB7C_uc010dor.1_Silent_p.S232S|ZBTB7C_uc010dos.1_Silent_p.S210S|ZBTB7C_uc010dot.1_Silent_p.S210S|ZBTB7C_uc010dou.1_Silent_p.S219S|ZBTB7C_uc010dom.1_Silent_p.S219S	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	210						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CAGCCTGGAAGGAGTCAGGGA	0.587													30	23					0	0	0.008361	0	0
DCC	1630	broad.mit.edu	37	18	50731608	50731608	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:50731608A>T	uc002lfe.1	+	10	2183	c.1596A>T	c.(1594-1596)GAA>GAT	p.E532D	DCC_uc010xdr.1_Missense_Mutation_p.E380D|DCC_uc010dpf.1_Missense_Mutation_p.E187D	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	532	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GGCCAGTAGAAAACCTGCAAG	0.388													12	107					0	0	0.010729	0	0
DCC	1630	broad.mit.edu	37	18	50918084	50918084	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:50918084G>A	uc002lfe.1	+	17	3102	c.2515G>A	c.(2515-2517)GAT>AAT	p.D839N	DCC_uc010xdr.1_Splice_Site_p.D667_splice|DCC_uc010dpf.1_Splice_Site_p.D474_splice	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	839	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCGGTCCCAGATCTCTCCAC	0.468													16	111					0	0	0.010504	0	0
ALPK2	115701	broad.mit.edu	37	18	56247653	56247653	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:56247653C>A	uc002lhj.3	-	4	569	c.355G>T	c.(355-357)GAT>TAT	p.D119Y		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	119							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCCCTGTCATCTTCCAGGTTA	0.428													19	115					1.50039e-11	1.72131e-11	0.012319	1	0
RNF152	220441	broad.mit.edu	37	18	59483240	59483240	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:59483240C>T	uc002lih.1	-	2	869	c.457G>A	c.(457-459)GAG>AAG	p.E153K		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	153					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				TCCTGCTCCTCCTCCACCGCC	0.657													7	41					0	0	0.003080	0	0
RNF152	220441	broad.mit.edu	37	18	59483414	59483414	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:59483414G>A	uc002lih.1	-	2	695	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	95					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CCATTGCTGGGAAGTTTGATG	0.647													9	32					0	0	0.004482	0	0
KIAA1468	57614	broad.mit.edu	37	18	59947636	59947636	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:59947636T>C	uc002lil.2	+	23	3226	c.3011T>C	c.(3010-3012)GTT>GCT	p.V1004A	KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1004	HEAT 3.						binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				GACAAGCGGGTTGCTCCGGCC	0.443													32	26					0	0	0.005524	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310695	61310695	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:61310695C>T	uc002ljf.2	-	2	203	c.117G>A	c.(115-117)GGG>GGA	p.G39G	SERPINB4_uc002lje.2_Silent_p.G39G|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	39					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AGAGGACCATCCCTAATGCTG	0.423													43	24					0	0	0.014410	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471606	61471606	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:61471606C>T	uc002ljl.2	+	8	976	c.880C>T	c.(880-882)CTA>TTA	p.L294L	SERPINB7_uc002ljm.2_Silent_p.L294L|SERPINB7_uc010xet.1_Silent_p.L277L|SERPINB7_uc010dqg.2_Silent_p.L294L	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	294					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TTTGAGAGCCCTAGGGCTGAA	0.393													12	20					0	0	0.016723	0	0
CCDC102B	79839	broad.mit.edu	37	18	66678260	66678260	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr18:66678260G>A	uc002lkk.2	+	9	1576	c.1353G>A	c.(1351-1353)GTG>GTA	p.V451V	CCDC102B_uc002lki.2_Silent_p.V451V	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	451	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ACAACCGAGTGGATCAAAATG	0.368													7	20					0	0	0.003080	0	0
SHC2	25759	broad.mit.edu	37	19	425190	425190	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:425190G>A	uc002loq.3	-	10	1216	c.1216C>T	c.(1216-1218)CCC>TCC	p.P406S	SHC2_uc002lop.3_Missense_Mutation_p.P147S	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	406	CH1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGTCCGGGGGGCCCCGGGCG	0.682													22	20					0	0	0.012319	0	0
CNN2	1265	broad.mit.edu	37	19	1032430	1032430	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:1032430C>T	uc002lqu.2	+	3	588	c.225C>T	c.(223-225)ATC>ATT	p.I75I	CNN2_uc002lqt.1_Silent_p.I75I|CNN2_uc010drz.1_Intron|CNN2_uc002lqv.2_Silent_p.I75I|CNN2_uc010xgb.1_Silent_p.I75I|CNN2_uc010xgc.1_Silent_p.I75I	NM_004368	NP_004359	Q99439	CNN2_HUMAN	calponin 2 isoform a	75	CH.				actomyosin structure organization|cellular response to mechanical stimulus|regulation of actin filament-based process	cell-cell junction|stress fiber	actin binding|calmodulin binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCCCAAGATCAACCGCTCCA	0.622													24	48					0	0	0.018920	0	0
EFNA2	1943	broad.mit.edu	37	19	1298561	1298561	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:1298561C>T	uc002lry.1	+	3	466	c.466C>T	c.(466-468)CCC>TCC	p.P156S		NM_001405	NP_001396	O43921	EFNA2_HUMAN	ephrin-A2 precursor	156					cell-cell signaling	anchored to membrane|plasma membrane	ephrin receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCACGCCTCCCAATGCTGT	0.642													6	11					0	0	0.001984	0	0
MUM1	84939	broad.mit.edu	37	19	1360408	1360408	+	Missense_Mutation	SNP	C	T	T	rs117812723	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:1360408C>T	uc010xgm.1	+	4	557	c.488C>T	c.(487-489)TCG>TTG	p.S163L	MUM1_uc010dsi.2_Missense_Mutation_p.S95L|MUM1_uc002lrz.2_Missense_Mutation_p.S164L|MUM1_uc002lsb.2_Missense_Mutation_p.S95L|MUM1_uc002lsc.1_Missense_Mutation_p.S95L			Q2TAK8	MUM1_HUMAN	SubName: Full=MUM1 protein;	163					chromatin organization|DNA repair	nucleus	nucleosome binding|protein binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTCAAGTTCGTTCACTTGT	0.557											OREG0025088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	20					0	0	0.013537	0	0
APC2	10297	broad.mit.edu	37	19	1460252	1460252	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:1460252A>G	uc002lsr.1	+	11	1584	c.1376A>G	c.(1375-1377)AAC>AGC	p.N459S	APC2_uc002lss.1_Missense_Mutation_p.N41S|APC2_uc002lst.1_Missense_Mutation_p.N459S|APC2_uc002lsu.1_Missense_Mutation_p.N458S|uc002lsv.2_5'Flank	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	459					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACCCGCTGAACCTGGCGCTG	0.642													19	36					0	0	0.010504	0	0
C19orf36	113177	broad.mit.edu	37	19	2098799	2098799	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:2098799A>G	uc002luw.1	+	8	627	c.550A>G	c.(550-552)ATG>GTG	p.M184V	C19orf36_uc002lux.1_Missense_Mutation_p.M184V|C19orf36_uc010xgw.1_3'UTR	NM_001039846	NP_001034935	Q1ZYL8	IZUM4_HUMAN	hypothetical protein LOC113177 isoform 3	184						extracellular region					0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGACACGAGCATGAGGTAAGG	0.632													13	17					0	0	0.003163	0	0
ZNF556	80032	broad.mit.edu	37	19	2878238	2878238	+	Missense_Mutation	SNP	G	A	A	rs35494032	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:2878238G>A	uc002lwp.1	+	4	1369	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	ZNF556_uc002lwq.2_Missense_Mutation_p.E427K	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	428	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGTAAATGCGAAAAATGTGG	0.448													36	58					0	0	0.005524	0	0
TLE6	79816	broad.mit.edu	37	19	2987089	2987089	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:2987089C>T	uc002lwu.2	+	6	425	c.25C>T	c.(25-27)CTC>TTC	p.L9F	TLE6_uc002lwt.2_Missense_Mutation_p.L132F|TLE6_uc010dtg.2_Missense_Mutation_p.L132F|TLE6_uc002lwv.2_5'Flank	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	9					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCGACTGGCTCCGGCGGCC	0.627													22	39					0	0	0.014323	0	0
S1PR4	8698	broad.mit.edu	37	19	3179830	3179830	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:3179830G>A	uc002lxg.2	+	1	1065	c.1040G>A	c.(1039-1041)GGA>GAA	p.G347E		NM_003775	NP_003766	O95977	S1PR4_HUMAN	sphingosine-1-phosphate receptor 4 precursor	347	Cytoplasmic (By similarity).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|skin(1)	2						GCTCACTCCGGAGCTTCCACC	0.692													32	42					0	0	0.017118	0	0
GIPC3	126326	broad.mit.edu	37	19	3589544	3589545	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:3589544_3589545GG>TT	uc002lyd.3	+	4	723_724	c.696_697GG>TT	c.(694-699)GTGGAG>GTTTAG	p.E233*		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	233										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCCACagtggaggaagcggt	0.297													17	33					0	0	0.004672	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3653369	3653369	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:3653369G>A	uc002lyj.1	-	7	897	c.840C>T	c.(838-840)TTC>TTT	p.F280F	PIP5K1C_uc010xhq.1_Silent_p.F280F|PIP5K1C_uc010xhr.1_Silent_p.F280F	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	280	PIPK.				axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		TGTCCTGCATGAAGTCCAGGT	0.642													23	18					0	0	0.014323	0	0
CREB3L3	84699	broad.mit.edu	37	19	4171149	4171149	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:4171149G>A	uc002lzl.2	+	8	1068	c.952G>A	c.(952-954)GCC>ACC	p.A318T	CREB3L3_uc002lzm.2_Missense_Mutation_p.A308T|CREB3L3_uc010xib.1_Missense_Mutation_p.A307T|CREB3L3_uc010xic.1_Missense_Mutation_p.S273N	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	318	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCAAGTCAGCCCAGACAGG	0.607													11	23					0	0	0.016723	0	0
ACER1	125981	broad.mit.edu	37	19	6306862	6306862	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:6306862C>T	uc002mel.2	-	6	736	c.658G>A	c.(658-660)GGC>AGC	p.G220S		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	220	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GTGACCATGCCATAAGGGAAG	0.597													6	13					0	0	0.001168	0	0
TUBB4	10382	broad.mit.edu	37	19	6496064	6496064	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:6496064G>A	uc002mfg.1	-	4	553	c.446C>T	c.(445-447)ACG>ATG	p.T149M	TUBB4_uc002mff.1_Missense_Mutation_p.T77M	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	149					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		GATGAGCAGCGTGCCCATTCC	0.642													23	28					0	0	0.016522	0	0
GPR108	56927	broad.mit.edu	37	19	6735965	6735965	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:6735965C>T	uc002mfp.2	-	3	291	c.245G>A	c.(244-246)GGG>GAG	p.G82E	GPR108_uc002mfn.2_5'UTR|GPR108_uc002mfo.3_5'UTR|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	82						integral to membrane					0						GAGACTGAACCCCACCTGGTG	0.552											OREG0025202	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	7					0	0	0.009096	0	0
CD209	30835	broad.mit.edu	37	19	7808068	7808068	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:7808068C>T	uc002mht.2	-	7	1139	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	CD209_uc010xju.1_Missense_Mutation_p.E197K|CD209_uc010dvp.2_Missense_Mutation_p.G296E|CD209_uc002mhr.2_Missense_Mutation_p.E334K|CD209_uc002mhs.2_Missense_Mutation_p.E288K|CD209_uc002mhu.2_Missense_Mutation_p.E266K|CD209_uc010dvq.2_Missense_Mutation_p.E352K|CD209_uc002mhq.2_Missense_Mutation_p.E358K|CD209_uc002mhv.2_Missense_Mutation_p.E334K|CD209_uc002mhx.2_Missense_Mutation_p.E314K|CD209_uc002mhw.2_Missense_Mutation_p.E222K|CD209_uc010dvr.2_Missense_Mutation_p.E122K	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	358	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCACTAAATTCCGCGCAGTCT	0.527													87	134					0	0	0.014410	0	0
FBN3	84467	broad.mit.edu	37	19	8196555	8196555	+	Missense_Mutation	SNP	C	T	T	rs138440561		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:8196555C>T	uc002mjf.2	-	14	1894	c.1873G>A	c.(1873-1875)GAG>AAG	p.E625K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	625	TB 3.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GAGCCCTTCTCGATGGCCCCA	0.682													25	22					0	0	0.005443	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8645854	8645854	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:8645854G>A	uc002mkj.1	-	26	3509	c.3235C>T	c.(3235-3237)CCC>TCC	p.P1079S	ADAMTS10_uc002mki.1_Missense_Mutation_p.P566S	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1079	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						AGCACCAGGGGGCAGTAGGCG	0.617											OREG0025220	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	17					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9048722	9048722	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9048722C>T	uc002mkp.2	-	5	33113	c.32909G>A	c.(32908-32910)GGG>GAG	p.G10970E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10972	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTTCTGTCCCATGACTGGT	0.478													19	41					0	0	0.007413	0	0
MUC16	94025	broad.mit.edu	37	19	9049710	9049710	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9049710G>A	uc002mkp.2	-	5	32125	c.31921C>T	c.(31921-31923)CCA>TCA	p.P10641S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10643	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATATTTGTTGGAATGGCTGAG	0.478													13	29					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9049823	9049823	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9049823G>A	uc002mkp.2	-	5	32012	c.31808C>T	c.(31807-31809)CCT>CTT	p.P10603L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10605	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCTCTGCAGGATGGATAAC	0.478													23	40					0	0	0.018920	0	0
MUC16	94025	broad.mit.edu	37	19	9064313	9064313	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9064313G>A	uc002mkp.2	-	3	23337	c.23133C>T	c.(23131-23133)CCC>CCT	p.P7711P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7713	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGGAGAGGGGGGGATATGTG	0.537													24	36					0	0	0.018920	0	0
MUC16	94025	broad.mit.edu	37	19	9067834	9067834	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9067834G>A	uc002mkp.2	-	3	19816	c.19612C>T	c.(19612-19614)CCT>TCT	p.P6538S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6540	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGATGAACAGGAGAAGACGGC	0.502													5	15					0	0	0.014758	0	0
MUC16	94025	broad.mit.edu	37	19	9071324	9071324	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9071324C>T	uc002mkp.2	-	3	16326	c.16122G>A	c.(16120-16122)GTG>GTA	p.V5374V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5376	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGGTTGTCACCAGAACAG	0.517													47	76					0	0	0.011902	0	0
MUC16	94025	broad.mit.edu	37	19	9072352	9072352	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9072352G>A	uc002mkp.2	-	3	15298	c.15094C>T	c.(15094-15096)CCC>TCC	p.P5032S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5034	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCACAGAGGGAGGACTTGTC	0.483													16	31					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9073021	9073021	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9073021C>T	uc002mkp.2	-	3	14629	c.14425G>A	c.(14425-14427)GAT>AAT	p.D4809N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4811	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATATGTCATCCAAAGTGTTG	0.463													20	30					0	0	0.014323	0	0
MUC16	94025	broad.mit.edu	37	19	9074696	9074696	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9074696C>T	uc002mkp.2	-	3	12954	c.12750G>A	c.(12748-12750)ACG>ACA	p.T4250T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4252	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTCCATATTCGTCACTGCTG	0.478													25	52					0	0	0.008361	0	0
OR1M1	125963	broad.mit.edu	37	19	9204705	9204705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9204705C>T	uc010xkj.1	+	1	785	c.785C>T	c.(784-786)CCC>CTC	p.P262L		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TATCTGTGTCCCTCCTCGGTC	0.557													38	56					0	0	0.009718	0	0
OR7D4	125958	broad.mit.edu	37	19	9325175	9325175	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:9325175G>A	uc002mla.1	-	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CGGCCAGTAGGAAAGTATCCA	0.527													17	25					0	0	0.004990	0	0
COL5A3	50509	broad.mit.edu	37	19	10085029	10085029	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:10085029C>T	uc002mmq.1	-	46	3484	c.3398G>A	c.(3397-3399)GGA>GAA	p.G1133E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1133	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCGTCATCTCCTTTCTGCCC	0.562													14	24					0	0	0.002450	0	0
KRI1	65095	broad.mit.edu	37	19	10670361	10670361	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:10670361G>A	uc002moy.1	-	11	978	c.969C>T	c.(967-969)ATC>ATT	p.I323I	KRI1_uc002mow.1_5'UTR|KRI1_uc002mox.1_Silent_p.I319I	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	323	Glu-rich.									ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			CGGAGGACGCGATGCTGCGTG	0.617													14	20					0	0	0.003163	0	0
SLC44A2	57153	broad.mit.edu	37	19	10747040	10747040	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:10747040C>T	uc002mpf.2	+	15	1414	c.1275C>T	c.(1273-1275)GCC>GCT	p.A425A	SLC44A2_uc002mpe.3_Silent_p.A423A|SLC44A2_uc002mpg.1_Silent_p.A145A|SLC44A2_uc002mph.2_5'UTR	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	425	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	GCCCCAATGCCCGTTGCCAGT	0.592													25	67					0	0	0.003954	0	0
SMARCA4	6597	broad.mit.edu	37	19	11123704	11123704	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:11123704A>G	uc002mqf.3	+	16	2638	c.2354A>G	c.(2353-2355)AAG>AGG	p.K785R	SMARCA4_uc010dxp.2_Missense_Mutation_p.K785R|SMARCA4_uc010dxo.2_Missense_Mutation_p.K785R|SMARCA4_uc002mqg.1_Missense_Mutation_p.K785R|SMARCA4_uc010dxq.2_Missense_Mutation_p.K785R|SMARCA4_uc010dxr.2_Missense_Mutation_p.K785R|SMARCA4_uc002mqj.3_Missense_Mutation_p.K785R|SMARCA4_uc010dxs.2_Missense_Mutation_p.K785R|SMARCA4_uc010dxt.1_Missense_Mutation_p.K5R	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	785	Helicase ATP-binding.|ATP (Potential).				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GGCCTGGGGAAGACCATCCAG	0.577			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				11	23					0	0	0.008291	0	0
LPPR2	64748	broad.mit.edu	37	19	11470278	11470278	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:11470278C>T	uc002mre.1	+	4	474	c.137C>T	c.(136-138)ACC>ATC	p.T46I	LPPR2_uc002mrf.1_Intron|LPPR2_uc010dxy.1_5'Flank	NM_022737	NP_073574	Q96GM1	LPPR2_HUMAN	lipid phosphate phosphatase-related protein type	46						integral to membrane	phosphatidate phosphatase activity			large_intestine(1)	1						CCTGTGCACACCCAGGGATTC	0.617													15	25					0	0	0.003163	0	0
RAD23A	5886	broad.mit.edu	37	19	13063555	13063556	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:13063555_13063556GG>AA	uc002mvw.1	+	8	975_976	c.866_867GG>AA	c.(865-867)GGG>GAA	p.G289E	RAD23A_uc002mvx.1_Missense_Mutation_p.G288E|RAD23A_uc002mvz.1_Missense_Mutation_p.G288E|RAD23A_uc002mwa.1_Intron|RAD23A_uc002mvy.1_Missense_Mutation_p.G123E|RAD23A_uc010xmw.1_Missense_Mutation_p.G124E	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	289					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						GAGCCCCCTGGGGAGCTGGCGG	0.619								NER					12	31					0	0	0.004672	0	0
EMR2	30817	broad.mit.edu	37	19	14883198	14883198	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:14883198G>A	uc002mzp.1	-	5	767	c.311C>T	c.(310-312)TCT>TTT	p.S104F	EMR2_uc010xnw.1_Missense_Mutation_p.S104F|EMR2_uc002mzo.1_Missense_Mutation_p.S104F|EMR2_uc002mzq.1_Missense_Mutation_p.S104F|EMR2_uc002mzr.1_Missense_Mutation_p.S104F|EMR2_uc002mzs.1_Missense_Mutation_p.S104F|EMR2_uc002mzt.1_Missense_Mutation_p.S104F|EMR2_uc002mzu.1_Missense_Mutation_p.S104F|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	104	Extracellular (Potential).|EGF-like 2; calcium-binding.				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						TTTTGCCCCAGAAACAGGCTC	0.522													22	49					0	0	0.003954	0	0
OR7A10	390892	broad.mit.edu	37	19	14952173	14952173	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:14952173C>T	uc002mzx.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					TGAGGGATTTCCATGTGTGTA	0.433													9	31					0	0	0.004482	0	0
SLC1A6	6511	broad.mit.edu	37	19	15065139	15065139	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:15065139G>A	uc002naa.1	-	7	1180	c.1172C>T	c.(1171-1173)TCG>TTG	p.S391L	SLC1A6_uc010dzu.1_Missense_Mutation_p.S313L|SLC1A6_uc010xod.1_Missense_Mutation_p.S327L	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	391					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CAGCGTTGCCGAGCTGGGGGA	0.697													20	25					0	0	0.010504	0	0
OR10H1	26539	broad.mit.edu	37	19	15918703	15918703	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:15918703C>G	uc002nbq.2	-	1	234	c.145G>C	c.(145-147)GTC>CTC	p.V49L		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCGCTCCAGACGGTGGCCATG	0.617													12	32					0	0	0.007413	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025151	16025151	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:16025151G>A	uc002nbu.2	-	12	1397	c.1361C>T	c.(1360-1362)TCA>TTA	p.S454L	CYP4F11_uc010eab.1_Silent_p.V432V|CYP4F11_uc002nbt.2_Missense_Mutation_p.S454L	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	454					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AGCCAGAGGTGACCTCTCCTT	0.577													50	88					0	0	0.014410	0	0
AP1M1	8907	broad.mit.edu	37	19	16314426	16314426	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:16314426C>T	uc002ndu.2	+	2	372	c.199C>T	c.(199-201)CTG>TTG	p.L67L	AP1M1_uc002ndv.2_Silent_p.L67L|AP1M1_uc010xpd.1_Silent_p.L67L	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	67					cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						CAACCTGTATCGTATCCCTTT	0.597													30	35					0	0	0.013726	0	0
CALR3	125972	broad.mit.edu	37	19	16591475	16591475	+	Missense_Mutation	SNP	C	T	T	rs143334090		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:16591475C>T	uc002ned.2	-	8	1024	c.961G>A	c.(961-963)GAT>AAT	p.D321N	MED26_uc002nee.2_RNA	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	321	C-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						TACTCTTCATCATCTGTGATC	0.358													12	20					0	0	0.016723	0	0
FAM125A	93343	broad.mit.edu	37	19	17534589	17534589	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:17534589C>T	uc002ngo.1	+	6	654	c.621C>T	c.(619-621)TCC>TCT	p.S207S	FAM125A_uc002ngp.1_Silent_p.S115S|FAM125A_uc002ngq.1_Silent_p.S103S	NM_138401	NP_612410	Q96EY5	F125A_HUMAN	family with sequence similarity 125, member A	207	Interaction with TSG101, VPS37B and VPS28.				protein transport	late endosome membrane|microtubule organizing center|nucleus	SH3 domain binding				0						ACGAGGCCTCCAGCCTCTATG	0.587													14	25					0	0	0.002450	0	0
CILP2	148113	broad.mit.edu	37	19	19655723	19655723	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:19655723G>A	uc002nmv.3	+	8	2454	c.2369G>A	c.(2368-2370)GGC>GAC	p.G790D	CILP2_uc002nmw.3_Missense_Mutation_p.G796D	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	790						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GGCCCCAATGGCGCCTGCCTC	0.741													3	10					0	0	0.014758	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766714	19766714	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:19766714G>A	uc002nnh.3	-	9	1270	c.1242C>T	c.(1240-1242)GTC>GTT	p.V414V	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Silent_p.V296V	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	414	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CGGTCCGCAGGACGTAGGCCA	0.652													4	5					0	0	0.014758	0	0
ZNF101	94039	broad.mit.edu	37	19	19790846	19790846	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:19790846C>T	uc002nni.1	+	4	1158	c.1048C>T	c.(1048-1050)CCC>TCC	p.P350S	ZNF101_uc010ecg.1_Missense_Mutation_p.P230S|ZNF101_uc002nnj.1_Missense_Mutation_p.P230S	NM_033204	NP_149981	Q8IZC7	ZN101_HUMAN	zinc finger protein 101	350	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTTCAATTATCCCAGTTGTTT	0.408													13	16					0	0	0.002450	0	0
ZNF506	440515	broad.mit.edu	37	19	19906328	19906328	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:19906328C>T	uc010eci.2	-	4	516	c.368G>A	c.(367-369)TGT>TAT	p.C123Y	ZNF506_uc002nog.2_Intron|ZNF506_uc002noh.3_Missense_Mutation_p.C91Y	NM_001099269	NP_001092739	Q5JVG8	ZN506_HUMAN	zinc finger protein 506 isoform 1	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding				0						GTGCACTGGACACTCATCTAC	0.308													16	34					0	0	0.008871	0	0
ZNF90	7643	broad.mit.edu	37	19	20228855	20228855	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:20228855G>A	uc002nor.2	+	4	631	c.492G>A	c.(490-492)AAG>AAA	p.K164K	ZNF90_uc002nos.1_Intron|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	164						Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACAGACATAAGATAAGAGATA	0.343													6	5					0	0	0.001168	0	0
ZNF430	80264	broad.mit.edu	37	19	21240397	21240397	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:21240397C>T	uc002npj.2	+	5	1393	c.1283C>T	c.(1282-1284)CCC>CTC	p.P428L	ZNF430_uc002npk.2_Missense_Mutation_p.P427L	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	428					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GGAGAGAAACCCTACAAATGT	0.368													5	7					0	0	0.014758	0	0
ZNF99	7652	broad.mit.edu	37	19	22939414	22939414	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:22939414T>A	uc010xrh.1	-	7	2757	c.2757A>T	c.(2755-2757)GAA>GAT	p.E919D		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGCCACATTCTTCACATTTGT	0.368													10	19					0	0	0.008291	0	0
CCDC123	84902	broad.mit.edu	37	19	33406353	33406353	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:33406353C>T	uc002nty.2	-	14	1544	c.1455G>A	c.(1453-1455)GAG>GAA	p.E485E	CCDC123_uc002ntx.2_Silent_p.E238E|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Silent_p.E484E	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	485	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					GTTCCCTGTTCTCCGCCAGCT	0.428													25	46					0	0	0.016522	0	0
ZNF599	148103	broad.mit.edu	37	19	35251315	35251315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:35251315G>A	uc010edn.1	-	4	779	c.391C>T	c.(391-393)CAG>TAG	p.Q131*	ZNF599_uc010edm.1_Nonsense_Mutation_p.Q94*	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTCCCTTCCTGAATTTTTATT	0.453													32	43					0	0	0.013726	0	0
ZNF345	25850	broad.mit.edu	37	19	37368501	37368502	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:37368501_37368502CC>TT	uc002oex.2	+	3	1147_1148	c.769_770CC>TT	c.(769-771)CCA>TTA	p.P257L	ZNF345_uc002oey.3_Missense_Mutation_p.P257L|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	257					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CGGTGAGAAACCATATATATGT	0.406													8	18					0	0	0.004672	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643591	37643591	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:37643591G>A	uc002ofo.1	-	5	1441	c.1210C>T	c.(1210-1212)CAT>TAT	p.H404Y	ZNF585A_uc002ofm.1_Missense_Mutation_p.H349Y|ZNF585A_uc002ofn.1_Missense_Mutation_p.H349Y	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	404	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCCTGTATGAATTCTCTGA	0.408													23	28					0	0	0.003954	0	0
ZNF569	148266	broad.mit.edu	37	19	37905286	37905286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:37905286G>A	uc002ogi.2	-	6	832	c.274C>T	c.(274-276)CAG>TAG	p.Q92*	ZNF569_uc002ogh.2_5'UTR|ZNF569_uc002ogj.2_Nonsense_Mutation_p.Q116*	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	92					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGTCTGTCCTGGTTTTTCTGA	0.308													20	28					0	0	0.008871	0	0
ZNF573	126231	broad.mit.edu	37	19	38230610	38230610	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:38230610G>A	uc002ohe.2	-	4	803	c.781C>T	c.(781-783)CTT>TTT	p.L261F	ZNF573_uc010efs.2_Missense_Mutation_p.L174F|ZNF573_uc002ohd.2_Missense_Mutation_p.L259F|ZNF573_uc002ohf.2_Missense_Mutation_p.L203F|ZNF573_uc002ohg.2_Missense_Mutation_p.L173F	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	241	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TGAATTCTAAGATGTCCACCT	0.423													21	33					0	0	0.014323	0	0
CATSPERG	57828	broad.mit.edu	37	19	38860892	38860892	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:38860892C>T	uc002oih.3	+	28	3294	c.3207C>T	c.(3205-3207)ATC>ATT	p.I1069I	CATSPERG_uc002oig.3_Silent_p.I1029I|CATSPERG_uc002oif.3_Silent_p.I709I|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1069	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CCCTTTTCATCATCATGGTGA	0.577													16	10					0	0	0.004007	0	0
RYR1	6261	broad.mit.edu	37	19	38987054	38987054	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:38987054C>T	uc002oit.2	+	41	6799	c.6669C>T	c.(6667-6669)ATC>ATT	p.I2223I	RYR1_uc002oiu.2_Silent_p.I2223I|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2223	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCAGGAGATCCGCTTCCCCA	0.647													12	31					0	0	0.013537	0	0
RYR1	6261	broad.mit.edu	37	19	38996005	38996005	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:38996005C>T	uc002oit.2	+	53	8497	c.8367C>T	c.(8365-8367)CCC>CCT	p.P2789P	RYR1_uc002oiu.2_Silent_p.P2789P|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2789	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGACCCACCCCATGCTGAGGC	0.557													6	10					0	0	0.001168	0	0
MAP4K1	11184	broad.mit.edu	37	19	39090785	39090785	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:39090785G>A	uc002oix.1	-	21	1648	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	MAP4K1_uc002oiw.1_Silent_p.L101L|MAP4K1_uc002oiy.1_Silent_p.L514L|MAP4K1_uc010xug.1_Silent_p.L176L	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	514	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCCAGGAGCAGGTGCTGGTCT	0.602													6	24					0	0	0.003080	0	0
TIMM50	92609	broad.mit.edu	37	19	39976354	39976354	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:39976354C>T	uc002olu.1	+	6	841	c.708C>T	c.(706-708)TGC>TGT	p.C236C	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_5'UTR	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	133	Mitochondrial intermembrane (Potential).				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCAGCCCTTGCCTTCTCCCAG	0.627													25	35					0	0	0.006320	0	0
FCGBP	8857	broad.mit.edu	37	19	40363205	40363205	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:40363205C>T	uc002omp.3	-	32	14873	c.14865G>A	c.(14863-14865)CAG>CAA	p.Q4955Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4955	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCTTGGTCGTCTGCAGAACCA	0.667													11	17					0	0	0.010729	0	0
ZNF546	339327	broad.mit.edu	37	19	40512005	40512005	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:40512005C>T	uc002oms.2	+	4	343	c.87C>T	c.(85-87)CCC>CCT	p.P29P	ZNF546_uc002omt.2_Silent_p.P3P	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	29					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CCCCCCAGCCCCGGTTTCTCT	0.418													27	27					0	0	0.005443	0	0
SPTBN4	57731	broad.mit.edu	37	19	41063266	41063266	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:41063266C>T	uc002ony.2	+	26	5713	c.5627C>T	c.(5626-5628)ACC>ATC	p.T1876I	SPTBN4_uc002onx.2_Missense_Mutation_p.T1876I|SPTBN4_uc002onz.2_Missense_Mutation_p.T1876I|SPTBN4_uc010egx.2_Missense_Mutation_p.T619I|SPTBN4_uc002ooa.2_Missense_Mutation_p.T552I	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1876	Spectrin 16.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ATGCAGCGGACCCTGAGAGCC	0.682													19	38					0	0	0.016522	0	0
EGLN2	112398	broad.mit.edu	37	19	41307069	41307069	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:41307069C>T	uc010ehd.2	+	8	1593	c.592C>T	c.(592-594)CTG>TTG	p.L198L	EGLN2_uc002opg.3_Silent_p.L198L|EGLN2_uc002oph.2_Silent_p.L198L|EGLN2_uc002opi.2_Silent_p.L198L	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	198					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	GGACAGCTTCCTGGGGGCAGC	0.692													40	76					0	0	0.013114	0	0
BCKDHA	593	broad.mit.edu	37	19	41928208	41928208	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:41928208C>T	uc002oqq.2	+	6	815	c.786C>T	c.(784-786)TTC>TTT	p.F262F	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Silent_p.F296F|BCKDHA_uc002oqp.1_Silent_p.F154F|BCKDHA_uc002oqr.2_Silent_p.F262F|BCKDHA_uc010xvz.1_Silent_p.F240F	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	262					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CCATCATCTTCTTCTGCCGGA	0.622													13	44					0	0	0.004007	0	0
ATP1A3	478	broad.mit.edu	37	19	42492102	42492102	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:42492102G>A	uc002osg.2	-	4	497	c.343C>T	c.(343-345)CCC>TCC	p.P115S	ATP1A3_uc010xwf.1_Missense_Mutation_p.P126S|ATP1A3_uc010xwg.1_Missense_Mutation_p.P85S|ATP1A3_uc010xwh.1_Missense_Mutation_p.P128S|ATP1A3_uc002osh.2_Missense_Mutation_p.P115S	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	115	Extracellular (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TCACCAGAGGGGTCGTCCTCG	0.582													29	51					0	0	0.008361	0	0
ATP1A3	478	broad.mit.edu	37	19	42492526	42492526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:42492526C>T	uc002osg.2	-	3	251	c.97G>A	c.(97-99)GAG>AAG	p.E33K	ATP1A3_uc010xwf.1_Missense_Mutation_p.E44K|ATP1A3_uc010xwg.1_Missense_Mutation_p.E3K|ATP1A3_uc010xwh.1_Missense_Mutation_p.E46K|ATP1A3_uc002osh.2_Missense_Mutation_p.E33K	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	33	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						ATCTTGTGCTCTGTCTGAGGA	0.483													58	96					0	0	0.014410	0	0
POU2F2	5452	broad.mit.edu	37	19	42599549	42599549	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:42599549C>T	uc002osp.2	-	11	1087	c.1020G>A	c.(1018-1020)GTG>GTA	p.V340V	POU2F2_uc002osn.2_Silent_p.V324V|POU2F2_uc002oso.2_Silent_p.V113V|POU2F2_uc002osq.2_Silent_p.V324V|POU2F2_uc002osr.1_Silent_p.V340V	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	340	Homeobox.			VIR->FNP: Suppresses DNA-binding ability.	humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				AGACGCGGATCACTTCCTTCT	0.637													8	18					0	0	0.003080	0	0
POU2F2	5452	broad.mit.edu	37	19	42603737	42603737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:42603737G>A	uc002osp.2	-	7	510	c.443C>T	c.(442-444)CCT>CTT	p.P148L	POU2F2_uc002osn.2_Missense_Mutation_p.P148L|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Missense_Mutation_p.P148L|POU2F2_uc002osr.1_Missense_Mutation_p.P148L	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	148					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GGTTTGCTGAGGTAGCTGGAA	0.597													17	17					0	0	0.006122	0	0
PSG3	5671	broad.mit.edu	37	19	43237007	43237007	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:43237007C>T	uc002oue.2	-	3	770	c.638G>A	c.(637-639)GGA>GAA	p.G213E	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.G235E	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	213	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTCATAGGGTCCTGCAGTGTA	0.502													90	140					0	0	0.014410	0	0
PSG2	5670	broad.mit.edu	37	19	43570732	43570732	+	Missense_Mutation	SNP	G	A	A	rs1142259		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:43570732G>A	uc002ovr.2	-	5	1078	c.985C>T	c.(985-987)CTT>TTT	p.L329F	PSG10_uc002ouv.1_RNA|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.L329F|PSG2_uc010eiq.1_Intron|PSG2_uc002ovs.3_Missense_Mutation_p.L329F|PSG2_uc002ovt.3_Missense_Mutation_p.L329F	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	329					cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				AGGAGAGGAAGAAGTCCTATT	0.413													20	44					0	0	0.008871	0	0
PSG5	5673	broad.mit.edu	37	19	43680253	43680253	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:43680253C>T	uc002ovu.2	-	3	609	c.478G>A	c.(478-480)GAG>AAG	p.E160K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.E160K|PSG5_uc002ovv.2_Missense_Mutation_p.E253K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	160	Ig-like C2-type 1.				female pregnancy	extracellular region		p.E160E(1)		skin(3)	3		Prostate(69;0.00899)				TCCTTATTCTCCCTGGGTTTT	0.493													88	138					0	0	0.014410	0	0
PSG9	5678	broad.mit.edu	37	19	43762592	43762592	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:43762592G>A	uc002owd.3	-	5	1104	c.1005C>T	c.(1003-1005)CCC>CCT	p.P335P	PSG9_uc002owe.3_Silent_p.P242P|PSG9_uc010xwm.1_Silent_p.P242P|PSG9_uc002owf.3_Silent_p.P149P|PSG9_uc002owg.2_Silent_p.P242P|PSG9_uc002owh.2_Silent_p.P149P	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	335	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGTAAATTCTGGGGAGGTCTG	0.478													66	82					0	0	0.014410	0	0
TEX101	83639	broad.mit.edu	37	19	43922105	43922105	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:43922105C>T	uc010xwo.1	+	5	662	c.467C>T	c.(466-468)CCC>CTC	p.P156L	TEX101_uc002owk.2_Missense_Mutation_p.P174L	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	156						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				CCTTCTCTTCCCTGTCCCAAT	0.463													38	61					0	0	0.004878	0	0
ZNF283	284349	broad.mit.edu	37	19	44351245	44351245	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:44351245C>T	uc002oxr.3	+	7	760	c.492C>T	c.(490-492)TTC>TTT	p.F164F	ZNF283_uc002oxp.3_Silent_p.F25F	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	164					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AAAGCATATTCGAGGGACTAA	0.363													5	11					0	0	0.001168	0	0
ZNF225	7768	broad.mit.edu	37	19	44635521	44635521	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:44635521A>G	uc002oyj.1	+	5	997	c.754A>G	c.(754-756)AAA>GAA	p.K252E	ZNF225_uc010eje.1_Missense_Mutation_p.K169E|ZNF225_uc010ejf.1_Missense_Mutation_p.K252E	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	252	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				TGTTCATCGTAAATTACACAC	0.418													26	36					0	0	0.004656	0	0
ZNF234	10780	broad.mit.edu	37	19	44660636	44660636	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:44660636C>T	uc002oym.2	+	6	774	c.467C>T	c.(466-468)TCC>TTC	p.S156F	ZNF234_uc002oyl.3_Missense_Mutation_p.S156F	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	156	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TACAAAAAATCCTTCACTGAT	0.413													21	27					0	0	0.010504	0	0
CCDC61	729440	broad.mit.edu	37	19	46498687	46498687	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:46498687G>A	uc002pdw.2	+	2	85	c.85G>A	c.(85-87)GAG>AAG	p.E29K		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		AATCAGAAGCGAGAACGCCGG	0.607													9	15					0	0	0.002450	0	0
IGFL2	147920	broad.mit.edu	37	19	46664004	46664004	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:46664004C>T	uc010xxv.1	+	3	243	c.207C>T	c.(205-207)CCC>CCT	p.P69P	IGFL2_uc002peb.2_Silent_p.P80P	NM_001135113	NP_001128585	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2 isoform b	69						extracellular region	protein binding				0		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		GTGGTCCCCCCTGCACCTTCT	0.547													75	115					0	0	0.014410	0	0
PTGIR	5739	broad.mit.edu	37	19	47124798	47124798	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:47124798G>A	uc002pex.2	-	3	1013	c.900C>T	c.(898-900)TTC>TTT	p.F300F		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	300	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	TGAGTCGCTGGAAGACAGCCT	0.627													31	45					0	0	0.010818	0	0
NAPA	8775	broad.mit.edu	37	19	47996742	47996742	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:47996742G>A	uc002pha.1	-	5	651	c.351C>T	c.(349-351)TTC>TTT	p.F117F	uc002pgz.1_RNA|NAPA_uc002phb.1_Silent_p.F78F|NAPA_uc002phc.1_Silent_p.F4F|NAPA_uc002phd.1_Silent_p.F117F|NAPA_uc010elf.1_5'UTR	NM_003827	NP_003818	P54920	SNAA_HUMAN	N-ethylmaleimide-sensitive factor attachment	117					cellular membrane fusion|intra-Golgi vesicle-mediated transport|post-Golgi vesicle-mediated transport	cytosol					0		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000466)|all cancers(93;0.000739)|Epithelial(262;0.0168)|GBM - Glioblastoma multiforme(486;0.049)		CCGCAATCGTGAATCGGCCCT	0.602													43	71					0	0	0.010771	0	0
TMEM143	55260	broad.mit.edu	37	19	48863344	48863344	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:48863344G>A	uc002pix.1	-	3	363	c.354C>T	c.(352-354)ATC>ATT	p.I118I	TMEM143_uc002piw.1_RNA|TMEM143_uc002piy.1_Intron|TMEM143_uc010xzn.1_Silent_p.I118I|TMEM143_uc010elw.1_Intron|TMEM143_uc010xzo.1_Intron|TMEM143_uc010xzp.1_Silent_p.I118I|TMEM143_uc010xzq.1_Intron	NM_018273	NP_060743	Q96AN5	TM143_HUMAN	transmembrane protein 143	118						integral to membrane|mitochondrion					0		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000149)|all cancers(93;0.000198)|Epithelial(262;0.0151)|GBM - Glioblastoma multiforme(486;0.0157)		GCCGGGCCAGGATTTGGTGGT	0.488													19	34					0	0	0.008871	0	0
NTN5	126147	broad.mit.edu	37	19	49166770	49166770	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:49166770G>A	uc002pkb.2	-	6	1151	c.1055C>T	c.(1054-1056)TCG>TTG	p.S352L	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_3'UTR	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	352	NTR.					extracellular region				large_intestine(1)|pancreas(1)	2						CCTGGTGTCCGACATATTGCA	0.592													31	84					0	0	0.009535	0	0
FGF21	26291	broad.mit.edu	37	19	49259613	49259613	+	Silent	SNP	C	T	T	rs145274354		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:49259613C>T	uc002pkn.1	+	2	692	c.120C>T	c.(118-120)TTC>TTT	p.F40F	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkl.1_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.F40F	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	40					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TCCTGCAATTCGGGGGCCAAG	0.632													9	19					0	0	0.008291	0	0
MYBPC2	4606	broad.mit.edu	37	19	50944251	50944251	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:50944251C>T	uc002psf.2	+	8	738	c.687C>T	c.(685-687)ATC>ATT	p.I229I		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	229					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		ACGAGAAAATCGCCTTCCAGT	0.542													6	10					0	0	0.003080	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51630441	51630442	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:51630441_51630442CC>TT	uc002pvu.2	+	4	970_971	c.903_904CC>TT	c.(901-906)AACCCG>AATTCG	p.P302S	SIGLEC9_uc010yct.1_Missense_Mutation_p.P302S	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	302	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		AGCCCTCAAACCCGGGGGTGCT	0.619													30	42					0	0	0.004672	0	0
ETFB	2109	broad.mit.edu	37	19	51850297	51850297	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:51850297G>A	uc002pwh.2	-	5	546	c.454C>T	c.(454-456)CAG>TAG	p.Q152*	ETFB_uc002pwg.2_Nonsense_Mutation_p.Q243*	NM_001985	NP_001976	P38117	ETFB_HUMAN	electron-transfer-flavoprotein, beta polypeptide	152					respiratory electron transport chain|transport	mitochondrial matrix	electron carrier activity				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000226)|OV - Ovarian serous cystadenocarcinoma(262;0.00661)		AGCGTCACCTGGGAGGCGAAT	0.607													10	13					0	0	0.010729	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002937	52002937	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:52002937C>T	uc002pwx.1	-	3	898	c.842G>A	c.(841-843)GGG>GAG	p.G281E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G163E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G8E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	281	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CTCCAGGGTCCCCGGGATGGA	0.637													23	34					0	0	0.003954	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52115671	52115671	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:52115671G>A	uc002pxe.2	-	9	1608	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	490	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CTTCTTCCTGGAACCCTGAGT	0.428													32	49					0	0	0.010818	0	0
ZNF614	80110	broad.mit.edu	37	19	52519103	52519103	+	Missense_Mutation	SNP	G	A	A	rs147676609		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:52519103G>A	uc002pyj.2	-	5	2150	c.1748C>T	c.(1747-1749)CCT>CTT	p.P583L	ZNF614_uc002pyi.3_Intron|ZNF614_uc010epj.2_Missense_Mutation_p.P286L	NM_025040	NP_079316	Q8N883	ZN614_HUMAN	zinc finger protein 614	583					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	5		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00513)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TCACTTATAAGGAAGGAGCTG	0.393													39	61					0	0	0.009718	0	0
ZNF610	162963	broad.mit.edu	37	19	52869116	52869116	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:52869116C>T	uc002pyx.3	+	6	891	c.485C>T	c.(484-486)TCA>TTA	p.S162L	ZNF610_uc002pyy.3_Missense_Mutation_p.S162L|ZNF610_uc002pyz.3_Missense_Mutation_p.S119L|ZNF610_uc002pza.2_Missense_Mutation_p.S162L	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	162					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		TCCTCAGTTTCACCACTTCAA	0.343													19	47					0	0	0.008871	0	0
ZNF528	84436	broad.mit.edu	37	19	52919895	52919895	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:52919895G>A	uc002pzh.2	+	7	2216	c.1790G>A	c.(1789-1791)AGA>AAA	p.R597K	ZNF528_uc002pzi.2_Missense_Mutation_p.R364K	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	597	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		AATCACCATAGAATTCACATT	0.423													13	27					0	0	0.016723	0	0
ZNF578	147660	broad.mit.edu	37	19	53014718	53014718	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:53014718C>T	uc002pzp.3	+	6	1328	c.1084C>T	c.(1084-1086)CGT>TGT	p.R362C		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	137	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		TAGATGCCATCGTAGACTTCA	0.393													17	36					0	0	0.006122	0	0
ZNF320	162967	broad.mit.edu	37	19	53383908	53383908	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:53383908G>A	uc002qag.2	-	4	1662	c.1471C>T	c.(1471-1473)CCT>TCT	p.P491S	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.P437S|ZNF320_uc002qai.2_Missense_Mutation_p.P491S	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	491	C2H2-type 12; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TCTCCAAAAGGAATTTTCTGA	0.393													12	24					0	0	0.013537	0	0
VN1R2	317701	broad.mit.edu	37	19	53761937	53761937	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:53761937G>A	uc002qbi.2	+	1	393	c.309G>A	c.(307-309)GGG>GGA	p.G103G		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	103	Helical; Name=2; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GAATCCTGGGGAATTTTTCAC	0.259													4	11					0	0	0.009096	0	0
NLRP12	91662	broad.mit.edu	37	19	54313799	54313799	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:54313799C>T	uc002qch.3	-	3	1334	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E372K|NLRP12_uc002qcj.3_Missense_Mutation_p.E372K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E372K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	372	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TAGAAGTATTCCTTCCTTTCT	0.557													55	109					0	0	0.014410	0	0
PRKCG	5582	broad.mit.edu	37	19	54403501	54403501	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:54403501C>T	uc002qcq.1	+	12	1578	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	PRKCG_uc010yeg.1_Silent_p.F432F|PRKCG_uc010yeh.1_Silent_p.F319F	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	432	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GCCTGTATTTCGTGATGGAGT	0.537													17	26					0	0	0.007413	0	0
MBOAT7	79143	broad.mit.edu	37	19	54684597	54684597	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:54684597C>T	uc002qdq.2	-	7	1013	c.747G>A	c.(745-747)TGG>TGA	p.W249*	MBOAT7_uc010erg.2_Intron|MBOAT7_uc010yem.1_Nonsense_Mutation_p.W231*|MBOAT7_uc002qdr.2_Nonsense_Mutation_p.W249*|MBOAT7_uc002qds.2_Nonsense_Mutation_p.W176*|MBOAT7_uc010yen.1_Nonsense_Mutation_p.W176*|MBOAT7_uc002qdt.3_Nonsense_Mutation_p.W249*	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	249	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CGGCGGCAATCCAGGCCACGT	0.716											OREG0003644	type=REGULATORY REGION|Gene=AK123290|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	4					0	0	0.014758	0	0
LILRB5	10990	broad.mit.edu	37	19	54754776	54754776	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:54754776G>A	uc002qex.2	-	13	1758	c.1647C>T	c.(1645-1647)CCC>CCT	p.P549P	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P620L|LILRB5_uc002qey.2_Silent_p.P550P|LILRB5_uc002qez.2_Silent_p.P450P|LILRB5_uc002qfa.1_3'UTR	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	549	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity	p.P549L(1)		ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCACATCCTGGGGGGCTTCAG	0.632													26	25					0	0	0.007291	0	0
LAIR1	3903	broad.mit.edu	37	19	54867598	54867598	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:54867598C>T	uc002qfk.1	-	9	992	c.682G>A	c.(682-684)GGA>AGA	p.G228R	LAIR1_uc002qfl.1_Missense_Mutation_p.G211R|LAIR1_uc002qfm.1_Missense_Mutation_p.G227R|LAIR1_uc002qfn.1_Missense_Mutation_p.G210R|LAIR1_uc010yex.1_Missense_Mutation_p.G221R|LAIR1_uc002qfo.2_Missense_Mutation_p.G210R	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	228	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TCAGGAAGTCCATTGACTGTG	0.418													20	53					0	0	0.014323	0	0
LILRB4	11006	broad.mit.edu	37	19	55179348	55179348	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:55179348G>A	uc002qgp.2	+	12	1587	c.1225G>A	c.(1225-1227)GAT>AAT	p.D409N	LILRB4_uc002qgq.2_Missense_Mutation_p.D408N|LILRB4_uc002qgr.2_Missense_Mutation_p.D451N|LILRB4_uc010ert.2_Missense_Mutation_p.D450N|LILRB4_uc010eru.2_Missense_Mutation_p.D439N	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	409	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		AGCCCCCCAGGATGTGACCTA	0.637													23	40					0	0	0.006320	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55247300	55247300	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:55247300G>A	uc002qgu.1	+	7	1086	c.1068G>A	c.(1066-1068)ATG>ATA	p.M356I	KIR2DL3_uc002qgv.2_Intron|KIR2DL3_uc002qgx.2_5'Flank|KIR2DL3_uc002qgy.2_5'Flank|KIR2DL3_uc010erw.1_5'Flank	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	356	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		CTGTTGTAATGGACCAAGAGC	0.522													29	9					0	0	0.017118	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55290088	55290088	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:55290088C>T	uc002qhb.1	+	5	727	c.689C>T	c.(688-690)TCA>TTA	p.S230L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.S230L	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	230	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGTTGGCCTTCACCCACTGAA	0.502													52	8					0	0	0.014410	0	0
PEG3	5178	broad.mit.edu	37	19	57327204	57327204	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:57327204T>A	uc002qnu.2	-	7	2957	c.2606A>T	c.(2605-2607)AAT>ATT	p.N869I	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.N840I|PEG3_uc002qnv.2_Missense_Mutation_p.N869I|PEG3_uc002qnw.2_Missense_Mutation_p.N745I|PEG3_uc002qnx.2_Missense_Mutation_p.N743I|PEG3_uc010etr.2_Missense_Mutation_p.N869I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	869					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCGCTTATCATTAAGGTCTGA	0.438													27	32					0	0	0.008361	0	0
USP29	57663	broad.mit.edu	37	19	57640915	57640915	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:57640915G>A	uc002qny.2	+	4	1228	c.872G>A	c.(871-873)GGA>GAA	p.G291E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	291					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCCAATTTGGGAAACACCTGT	0.473													19	22					0	0	0.006122	0	0
ZNF549	256051	broad.mit.edu	37	19	58046596	58046596	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:58046596C>T	uc002qpb.1	+	3	406	c.157C>T	c.(157-159)CAT>TAT	p.H53Y	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Missense_Mutation_p.H53Y|ZNF549_uc002qpa.1_Missense_Mutation_p.H40Y	NM_153263	NP_694995	Q6P9A3	ZN549_HUMAN	zinc finger protein 549	53	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTGCCTGTATCATGATGTGAT	0.498													38	63					0	0	0.004878	0	0
ZIK1	284307	broad.mit.edu	37	19	58101380	58101380	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:58101380T>C	uc002qpg.2	+	4	298	c.201T>C	c.(199-201)GGT>GGC	p.G67G	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Silent_p.G12G|ZIK1_uc002qpi.2_Silent_p.G54G|ZIK1_uc002qpj.2_5'UTR	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	67	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGCTTTCAGGTTGTGGCCATG	0.443													8	12					0	0	0.003080	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58187518	58187518	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:58187518C>T	uc002qpu.2	+	3	702	c.5C>T	c.(4-6)GCT>GTT	p.A2V		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	2					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTAAGAATGGCTTTAGATCTA	0.383													4	28					0	0	0.009096	0	0
ZNF418	147686	broad.mit.edu	37	19	58437712	58437712	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:58437712G>A	uc002qqs.1	-	4	2129	c.1837C>T	c.(1837-1839)CAT>TAT	p.H613Y	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.H528Y	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	613	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		CCTCGAGTATGAAGTCTCTGA	0.453													23	9					0	0	0.016522	0	0
ZNF446	55663	broad.mit.edu	37	19	58991763	58991763	+	Silent	SNP	C	T	T	rs138401322		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr19:58991763C>T	uc002qsz.2	+	7	1140	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	ZNF446_uc002qta.2_Missense_Mutation_p.S313L|ZNF446_uc010eur.2_3'UTR|SLC27A5_uc002qtb.2_RNA	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	341	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		GCCGCGGCTTCGACTGGAAGT	0.662													8	11					0	0	0.003080	0	0
TPO	7173	broad.mit.edu	37	2	1459899	1459899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:1459899G>A	uc002qww.2	+	7	755	c.664G>A	c.(664-666)GAT>AAT	p.D222N	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.D222N|TPO_uc002qwr.2_Missense_Mutation_p.D222N|TPO_uc002qwx.2_Missense_Mutation_p.D222N|TPO_uc010yio.1_Missense_Mutation_p.D222N|TPO_uc010yip.1_Missense_Mutation_p.D222N	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	222	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGTTGTCACAGATGATGACCG	0.532													15	15					0	0	0.004007	0	0
CPSF3	51692	broad.mit.edu	37	2	9607863	9607863	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:9607863T>C	uc002qzo.1	+	16	1849	c.1814T>C	c.(1813-1815)TTA>TCA	p.L605S	CPSF3_uc002qzp.1_Missense_Mutation_p.L568S|CPSF3_uc002qzq.1_Missense_Mutation_p.L182S	NM_016207	NP_057291	Q9UKF6	CPSF3_HUMAN	cleavage and polyadenylation specific factor 3,	605					histone mRNA 3'-end processing|mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex|ribonucleoprotein complex	5'-3' exonuclease activity|endoribonuclease activity|metal ion binding|protein binding|RNA binding			breast(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;2.39e-25)|all_epithelial(98;8.75e-19)|Lung NSC(108;2.38e-06)|Ovarian(717;0.0308)		all cancers(51;2.2e-40)|Epithelial(75;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(76;4.35e-21)|STAD - Stomach adenocarcinoma(1183;0.00644)		TCTAAAAAATTAGAAATGCAC	0.388													17	28					0	0	0.007413	0	0
C2orf48	348738	broad.mit.edu	37	2	10350492	10350492	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:10350492C>T	uc002rai.1	+	4	538	c.249C>T	c.(247-249)CTC>CTT	p.L83L		NM_182626	NP_872432	Q96LS8	CB048_HUMAN	hypothetical protein LOC348738	83											0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)		GCCCAGCCCTCATTGTGAAGG	0.512													13	24					0	0	0.016723	0	0
GREB1	9687	broad.mit.edu	37	2	11741077	11741077	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:11741077A>G	uc002rbk.1	+	16	2785	c.2485A>G	c.(2485-2487)ATC>GTC	p.I829V	GREB1_uc002rbo.1_Missense_Mutation_p.I463V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	829				I -> S (in Ref. 1; AAG39036).		integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GCACACCCTCATCAGCCCCTA	0.572													21	38					0	0	0.003954	0	0
APOB	338	broad.mit.edu	37	2	21229114	21229114	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:21229114C>A	uc002red.2	-	26	10754	c.10626G>T	c.(10624-10626)TGG>TGT	p.W3542C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3542					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTCAAGGTTCCAGATATCAT	0.448													160	322					4.76656e-67	5.50554e-67	0.014410	1	0
APOB	338	broad.mit.edu	37	2	21230676	21230676	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:21230676C>T	uc002red.2	-	26	9192	c.9064G>A	c.(9064-9066)GAT>AAT	p.D3022N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3022					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAATGAGCATCATGCCTCCCA	0.438													149	235					0	0	0.014410	0	0
ITSN2	50618	broad.mit.edu	37	2	24533432	24533432	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:24533432G>A	uc002rfe.2	-	6	740	c.482C>T	c.(481-483)TCT>TTT	p.S161F	ITSN2_uc002rff.2_Missense_Mutation_p.S161F|ITSN2_uc002rfg.2_Missense_Mutation_p.S161F|ITSN2_uc010eyd.2_Missense_Mutation_p.S161F	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	161					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTGCTAACAGAAGGCACTAG	0.463													13	24					0	0	0.002450	0	0
C2orf39	92749	broad.mit.edu	37	2	26677515	26677515	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:26677515G>A	uc002rhg.2	+	15	1994	c.1920G>A	c.(1918-1920)AGG>AGA	p.R640R		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	640											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGCCTTCAGGGACTCGCGGG	0.592													21	37					0	0	0.018920	0	0
DPYSL5	56896	broad.mit.edu	37	2	27167534	27167534	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:27167534T>C	uc002rhu.3	+	12	1609	c.1451T>C	c.(1450-1452)GTT>GCT	p.V484A	DPYSL5_uc002rhv.3_Missense_Mutation_p.V484A	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	484					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTTTAAAGGTTAGAGGAGTG	0.567													12	43					0	0	0.016723	0	0
AGBL5	60509	broad.mit.edu	37	2	27276421	27276421	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:27276421C>T	uc002rie.2	+	3	584	c.367C>T	c.(367-369)CGA>TGA	p.R123*	AGBL5_uc002ric.2_Nonsense_Mutation_p.R123*|AGBL5_uc002rid.2_Nonsense_Mutation_p.R123*|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	123					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGAACGCATTCGAGACCGGCC	0.498													23	28					0	0	0.014323	0	0
GALNT14	79623	broad.mit.edu	37	2	31154962	31154962	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:31154962G>A	uc002rnr.2	-	10	1649	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S	GALNT14_uc002rnq.2_Missense_Mutation_p.P324S|GALNT14_uc002rns.2_Missense_Mutation_p.P349S|GALNT14_uc010ymr.1_Missense_Mutation_p.P309S|GALNT14_uc010ezo.1_Missense_Mutation_p.P311S|GALNT14_uc010ezp.1_3'UTR	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	344	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TTTCCATCAGGGAAAACGTAG	0.607													15	13					0	0	0.003163	0	0
TTC27	55622	broad.mit.edu	37	2	33002965	33002965	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:33002965C>T	uc002rom.2	+	14	1928	c.1697C>T	c.(1696-1698)TCT>TTT	p.S566F	TTC27_uc010ymx.1_Missense_Mutation_p.S516F|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	566	HAT 1.|TPR 4.						protein binding			central_nervous_system(1)	1						GTGTGGTTTTCTCTCGGTTGT	0.403													12	18					0	0	0.016723	0	0
LTBP1	4052	broad.mit.edu	37	2	33468816	33468816	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:33468816G>A	uc002ros.2	+	10	1964	c.1964G>A	c.(1963-1965)GGA>GAA	p.G655E	LTBP1_uc002rot.2_Missense_Mutation_p.G329E|LTBP1_uc002rou.2_Missense_Mutation_p.G329E|LTBP1_uc002rov.2_Missense_Mutation_p.G329E|LTBP1_uc010ymz.1_Missense_Mutation_p.G329E|LTBP1_uc010yna.1_Missense_Mutation_p.G329E	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	655	EGF-like 3; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TGCAAAATAGGATTTGGGCCG	0.383													23	27					0	0	0.005443	0	0
VIT	5212	broad.mit.edu	37	2	37036010	37036010	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:37036010C>T	uc002rpl.2	+	15	2006	c.1785C>T	c.(1783-1785)TTC>TTT	p.F595F	VIT_uc002rpm.2_Silent_p.F573F|VIT_uc010ezv.2_Silent_p.F551F|VIT_uc010ezw.2_Silent_p.F552F	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	580	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CCATCAACTTCGCCCTGGAGC	0.577													15	30					0	0	0.004990	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37374038	37374039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:37374038_37374039GG>AA	uc010ynh.1	-	4	754_755	c.197_198CC>TT	c.(196-198)GCC>GTT	p.A66V	EIF2AK2_uc010fab.1_Missense_Mutation_p.A66V|EIF2AK2_uc010yng.1_Missense_Mutation_p.A66V|EIF2AK2_uc010fac.2_Missense_Mutation_p.A66V|EIF2AK2_uc010fad.2_Missense_Mutation_p.A66V	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	66	DRBM 1.				evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				ATTTGGCTGCGGCATTTTTTGC	0.332													11	30					0	0	0.004672	0	0
CYP1B1	1545	broad.mit.edu	37	2	38298407	38298407	+	Missense_Mutation	SNP	C	T	T	rs72549379		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:38298407C>T	uc002rqo.2	-	4	1493	c.1090G>A	c.(1090-1092)GTG>ATG	p.V364M		NM_000104	NP_000095	Q16678	CP1B1_HUMAN	cytochrome P450, family 1, subfamily B,	364			V -> M (in GLC3A).		visual perception|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			ovary(1)|central_nervous_system(1)	2		all_hematologic(82;0.21)			Estrone(DB00655)	TCCCTCCCCACGACCTGATCC	0.507													9	17					0	0	0.006214	0	0
DHX57	90957	broad.mit.edu	37	2	39050298	39050298	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:39050298A>G	uc002rrf.2	-	17	3227	c.3128T>C	c.(3127-3129)TTA>TCA	p.L1043S	DHX57_uc002rrd.3_Missense_Mutation_p.L427S|DHX57_uc002rre.2_Missense_Mutation_p.L476S	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1043							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TAATGCTCCTAAGTCTCGTAA	0.453													20	40					0	0	0.008871	0	0
SIX2	10736	broad.mit.edu	37	2	45233327	45233327	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:45233327G>A	uc002ruo.2	-	2	1151	c.858C>T	c.(856-858)CTC>CTT	p.L286L	SIX2_uc002rup.2_Silent_p.L288L	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	286						nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCAGGTCCACGAGGTTGGCTG	0.647													26	47					0	0	0.008361	0	0
PRKCE	5581	broad.mit.edu	37	2	46203596	46203596	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:46203596C>T	uc002rut.2	+	3	638	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	147					activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			AGCGTGTGTTCAGGGAACGCA	0.587													28	38					0	0	0.007291	0	0
KLRAQ1	129285	broad.mit.edu	37	2	48681813	48681813	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:48681813T>C	uc002rwm.2	+	3	391	c.206T>C	c.(205-207)CTT>CCT	p.L69P	KLRAQ1_uc002rwi.1_Missense_Mutation_p.L69P|KLRAQ1_uc002rwj.2_Missense_Mutation_p.L69P|KLRAQ1_uc002rwl.2_Missense_Mutation_p.L23P|KLRAQ1_uc002rwk.2_Missense_Mutation_p.L69P|KLRAQ1_uc010yok.1_Missense_Mutation_p.L69P	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	69	Potential.									ovary(1)	1						AATCTGCAGCTTGCCAAGAGG	0.398													18	27					0	0	0.008871	0	0
NRXN1	9378	broad.mit.edu	37	2	51253597	51253597	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:51253597G>A	uc010fbq.2	-	3	2260	c.783C>T	c.(781-783)TTC>TTT	p.F261F	NRXN1_uc002rxe.3_Intron|NRXN1_uc002rxd.1_Intron	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ACTGAAGACCGAATTTTATTT	0.378													5	5					0	0	0.001168	0	0
CCDC88A	55704	broad.mit.edu	37	2	55561343	55561343	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:55561343C>T	uc002ryv.2	-	15	3456	c.2614G>A	c.(2614-2616)GAA>AAA	p.E872K	CCDC88A_uc010yoz.1_Missense_Mutation_p.E872K|CCDC88A_uc010ypa.1_Missense_Mutation_p.E872K|CCDC88A_uc010ypb.1_Missense_Mutation_p.E774K|CCDC88A_uc002ryu.2_Missense_Mutation_p.E155K|CCDC88A_uc002ryw.2_Missense_Mutation_p.E155K	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	872	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						ATACCAATTTCTTTGGATAGG	0.308													14	26					0	0	0.002450	0	0
BMP10	27302	broad.mit.edu	37	2	69093535	69093535	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:69093535A>C	uc002sez.1	-	2	662	c.503T>G	c.(502-504)TTT>TGT	p.F168C		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	168					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						CAGCACTTCAAAAATGGTAAT	0.453													17	27					0	0	0.006122	0	0
GKN2	200504	broad.mit.edu	37	2	69173470	69173470	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:69173470G>A	uc002sfa.2	-	5	547	c.438C>T	c.(436-438)ATC>ATT	p.I146I	GKN2_uc002sfb.3_Silent_p.I146I	NM_182536	NP_872342	Q86XP6	GKN2_HUMAN	trefoil factor interactions(z) 1 precursor	146	BRICHOS.					extracellular region					0						TATACAAAGGGATATGTTTGC	0.343													42	60					0	0	0.014410	0	0
C2orf42	54980	broad.mit.edu	37	2	70408972	70408972	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:70408972G>A	uc002sgh.2	-	3	474	c.146C>T	c.(145-147)ACC>ATC	p.T49I		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	49											0						GCGGAATATGGTTCCACATGT	0.512													19	36					0	0	0.007413	0	0
DYSF	8291	broad.mit.edu	37	2	71753380	71753380	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:71753380G>A	uc002sie.2	+	12	1460	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	DYSF_uc010feg.2_Missense_Mutation_p.E393K|DYSF_uc010feh.2_Missense_Mutation_p.E362K|DYSF_uc002sig.3_Missense_Mutation_p.E362K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E362K|DYSF_uc010fef.2_Missense_Mutation_p.E393K|DYSF_uc010fei.2_Missense_Mutation_p.E393K|DYSF_uc010fek.2_Missense_Mutation_p.E394K|DYSF_uc010fej.2_Missense_Mutation_p.E363K|DYSF_uc010fel.2_Missense_Mutation_p.E363K|DYSF_uc010feo.2_Missense_Mutation_p.E394K|DYSF_uc010fem.2_Missense_Mutation_p.E363K|DYSF_uc010fen.2_Missense_Mutation_p.E394K|DYSF_uc002sif.2_Missense_Mutation_p.E363K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	362	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGAAGACAAGGAGGACATTGA	0.537													67	99					0	0	0.014410	0	0
DYSF	8291	broad.mit.edu	37	2	71840485	71840485	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:71840485C>T	uc002sie.2	+	40	4731	c.4355C>T	c.(4354-4356)CCT>CTT	p.P1452L	DYSF_uc010feg.2_Missense_Mutation_p.P1483L|DYSF_uc010feh.2_Missense_Mutation_p.P1438L|DYSF_uc002sig.3_Missense_Mutation_p.P1438L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1452L|DYSF_uc010fef.2_Missense_Mutation_p.P1469L|DYSF_uc010fei.2_Missense_Mutation_p.P1469L|DYSF_uc010fek.2_Missense_Mutation_p.P1470L|DYSF_uc010fej.2_Missense_Mutation_p.P1439L|DYSF_uc010fel.2_Missense_Mutation_p.P1439L|DYSF_uc010feo.2_Missense_Mutation_p.P1484L|DYSF_uc010fem.2_Missense_Mutation_p.P1453L|DYSF_uc010fen.2_Missense_Mutation_p.P1470L|DYSF_uc002sif.2_Missense_Mutation_p.P1453L|DYSF_uc010yqy.1_Missense_Mutation_p.P333L|DYSF_uc010yqz.1_Missense_Mutation_p.P192L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1452	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CTACTCAGTCCTGGGGAAGAC	0.622													10	11					0	0	0.013537	0	0
ALMS1	7840	broad.mit.edu	37	2	73651716	73651716	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:73651716C>T	uc002sje.1	+	6	1037	c.926C>T	c.(925-927)TCT>TTT	p.S309F	ALMS1_uc002sjf.1_Missense_Mutation_p.S266F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	308					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GCTGTTGGGTCTCAGTGCCCT	0.433													10	25					0	0	0.008291	0	0
TET3	200424	broad.mit.edu	37	2	74274556	74274557	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:74274556_74274557CC>TT	uc002skb.3	+	1	1107_1108	c.1107_1108CC>TT	c.(1105-1110)TCCCCT>TCTTCT	p.P370S	TET3_uc010fez.1_Missense_Mutation_p.P370S	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	370							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CGGCCCCATCCCCTGTACTTCA	0.653													9	9					0	0	0.004672	0	0
FAM176A	84141	broad.mit.edu	37	2	75720659	75720659	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:75720659C>T	uc002sni.2	-	4	640	c.162G>A	c.(160-162)GTG>GTA	p.V54V	FAM176A_uc002snj.1_Silent_p.V41V|FAM176A_uc002snk.1_Silent_p.V54V	NM_001135032	NP_001128504	Q9H8M9	F176A_HUMAN	family with sequence similarity 176, member A	54	Necessary for the localization and biological activity.|Helical; (Potential).				apoptosis|autophagy	endoplasmic reticulum membrane|integral to membrane|lysosomal membrane|plasma membrane					0						AGATCCTTATCACCAGAGCAG	0.577													10	23					0	0	0.008291	0	0
CTNNA2	1496	broad.mit.edu	37	2	80808870	80808870	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:80808870G>A	uc010ysh.1	+	13	1938	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	CTNNA2_uc010yse.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E645K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E277K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	645					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTTTGAGCAGGAAGATTATGA	0.458													20	29					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	2	89309641	89309641	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:89309641C>T	uc010ytr.1	-	74		c.6706G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TAGGGGCTTTCCCTGGTTTTT	0.512													45	77					0	0	0.014410	0	0
ZNF514	84874	broad.mit.edu	37	2	95815961	95815961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:95815961G>A	uc002sue.1	-	5	643	c.269C>T	c.(268-270)TCC>TTC	p.S90F	ZNF514_uc002sud.1_Missense_Mutation_p.S163F	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	90					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCTTCTTTGGAAATTCCCCA	0.373													42	82					0	0	0.014410	0	0
PROM2	150696	broad.mit.edu	37	2	95954033	95954033	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:95954033G>A	uc002suh.1	+	21	2452	c.2319G>A	c.(2317-2319)ATG>ATA	p.M773I	PROM2_uc002sui.2_Missense_Mutation_p.M773I|PROM2_uc002suj.2_Missense_Mutation_p.M427I|PROM2_uc002suk.2_Missense_Mutation_p.M773I|PROM2_uc002sul.2_Missense_Mutation_p.M299I|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	773	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TGTGTGACATGATGGCTGACC	0.642													30	50					0	0	0.010818	0	0
CNGA3	1261	broad.mit.edu	37	2	99008427	99008427	+	Missense_Mutation	SNP	C	T	T	rs138958917		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:99008427C>T	uc002syt.2	+	7	1084	c.667C>T	c.(667-669)CGG>TGG	p.R223W	CNGA3_uc002syu.2_Missense_Mutation_p.R205W|CNGA3_uc010fij.2_Missense_Mutation_p.R227W	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	223			R -> W (in ACHM2).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						TGTACGAGCTCGGACAGGTGA	0.602													20	16					0	0	0.014323	0	0
TSGA10	80705	broad.mit.edu	37	2	99695147	99695147	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:99695147G>A	uc002szg.3	-	10	1485	c.857C>T	c.(856-858)TCC>TTC	p.S286F	TSGA10_uc002szh.3_Missense_Mutation_p.S286F|TSGA10_uc002szi.3_Missense_Mutation_p.S286F|TSGA10_uc010fin.1_Missense_Mutation_p.S286F|TSGA10_uc010yvn.1_Missense_Mutation_p.S286F	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	286					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						CTCTCCAAGGGATGCAATATT	0.353													10	22					0	0	0.016723	0	0
TBC1D8	11138	broad.mit.edu	37	2	101670582	101670582	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:101670582G>A	uc010fiv.2	-	4	705	c.574C>T	c.(574-576)CTG>TTG	p.L192L	TBC1D8_uc010yvw.1_Silent_p.L207L|TBC1D8_uc002tau.3_5'UTR	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	192	GRAM 1.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						TCCTTGCCCAGGAAGAAGGAG	0.592													10	10					0	0	0.013537	0	0
RGPD3	653489	broad.mit.edu	37	2	107073457	107073457	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:107073457G>A	uc010ywi.1	-	4	432	c.375C>T	c.(373-375)TTC>TTT	p.F125F		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	125					intracellular transport		binding			ovary(1)	1						GACTTCCTGGGAAAAGTTTTG	0.328													57	69					0	0	0.014410	0	0
PAX8	7849	broad.mit.edu	37	2	114002156	114002156	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:114002156G>A	uc010yxt.1	-	4	403	c.237C>T	c.(235-237)TCC>TCT	p.S79S	PAX8_uc010yxu.1_Silent_p.S79S|PAX8_uc010yxv.1_Silent_p.S79S|PAX8_uc002tjm.2_Silent_p.S79S|PAX8_uc002tjn.2_Silent_p.S79S|PAX8_uc010fku.1_Silent_p.S79S|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	79	Paired.				branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						CCTTGGGCTTGGAGCCCCCTA	0.557			T	PPARG	follicular thyroid		Thyroid dysgenesis 						57	110					0	0	0.014410	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													3	9					0	0	0.009096	0	0
GLI2	2736	broad.mit.edu	37	2	121744126	121744126	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:121744126C>T	uc010flp.2	+	12	2259	c.2229C>T	c.(2227-2229)TCC>TCT	p.S743S	GLI2_uc002tmq.1_Silent_p.S415S|GLI2_uc002tmr.1_Silent_p.S398S|GLI2_uc002tmt.3_Silent_p.S415S|GLI2_uc002tmu.3_Silent_p.S398S|GLI2_uc002tmw.1_Silent_p.S726S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	743					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TCAAGGATTCCTGCTCATGGG	0.617													16	27					0	0	0.012319	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192186	125192186	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:125192186T>C	uc002tno.2	+	5	1019	c.655T>C	c.(655-657)TTC>CTC	p.F219L	CNTNAP5_uc010flu.2_Missense_Mutation_p.F219L	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	219	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGGGGTCCTGTTCCATGGAGA	0.512													10	23					0	0	0.008291	0	0
MYO7B	4648	broad.mit.edu	37	2	128354112	128354112	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:128354112C>T	uc002top.2	+	19	2373	c.2320C>T	c.(2320-2322)CTT>TTT	p.L774F		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	774	IQ 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CCAGAAAGTCCTTCGGGGCTA	0.617													7	7					0	0	0.003080	0	0
POTEE	445582	broad.mit.edu	37	2	131976449	131976449	+	Silent	SNP	C	T	T	rs142484775		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:131976449C>T	uc002tsn.2	+	1	526	c.474C>T	c.(472-474)ATC>ATT	p.I158I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	158							ATP binding	p.I158I(1)			0						AGGATCTCATCGTCATGCTCA	0.577													19	81					0	0	0.012319	0	0
LOC401010	401010	broad.mit.edu	37	2	132201672	132201672	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:132201672G>A	uc002tst.2	-	1	796	c.330C>T	c.(328-330)TCC>TCT	p.S110S		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CTGCCACACAGGACACTAGCT	0.612													6	9					0	0	0.001168	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132905792	132905792	+	RNA	SNP	G	C	C	rs143919579	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:132905792G>C	uc002tti.3	-	7		c.1099C>G			NCRNA00164_uc002ttj.3_RNA	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						TGTTCCTTCAGATGTTCCTTC	0.443													2	9					0	0	0.004672	0	0
NCKAP5	344148	broad.mit.edu	37	2	133531389	133531389	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:133531389C>T	uc002ttp.2	-	16	5502	c.5128G>A	c.(5128-5130)GAA>AAA	p.E1710K	NCKAP5_uc002ttq.2_Missense_Mutation_p.E391K	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1710							protein binding				0						GAATTTTTACCTATGATGTGG	0.368													27	46					0	0	0.009535	0	0
LCT	3938	broad.mit.edu	37	2	136564955	136564955	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:136564955C>T	uc002tuu.1	-	9	3927	c.3916G>A	c.(3916-3918)GAT>AAT	p.D1306N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1306	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCTATACCATCGAGCCTGTAG	0.522													23	29					0	0	0.004656	0	0
THSD7B	80731	broad.mit.edu	37	2	137852488	137852488	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:137852488C>T	uc002tva.1	+	3	903	c.903C>T	c.(901-903)ATC>ATT	p.I301I	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Silent_p.I191I	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGTCCTGCATCATGCCCAAAG	0.488													31	44					0	0	0.010818	0	0
SPOPL	339745	broad.mit.edu	37	2	139307791	139307791	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:139307791C>T	uc002tvh.2	+	2	405	c.5C>T	c.(4-6)TCT>TTT	p.S2F		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	2						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		GTGGTGATGTCTCGGGAACCC	0.423													11	22					0	0	0.002450	0	0
MBD5	55777	broad.mit.edu	37	2	149240828	149240828	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:149240828C>T	uc002twm.3	+	10	3656	c.2668C>T	c.(2668-2670)CCT>TCT	p.P890S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P890S|MBD5_uc002two.2_5'Flank|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	890						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GAGTGATTTTCCTTTTGTTGG	0.498													46	48					0	0	0.013114	0	0
NEB	4703	broad.mit.edu	37	2	152359377	152359377	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:152359377C>T	uc010fnx.2	-	139	18946	c.18755G>A	c.(18754-18756)GGG>GAG	p.G6252E	NEB_uc002txr.2_Intron|RIF1_uc002txp.2_Intron|NEB_uc002txq.2_Missense_Mutation_p.G38E|NEB_uc010zca.1_Intron|NEB_uc010zcb.1_Intron|NEB_uc002txt.3_Intron	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6252	Nebulin 171.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GATTCCTTTCCCCAAATTTTC	0.418													8	10					0	0	0.008291	0	0
NEB	4703	broad.mit.edu	37	2	152563432	152563432	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:152563432A>G	uc010fnx.2	-	13	1306	c.1115T>C	c.(1114-1116)CTT>CCT	p.L372P	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	372	Nebulin 9.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAGCTGCCTAAGCTGTGGGTT	0.368													2	6					0	0	0.004672	0	0
PLA2R1	22925	broad.mit.edu	37	2	160801487	160801487	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:160801487C>T	uc002ube.1	-	28	4281	c.4074G>A	c.(4072-4074)AGG>AGA	p.R1358R	PLA2R1_uc010zcp.1_Silent_p.R1356R	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1358	Extracellular (Potential).|C-type lectin 8.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						CTTCAGGGATCCTCAAGGCAA	0.448													22	46					0	0	0.012319	0	0
TBR1	10716	broad.mit.edu	37	2	162274197	162274197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:162274197C>T	uc002ubw.1	+	2	1005	c.703C>T	c.(703-705)CCT>TCT	p.P235S	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	235	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GCGCATGTTTCCTTTTTTAAG	0.403													22	50					0	0	0.004656	0	0
KCNH7	90134	broad.mit.edu	37	2	163374555	163374555	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:163374555C>T	uc002uch.1	-	4	789	c.577G>A	c.(577-579)GAT>AAT	p.D193N	KCNH7_uc002uci.2_Missense_Mutation_p.D193N	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	193	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GCTACTGAATCATCACTGTGT	0.443													36	55					0	0	0.004878	0	0
SCN2A	6326	broad.mit.edu	37	2	166172127	166172127	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:166172127G>A	uc002udc.2	+	11	1820	c.1530G>A	c.(1528-1530)CAG>CAA	p.Q510Q	SCN2A_uc002udd.2_Silent_p.Q510Q|SCN2A_uc002ude.2_Silent_p.Q510Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	510					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	aaaagaaacagaaagaacagt	0.299													9	26					0	0	0.004482	0	0
SCN2A	6326	broad.mit.edu	37	2	166243376	166243376	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:166243376G>A	uc002udc.2	+	26	4962	c.4672G>A	c.(4672-4674)GAA>AAA	p.E1558K	SCN2A_uc002udd.2_Missense_Mutation_p.E1558K|SCN2A_uc002ude.2_Missense_Mutation_p.E1558K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1558	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CCAGAGTCAAGAAATGACAAA	0.388													16	24					0	0	0.004990	0	0
CSRNP3	80034	broad.mit.edu	37	2	166514388	166514388	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:166514388G>A	uc002udf.2	+	5	642	c.266G>A	c.(265-267)GGA>GAA	p.G89E	CSRNP3_uc002udg.2_Missense_Mutation_p.G89E	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	89					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						AGTCAAGGGGGAAGCACCCTG	0.547													12	19					0	0	0.010729	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535902	166535902	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:166535902C>T	uc002udf.2	+	7	1773	c.1397C>T	c.(1396-1398)TCG>TTG	p.S466L	CSRNP3_uc002udg.2_Missense_Mutation_p.S466L	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	466					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						GGTACCCTTTCGCTGGTGCCT	0.488													10	21					0	0	0.008291	0	0
SCN1A	6323	broad.mit.edu	37	2	166866236	166866236	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:166866236C>T	uc010zcz.1	-	20	3980	c.3962G>A	c.(3961-3963)GGG>GAG	p.G1321E	SCN1A_uc002udo.3_Missense_Mutation_p.G1201E|SCN1A_uc010fpk.2_Missense_Mutation_p.G1173E	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1332	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TACCCTCATCCCTTCAAATCG	0.358													8	20					0	0	0.004482	0	0
SCN9A	6335	broad.mit.edu	37	2	167055491	167055491	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:167055491C>T	uc010fpl.2	-	27	5966	c.5625G>A	c.(5623-5625)CGG>CGA	p.R1875R	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1886						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCTCTTGTTTCCGTTTTAGTG	0.403													49	73					0	0	0.014410	0	0
SCN9A	6335	broad.mit.edu	37	2	167137063	167137063	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:167137063C>T	uc010fpl.2	-	14	2455	c.2114G>A	c.(2113-2115)AGA>AAA	p.R705K	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	716						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GTGTGCAAATCTGTACCACCA	0.373													5	7					0	0	0.001984	0	0
SCN7A	6332	broad.mit.edu	37	2	167262832	167262832	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:167262832C>T	uc002udu.1	-	25	4434	c.4307G>A	c.(4306-4308)TGG>TAG	p.W1436*		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1436					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CATCCCATCCCAACCAGCAAA	0.393													40	92					0	0	0.009718	0	0
XIRP2	129446	broad.mit.edu	37	2	168101944	168101944	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:168101944C>T	uc002udx.2	+	8	4060	c.4042C>T	c.(4042-4044)CGA>TGA	p.R1348*	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Nonsense_Mutation_p.R1173*|XIRP2_uc010fpq.2_Nonsense_Mutation_p.R1126*|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1173	Xin 23.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGGAGATGTGCGAGGAACAAG	0.383													11	19					0	0	0.010729	0	0
XIRP2	129446	broad.mit.edu	37	2	168108439	168108439	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:168108439G>A	uc002udx.2	+	8	10555	c.10537G>A	c.(10537-10539)GAA>AAA	p.E3513K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E3338K|XIRP2_uc010fpq.2_Missense_Mutation_p.E3291K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3338					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTTCCAAGAGGAATCTGCATT	0.388													18	32					0	0	0.014323	0	0
ABCB11	8647	broad.mit.edu	37	2	169791706	169791706	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:169791706C>T	uc002ueo.1	-	23	3170	c.3044G>A	c.(3043-3045)AGC>AAC	p.S1015N	ABCB11_uc010zda.1_Missense_Mutation_p.S457N|ABCB11_uc010zdb.1_Missense_Mutation_p.S491N	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1015	Helical; (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GAACACATAGCTGAAATGGAG	0.388													43	66					0	0	0.014410	0	0
LRP2	4036	broad.mit.edu	37	2	170096222	170096222	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:170096222C>T	uc002ues.2	-	26	4322	c.4109G>A	c.(4108-4110)GGG>GAG	p.G1370E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1370	Extracellular (Potential).|EGF-like 5.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCATTTAGCCCCAAAGGGCTC	0.403													20	36					0	0	0.008871	0	0
PPIG	9360	broad.mit.edu	37	2	170493773	170493773	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:170493773C>T	uc002uez.2	+	14	2225	c.2005C>T	c.(2005-2007)CGT>TGT	p.R669C	PPIG_uc010fpx.2_Missense_Mutation_p.R654C|PPIG_uc010fpy.2_Missense_Mutation_p.R662C|PPIG_uc002ufb.2_Missense_Mutation_p.R669C|PPIG_uc002ufd.2_Missense_Mutation_p.R666C	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	669					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CTCTAAAAGTCGTGATCATAA	0.343													16	39					0	0	0.008871	0	0
MYO3B	140469	broad.mit.edu	37	2	171092559	171092559	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:171092559C>T	uc002ufy.2	+	7	805	c.662C>T	c.(661-663)TCC>TTC	p.S221F	MYO3B_uc002ufv.2_Missense_Mutation_p.S208F|MYO3B_uc010fqb.1_Missense_Mutation_p.S208F|MYO3B_uc002ufz.2_Missense_Mutation_p.S221F|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.S208F	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	221	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GACGTCTGGTCCTTGGGGATC	0.493											OREG0014376	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	51					0	0	0.009535	0	0
HAT1	8520	broad.mit.edu	37	2	172841174	172841174	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:172841174C>T	uc002uhi.2	+	9	978	c.902C>T	c.(901-903)TCC>TTC	p.S301F	HAT1_uc010fqi.2_Missense_Mutation_p.S136F|HAT1_uc002uhj.2_Missense_Mutation_p.S216F	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	301					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			CCCTGTTTTTCCCGGGAAAAA	0.348													5	16					0	0	0.014758	0	0
CDCA7	83879	broad.mit.edu	37	2	174228142	174228142	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:174228142G>A	uc002uid.1	+	3	467	c.336G>A	c.(334-336)ATG>ATA	p.M112I	CDCA7_uc002uic.1_Missense_Mutation_p.M191I|CDCA7_uc010zej.1_Missense_Mutation_p.M147I|CDCA7_uc010zek.1_Missense_Mutation_p.M70I	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	112					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			AAAGTGGAATGAATTTTTTGG	0.403													22	22					0	0	0.016522	0	0
TTN	7273	broad.mit.edu	37	2	179427557	179427557	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179427557T>C	uc010zfg.1	-	275	75822	c.75598A>G	c.(75598-75600)AGT>GGT	p.S25200G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S18895G|TTN_uc010zfi.1_Missense_Mutation_p.S18828G|TTN_uc010zfj.1_Missense_Mutation_p.S18703G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26127							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGGGGCACTTGGTGAGTCA	0.403													4	11					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179439073	179439073	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179439073C>T	uc010zfg.1	-	275	64306	c.64082G>A	c.(64081-64083)GGA>GAA	p.G21361E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15056E|TTN_uc010zfi.1_Missense_Mutation_p.G14989E|TTN_uc010zfj.1_Missense_Mutation_p.G14864E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22288							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTGGTTTTCCAGGTGGGTC	0.428													30	61					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179441334	179441334	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179441334G>A	uc010zfg.1	-	274	62157	c.61933C>T	c.(61933-61935)CGT>TGT	p.R20645C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14340C|TTN_uc010zfi.1_Missense_Mutation_p.R14273C|TTN_uc010zfj.1_Missense_Mutation_p.R14148C|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21572							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTGACACGGAATTCGTAG	0.443													47	90					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179443621	179443621	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179443621C>T	uc010zfg.1	-	269	60656	c.60432G>A	c.(60430-60432)ATG>ATA	p.M20144I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.M13839I|TTN_uc010zfi.1_Missense_Mutation_p.M13772I|TTN_uc010zfj.1_Missense_Mutation_p.M13647I|uc002umv.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21071							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTATATTCCATGCCCTCAT	0.463													22	58					0	0	0.016522	0	0
TTN	7273	broad.mit.edu	37	2	179452456	179452456	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179452456G>A	uc010zfg.1	-	255	56100	c.55876C>T	c.(55876-55878)CTC>TTC	p.L18626F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L12321F|TTN_uc010zfi.1_Missense_Mutation_p.L12254F|TTN_uc010zfj.1_Missense_Mutation_p.L12129F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19553							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAGCAAAGAGACGAATAGGG	0.448													14	15					0	0	0.016723	0	0
TTN	7273	broad.mit.edu	37	2	179522846	179522846	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179522846G>A	uc010zfk.1	-	29	2574	c.2026C>T	c.(2026-2028)CCC>TCC	p.P676S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11919							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGCCACGGGAATTTCTTTT	0.408													22	44					0	0	0.013726	0	0
TTN	7273	broad.mit.edu	37	2	179553825	179553825	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179553825C>T	uc010zfg.1	-	122	28542	c.28318G>A	c.(28318-28320)GTT>ATT	p.V9440I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V6101I|TTN_uc010fre.1_Missense_Mutation_p.V551I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10367							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCACTGCAACTTTCTCCTCT	0.418													18	44					0	0	0.014323	0	0
TTN	7273	broad.mit.edu	37	2	179566927	179566927	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179566927C>T	uc010zfg.1	-	105	26971	c.26747G>A	c.(26746-26748)AGA>AAA	p.R8916K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R5577K|TTN_uc010fre.1_Missense_Mutation_p.R27K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9843							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCGTGCTTCTTGCTTCACC	0.483													9	25					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179569645	179569645	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179569645C>T	uc010zfg.1	-	101	26145	c.25921G>A	c.(25921-25923)GAA>AAA	p.E8641K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5302K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9568							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATACAAGTTCCTCAAATTCC	0.308													37	58					0	0	0.007835	0	0
TTN	7273	broad.mit.edu	37	2	179586847	179586847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179586847G>A	uc010zfg.1	-	75	19035	c.18811C>T	c.(18811-18813)CCC>TCC	p.P6271S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P2932S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7198							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAAAGAAGGGAGATTTCTTG	0.388													58	86					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179595317	179595317	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179595317C>T	uc010zfg.1	-	58	14435	c.14211G>A	c.(14209-14211)CTG>CTA	p.L4737L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L1398L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5664							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTACCTTCCAGCTGGCTGA	0.423													49	55					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179597199	179597199	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179597199C>T	uc010zfg.1	-	53	13081	c.12857G>A	c.(12856-12858)GGG>GAG	p.G4286E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G947E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5213							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATTCCACCCCTCCAGCGAC	0.383													17	28					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179604492	179604492	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179604492C>T	uc010zfh.1	-	46	13179	c.12955G>A	c.(12955-12957)GCT>ACT	p.A4319T	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.A4252T|TTN_uc010zfj.1_Missense_Mutation_p.A4127T|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGACCCTCAGCTGTTAGGATG	0.388													40	157					0	0	0.010771	0	0
TTN	7273	broad.mit.edu	37	2	179613203	179613203	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179613203C>T	uc002unb.2	-	46	14148	c.13924G>A	c.(13924-13926)GAA>AAA	p.E4642K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	756							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATGTATTTCCTGCTGTTCC	0.368													27	48					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179615154	179615154	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179615154G>A	uc002unb.2	-	46	12197	c.11973C>T	c.(11971-11973)ATC>ATT	p.I3991I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGAATGAATGATAAAGTTTT	0.338													17	25					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179616367	179616367	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179616367C>T	uc002unb.2	-	46	10984	c.10760G>A	c.(10759-10761)GGG>GAG	p.G3587E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3582							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTGCAGACCCTTCACTATT	0.383													35	52					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179650739	179650739	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179650739C>T	uc010zfg.1	-	14	2430	c.2206G>A	c.(2206-2208)GGA>AGA	p.G736R	TTN_uc010zfh.1_Missense_Mutation_p.G690R|TTN_uc010zfi.1_Missense_Mutation_p.G690R|TTN_uc010zfj.1_Missense_Mutation_p.G690R|TTN_uc002unb.2_Missense_Mutation_p.G736R|TTN_uc010frg.1_Missense_Mutation_p.G318R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	736							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTATATCCGTACTCCAAA	0.537													17	29					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179655479	179655479	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:179655479C>T	uc010zfg.1	-	11	1980	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Missense_Mutation_p.E586K|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	586							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGTAGTTTCTTCTTGAGCT	0.423													29	50					0	0	0.008361	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800856	185800856	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:185800856G>A	uc002uph.2	+	4	1327	c.733G>A	c.(733-735)GGA>AGA	p.G245R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	245						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AGTGGGAAAAGGATTTAGCAG	0.423													17	34					0	0	0.006122	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801225	185801225	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:185801225G>A	uc002uph.2	+	4	1696	c.1102G>A	c.(1102-1104)GAT>AAT	p.D368N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	368						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CATGTCTAATGATTGCATATC	0.388													9	22					0	0	0.006214	0	0
ITGAV	3685	broad.mit.edu	37	2	187531934	187531934	+	Silent	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:187531934T>A	uc002upq.2	+	23	2580	c.2304T>A	c.(2302-2304)GTT>GTA	p.V768V	ITGAV_uc010frs.2_Silent_p.V732V|ITGAV_uc010zfv.1_Silent_p.V722V	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	768	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		ATCTTGCTGTTTTAGCTGCAG	0.333													18	24					0	0	0.007413	0	0
COL5A2	1290	broad.mit.edu	37	2	189901355	189901355	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:189901355T>C	uc002uqk.2	-	52	4375	c.4100A>G	c.(4099-4101)AAC>AGC	p.N1367S	COL5A2_uc010frx.2_Missense_Mutation_p.N943S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1367	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			AGACCCTCTGTTCATATCAAG	0.323													10	9					0	0	0.008291	0	0
COL5A2	1290	broad.mit.edu	37	2	189932833	189932833	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:189932833G>A	uc002uqk.2	-	21	1584	c.1309C>T	c.(1309-1311)CCG>TCG	p.P437S	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	437					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GAGGTACCTGGAGAGCCCTAT	0.537													32	35					0	0	0.010818	0	0
STAT4	6775	broad.mit.edu	37	2	191905875	191905875	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:191905875C>T	uc002usm.1	-	15	1506	c.1252_splice	c.e15-1	p.G418_splice	STAT4_uc002usn.1_Splice_Site_p.G418_splice|STAT4_uc010zgk.1_Splice_Site_p.G263_splice|STAT4_uc002uso.2_Splice_Site_p.G418_splice	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription						JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TGTGACAGCCCTAAGGAAGAG	0.328													13	39					0	0	0.013537	0	0
OBFC2A	64859	broad.mit.edu	37	2	192550392	192550393	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:192550392_192550393CC>TT	uc002usx.2	+	6	993_994	c.513_514CC>TT	c.(511-516)GGCCGG>GGTTGG	p.R172W	OBFC2A_uc002usw.2_Missense_Mutation_p.R92W|OBFC2A_uc002usy.2_RNA|OBFC2A_uc002usz.2_RNA|OBFC2A_uc002uta.2_Missense_Mutation_p.R86W	NM_001031716	NP_001026886	Q96AH0	SOSB2_HUMAN	oligonucleotide/oligosaccharide-binding fold	172					double-strand break repair via homologous recombination|G2/M transition checkpoint|response to ionizing radiation	SOSS complex	single-stranded DNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.061)|Epithelial(96;0.244)			GAAGCAATGGCCGGGGACTTAT	0.416													5	14					0	0	0.004672	0	0
SDPR	8436	broad.mit.edu	37	2	192701141	192701141	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:192701141G>A	uc002utb.2	-	2	1116	c.786C>T	c.(784-786)ATC>ATT	p.I262I		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	262	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CTACAGATACGATCTTTGTCC	0.418													57	146					0	0	0.014410	0	0
DNAH7	56171	broad.mit.edu	37	2	196636429	196636429	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:196636429C>T	uc002utj.3	-	61	11489	c.11388G>A	c.(11386-11388)CTG>CTA	p.L3796L	DNAH7_uc002uti.3_Silent_p.L279L	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3796					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTATGGTCTTCAGTAACTTAT	0.378													34	74					0	0	0.006999	0	0
DNAH7	56171	broad.mit.edu	37	2	196722428	196722428	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:196722428G>A	uc002utj.3	-	44	8188	c.8087C>T	c.(8086-8088)TCC>TTC	p.S2696F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2696	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTCTTCATGGATTTTACCAC	0.358													10	12					0	0	0.013537	0	0
DNAH7	56171	broad.mit.edu	37	2	196822128	196822128	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:196822128C>T	uc002utj.3	-	19	3036	c.2935G>A	c.(2935-2937)GAA>AAA	p.E979K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	979	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGAGCCATTCATCCAGAATC	0.478													15	20					0	0	0.004007	0	0
DNAH7	56171	broad.mit.edu	37	2	196825422	196825422	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:196825422G>A	uc002utj.3	-	18	2554	c.2453C>T	c.(2452-2454)CCA>CTA	p.P818L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	818	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAATGCATATGGAGAATCATG	0.393													33	52					0	0	0.009535	0	0
ANKRD44	91526	broad.mit.edu	37	2	197870442	197870442	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:197870442G>A	uc002uua.1	-	21	2325	c.2248C>T	c.(2248-2250)CCG>TCG	p.P750S	ANKRD44_uc002utz.3_Missense_Mutation_p.P482S	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	775	ANK 23.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CAGTGCAGCGGCGTGTAGCCT	0.532													31	36					0	0	0.013726	0	0
PARD3B	117583	broad.mit.edu	37	2	206165332	206165332	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:206165332C>T	uc002var.1	+	17	2471	c.2264C>T	c.(2263-2265)GCC>GTC	p.A755V	PARD3B_uc010fub.1_Missense_Mutation_p.A755V|PARD3B_uc002vao.1_Missense_Mutation_p.A755V|PARD3B_uc002vap.1_Missense_Mutation_p.A693V|PARD3B_uc002vaq.1_Intron	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	755					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		ACTGCAGTGGCCGAGGTCAGG	0.522													42	54					0	0	0.006999	0	0
NRP2	8828	broad.mit.edu	37	2	206592670	206592670	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:206592670C>T	uc002vaw.2	+	7	1837	c.1046C>T	c.(1045-1047)TCC>TTC	p.S349F	NRP2_uc002vat.2_Missense_Mutation_p.S349F|NRP2_uc002vau.2_Missense_Mutation_p.S349F|NRP2_uc002vav.2_Missense_Mutation_p.S349F|NRP2_uc002vax.2_Missense_Mutation_p.S349F|NRP2_uc002vay.2_Missense_Mutation_p.S349F|NRP2_uc010fud.2_Missense_Mutation_p.S349F	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	349	Extracellular (Potential).|F5/8 type C 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GGAGCGATTTCCAGGGAAACA	0.512													9	18					0	0	0.006214	0	0
ZDBF2	57683	broad.mit.edu	37	2	207176154	207176154	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:207176154T>C	uc002vbp.2	+	5	7152	c.6902T>C	c.(6901-6903)GTT>GCT	p.V2301A		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2301							nucleic acid binding|zinc ion binding			ovary(3)	3						TCTTGCCGCGTTGCAAGAAGG	0.507													3	8					0	0	0.009096	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208841613	208841613	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:208841613G>A	uc002vcl.2	-	3	1798	c.1308C>T	c.(1306-1308)CTC>CTT	p.L436L	PLEKHM3_uc002vcm.2_Silent_p.L436L	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	436	PH 2.				intracellular signal transduction		metal ion binding			ovary(1)	1						TCTCAGCTCGGAGGCGAAGGA	0.547													17	25					0	0	0.004990	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208865975	208865975	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:208865975G>A	uc002vcl.2	-	2	879	c.389C>T	c.(388-390)CCT>CTT	p.P130L	PLEKHM3_uc002vcm.2_Missense_Mutation_p.P130L	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	130					intracellular signal transduction		metal ion binding			ovary(1)	1						TACAGAACGAGGCCGGTCCCT	0.483													20	32					0	0	0.016522	0	0
CPS1	1373	broad.mit.edu	37	2	211473172	211473172	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:211473172C>T	uc002vee.3	+	19	2412	c.2280C>T	c.(2278-2280)GCC>GCT	p.A760A	CPS1_uc010fur.2_Silent_p.A766A|CPS1_uc010fus.2_Silent_p.A309A	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	760					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AGACATCAGCCTGTTTTGAAC	0.448													29	46					0	0	0.008361	0	0
ERBB4	2066	broad.mit.edu	37	2	212426678	212426678	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:212426678C>T	uc002veg.1	-	20	2535	c.2437G>A	c.(2437-2439)GAT>AAT	p.D813N	ERBB4_uc002veh.1_Missense_Mutation_p.D813N|ERBB4_uc010zji.1_Missense_Mutation_p.D803N|ERBB4_uc010zjj.1_Missense_Mutation_p.D803N|ERBB4_uc010fut.1_Missense_Mutation_p.D813N	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	813	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CCAATGTTATCCTTGTGCTCG	0.458										TSP Lung(8;0.080)			43	54					0	0	0.013114	0	0
ERBB4	2066	broad.mit.edu	37	2	212488718	212488718	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:212488718G>A	uc002veg.1	-	18	2229	c.2131C>T	c.(2131-2133)CGT>TGT	p.R711C	ERBB4_uc002veh.1_Missense_Mutation_p.R711C|ERBB4_uc010zji.1_Missense_Mutation_p.R701C|ERBB4_uc010zjj.1_Missense_Mutation_p.R701C|ERBB4_uc010fut.1_Missense_Mutation_p.R711C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	711	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTCAAAATACGAAGTTGAGCT	0.418										TSP Lung(8;0.080)			13	23					0	0	0.002450	0	0
ERBB4	2066	broad.mit.edu	37	2	212587137	212587137	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:212587137G>A	uc002veg.1	-	7	962	c.864C>T	c.(862-864)TTC>TTT	p.F288F	ERBB4_uc002veh.1_Silent_p.F288F|ERBB4_uc010zji.1_Silent_p.F288F|ERBB4_uc010zjj.1_Silent_p.F288F|ERBB4_uc010fut.1_Silent_p.F288F	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	288	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TCTTGACACAGAATGCTCCAT	0.338										TSP Lung(8;0.080)			9	21					0	0	0.008291	0	0
MIR548F-2	100302154	broad.mit.edu	37	2	213291021	213291021	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:213291021G>A	hsa-mir-548f-2|MI0006375	-			c.64G>A			ERBB4_uc002veg.1_Intron|ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Intron																	0						agtaattacagtttttgccat	0.169													8	10					0	0	0.003080	0	0
ABCA12	26154	broad.mit.edu	37	2	215818596	215818596	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:215818596G>A	uc002vew.2	-	44	6849	c.6629C>T	c.(6628-6630)TCC>TTC	p.S2210F	ABCA12_uc002vev.2_Missense_Mutation_p.S1892F|ABCA12_uc010zjn.1_Missense_Mutation_p.S1137F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2210					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTTATCAGGGATTCGTTGAT	0.353													8	12					0	0	0.004482	0	0
ABCA12	26154	broad.mit.edu	37	2	215818600	215818600	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:215818600C>T	uc002vew.2	-	44	6845	c.6625G>A	c.(6625-6627)GAA>AAA	p.E2209K	ABCA12_uc002vev.2_Missense_Mutation_p.E1891K|ABCA12_uc010zjn.1_Missense_Mutation_p.E1136K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2209					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ATCAGGGATTCGTTGATTAAG	0.348													8	12					0	0	0.004482	0	0
STK36	27148	broad.mit.edu	37	2	219563402	219563402	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:219563402C>T	uc002viu.2	+	26	3401	c.3135C>T	c.(3133-3135)CCC>CCT	p.P1045P	STK36_uc002viv.2_Silent_p.P1024P|STK36_uc002viw.2_Silent_p.P223P|STK36_uc002vix.2_Silent_p.P90P	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1045					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		TCATGGATCCCACCTCTCTCA	0.547													63	98					0	0	0.014410	0	0
TTLL4	9654	broad.mit.edu	37	2	219617875	219617876	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:219617875_219617876CC>TT	uc002viy.2	+	18	3595_3596	c.3225_3226CC>TT	c.(3223-3228)TTCCAC>TTTTAC	p.H1076Y	TTLL4_uc010zkl.1_Missense_Mutation_p.H911Y|TTLL4_uc010fvx.2_Missense_Mutation_p.H1012Y|TTLL4_uc010zkm.1_3'UTR	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1076					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		ACAAAGGGTTCCACATGGGAGT	0.52													63	119					0	0	0.004672	0	0
CYP27A1	1593	broad.mit.edu	37	2	219677772	219677772	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:219677772G>A	uc002viz.3	+	5	1404	c.970G>A	c.(970-972)GAG>AAG	p.E324K		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	324					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	CAGTCCTCGGGAGGCCATGGG	0.637													14	20					0	0	0.003163	0	0
CCDC108	255101	broad.mit.edu	37	2	219870227	219870228	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:219870227_219870228GG>AT	uc002vjl.1	-	32	5063_5064	c.4979_4980CC>AT	c.(4978-4980)TCC>TAT	p.S1660Y		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1660						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTTGTTAGGGGATTTTTCCTC	0.55													20	26					0	0	0.004672	0	0
EPHA4	2043	broad.mit.edu	37	2	222298879	222298879	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:222298879C>T	uc002vmq.2	-	14	2521	c.2479G>A	c.(2479-2481)GAT>AAT	p.D827N	EPHA4_uc002vmr.2_Missense_Mutation_p.D827N|EPHA4_uc010zlm.1_Missense_Mutation_p.D768N|EPHA4_uc010zln.1_Missense_Mutation_p.D827N	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	827	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TTGGACATATCCCAATAGGGC	0.418													25	27					0	0	0.005443	0	0
MOGAT1	116255	broad.mit.edu	37	2	223554070	223554070	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:223554070G>A	uc010fws.1	+	3	408	c.360G>A	c.(358-360)GGG>GGA	p.G120G	MOGAT1_uc010fwt.1_Silent_p.G80G	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	120					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		GAGCCTTTGGGAATTTTTCTG	0.413													21	29					0	0	0.012319	0	0
ACSL3	2181	broad.mit.edu	37	2	223773608	223773608	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:223773608C>T	uc002vni.2	+	4	569	c.118C>T	c.(118-120)CCG>TCG	p.P40S	ACSL3_uc002vnj.2_Missense_Mutation_p.P40S	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	40	Helical; Signal-anchor for type III membrane protein; (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	AACATACATTCCGTTTTATTT	0.289			T	ETV1	prostate								14	31					0	0	0.016723	0	0
COL4A4	1286	broad.mit.edu	37	2	227875158	227875158	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:227875158C>T	uc010zlt.1	-	45	5047	c.4393G>A	c.(4393-4395)GGC>AGC	p.G1465S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1465	Collagen IV NC1.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGGAGGAAGCCACCGAGGTAT	0.592													15	16					0	0	0.002450	0	0
COL4A4	1286	broad.mit.edu	37	2	227924164	227924164	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:227924164C>T	uc010zlt.1	-	28	2994	c.2340G>A	c.(2338-2340)GGG>GGA	p.G780G		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	780	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GTCCTTTTATCCCTGGCACTC	0.567													44	73					0	0	0.014410	0	0
COL4A4	1286	broad.mit.edu	37	2	227979412	227979412	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:227979412C>T	uc010zlt.1	-	8	1144	c.490G>A	c.(490-492)GGC>AGC	p.G164S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	164	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCAGGATGGCCCTGAAAATAA	0.299													8	25					0	0	0.003080	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884543	228884543	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:228884543C>T	uc002vpq.2	-	7	1074	c.1027G>A	c.(1027-1029)GAT>AAT	p.D343N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D343N|SPHKAP_uc010zlx.1_Missense_Mutation_p.D343N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	343						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AAATAAGCATCTTTTGGAATA	0.413													31	49					0	0	0.008361	0	0
TRIP12	9320	broad.mit.edu	37	2	230632389	230632389	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:230632389G>A	uc002vpw.1	-	41	5969	c.5860C>T	c.(5860-5862)CCC>TCC	p.P1954S	TRIP12_uc002vpx.1_Missense_Mutation_p.P2002S|TRIP12_uc002vpy.1_Missense_Mutation_p.P1684S	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1954	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		ATTACAGAGGGCAAGAAGTCA	0.408													23	41					0	0	0.018920	0	0
COPS7B	64708	broad.mit.edu	37	2	232660846	232660846	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:232660846C>T	uc002vsg.1	+	5	461	c.358C>T	c.(358-360)CTG>TTG	p.L120L	COPS7B_uc010fxy.1_Silent_p.L86L|COPS7B_uc002vsh.1_Silent_p.L120L|COPS7B_uc002vsi.1_Silent_p.L13L|COPS7B_uc002vsj.1_RNA|COPS7B_uc002vsk.1_Silent_p.L13L	NM_022730	NP_073567	Q9H9Q2	CSN7B_HUMAN	COP9 constitutive photomorphogenic homolog	120	PCI.				cullin deneddylation	cytoplasm|signalosome				ovary(1)|liver(1)|skin(1)	3		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Renal(207;0.025)		Epithelial(121;1.36e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00136)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		GCTGAAAGACCTGGAGATGCG	0.478													17	26					0	0	0.004990	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581418	234581418	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:234581418G>A	uc002vus.2	+	1	875	c.838G>A	c.(838-840)GGA>AGA	p.G280R	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.G280R	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	280				QGKP -> ERKA (in Ref. 1; AAB19791).	drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	CTGCCATCAGGGAAAGCCGTT	0.413													63	63					0	0	0.014410	0	0
UGT1A5	54579	broad.mit.edu	37	2	234681080	234681080	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:234681080G>A	uc002vuw.2	+	5	1480	c.1480G>A	c.(1480-1482)GGT>AGT	p.G494S	UGT1A8_uc002vup.2_Missense_Mutation_p.G490S|UGT1A10_uc002vur.2_Missense_Mutation_p.G490S|UGT1A9_uc002vus.2_Missense_Mutation_p.G490S|UGT1A7_uc002vut.2_Missense_Mutation_p.G490S|UGT1A6_uc002vuu.2_Missense_Mutation_p.G225S|UGT1A6_uc002vuv.3_Missense_Mutation_p.G492S|UGT1A4_uc002vux.2_Missense_Mutation_p.G494S|UGT1A3_uc002vuy.2_Missense_Mutation_p.G494S|UGT1A9_uc002vva.2_RNA|UGT1A1_uc002vvb.2_Missense_Mutation_p.G493S	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	494	Helical; (Potential).				xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GGACGTGATTGGTTTCCTCTT	0.547													36	45					0	0	0.004878	0	0
MSL3L2	151507	broad.mit.edu	37	2	234774950	234774950	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:234774950C>T	uc010znf.1	-	2	1130	c.892G>A	c.(892-894)GAA>AAA	p.E298K		NR_024322				SubName: Full=cDNA FLJ52683, highly similar to Male-specific lethal 3-like 1; SubName: Full=cDNA, FLJ79271, highly similar to Male-specific lethal 3-like 1; SubName: Full=HCG1642047;												0						CCAAGAATTTCTGGAAGTTTG	0.433													14	21					0	0	0.002450	0	0
COL6A3	1293	broad.mit.edu	37	2	238247693	238247693	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:238247693G>A	uc002vwl.2	-	39	8817	c.8532C>T	c.(8530-8532)CCC>CCT	p.P2844P	COL6A3_uc002vwo.2_Silent_p.P2638P|COL6A3_uc010znj.1_Silent_p.P2237P|COL6A3_uc002vwj.2_Silent_p.P225P	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2844	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGTTCTTTGTGGGTTGGTCCC	0.274													20	28					0	0	0.016522	0	0
RBM44	375316	broad.mit.edu	37	2	238726791	238726791	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:238726791C>T	uc002vxi.3	+	3	1364	c.1232C>T	c.(1231-1233)TCT>TTT	p.S411F		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	410							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		TTAGATTTTTCTGCTATGCTA	0.388													14	19					0	0	0.016723	0	0
OR6B3	150681	broad.mit.edu	37	2	240984529	240984529	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:240984529C>T	uc010zoe.1	-	1	961	c.961G>A	c.(961-963)GAA>AAA	p.E321K	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	321	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		AGATGAAGTTCCAGAAGACTA	0.423													33	60					0	0	0.013726	0	0
C2orf54	79919	broad.mit.edu	37	2	241831030	241831031	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr2:241831030_241831031CC>TT	uc002wae.3	-	2	823_824	c.664_665GG>AA	c.(664-666)GGA>AAA	p.G222K	C2orf54_uc002wac.2_Missense_Mutation_p.G54K|C2orf54_uc002wad.2_Missense_Mutation_p.G73K	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	222											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		CTCAGGGAATCCGGGCATCTGC	0.658													32	39					0	0	0.004672	0	0
TGM6	343641	broad.mit.edu	37	20	2378688	2378688	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:2378688C>T	uc002wfy.1	+	5	729	c.668C>T	c.(667-669)GCC>GTC	p.A223V	TGM6_uc010gal.1_Missense_Mutation_p.A223V	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	223					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GTCATCAGTGCCATGGTGAGA	0.592													25	6					0	0	0.018920	0	0
TMC2	117532	broad.mit.edu	37	20	2591082	2591082	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:2591082C>T	uc002wgf.1	+	12	1446	c.1431C>T	c.(1429-1431)TCC>TCT	p.S477S	TMC2_uc002wgg.1_Silent_p.S461S|TMC2_uc010zpw.1_Silent_p.S309S|TMC2_uc010zpx.1_Silent_p.S308S	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	477	Extracellular (Potential).					integral to membrane				ovary(3)	3						TCGTGATGTCCCTGCTTGGAA	0.512													97	56					0	0	0.014410	0	0
PLCB1	23236	broad.mit.edu	37	20	8639324	8639324	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:8639324G>A	uc002wnb.2	+	9	838	c.835G>A	c.(835-837)GAA>AAA	p.E279K	PLCB1_uc010zrb.1_Missense_Mutation_p.E178K|PLCB1_uc002wna.2_Missense_Mutation_p.E279K|PLCB1_uc002wnc.1_Missense_Mutation_p.E178K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	279					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGAGAAGTATGAACCCAACAA	0.433													12	63					0	0	0.002450	0	0
PLCB4	5332	broad.mit.edu	37	20	9434098	9434098	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:9434098G>A	uc002wnf.2	+	31	3085	c.2949G>A	c.(2947-2949)ATG>ATA	p.M983I	PLCB4_uc010gbw.1_Missense_Mutation_p.M983I|PLCB4_uc010gbx.2_Missense_Mutation_p.M995I|PLCB4_uc002wne.2_Missense_Mutation_p.M983I|PLCB4_uc002wnh.2_Missense_Mutation_p.M830I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	983					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGAAGGCAATGAAGAAGAAGG	0.388													19	9					0	0	0.008871	0	0
PAK7	57144	broad.mit.edu	37	20	9543656	9543656	+	Missense_Mutation	SNP	C	T	T	rs140682624		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:9543656C>T	uc002wnl.2	-	7	2043	c.1498G>A	c.(1498-1500)GAT>AAT	p.D500N	PAK7_uc002wnk.2_Missense_Mutation_p.D500N|PAK7_uc002wnj.2_Missense_Mutation_p.D500N|PAK7_uc010gby.1_Missense_Mutation_p.D500N	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	500	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity	p.D500N(1)		lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TGGTGGTAATCCCGCATGATC	0.458													94	36					0	0	0.014410	0	0
KIF16B	55614	broad.mit.edu	37	20	16360169	16360169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:16360169G>A	uc002wpg.1	-	19	2636	c.2478C>T	c.(2476-2478)TTC>TTT	p.F826F	KIF16B_uc002wpe.1_Silent_p.F208F|KIF16B_uc002wpf.1_Silent_p.F208F|KIF16B_uc010gch.1_Silent_p.F826F|KIF16B_uc010gci.1_Silent_p.F826F|KIF16B_uc010gcj.1_Silent_p.F837F	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	826	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TCTTGAATTCGAAGAAACGCA	0.507													12	41					0	0	0.010729	0	0
SEC23B	10483	broad.mit.edu	37	20	18496297	18496297	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:18496297C>T	uc002wqz.1	+	4	726	c.283C>T	c.(283-285)CCT>TCT	p.P95S	SEC23B_uc002wra.1_Missense_Mutation_p.P95S|SEC23B_uc002wrb.1_Missense_Mutation_p.P95S|SEC23B_uc010zsb.1_Missense_Mutation_p.P95S|SEC23B_uc002wrc.1_Missense_Mutation_p.P95S	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	95					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						TTTTCAGTTTCCTCCAGCTTA	0.323													4	41					0	0	0.014758	0	0
XRN2	22803	broad.mit.edu	37	20	21335474	21335474	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:21335474C>T	uc002wsf.1	+	21	2079	c.1984C>T	c.(1984-1986)CTA>TTA	p.L662L	XRN2_uc002wsg.1_Silent_p.L586L|XRN2_uc010zsk.1_Silent_p.L608L	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	662					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						ACGAGCTGCCCTAGAAGAGGT	0.413													7	33					0	0	0.003080	0	0
ZNF337	26152	broad.mit.edu	37	20	25656124	25656124	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:25656124G>A	uc002wva.2	-	4	2322	c.1800C>T	c.(1798-1800)TTC>TTT	p.F600F	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Silent_p.F568F|ZNF337_uc002wvb.2_Silent_p.F600F|ZNF337_uc002wvc.2_Silent_p.F600F	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	600	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACTACAGATGAAAGGCTTCT	0.478													14	83					0	0	0.003163	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358													4	23					0	0	0.014758	0	0
PLUNC	51297	broad.mit.edu	37	20	31829206	31829206	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:31829206C>T	uc002wyv.2	+	6	667	c.597C>T	c.(595-597)CCC>CCT	p.P199P	PLUNC_uc002wyt.3_Silent_p.P199P|PLUNC_uc002wyu.3_Silent_p.P199P	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	199					innate immune response	extracellular region	lipid binding				0						GCCCCCTCCCCATTCAAGGTC	0.552													128	86					0	0	0.014410	0	0
ZNF341	84905	broad.mit.edu	37	20	32328812	32328812	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:32328812C>T	uc002wzy.2	+	2	156	c.136C>T	c.(136-138)CCA>TCA	p.P46S	ZNF341_uc002wzx.2_Missense_Mutation_p.P46S|ZNF341_uc010geq.2_Silent_p.S21S|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGCTATCCAGCCATTGGGTGA	0.572													11	45					0	0	0.010729	0	0
ASIP	434	broad.mit.edu	37	20	32850692	32850692	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:32850692C>T	uc002xah.1	+	2	225	c.215C>T	c.(214-216)TCT>TTT	p.S72F		NM_001672	NP_001663	P42127	ASIP_HUMAN	agouti signaling protein precursor	72	Arg/Lys-rich (basic).				cell-cell signaling|generation of precursor metabolites and energy|hormone-mediated signaling pathway	extracellular space				central_nervous_system(1)	1						AAGAAAAGATCTTCTAAGGTA	0.463													50	19					0	0	0.014410	0	0
EDEM2	55741	broad.mit.edu	37	20	33703686	33703686	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:33703686G>A	uc002xbo.2	-	11	1387	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	EDEM2_uc010zus.1_Silent_p.F208F|EDEM2_uc002xbq.2_Silent_p.F392F|EDEM2_uc010zut.1_Silent_p.F388F|EDEM2_uc002xbp.2_Silent_p.F277F|EDEM2_uc002xbn.2_Silent_p.F277F|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Silent_p.F153F	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	429					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TCTCGGCCAGGAAGAACGACT	0.517													38	14					0	0	0.009718	0	0
FAM83C	128876	broad.mit.edu	37	20	33875396	33875396	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:33875396G>A	uc010zux.1	-	4	1304	c.1186C>T	c.(1186-1188)CGC>TGC	p.R396C	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	396										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GACAGTTGGCGATGTAGGGAG	0.642													6	33					0	0	0.001168	0	0
C20orf117	140710	broad.mit.edu	37	20	35467683	35467683	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:35467683G>A	uc002xgd.1	-	2	462	c.135C>T	c.(133-135)CTC>CTT	p.L45L		NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	45											0		Myeloproliferative disorder(115;0.00874)				GGGCGGCACGGAGACTGCGGC	0.662													75	40					0	0	0.014410	0	0
RBL1	5933	broad.mit.edu	37	20	35683995	35683995	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:35683995C>T	uc002xgi.2	-	11	1507	c.1428G>A	c.(1426-1428)ATG>ATA	p.M476I	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.M476I	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	476	Domain A.|Pocket; binds T and E1A.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				TTTCCTGAACCATTACAGTCT	0.388													17	25					0	0	0.006122	0	0
PTPRT	11122	broad.mit.edu	37	20	40710649	40710649	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:40710649C>T	uc002xkg.2	-	30	4329	c.4145G>A	c.(4144-4146)GGA>GAA	p.G1382E	PTPRT_uc010ggj.2_Missense_Mutation_p.G1401E|PTPRT_uc010ggi.2_Missense_Mutation_p.G585E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1382	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACTACGGCCTCCCCCATTTCT	0.493													11	63					0	0	0.010729	0	0
TOX2	84969	broad.mit.edu	37	20	42682962	42682962	+	Silent	SNP	A	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:42682962A>C	uc002xlf.3	+	5	719	c.702A>C	c.(700-702)TCA>TCC	p.S234S	TOX2_uc010ggo.2_Silent_p.S225S|TOX2_uc002xle.3_Silent_p.S183S|TOX2_uc010ggp.2_Silent_p.S183S|TOX2_uc002xlg.2_Silent_p.S183S|TOX2_uc010zwk.1_Silent_p.S103S	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	234	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AGAGACCTTCAGCCGACCCAG	0.537													7	3					0	0	0.006214	0	0
TOX2	84969	broad.mit.edu	37	20	42694485	42694485	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:42694485G>T	uc002xlf.3	+	6	1057	c.1040G>T	c.(1039-1041)CGC>CTC	p.R347L	TOX2_uc010ggo.2_Missense_Mutation_p.R365L|TOX2_uc002xle.3_Missense_Mutation_p.R323L|TOX2_uc010ggp.2_Missense_Mutation_p.R323L|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Missense_Mutation_p.R243L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	347					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CAGGCCTTCCGCAGTGGGGCC	0.697													19	65					1.28384e-07	1.46657e-07	0.012319	1	0
PIGT	51604	broad.mit.edu	37	20	44049272	44049272	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:44049272C>T	uc002xoh.1	+	8	1045	c.972C>T	c.(970-972)GCC>GCT	p.A324A	PIGT_uc010ghb.1_Silent_p.A314A|PIGT_uc010zwt.1_RNA|PIGT_uc010ghd.1_Silent_p.A231A|PIGT_uc010ghc.1_RNA|PIGT_uc010ghe.1_Silent_p.A287A|PIGT_uc010ghf.1_Silent_p.A277A|PIGT_uc002xoj.1_Silent_p.A324A|PIGT_uc002xok.1_Silent_p.A289A|PIGT_uc010zwu.1_Silent_p.A62A|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Silent_p.A62A|PIGT_uc010zww.1_Silent_p.A268A|PIGT_uc010zwx.1_Silent_p.A159A|PIGT_uc010zwy.1_Silent_p.A222A|PIGT_uc010zwz.1_Silent_p.A62A|PIGT_uc010zxa.1_Silent_p.A162A|PIGT_uc002xol.1_Silent_p.A180A|PIGT_uc010zxb.1_5'UTR|PIGT_uc002xom.1_5'Flank	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	324	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				TTGACACCGCCATGATCAACA	0.537													33	19					0	0	0.012213	0	0
TNNC2	7125	broad.mit.edu	37	20	44453461	44453461	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:44453461C>T	uc002xpr.2	-	2	82	c.16G>A	c.(16-18)GCT>ACT	p.A6T		NM_003279	NP_003270	P02585	TNNC2_HUMAN	fast skeletal muscle troponin C	6					muscle filament sliding|regulation of muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(115;0.0122)				CTGGCCTCAGCCTGCTGGTCC	0.602													20	103					0	0	0.003954	0	0
PLTP	5360	broad.mit.edu	37	20	44538677	44538677	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:44538677G>A	uc002xqn.1	-	4	313	c.233C>T	c.(232-234)TCC>TTC	p.S78F	PLTP_uc002xql.1_5'UTR|PLTP_uc002xqm.1_Missense_Mutation_p.S98F|PLTP_uc002xqo.1_Missense_Mutation_p.S78F|PLTP_uc002xqp.1_Missense_Mutation_p.S78F|PLTP_uc002xqq.1_Missense_Mutation_p.S47F|PLTP_uc010zxj.1_Intron|PLTP_uc010ghj.1_Missense_Mutation_p.S78F	NM_006227	NP_006218	P55058	PLTP_HUMAN	phospholipid transfer protein isoform a	78					cellular lipid metabolic process|lipid transport	extracellular region	lipid binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				ATCGAGCTCGGAAGATGTCAG	0.547													31	14					0	0	0.007291	0	0
ZNF335	63925	broad.mit.edu	37	20	44581340	44581340	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:44581340G>A	uc002xqw.2	-	19	2834	c.2711C>T	c.(2710-2712)CCC>CTC	p.P904L	ZNF335_uc002xqv.2_Missense_Mutation_p.P16L|ZNF335_uc010zxk.1_Missense_Mutation_p.P749L	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	904					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				CTCTCCTGCGGGCTCCTCGCT	0.572													10	58					0	0	0.008291	0	0
NCOA5	57727	broad.mit.edu	37	20	44695779	44695779	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:44695779G>A	uc002xrd.2	-	4	1072	c.544C>T	c.(544-546)CGT>TGT	p.R182C	NCOA5_uc002xrc.2_Missense_Mutation_p.R70C|NCOA5_uc002xre.2_Missense_Mutation_p.R182C	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				AAATATTGACGATAAAGCTCT	0.433													12	64					0	0	0.016723	0	0
EYA2	2139	broad.mit.edu	37	20	45725732	45725732	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:45725732C>T	uc002xsm.2	+	9	1187	c.813C>T	c.(811-813)TTC>TTT	p.F271F	EYA2_uc010ghp.2_Silent_p.F271F|EYA2_uc002xsn.2_Silent_p.F276F|EYA2_uc002xso.2_Silent_p.F271F|EYA2_uc002xsp.2_Silent_p.F271F|EYA2_uc002xsq.2_Silent_p.F271F	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	271					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				AGCGTGTGTTCGTGTGGGACT	0.423													46	38					0	0	0.014410	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47612404	47612404	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:47612404T>C	uc002xtx.3	+	23	3358	c.3206T>C	c.(3205-3207)GTT>GCT	p.V1069A	ARFGEF2_uc010zyf.1_Missense_Mutation_p.V362A	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1069					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CAGAGTGTGGTTGTAGCTGTG	0.463													3	114					0	0	0.014758	0	0
STAU1	6780	broad.mit.edu	37	20	47733721	47733721	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:47733721G>A	uc002xud.2	-	12	1985	c.1574C>T	c.(1573-1575)TCT>TTT	p.S525F	STAU1_uc002xua.2_Missense_Mutation_p.S444F|STAU1_uc002xub.2_Missense_Mutation_p.S450F|STAU1_uc002xuc.2_Missense_Mutation_p.S444F|STAU1_uc002xue.2_Missense_Mutation_p.S444F|STAU1_uc002xuf.2_Missense_Mutation_p.S450F|STAU1_uc002xug.2_Missense_Mutation_p.S525F	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	525						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			AGGTGGCTGAGAGGAGCAATT	0.473													41	16					0	0	0.009718	0	0
ATP9A	10079	broad.mit.edu	37	20	50235535	50235535	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:50235535C>T	uc002xwg.1	-	20	2163	c.2163G>A	c.(2161-2163)AGG>AGA	p.R721R	ATP9A_uc010gih.1_Silent_p.R585R|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	721	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						AATCATGCTTCCTGCGGAAGG	0.612													40	10					0	0	0.011902	0	0
ZFP64	55734	broad.mit.edu	37	20	50701121	50701121	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:50701121G>A	uc002xwk.2	-	9	2262	c.1913C>T	c.(1912-1914)CCC>CTC	p.P638L	ZFP64_uc002xwj.2_Missense_Mutation_p.P419L	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	483					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGGCTCTAGGGGAGCCTCGAG	0.622													9	34					0	0	0.006214	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870578	51870578	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:51870578C>T	uc002xwo.2	+	2	1537	c.581C>T	c.(580-582)TCG>TTG	p.S194L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	194					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTGTTCAGCTCGGTGCAGTTG	0.562													28	16					0	0	0.006320	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871590	51871590	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:51871590C>T	uc002xwo.2	+	2	2549	c.1593C>T	c.(1591-1593)GCC>GCT	p.A531A		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	531					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCAACAAAGCCCAAAACGGGG	0.542													8	52					0	0	0.004482	0	0
BCAS1	8537	broad.mit.edu	37	20	52645262	52645262	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:52645262T>A	uc002xws.2	-	4	730	c.392A>T	c.(391-393)AAC>ATC	p.N131I	BCAS1_uc010zzb.1_Missense_Mutation_p.N34I|BCAS1_uc010gim.2_Missense_Mutation_p.N34I|BCAS1_uc002xwt.2_Missense_Mutation_p.N131I|BCAS1_uc010gil.1_Missense_Mutation_p.N131I|BCAS1_uc010zzc.1_Missense_Mutation_p.N34I	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	131						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TGGGTCTTTGTTCGCTGGAGC	0.582													7	45					0	0	0.003080	0	0
CASS4	57091	broad.mit.edu	37	20	55027160	55027160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:55027160C>T	uc002xxp.2	+	6	1153	c.928C>T	c.(928-930)CCT>TCT	p.P310S	CASS4_uc002xxq.3_Missense_Mutation_p.P310S|CASS4_uc002xxr.2_Missense_Mutation_p.P310S|CASS4_uc010zze.1_Missense_Mutation_p.P256S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	310					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						TCCAGAAATTCCTTCTTATGG	0.463													25	15					0	0	0.018920	0	0
Unknown	0	broad.mit.edu	37	20	56063612	56063612	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:56063612C>T	uc010zzl.1	-	1	472	c.472G>A	c.(472-474)GAT>AAT	p.D158N		NM_001008735	NP_001008735			high-mobility group box 1-like 1																		GCAGCAATATCCTTTTCGTAT	0.378													14	11					0	0	0.002450	0	0
CTCFL	140690	broad.mit.edu	37	20	56078497	56078497	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:56078497C>T	uc010gix.1	-	9	2497	c.1835G>A	c.(1834-1836)GGA>GAA	p.G612E	CTCFL_uc010giw.1_Missense_Mutation_p.G612E|CTCFL_uc002xym.2_Missense_Mutation_p.G612E|CTCFL_uc010giz.1_Missense_Mutation_p.G200E|CTCFL_uc010giy.1_Missense_Mutation_p.G282E|CTCFL_uc010gja.1_Missense_Mutation_p.G562E|CTCFL_uc010gjb.1_Missense_Mutation_p.G612E|CTCFL_uc010gjc.1_Missense_Mutation_p.G612E|CTCFL_uc010gjd.1_Missense_Mutation_p.G612E|CTCFL_uc010gje.2_Missense_Mutation_p.G612E|CTCFL_uc010gjf.2_Missense_Mutation_p.G407E|CTCFL_uc010gjg.2_Missense_Mutation_p.G344E|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	612					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			AGTACCGTCTCCGTTCGCGGC	0.507													14	88					0	0	0.004007	0	0
CDH26	60437	broad.mit.edu	37	20	58560113	58560113	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:58560113T>C	uc002ybe.2	+	7	1066	c.766T>C	c.(766-768)TCA>CCA	p.S256P	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	256	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			ACCGTCACTGTCATCCACGAC	0.542													29	17					0	0	0.008361	0	0
CDH4	1002	broad.mit.edu	37	20	60485517	60485517	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:60485517G>A	uc002ybn.1	+	9	1242	c.1228G>A	c.(1228-1230)GTC>ATC	p.V410I	CDH4_uc002ybp.1_Missense_Mutation_p.V336I	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	410	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGAGACCGTGGTCGCAAACCT	0.493													7	26					0	0	0.004482	0	0
CDH4	1002	broad.mit.edu	37	20	60503400	60503400	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:60503400C>T	uc002ybn.1	+	12	1938	c.1924C>T	c.(1924-1926)CCC>TCC	p.P642S	CDH4_uc002ybp.1_Missense_Mutation_p.P568S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	642	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			TGACGTCGACCCCAACATCGG	0.652													58	37					0	0	0.014410	0	0
DIDO1	11083	broad.mit.edu	37	20	61511017	61511017	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr20:61511017C>T	uc002ydr.1	-	16	6555	c.6291G>A	c.(6289-6291)GAG>GAA	p.E2097E	DIDO1_uc002yds.1_Silent_p.E2097E	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2097					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CCAGCGGCTTCTCTTTGGGCC	0.542													110	69					0	0	0.014410	0	0
TPTE	7179	broad.mit.edu	37	21	10921986	10921986	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:10921986C>T	uc002yip.1	-	18	1405	c.1037G>A	c.(1036-1038)GGA>GAA	p.G346E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G328E|TPTE_uc002yir.1_Missense_Mutation_p.G308E|TPTE_uc010gkv.1_Missense_Mutation_p.G208E	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	346	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AACCATAGTTCCTGTTCTATC	0.323													5	37					0	0	0.001168	0	0
TPTE	7179	broad.mit.edu	37	21	10934106	10934106	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:10934106C>T	uc002yip.1	-	16	1239	c.871G>A	c.(871-873)GAT>AAT	p.D291N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.D273N|TPTE_uc002yir.1_Missense_Mutation_p.D253N|TPTE_uc010gkv.1_Missense_Mutation_p.D153N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	291	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.V291I(1)		ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGCTTAGGATCGTAAGCTCTT	0.308													14	87					0	0	0.002450	0	0
TPTE	7179	broad.mit.edu	37	21	10941939	10941939	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:10941939C>T	uc002yip.1	-	14	1132	c.764G>A	c.(763-765)GGA>GAA	p.G255E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G237E|TPTE_uc002yir.1_Missense_Mutation_p.G217E|TPTE_uc010gkv.1_Missense_Mutation_p.G117E	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	255	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGACTGCCTTCCAGAAGATGG	0.289													18	81					0	0	0.012319	0	0
TPTE	7179	broad.mit.edu	37	21	10996093	10996093	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:10996093C>T	uc002yis.1	-	12		c.2093G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTTGGTTTTCCCTTGCCCAG	0.383													12	24					0	0	0.010729	0	0
SAMSN1	64092	broad.mit.edu	37	21	15882643	15882643	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:15882643G>A	uc002yju.1	-	5	631	c.549C>T	c.(547-549)TCC>TCT	p.S183S	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.S251S	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	183	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TGATTTTGAGGGAGTCAGTGT	0.478													25	39					0	0	0.005443	0	0
CHODL	140578	broad.mit.edu	37	21	19629303	19629303	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:19629303G>A	uc002ykv.2	+	3	797	c.406G>A	c.(406-408)GAA>AAA	p.E136K	CHODL_uc002ykr.2_Missense_Mutation_p.E95K|CHODL_uc002yks.2_Missense_Mutation_p.E95K|CHODL_uc002ykt.2_Missense_Mutation_p.E95K|CHODL_uc002yku.2_Missense_Mutation_p.E95K	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	136	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding	p.E136*(1)		upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		GTACACAGATGAACCTTCCTG	0.463													5	34					0	0	0.001168	0	0
JAM2	58494	broad.mit.edu	37	21	27071113	27071113	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:27071113C>T	uc002ylp.1	+	5	1064	c.519C>T	c.(517-519)ATC>ATT	p.I173I	JAM2_uc011ace.1_Silent_p.I173I|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Silent_p.I137I|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Silent_p.I173I|JAM2_uc010gli.1_Silent_p.I173I	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	173	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						AGGATGGCATCCGTTTGCTAG	0.438													7	29					0	0	0.004482	0	0
DSCAM	1826	broad.mit.edu	37	21	41446981	41446981	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:41446981C>T	uc002yyq.1	-	27	5323	c.4871G>A	c.(4870-4872)AGG>AAG	p.R1624K	DSCAM_uc002yyr.1_Splice_Site	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1624	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTCTTTAGCCTCTGCTCCCG	0.617													3	17					0	0	0.004672	0	0
DSCAM	1826	broad.mit.edu	37	21	42064790	42064790	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:42064790C>T	uc002yyq.1	-	3	906	c.454G>A	c.(454-456)GAG>AAG	p.E152K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	152	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATGTACGCCTCCACCGAGGAG	0.537													23	33					0	0	0.014323	0	0
RIPK4	54101	broad.mit.edu	37	21	43171321	43171321	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:43171321A>G	uc002yzn.1	-	3	607	c.559T>C	c.(559-561)TAC>CAC	p.Y187H		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	187						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						GGAGGGAGGTAGGCGATTGTG	0.582													25	27					0	0	0.003954	0	0
UMODL1	89766	broad.mit.edu	37	21	43531690	43531690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:43531690G>A	uc002zaf.1	+	12	1974	c.1974G>A	c.(1972-1974)TGG>TGA	p.W658*	UMODL1_uc002zad.1_Nonsense_Mutation_p.W586*|UMODL1_uc002zae.1_Nonsense_Mutation_p.W714*|UMODL1_uc002zag.1_Nonsense_Mutation_p.W786*	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	658	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						ACTTCCTGTGGCATGCCACCC	0.612													7	23					0	0	0.001984	0	0
RSPH1	89765	broad.mit.edu	37	21	43913094	43913094	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:43913094G>A	uc002zbg.2	-	2	255	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	50	MORN 2.				meiosis	cytosol|nucleus				ovary(1)	1						GTCTTTTACCGAATTCGTAGC	0.507													55	52					0	0	0.014410	0	0
TRPM2	7226	broad.mit.edu	37	21	45786768	45786768	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:45786768G>A	uc002zet.1	+	5	768	c.555G>A	c.(553-555)CGG>CGA	p.R185R	TRPM2_uc002zeu.1_Silent_p.R185R|TRPM2_uc002zew.1_Silent_p.R185R|TRPM2_uc010gpt.1_Silent_p.R185R|TRPM2_uc002zex.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	185	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGAAGCCGCGGCTGAAGAGCA	0.632													6	16					0	0	0.001984	0	0
TRPM2	7226	broad.mit.edu	37	21	45786782	45786782	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:45786782T>A	uc002zet.1	+	5	782	c.569T>A	c.(568-570)TTC>TAC	p.F190Y	TRPM2_uc002zeu.1_Missense_Mutation_p.F190Y|TRPM2_uc002zew.1_Missense_Mutation_p.F190Y|TRPM2_uc010gpt.1_Missense_Mutation_p.F190Y|TRPM2_uc002zex.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	190	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGAGCATTTTCCGCAGAGGC	0.642													5	14					0	0	0.001168	0	0
LRRC3	81543	broad.mit.edu	37	21	45876823	45876823	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:45876823C>T	uc002zfa.2	+	2	589	c.296C>T	c.(295-297)GCC>GTC	p.A99V		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	99	LRR 2.					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCTCACAACGCCATCGAGGCC	0.667													7	29					0	0	0.003080	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020845	46020845	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:46020845C>T	uc002zfn.3	+	2	334	c.309C>T	c.(307-309)TCC>TCT	p.S103S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	108	30 X 5 AA repeats of C-C-X(3).|5.					keratin filament					0						GTGCCTCCTCCCCCTGCCAGC	0.637													8	26					0	0	0.010729	0	0
COL6A2	1292	broad.mit.edu	37	21	47532471	47532471	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:47532471A>G	uc002zia.1	+	3	776	c.694A>G	c.(694-696)AAC>GAC	p.N232D	COL6A2_uc002zhy.1_Missense_Mutation_p.N232D|COL6A2_uc002zhz.1_Missense_Mutation_p.N232D|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	232	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGACACCATCAACCGCATCAT	0.682													4	14					0	0	0.009096	0	0
FTCD	10841	broad.mit.edu	37	21	47574192	47574192	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr21:47574192C>T	uc002zif.2	-	2	153	c.109G>A	c.(109-111)GAT>AAT	p.D37N	FTCD_uc002zig.2_Missense_Mutation_p.D37N|FTCD_uc002zih.2_Missense_Mutation_p.D37N|FTCD_uc010gqf.2_Missense_Mutation_p.D37N|FTCD_uc010gqg.1_5'UTR	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	37	Formiminotransferase N-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	GCGTCCACATCCAGCAGCACG	0.672													6	12					0	0	0.001168	0	0
HIRA	7290	broad.mit.edu	37	22	19396072	19396072	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:19396072G>A	uc002zpf.1	-	3	365	c.145C>T	c.(145-147)CTC>TTC	p.L49F	HIRA_uc011agx.1_5'UTR|HIRA_uc010grn.1_Missense_Mutation_p.L49F|HIRA_uc010gro.1_Missense_Mutation_p.L5F|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	49	WD 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					TCCTCCTGGAGGACTGGAGAC	0.453													25	40					0	0	0.006320	0	0
ARVCF	421	broad.mit.edu	37	22	19960554	19960554	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:19960554G>A	uc002zqz.2	-	15	2715	c.2444C>T	c.(2443-2445)TCG>TTG	p.S815L	ARVCF_uc002zqy.2_Missense_Mutation_p.S331L	NM_001670	NP_001661	O00192	ARVC_HUMAN	armadillo repeat protein	815	ARM 10.				cell adhesion|multicellular organismal development		protein binding			liver(1)	1	Colorectal(54;0.0993)					TTCGCGTACCGATTGGCTGTG	0.687													34	34					0	0	0.012213	0	0
PI4KA	5297	broad.mit.edu	37	22	21173974	21173974	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:21173974C>T	uc002zsz.3	-	6	801	c.570G>A	c.(568-570)GAG>GAA	p.E190E	PI4KA_uc010gsq.1_Silent_p.E248E	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	190					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TCAGGGTACCCTCCTGACAGA	0.552													55	45					0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	23011173	23011173	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:23011173G>A	uc011aim.1	+	121		c.7859G>A								Parts of antibodies, mostly variable regions.												0						ATCCCTGAGCGATTCTCCGGC	0.567													10	14					0	0	0.006214	0	0
KREMEN1	83999	broad.mit.edu	37	22	29534816	29534816	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:29534816T>C	uc011akm.1	+	7	1182	c.1169T>C	c.(1168-1170)GTT>GCT	p.V390A	KREMEN1_uc003ael.2_Intron|KREMEN1_uc011akn.1_Missense_Mutation_p.V273A	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	388	Extracellular (Potential).				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						AGCCACAGAGTTGAAGGTAGC	0.527													16	33					0	0	0.003163	0	0
TCN2	6948	broad.mit.edu	37	22	31003345	31003346	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:31003345_31003346CC>TT	uc003aip.1	+	1	185_186	c.27_28CC>TT	c.(25-30)TTCCTT>TTTTTT	p.L10F	PES1_uc003ain.1_5'Flank|PES1_uc003aio.1_5'Flank|TCN2_uc003aiq.1_Missense_Mutation_p.L10F|TCN2_uc003air.1_Missense_Mutation_p.L10F	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	10					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CCTTCCTCTTCCTTCTGGGGGT	0.614													26	62					0	0	0.004672	0	0
SFI1	9814	broad.mit.edu	37	22	31979912	31979912	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:31979912G>A	uc003ale.2	+	13	1693	c.1300G>A	c.(1300-1302)GAA>AAA	p.E434K	SFI1_uc003ald.1_Missense_Mutation_p.E410K|SFI1_uc003alf.2_Missense_Mutation_p.E403K|SFI1_uc003alg.2_Missense_Mutation_p.E352K|SFI1_uc011alp.1_Missense_Mutation_p.E352K|SFI1_uc011alq.1_Missense_Mutation_p.E379K|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	434					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GCAGAAAAAGGAAAGAGAGCT	0.507													53	112					0	0	0.014410	0	0
CARD10	29775	broad.mit.edu	37	22	37914095	37914095	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:37914095G>C	uc003asx.1	-	2	259	c.256C>G	c.(256-258)CGC>GGC	p.R86G	CARD10_uc003ast.1_RNA|CARD10_uc003asy.1_Missense_Mutation_p.R86G	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	86	CARD.				activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CCACGGCAGCGCAAGATGTCC	0.642													21	21					0	0	0.003954	0	0
GCAT	23464	broad.mit.edu	37	22	38212689	38212689	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:38212689C>T	uc003atz.2	+	9	1244	c.1224C>T	c.(1222-1224)TTC>TTT	p.F408F	GCAT_uc003aua.1_Silent_p.F434F	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	408					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	TGGAGGCCTTCGTGGAAGTGG	0.622													24	36					0	0	0.006320	0	0
SLC16A8	23539	broad.mit.edu	37	22	38474640	38474640	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:38474640C>T	uc003auu.2	-	5	1400	c.1270G>A	c.(1270-1272)GGG>AGG	p.G424R		NM_013356	NP_037488	O95907	MOT3_HUMAN	solute carrier family 16, member 8	424	Helical; (Potential).				blood coagulation|leukocyte migration|pyruvate metabolic process	integral to plasma membrane|membrane fraction	lactate transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity				0	Melanoma(58;0.045)				Pyruvic acid(DB00119)	ATGAAGACCCCAGCCAGGGCC	0.627													16	63					0	0	0.006122	0	0
DDX17	10521	broad.mit.edu	37	22	38891816	38891816	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:38891816G>A	uc003avy.3	-	6	968	c.865C>T	c.(865-867)CGA>TGA	p.R289*	DDX17_uc003avx.3_Nonsense_Mutation_p.R289*|DDX17_uc011anu.1_Nonsense_Mutation_p.R202*	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	210	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TCCAAGTCTCGAATCTGGGGA	0.398													38	40					0	0	0.004878	0	0
NPTXR	23467	broad.mit.edu	37	22	39219155	39219155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:39219155G>A	uc003awk.2	-	4	1365	c.1211C>T	c.(1210-1212)TCC>TTC	p.S404F		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	404	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					GTTCTCACCGGAGCCCTGCAG	0.602													23	47					0	0	0.005443	0	0
CACNA1I	8911	broad.mit.edu	37	22	40078631	40078631	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:40078631C>T	uc003ayc.2	+	35	5795	c.5795C>T	c.(5794-5796)CCT>CTT	p.P1932L	CACNA1I_uc003ayd.2_Missense_Mutation_p.P1897L|CACNA1I_uc003aye.2_Missense_Mutation_p.P1847L|CACNA1I_uc003ayf.2_Missense_Mutation_p.P1812L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1932	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CCATTCAACCCTGTCCGGTCC	0.597													11	24					0	0	0.013537	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283601	40283601	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:40283601G>A	uc003ayg.2	-	2	403	c.152C>T	c.(151-153)TCA>TTA	p.S51L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	51	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CATAATCTCTGAGAGAGAAAT	0.418													30	46					0	0	0.013726	0	0
ACO2	50	broad.mit.edu	37	22	41913580	41913580	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:41913580C>T	uc003bac.2	+	7	907	c.885C>T	c.(883-885)TCC>TCT	p.S295S	ACO2_uc003bad.2_Silent_p.S320S	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	295					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						CCACCACTTCCGTGTTCCCTT	0.622											OREG0026588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	18					0	0	0.013537	0	0
TRMU	55687	broad.mit.edu	37	22	46748035	46748035	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:46748035C>T	uc003bhp.2	+	6	1033	c.669C>T	c.(667-669)TTC>TTT	p.F223F	TRMU_uc011arb.1_Silent_p.F223F|TRMU_uc003bhq.2_Silent_p.F5F|TRMU_uc003bhs.2_Silent_p.F223F|TRMU_uc003bhr.2_Silent_p.F109F|TRMU_uc003bht.2_Silent_p.F76F|TRMU_uc003bhu.2_Silent_p.F5F|TRMU_uc003bhv.2_Silent_p.F76F	NM_018006	NP_060476	O75648	MTU1_HUMAN	tRNA 5-methylaminomethyl-2-thiouridylate	223						mitochondrion	ATP binding|sulfurtransferase activity|tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity|tRNA binding			ovary(1)	1		Ovarian(80;0.00965)|Breast(42;0.0194)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00449)|LUAD - Lung adenocarcinoma(64;0.248)		GCATGTGTTTCATCGGGAAGA	0.567													63	160					0	0	0.014410	0	0
GRAMD4	23151	broad.mit.edu	37	22	47064595	47064596	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:47064595_47064596GG>AA	uc003bhx.2	+	11	979_980	c.940_941GG>AA	c.(940-942)GGG>AAG	p.G314K	GRAMD4_uc010had.2_Missense_Mutation_p.G253K	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	314					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		GAACCTTTTCGGGAAGATGGCT	0.47													43	102					0	0	0.004672	0	0
PIM3	415116	broad.mit.edu	37	22	50355388	50355388	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:50355388C>T	uc003bjb.2	+	4	998	c.545C>T	c.(544-546)TCC>TTC	p.S182F	PIM3_uc011arj.1_5'Flank	NM_001001852	NP_001001852	Q86V86	PIM3_HUMAN	serine/threonine protein kinase pim-3	182	Protein kinase.				cell cycle|negative regulation of apoptosis|regulation of mitotic cell cycle		ATP binding|protein binding|protein serine/threonine kinase activity				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.196)|LUAD - Lung adenocarcinoma(64;0.247)		GACCTGCGCTCCGGAGAGCTC	0.652													11	21					0	0	0.013537	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719037	50719037	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:50719037G>A	uc003bkv.3	-	25	4162	c.4056C>T	c.(4054-4056)TCC>TCT	p.S1352S	PLXNB2_uc003bkt.1_Silent_p.S144S|PLXNB2_uc003bku.1_Silent_p.S337S	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1352	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCGTCAGCAGGGACGCGAAGT	0.642													22	40					0	0	0.014323	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719043	50719043	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:50719043G>A	uc003bkv.3	-	25	4156	c.4050C>T	c.(4048-4050)TTC>TTT	p.F1350F	PLXNB2_uc003bkt.1_Silent_p.F142F|PLXNB2_uc003bku.1_Silent_p.F335F	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1350	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGGGACGCGAAGTAGACCT	0.642													22	37					0	0	0.014323	0	0
PLXNB2	23654	broad.mit.edu	37	22	50721182	50721182	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:50721182T>G	uc003bkv.3	-	18	3051	c.2945A>C	c.(2944-2946)AAC>ACC	p.N982T	PLXNB2_uc003bkt.1_5'Flank|PLXNB2_uc003bku.1_5'Flank	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	982	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGTACGGGGTTTTCGCGGTA	0.677													5	16					0	0	0.001984	0	0
CHL1	10752	broad.mit.edu	37	3	369855	369855	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:369855C>T	uc003bou.2	+	5	474	c.203C>T	c.(202-204)TCG>TTG	p.S68L	CHL1_uc003bot.2_Missense_Mutation_p.S68L|CHL1_uc003bow.1_Missense_Mutation_p.S68L|CHL1_uc011asi.1_Missense_Mutation_p.S68L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	68	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTTAGATTTTCGTGGACTAAG	0.338													28	21					0	0	0.008361	0	0
CNTN6	27255	broad.mit.edu	37	3	1444146	1444146	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:1444146G>A	uc003boz.2	+	22	3229	c.2962G>A	c.(2962-2964)GAA>AAA	p.E988K	CNTN6_uc011asj.1_Missense_Mutation_p.E916K|CNTN6_uc003bpa.2_Missense_Mutation_p.E988K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	988	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CAGCAGTGAGGAAATTAGGAT	0.398													12	10					0	0	0.010729	0	0
GRM7	2917	broad.mit.edu	37	3	7348259	7348259	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:7348259C>T	uc003bqm.2	+	4	1227	c.953C>T	c.(952-954)TCC>TTC	p.S318F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.S318F|GRM7_uc003bql.2_Missense_Mutation_p.S318F|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	318	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AGCTGGGGATCCAAAATAAAC	0.498													26	27					0	0	0.018920	0	0
ATP2B2	491	broad.mit.edu	37	3	10384469	10384469	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:10384469G>A	uc003bvt.2	-	19	3323	c.2884C>T	c.(2884-2886)CAG>TAG	p.Q962*	ATP2B2_uc003bvv.2_Nonsense_Mutation_p.Q917*|ATP2B2_uc003bvw.2_Nonsense_Mutation_p.Q917*|ATP2B2_uc010hdo.2_Nonsense_Mutation_p.Q667*	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	962	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGGCAAGCTGGTAGACAGCA	0.627													7	21					0	0	0.001984	0	0
ATP2B2	491	broad.mit.edu	37	3	10442734	10442734	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:10442734G>A	uc003bvt.2	-	5	1123	c.684C>T	c.(682-684)TTC>TTT	p.F228F	ATP2B2_uc003bvv.2_Silent_p.F228F|ATP2B2_uc003bvw.2_Silent_p.F228F|ATP2B2_uc010hdp.2_Silent_p.F228F|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	228	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGCCCTGGATGAAGAGGCCGT	0.577													17	6					0	0	0.004990	0	0
NUP210	23225	broad.mit.edu	37	3	13378289	13378289	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:13378289C>T	uc003bxv.1	-	27	3765	c.3682G>A	c.(3682-3684)GAG>AAG	p.E1228K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1228	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTACCTACCTCGTGGTGCCGC	0.647													20	15					0	0	0.007413	0	0
PLCL2	23228	broad.mit.edu	37	3	17053297	17053297	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:17053297A>G	uc011awc.1	+	5	2540	c.2435A>G	c.(2434-2436)AAC>AGC	p.N812S	PLCL2_uc011awd.1_Missense_Mutation_p.N694S	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	820	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TTTCAAATCAACCTGCCTGAA	0.443													14	49					0	0	0.003163	0	0
FBXL2	25827	broad.mit.edu	37	3	33400823	33400823	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:33400823C>T	uc003cfp.2	+	4	240	c.169C>T	c.(169-171)CTT>TTT	p.L57F	FBXL2_uc011axm.1_RNA|FBXL2_uc011axn.1_RNA|FBXL2_uc011axo.1_5'UTR|FBXL2_uc011axp.1_Intron|FBXL2_uc011axq.1_Intron|FBXL2_uc011axr.1_Intron|FBXL2_uc011axs.1_RNA	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2	57					interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						AAGAATAGATCTTTTTAACTT	0.378													11	13					0	0	0.013537	0	0
DCLK3	85443	broad.mit.edu	37	3	36759600	36759600	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:36759600G>A	uc003cgi.2	-	4	2145	c.1654C>T	c.(1654-1656)CCA>TCA	p.P552S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	552	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CTGCGGAATGGGGGAAAGCCA	0.557													14	109					0	0	0.002450	0	0
TRANK1	9881	broad.mit.edu	37	3	36897004	36897004	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:36897004G>A	uc003cgj.2	-	3	2729	c.2427C>T	c.(2425-2427)TCC>TCT	p.S809S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1359					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AACCTTTCTGGGACCTGATTT	0.473													14	87					0	0	0.016723	0	0
SCN5A	6331	broad.mit.edu	37	3	38646229	38646230	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:38646229_38646230GG>AC	uc003cio.2	-	11	1702_1703	c.1508_1509CC>GT	c.(1507-1509)CCC>CGT	p.P503R	SCN5A_uc003cin.2_Missense_Mutation_p.P503R|SCN5A_uc003cil.3_Missense_Mutation_p.P503R|SCN5A_uc010hhi.2_Missense_Mutation_p.P503R|SCN5A_uc010hhk.2_Missense_Mutation_p.P503R|SCN5A_uc011ayr.1_Missense_Mutation_p.P503R|SCN5A_uc010hhj.1_Missense_Mutation_p.P114R	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	503					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCATTGCTCTGGGACCATCTTC	0.535													9	8					0	0	0.004672	0	0
XIRP1	165904	broad.mit.edu	37	3	39228619	39228619	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:39228619C>T	uc003cjk.1	-	2	2539	c.2318G>A	c.(2317-2319)GGG>GAG	p.G773E	XIRP1_uc003cji.2_Missense_Mutation_p.G773E|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	773							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCGCAGGGTCCCCTCAGCTGC	0.627													20	16					0	0	0.014323	0	0
VIPR1	7433	broad.mit.edu	37	3	42576497	42576497	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:42576497C>T	uc003clf.2	+	11	1165	c.1041C>T	c.(1039-1041)ATC>ATT	p.I347I	VIPR1_uc011azl.1_Silent_p.I299I|VIPR1_uc011azm.1_Silent_p.I137I|VIPR1_uc011azn.1_Silent_p.I320I|VIPR1_uc003clg.2_5'UTR	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	347	Helical; Name=6; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TCCTGCTGATCCCCCTGTTTG	0.527													7	41					0	0	0.001984	0	0
KIF15	56992	broad.mit.edu	37	3	44881882	44881882	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:44881882G>A	uc003cnx.3	+	28	3503	c.3354G>A	c.(3352-3354)AAG>AAA	p.K1118K	KIF15_uc010hiq.2_Silent_p.K1021K|KIF15_uc010hir.2_Silent_p.K166K	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1118	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AACAGAAGAAGAATGAATATA	0.368													25	15					0	0	0.006320	0	0
ZDHHC3	51304	broad.mit.edu	37	3	45000901	45000901	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:45000901G>A	uc003cod.2	-	2	302	c.28C>T	c.(28-30)CGA>TGA	p.R10*	ZDHHC3_uc003cog.2_Nonsense_Mutation_p.R10*|ZDHHC3_uc011bad.1_Nonsense_Mutation_p.R10*	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	10	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		TCAATGTTTCGGAAGTGGTGG	0.502													8	73					0	0	0.004482	0	0
DHX30	22907	broad.mit.edu	37	3	47887312	47887312	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:47887312C>T	uc003cru.2	+	10	1488	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	DHX30_uc003crt.2_Silent_p.I315I|DHX30_uc010hjr.1_Silent_p.I382I	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	354						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		CCGAGCCCATCCTCCGCAAGA	0.592													6	26					0	0	0.001984	0	0
CELSR3	1951	broad.mit.edu	37	3	48699999	48699999	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:48699999G>A	uc003cul.2	-	1	350	c.69C>T	c.(67-69)CTC>CTT	p.L23L	CELSR3_uc003cuf.1_Intron	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	23					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACAAAGAGAGGAGAAGGAGCA	0.473													5	10					0	0	0.014758	0	0
CCDC36	339834	broad.mit.edu	37	3	49274047	49274047	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:49274047C>T	uc003cwk.2	+	5	510	c.123C>T	c.(121-123)TTC>TTT	p.F41F	CCDC36_uc003cwl.3_Silent_p.F41F|CCDC36_uc011bck.1_Silent_p.F41F|CCDC36_uc010hkt.2_RNA	NM_178173	NP_835467	Q8IYA8	CCD36_HUMAN	coiled-coil domain containing 36	41										ovary(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(193;9.11e-05)|Kidney(197;0.00248)|KIRC - Kidney renal clear cell carcinoma(197;0.00262)		ATTCCCAGTTCCTCTTTGGAT	0.378													4	29					0	0	0.009096	0	0
GNAI2	2771	broad.mit.edu	37	3	50293647	50293647	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:50293647T>A	uc003cyq.1	+	5	609	c.488T>A	c.(487-489)ATT>AAT	p.I163N	GNAI2_uc003cyo.1_Missense_Mutation_p.I147N|GNAI2_uc003cyp.1_Missense_Mutation_p.I147N|GNAI2_uc010hlg.1_Missense_Mutation_p.I82N|GNAI2_uc011bdn.1_Missense_Mutation_p.I126N|GNAI2_uc003cyr.1_Missense_Mutation_p.I82N	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	163					adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		CTGGAGCGTATTGCACAGAGT	0.602													8	18					0	0	0.003080	0	0
GNAI2	2771	broad.mit.edu	37	3	50293650	50293650	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:50293650C>T	uc003cyq.1	+	5	612	c.491C>T	c.(490-492)GCA>GTA	p.A164V	GNAI2_uc003cyo.1_Missense_Mutation_p.A148V|GNAI2_uc003cyp.1_Missense_Mutation_p.A148V|GNAI2_uc010hlg.1_Missense_Mutation_p.A83V|GNAI2_uc011bdn.1_Missense_Mutation_p.A127V|GNAI2_uc003cyr.1_Missense_Mutation_p.A83V	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	164					adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		GAGCGTATTGCACAGAGTGAC	0.597													8	18					0	0	0.003080	0	0
ITIH3	3699	broad.mit.edu	37	3	52831138	52831138	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:52831138T>G	uc003dfv.2	+	5	440	c.404T>G	c.(403-405)TTG>TGG	p.L135W	ITIH3_uc011bek.1_Missense_Mutation_p.L135W	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	135	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGGAGGAAGTTGGAGAAGTTC	0.602													5	6					0	0	0.001168	0	0
CACNA1D	776	broad.mit.edu	37	3	53757981	53757981	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:53757981G>A	uc003dgv.3	+	14	2218	c.2055G>A	c.(2053-2055)CGG>CGA	p.R685R	CACNA1D_uc003dgu.3_Silent_p.R705R|CACNA1D_uc003dgy.3_Silent_p.R685R|CACNA1D_uc003dgw.3_Silent_p.R352R	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	685	Extracellular (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	AAACCAAGCGGAGCACCTTTG	0.473													30	17					0	0	0.015359	0	0
FAM3D	131177	broad.mit.edu	37	3	58622068	58622068	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:58622068C>T	uc003dkq.2	-	9	835	c.538G>A	c.(538-540)GTC>ATC	p.V180I		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	180					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CCTATGAAGACCCAGCTGTCC	0.547													19	22					0	0	0.008871	0	0
CADPS	8618	broad.mit.edu	37	3	62423808	62423808	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:62423808C>T	uc003dll.2	-	28	4108	c.3748G>A	c.(3748-3750)GAG>AAG	p.E1250K	CADPS_uc003dlj.1_Missense_Mutation_p.E205K|CADPS_uc003dlk.1_Missense_Mutation_p.E698K|CADPS_uc003dlm.2_Missense_Mutation_p.E1211K|CADPS_uc003dln.2_Missense_Mutation_p.E1171K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1250	Mediates targeting and association with DCVs (By similarity).			E -> G (in Ref. 1; AAM61861 and 5; CAD38751).	exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TACATCTCCTCATTGACCTTA	0.453													8	31					0	0	0.003080	0	0
GPR27	2850	broad.mit.edu	37	3	71804103	71804103	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:71804103C>T	uc011bge.1	+	1	903	c.903C>T	c.(901-903)GTC>GTT	p.V301V	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'Flank	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	301	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		GGCCCTACGTCGTGGCCAGCT	0.642													5	26					0	0	0.001168	0	0
SHQ1	55164	broad.mit.edu	37	3	72891553	72891553	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:72891553C>T	uc003dpf.2	-	3	316	c.209G>A	c.(208-210)GGA>GAA	p.G70E	SHQ1_uc010hod.2_5'UTR	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	70	CS.				ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		GGTAAAAATTCCTTAAAGATA	0.274													4	25					0	0	0.009096	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433775	73433775	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:73433775C>T	uc003dpl.1	-	10	2038	c.1942G>A	c.(1942-1944)GAG>AAG	p.E648K	PDZRN3_uc011bgh.1_Missense_Mutation_p.E305K|PDZRN3_uc010hoe.1_Missense_Mutation_p.E346K|PDZRN3_uc011bgf.1_Missense_Mutation_p.E365K|PDZRN3_uc011bgg.1_Missense_Mutation_p.E368K	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	648							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TCCAGGAGCTCGCGGAAGCGC	0.657													35	33					0	0	0.013726	0	0
CADM2	253559	broad.mit.edu	37	3	85984998	85984998	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:85984998G>A	uc003dqj.2	+	6	1381	c.755G>A	c.(754-756)GGA>GAA	p.G252E	CADM2_uc003dqk.2_Missense_Mutation_p.G261E|CADM2_uc003dql.2_Missense_Mutation_p.G254E	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	252	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GAATCCAAAGGAAAACCACTG	0.318													18	71					0	0	0.007413	0	0
EPHA6	285220	broad.mit.edu	37	3	96706639	96706639	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:96706639C>T	uc010how.1	+	3	959	c.916C>T	c.(916-918)CGT>TGT	p.R306C	EPHA6_uc003drp.1_Missense_Mutation_p.R306C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	211	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CTTCACTGTTCGTAACTTGGC	0.458													99	88					0	0	0.014410	0	0
GPR128	84873	broad.mit.edu	37	3	100373862	100373862	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:100373862C>T	uc003duc.2	+	12	1831	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	GPR128_uc011bhc.1_Silent_p.I222I|GPR128_uc003dud.2_Silent_p.I44I	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	521	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						CCATTAACATCCCGAATCCCA	0.428													44	29					0	0	0.014410	0	0
GPR128	84873	broad.mit.edu	37	3	100387893	100387893	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:100387893G>A	uc003duc.2	+	15	2348	c.2080G>A	c.(2080-2082)GAT>AAT	p.D694N	GPR128_uc011bhc.1_Missense_Mutation_p.D395N|GPR128_uc003dud.2_Missense_Mutation_p.D217N	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	694	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						GCTAGTTAATGATGATAGCAT	0.398													17	29					0	0	0.004990	0	0
RETNLB	84666	broad.mit.edu	37	3	108475946	108475946	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:108475946G>A	uc003dxh.2	-	1	185	c.87C>T	c.(85-87)TCC>TCT	p.S29S		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	29					cell proliferation	extracellular region	hormone activity			skin(1)	1						TATCCATAACGGAGTCTAAGG	0.512													13	8					0	0	0.013537	0	0
MORC1	27136	broad.mit.edu	37	3	108773680	108773680	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:108773680C>T	uc003dxl.2	-	14	1312	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K	MORC1_uc011bhn.1_Missense_Mutation_p.E409K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	409					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGGGATGGTTCCATGACCTCC	0.373													33	27					0	0	0.013726	0	0
CD96	10225	broad.mit.edu	37	3	111264049	111264049	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:111264049C>T	uc003dxw.2	+	2	388	c.218C>T	c.(217-219)CCC>CTC	p.P73L	CD96_uc003dxv.2_Missense_Mutation_p.P73L|CD96_uc003dxx.2_Missense_Mutation_p.P73L|CD96_uc010hpy.1_Missense_Mutation_p.P73L	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	73	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						GTCTATCATCCCCAATACGGC	0.478									Opitz_Trigonocephaly_syndrome				17	51					0	0	0.004007	0	0
CD96	10225	broad.mit.edu	37	3	111298075	111298075	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:111298075G>A	uc003dxw.2	+	5	963	c.793G>A	c.(793-795)GTT>ATT	p.V265I	CD96_uc003dxv.2_Missense_Mutation_p.V249I|CD96_uc003dxx.2_Missense_Mutation_p.V249I|CD96_uc010hpy.1_Missense_Mutation_p.V249I	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	265	Extracellular (Potential).				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						CACAGTCAAGGTTTTTGGTAA	0.502									Opitz_Trigonocephaly_syndrome				25	25					0	0	0.005443	0	0
PHLDB2	90102	broad.mit.edu	37	3	111685506	111685506	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:111685506T>C	uc010hqa.2	+	14	3535	c.3124T>C	c.(3124-3126)TTG>CTG	p.L1042L	PHLDB2_uc003dyc.2_Silent_p.L1026L|PHLDB2_uc003dyd.2_Silent_p.L999L|PHLDB2_uc003dyg.2_Silent_p.L1042L|PHLDB2_uc003dyh.2_Silent_p.L999L|PHLDB2_uc003dyi.2_Silent_p.L533L|PHLDB2_uc003dyj.2_Silent_p.L97L	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1042	Potential.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GGAGAGACTTTTGAAGCAGGC	0.413													37	17					0	0	0.006230	0	0
SLC9A10	285335	broad.mit.edu	37	3	111958713	111958713	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:111958713C>T	uc003dyu.2	-	12	1642	c.1420G>A	c.(1420-1422)GCA>ACA	p.A474T	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.A426T	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	474					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						AGTGTAATTGCTTTCTCAATC	0.328													18	10					0	0	0.008871	0	0
CD200	4345	broad.mit.edu	37	3	112066667	112066667	+	Silent	SNP	C	T	T	rs149174117		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:112066667C>T	uc003dyw.2	+	5	903	c.759C>T	c.(757-759)ACC>ACT	p.T253T	CD200_uc010hqd.1_Silent_p.T112T|CD200_uc003dyx.2_Silent_p.T228T|CD200_uc003dyy.2_Silent_p.T112T|CD200_uc003dyz.2_Silent_p.T154T	NM_001004196	NP_001004196	P41217	OX2G_HUMAN	CD200 antigen isoform b	228	Ig-like C2-type.|Extracellular (Potential).				regulation of immune response	integral to plasma membrane					0		Acute lymphoblastic leukemia(4;1.7e-08)|all_hematologic(4;8.82e-05)				TTAAGCAAACCGTCAACAAAG	0.512													26	30					0	0	0.005443	0	0
CD200R1L	344807	broad.mit.edu	37	3	112538652	112538652	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:112538652C>T	uc003dzi.1	-	5	996	c.770G>A	c.(769-771)GGA>GAA	p.G257E	CD200R1L_uc011bhw.1_Missense_Mutation_p.G236E|CD200R1L_uc010hqf.1_Missense_Mutation_p.G236E	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	257	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)	1						GAAAACAAATCCTGTGGTGAC	0.368													19	18					0	0	0.012319	0	0
CCDC52	152185	broad.mit.edu	37	3	113218403	113218403	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:113218403C>T	uc003eag.3	-	4	465	c.174G>A	c.(172-174)TCG>TCA	p.S58S	CCDC52_uc003eaf.3_RNA|CCDC52_uc011bie.1_Silent_p.S70S|CCDC52_uc003eai.1_Silent_p.S58S	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	58					cell division|mitosis	centriole|spindle	protein binding				0						CTCTATTCTTCGATTTGTGTA	0.363													5	14					0	0	0.001168	0	0
QTRTD1	79691	broad.mit.edu	37	3	113804628	113804628	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:113804628C>T	uc003eay.2	+	10	1355	c.1125C>T	c.(1123-1125)GCC>GCT	p.A375A	QTRTD1_uc003eaz.2_Silent_p.A387A|QTRTD1_uc011biq.1_Silent_p.A252A|QTRTD1_uc011bir.1_Silent_p.A269A	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	375					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						AGCTGCTGGCCGGAGTCCTGC	0.478													13	58					0	0	0.016723	0	0
PLA1A	51365	broad.mit.edu	37	3	119325753	119325753	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:119325753G>A	uc003ecu.2	+	2	245	c.206G>A	c.(205-207)GGA>GAA	p.G69E	PLA1A_uc003ecv.2_Missense_Mutation_p.G69E|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Intron	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	69					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CTAGTAGAAGGAAGCAGTGAC	0.478													63	68					0	0	0.014410	0	0
WDR5B	54554	broad.mit.edu	37	3	122134306	122134306	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:122134306C>T	uc003efa.1	-	1	577	c.70G>A	c.(70-72)GAA>AAA	p.E24K		NM_019069	NP_061942	Q86VZ2	WDR5B_HUMAN	WD repeat domain 5B	24										ovary(3)	3				GBM - Glioblastoma multiforme(114;0.0704)		TCAGGCACTTCCTTGCTCTGA	0.493													16	65					0	0	0.004007	0	0
MYLK	4638	broad.mit.edu	37	3	123419745	123419745	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:123419745C>T	uc003ego.2	-	18	2852	c.2570G>A	c.(2569-2571)GGG>GAG	p.G857E	MYLK_uc011bjw.1_Missense_Mutation_p.G857E|MYLK_uc003egp.2_Missense_Mutation_p.G788E|MYLK_uc003egq.2_Missense_Mutation_p.G857E|MYLK_uc003egr.2_Missense_Mutation_p.G788E|MYLK_uc003egs.2_Missense_Mutation_p.G681E|MYLK_uc003egt.2_Missense_Mutation_p.G48E	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	857					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CCAACCCTGCCCTCTTGCTGG	0.657													26	26					0	0	0.006320	0	0
KALRN	8997	broad.mit.edu	37	3	124397085	124397085	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:124397085G>A	uc003ehg.2	+	50	7369	c.7242G>A	c.(7240-7242)GTG>GTA	p.V2414V	KALRN_uc003ehk.2_Silent_p.V717V	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2413					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGGCGGAAGTGGAGAACACGG	0.483													16	52					0	0	0.004007	0	0
KIAA1257	57501	broad.mit.edu	37	3	128712088	128712088	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:128712088G>A	uc003elj.3	-	2	256	c.60C>T	c.(58-60)TCC>TCT	p.S20S	KIAA1257_uc003elg.1_Silent_p.S20S|KIAA1257_uc003eli.3_5'Flank	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	20											0						AGCTAGTGATGGAGGAGATGG	0.637													13	11					0	0	0.013537	0	0
COL6A6	131873	broad.mit.edu	37	3	130285597	130285597	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:130285597G>A	uc010htl.2	+	4	1365	c.1334G>A	c.(1333-1335)GGG>GAG	p.G445E		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	445	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GATGGCTCAGGGAGCACCCAG	0.488													19	14					0	0	0.007413	0	0
COL6A6	131873	broad.mit.edu	37	3	130381038	130381038	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:130381038G>A	uc010htl.2	+	34	6419	c.6388G>A	c.(6388-6390)GAG>AAG	p.E2130K	COL6A6_uc003eni.3_Missense_Mutation_p.E229K	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	2130	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CAAGGAACTGGAGGATCTCGC	0.468													52	39					0	0	0.014410	0	0
ACAD11	84129	broad.mit.edu	37	3	132347190	132347190	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:132347190G>A	uc003eov.3	-	8	1444	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F	ACAD11_uc011blr.1_5'Flank|ACAD11_uc003eoy.2_Missense_Mutation_p.S355F	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	355						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						TTACCGTTTGGAGAGTTGTAG	0.373													18	27					0	0	0.008871	0	0
STAG1	10274	broad.mit.edu	37	3	136139954	136139954	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:136139954G>A	uc003era.1	-	20	2381	c.2089C>T	c.(2089-2091)CGG>TGG	p.R697W	STAG1_uc003erb.1_Missense_Mutation_p.R697W|STAG1_uc003erc.1_Missense_Mutation_p.R471W|STAG1_uc010hua.1_Missense_Mutation_p.R560W	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	697					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						GAAGTTAACCGCTTTAATGTA	0.224													12	68					0	0	0.016723	0	0
PRR23B	389151	broad.mit.edu	37	3	138738740	138738740	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:138738740G>A	uc003esy.1	-	1	1029	c.764C>T	c.(763-765)CCG>CTG	p.P255L		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	255	Pro-rich.									breast(1)	1						GGCCTTGCACGGAGGGCGTTC	0.677													9	32					0	0	0.006214	0	0
RASA2	5922	broad.mit.edu	37	3	141231116	141231116	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:141231116C>T	uc003etz.1	+	2	245	c.245C>T	c.(244-246)TCT>TTT	p.S82F	RASA2_uc010huq.1_Missense_Mutation_p.S82F|RASA2_uc003eua.1_Missense_Mutation_p.S82F	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	82	C2 1.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GTGGAAAAATCTTTAAGGTTG	0.294													23	26					0	0	0.004656	0	0
ATR	545	broad.mit.edu	37	3	142281947	142281947	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:142281947G>A	uc003eux.3	-	4	419	c.297C>T	c.(295-297)TTC>TTT	p.F99F		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	99					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCCAATTACTGAATTCTTTGA	0.313								Other_conserved_DNA_damage_response_genes					48	33					0	0	0.014410	0	0
TM4SF18	116441	broad.mit.edu	37	3	149051063	149051063	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:149051063G>A	uc003exa.2	-	2	244	c.107C>T	c.(106-108)TCC>TTC	p.S36F		NM_138786	NP_620141	Q96CE8	T4S18_HUMAN	transmembrane 4 L six family member 18	36	Extracellular (Potential).					integral to membrane				ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GGATGCATAGGAAGTTTGCCC	0.423													28	16					0	0	0.008361	0	0
TSC22D2	9819	broad.mit.edu	37	3	150129006	150129006	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:150129006C>T	uc003exv.2	+	1	2219	c.1869C>T	c.(1867-1869)TCC>TCT	p.S623S	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Silent_p.S623S	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	623							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TTGCAGATTCCCTGGCAAACC	0.458													21	19					0	0	0.010504	0	0
IGSF10	285313	broad.mit.edu	37	3	151171355	151171355	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:151171355A>G	uc011bod.1	-	3	532	c.532T>C	c.(532-534)TAC>CAC	p.Y178H		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	178					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATCTGGAGGTAGCTCAAAGAG	0.438													6	21					0	0	0.001984	0	0
AADAC	13	broad.mit.edu	37	3	151535330	151535330	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:151535330G>A	uc003eze.2	+	2	405	c.315G>A	c.(313-315)AGG>AGA	p.R105R		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	105	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CACTAAGAAGGGGGTTGTTTT	0.433													12	56					0	0	0.004007	0	0
SGEF	26084	broad.mit.edu	37	3	153840274	153840274	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:153840274T>C	uc011bog.1	+	2	704	c.493T>C	c.(493-495)TTG>CTG	p.L165L	uc003ezu.1_5'Flank|SGEF_uc011boh.1_Silent_p.L165L	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	165	Pro-rich.				regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CCTTACTGGGTTGACTGCCAG	0.701													17	10					0	0	0.007413	0	0
PLCH1	23007	broad.mit.edu	37	3	155203356	155203356	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:155203356C>T	uc011bok.1	-	22	3064	c.2787G>A	c.(2785-2787)AGG>AGA	p.R929R	PLCH1_uc011boj.1_Silent_p.R929R|PLCH1_uc011bol.1_Silent_p.R891R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	929					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGCTCTTTTTCCTGCCTTTGG	0.498													29	39					0	0	0.008361	0	0
VEPH1	79674	broad.mit.edu	37	3	157213110	157213110	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:157213110C>T	uc003fbj.1	-	2	346	c.29G>A	c.(28-30)GGA>GAA	p.G10E	VEPH1_uc003fbk.1_Missense_Mutation_p.G10E|VEPH1_uc010hvu.1_Missense_Mutation_p.G10E|VEPH1_uc003fbm.2_Missense_Mutation_p.G10E|VEPH1_uc003fbn.2_Missense_Mutation_p.G10E	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	10						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			ATCTTTTTGTCCCAAAACCAG	0.428													43	50					0	0	0.011902	0	0
SI	6476	broad.mit.edu	37	3	164735377	164735377	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:164735377G>A	uc003fei.2	-	31	3780	c.3718C>T	c.(3718-3720)CGG>TGG	p.R1240W		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1240	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATAATTCCCGAACCTCTGAA	0.343										HNSCC(35;0.089)			5	21					0	0	0.014758	0	0
SI	6476	broad.mit.edu	37	3	164776753	164776753	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:164776753C>T	uc003fei.2	-	12	1458	c.1396G>A	c.(1396-1398)GAG>AAG	p.E466K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	466	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATTTTACCTCTCCAATAATT	0.303										HNSCC(35;0.089)			9	8					0	0	0.006214	0	0
WDR49	151790	broad.mit.edu	37	3	167247019	167247019	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:167247019T>C	uc003fev.1	-	10	1477	c.1171A>G	c.(1171-1173)AAC>GAC	p.N391D	WDR49_uc003feu.1_Missense_Mutation_p.N216D|WDR49_uc011bpd.1_Missense_Mutation_p.N455D|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	391	WD 6.									large_intestine(1)|ovary(1)|skin(1)	3						GATACCAGGTTAGCTCCTCCT	0.393													16	12					0	0	0.004990	0	0
PDCD10	11235	broad.mit.edu	37	3	167414821	167414821	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:167414821G>A	uc003fex.2	-	5	642	c.244C>T	c.(244-246)CGT>TGT	p.R82C	PDCD10_uc003fez.2_Missense_Mutation_p.R82C|PDCD10_uc003fey.2_Missense_Mutation_p.R82C	NM_007217	NP_009148	Q9BUL8	PDC10_HUMAN	programmed cell death 10	82					angiogenesis|apoptosis|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of MAP kinase activity	cytosol|Golgi membrane|plasma membrane	protein homodimerization activity|protein N-terminus binding			lung(1)|central_nervous_system(1)	2						GCTGCCATACGAAGAAGGGAC	0.348									Familial_Cerebral_Cavernous_Angioma				7	36					0	0	0.001984	0	0
MECOM	2122	broad.mit.edu	37	3	168807957	168807957	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:168807957C>T	uc003ffi.3	-	14	2937	c.2668G>A	c.(2668-2670)GAT>AAT	p.D890N	MECOM_uc010hwk.1_Missense_Mutation_p.D904N|MECOM_uc003ffj.3_Missense_Mutation_p.D955N|MECOM_uc011bpi.1_Missense_Mutation_p.D882N|MECOM_uc003ffn.3_Missense_Mutation_p.D890N|MECOM_uc003ffk.2_Missense_Mutation_p.D881N|MECOM_uc003ffl.2_Missense_Mutation_p.D1041N|MECOM_uc011bpj.1_Missense_Mutation_p.D1078N|MECOM_uc011bpk.1_Missense_Mutation_p.D880N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	890	Asp/Glu-rich (acidic).				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ACTTCTTCATCATCCAGCAAG	0.348													12	60					0	0	0.016723	0	0
MECOM	2122	broad.mit.edu	37	3	168834378	168834378	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:168834378C>T	uc003ffi.3	-	7	987	c.718G>A	c.(718-720)GAG>AAG	p.E240K	MECOM_uc010hwk.1_Missense_Mutation_p.E263K|MECOM_uc003ffj.3_Missense_Mutation_p.E305K|MECOM_uc011bpi.1_Missense_Mutation_p.E241K|MECOM_uc003ffn.3_Missense_Mutation_p.E240K|MECOM_uc003ffk.2_Missense_Mutation_p.E240K|MECOM_uc003ffl.2_Missense_Mutation_p.E400K|MECOM_uc011bpj.1_Missense_Mutation_p.E428K|MECOM_uc011bpk.1_Missense_Mutation_p.E230K|MECOM_uc010hwn.2_Missense_Mutation_p.E428K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	240	Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TTCTTGCCCTCACAAAACCTC	0.443													7	56					0	0	0.001984	0	0
MECOM	2122	broad.mit.edu	37	3	169099133	169099133	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:169099133C>T	uc011bpj.1	-	2	620	c.217G>A	c.(217-219)GAT>AAT	p.D73N	MECOM_uc003ffl.2_Missense_Mutation_p.D45N|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.D73N|MECOM_uc011bpl.1_Missense_Mutation_p.D73N	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATGGGGATATCATCAGGGATG	0.473													47	46					0	0	0.014410	0	0
SLC2A2	6514	broad.mit.edu	37	3	170716012	170716012	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:170716012G>A	uc003fhe.1	-	10	1653	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	SLC2A2_uc003fhf.1_Silent_p.F275F|SLC2A2_uc011bpu.1_Silent_p.F321F	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	448	Helical; Name=11; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GAGCTACAATGAAATTGCAGG	0.458													31	22					0	0	0.012213	0	0
TNFSF10	8743	broad.mit.edu	37	3	172224374	172224374	+	Missense_Mutation	SNP	C	T	T	rs145536359		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:172224374C>T	uc003fid.2	-	5	849	c.754G>A	c.(754-756)GAA>AAA	p.E252K	TNFSF10_uc003fie.2_3'UTR	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	252	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding	p.E252K(1)		skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CTGTCATTTTCCTTAAGCTCA	0.373													7	42					0	0	0.003080	0	0
SPATA16	83893	broad.mit.edu	37	3	172642095	172642095	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:172642095G>A	uc003fin.3	-	8	1399	c.1241C>T	c.(1240-1242)CCT>CTT	p.P414L		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	414					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CAGACCGAAAGGTGTTTTATG	0.333													27	24					0	0	0.008361	0	0
HTR3D	200909	broad.mit.edu	37	3	183756374	183756374	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:183756374G>A	uc011bqv.1	+	7	1097	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E	HTR3D_uc003fmj.2_Missense_Mutation_p.G191E|HTR3D_uc011bqu.1_Missense_Mutation_p.G316E|HTR3D_uc010hxp.2_Missense_Mutation_p.G145E	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	366	Cytoplasmic (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCCCAGAAGGGAAATAAGGGC	0.512													4	14					0	0	0.009096	0	0
CHRD	8646	broad.mit.edu	37	3	184102353	184102353	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:184102353C>T	uc003fov.2	+	13	1715	c.1469C>T	c.(1468-1470)GCC>GTC	p.A490V	CHRD_uc003fow.2_Missense_Mutation_p.A120V|CHRD_uc003fox.2_Missense_Mutation_p.A490V|CHRD_uc003foy.2_Missense_Mutation_p.A120V|CHRD_uc010hyc.2_Missense_Mutation_p.A80V|CHRD_uc011brr.1_Missense_Mutation_p.A120V	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	490	CHRD 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGGCTGGGTGCCCGAGGGGCT	0.622													79	51					0	0	0.014410	0	0
CHRD	8646	broad.mit.edu	37	3	184105719	184105719	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:184105719G>A	uc003fov.2	+	20	2698	c.2452G>A	c.(2452-2454)GGG>AGG	p.G818R	CHRD_uc003fow.2_Missense_Mutation_p.G448R|CHRD_uc003fox.2_Missense_Mutation_p.G818R|CHRD_uc003foy.2_Missense_Mutation_p.G448R|CHRD_uc010hyc.2_Missense_Mutation_p.G408R|CHRD_uc011brr.1_Missense_Mutation_p.G360R	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	818	VWFC 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ATCCCTACAGGGGGGCACTGG	0.607													5	22					0	0	0.001168	0	0
MAP3K13	9175	broad.mit.edu	37	3	185190809	185190809	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:185190809C>T	uc010hyf.2	+	12	1956	c.1690C>T	c.(1690-1692)CCC>TCC	p.P564S	MAP3K13_uc011brt.1_Missense_Mutation_p.P357S|MAP3K13_uc011bru.1_Missense_Mutation_p.P420S|MAP3K13_uc003fpi.2_Missense_Mutation_p.P564S|MAP3K13_uc010hyg.2_Missense_Mutation_p.P254S	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	564					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGAAGTGGCTCCCACTGCATC	0.507													25	80					0	0	0.004656	0	0
DNAJB11	51726	broad.mit.edu	37	3	186302326	186302326	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:186302326C>T	uc003fqi.2	+	9	1180	c.960C>T	c.(958-960)ATC>ATT	p.I320I		NM_016306	NP_057390	Q9UBS4	DJB11_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 11	320					protein folding	endoplasmic reticulum lumen	heat shock protein binding			ovary(1)|lung(1)	2	all_cancers(143;2.84e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.44e-20)	GBM - Glioblastoma multiforme(93;0.0476)		CTTTGATAATCACTTTTGATG	0.363													7	14					0	0	0.003080	0	0
TP63	8626	broad.mit.edu	37	3	189587144	189587144	+	Missense_Mutation	SNP	G	A	A	rs140374868		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:189587144G>A	uc003fry.2	+	9	1250	c.1161G>A	c.(1159-1161)ATG>ATA	p.M387I	TP63_uc003frx.2_Missense_Mutation_p.M387I|TP63_uc003frz.2_Missense_Mutation_p.M387I|TP63_uc010hzc.1_Missense_Mutation_p.M387I|TP63_uc003fsa.2_Missense_Mutation_p.M293I|TP63_uc003fsb.2_Missense_Mutation_p.M293I|TP63_uc003fsc.2_Missense_Mutation_p.M293I|TP63_uc003fsd.2_Missense_Mutation_p.M293I|TP63_uc010hzd.1_Missense_Mutation_p.M208I|TP63_uc003fse.1_Missense_Mutation_p.M264I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	387	Interaction with HIPK2.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.M387I(1)		skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GTATCCAGATGACATCCATCA	0.393									Hay-Wells_syndrome	HNSCC(45;0.13)			13	15					0	0	0.008871	0	0
LRRC15	131578	broad.mit.edu	37	3	194080247	194080247	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:194080247G>A	uc003ftu.2	-	2	1612	c.1526C>T	c.(1525-1527)ACC>ATC	p.T509I	LRRC15_uc003ftt.2_Missense_Mutation_p.T515I	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	509	Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CACAGGGCTGGTTAGCTCAGT	0.572													6	28					0	0	0.001168	0	0
LRRC15	131578	broad.mit.edu	37	3	194081019	194081019	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:194081019G>A	uc003ftu.2	-	2	840	c.754C>T	c.(754-756)CTG>TTG	p.L252L	LRRC15_uc003ftt.2_Silent_p.L258L	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	252	LRR 9.|Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		TTGTTGGACAGGTAGAGTCTC	0.552													31	21					0	0	0.010818	0	0
TM4SF19	116211	broad.mit.edu	37	3	196050787	196050787	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:196050787G>A	uc003fwl.1	-	5	656	c.531C>T	c.(529-531)TTC>TTT	p.F177F	TM4SF19_uc003fwj.2_RNA|uc003fwk.1_Missense_Mutation_p.E18K|TM4SF19_uc010iad.1_Missense_Mutation_p.S176F|TM4SF19_uc011btv.1_Silent_p.F151F	NM_138461	NP_612470	Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19	177	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		GAAGGGCGGAGAAGAGGGACA	0.547													21	18					0	0	0.012319	0	0
DLG1	1739	broad.mit.edu	37	3	196771564	196771564	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr3:196771564T>C	uc003fxo.3	-	26	2835	c.2645A>G	c.(2644-2646)AAC>AGC	p.N882S	DLG1_uc011bub.1_Missense_Mutation_p.N778S|DLG1_uc011buc.1_Missense_Mutation_p.N766S|DLG1_uc011bud.1_Missense_Mutation_p.N565S|DLG1_uc003fxn.3_Missense_Mutation_p.N904S|DLG1_uc011bue.1_Missense_Mutation_p.N870S|DLG1_uc010ial.2_Missense_Mutation_p.N882S	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	882	Guanylate kinase-like.				actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		TTTCACTTGGTTGTAAATGTC	0.348													11	32					0	0	0.010729	0	0
TMEM175	84286	broad.mit.edu	37	4	941545	941545	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:941545C>T	uc003gbq.2	+	2	116	c.18C>T	c.(16-18)ACC>ACT	p.T6T	TMEM175_uc010ibl.1_Silent_p.T6T|TMEM175_uc003gbp.1_5'UTR|TMEM175_uc003gbr.2_5'UTR|TMEM175_uc003gbu.2_Intron|TMEM175_uc003gbs.2_5'UTR|TMEM175_uc003gbt.2_5'UTR|TMEM175_uc003gbv.2_Intron	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	6						integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			AGCCCCGGACCCCAGAGCAGG	0.687													11	3					0	0	0.010729	0	0
FAM193A	8603	broad.mit.edu	37	4	2648459	2648459	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:2648459C>T	uc010icl.2	+	5	689	c.338C>T	c.(337-339)ACC>ATC	p.T113I	FAM193A_uc010ick.2_Missense_Mutation_p.T313I|FAM193A_uc003gfd.2_Missense_Mutation_p.T113I|FAM193A_uc011bvm.1_Missense_Mutation_p.T113I|FAM193A_uc011bvn.1_Missense_Mutation_p.T113I|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	113	Potential.									ovary(3)	3						ACATACAGTACCTTGCTGCAG	0.567													45	12					0	0	0.011902	0	0
HTT	3064	broad.mit.edu	37	4	3211628	3211628	+	Silent	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:3211628G>C	uc011bvq.1	+	48	6517	c.6372G>C	c.(6370-6372)CTG>CTC	p.L2124L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2122					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTGCAGAGCTGGTGAATCGGA	0.498													3	81					0	0	0.004672	0	0
GPR78	27201	broad.mit.edu	37	4	8589044	8589044	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:8589044G>A	uc003glk.2	+	3	1465	c.1046G>A	c.(1045-1047)GGC>GAC	p.G349D	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	349	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						ACCCACAACGGCTCTGTGGAC	0.632													15	12					0	0	0.010504	0	0
WDR1	9948	broad.mit.edu	37	4	10117765	10117765	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:10117765C>T	uc003gmf.2	-	2	393	c.110G>A	c.(109-111)GGA>GAA	p.G37E	WDR1_uc003gmg.2_Missense_Mutation_p.G37E	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	37					platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		GACGCACTTTCCATTGGTGTA	0.592													13	10					0	0	0.016723	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13339090	13339090	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:13339090G>A	uc003gms.2	+	1		c.4054G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						TTGGAATTCAGGGCATTGCTA	0.423													7	3					0	0	0.003080	0	0
PTTG2	10744	broad.mit.edu	37	4	37962247	37962247	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:37962247G>A	uc011bye.1	+	1	192	c.192G>A	c.(190-192)TTG>TTA	p.L64L	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	64	D-box (By similarity).				chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						GAAAGGCTTTGGGCACTGTCA	0.423													14	25					0	0	0.016723	0	0
TLR1	7096	broad.mit.edu	37	4	38799722	38799722	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:38799722G>A	uc003gtl.2	-	4	1005	c.731C>T	c.(730-732)CCA>CTA	p.P244L		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	244	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TGATAACTTTGGATTTGTTTG	0.338													4	8					0	0	0.009096	0	0
LIMCH1	22998	broad.mit.edu	37	4	41678479	41678479	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:41678479G>A	uc003gvu.3	+	18	2421	c.2367G>A	c.(2365-2367)CAG>CAA	p.Q789Q	LIMCH1_uc003gvv.3_Silent_p.Q789Q|LIMCH1_uc003gvw.3_Silent_p.Q788Q|LIMCH1_uc003gvx.3_Silent_p.Q801Q|LIMCH1_uc003gwe.3_Intron|LIMCH1_uc003gvy.3_Silent_p.Q617Q|LIMCH1_uc003gwa.3_Silent_p.Q629Q|LIMCH1_uc003gvz.3_Silent_p.Q1173Q|LIMCH1_uc011byu.1_Silent_p.Q622Q|LIMCH1_uc003gwc.3_Silent_p.Q634Q|LIMCH1_uc003gwd.3_Silent_p.Q622Q|LIMCH1_uc011byv.1_Silent_p.Q539Q|LIMCH1_uc011byw.1_Silent_p.Q88Q	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	789	Glu-rich.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GTTTGCTCCAGGTAGGATGGA	0.423													4	25					0	0	0.014758	0	0
GABRA4	2557	broad.mit.edu	37	4	46994956	46994956	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:46994956C>T	uc003gxg.2	-	2	233	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	32					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCTGGGGATTCGTTTAAACTG	0.448													15	19					0	0	0.003163	0	0
CNGA1	1259	broad.mit.edu	37	4	47951898	47951898	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:47951898G>T	uc003gxt.3	-	6	517	c.251C>A	c.(250-252)CCT>CAT	p.P84H	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.P153H|CNGA1_uc003gxv.1_Missense_Mutation_p.P84H	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	84	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						AATGGCACCAGGCAGGTACTG	0.373													6	27					5.18039e-06	5.90331e-06	0.003080	1	0
TXK	7294	broad.mit.edu	37	4	48097181	48097181	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:48097181G>A	uc003gxx.3	-	7	646	c.560C>T	c.(559-561)TCC>TTC	p.S187F	TXK_uc003gxy.1_Missense_Mutation_p.S187F	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	187	SH2.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CATAAATACGGAAATTGTGTA	0.333													5	16					0	0	0.001168	0	0
PDGFRA	5156	broad.mit.edu	37	4	55144631	55144631	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:55144631A>T	uc003han.3	+	15	2436	c.2105A>T	c.(2104-2106)AAG>ATG	p.K702M	PDGFRA_uc003haa.2_Missense_Mutation_p.K462M|PDGFRA_uc010igq.1_Missense_Mutation_p.K596M|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_Missense_Mutation_p.K81M	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	702	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GAGAAGCCAAAGAAAGAGCTG	0.438			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			13	24					0	0	0.002450	0	0
KDR	3791	broad.mit.edu	37	4	55955863	55955863	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:55955863G>A	uc003has.2	-	24	3601	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F	KDR_uc003hat.1_Missense_Mutation_p.S1100F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1100	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTACCTAAGGAAAATATTTC	0.413			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			28	78					0	0	0.007291	0	0
LPHN3	23284	broad.mit.edu	37	4	62903448	62903448	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:62903448G>A	uc010ihh.2	+	21	3561	c.3388_splice	c.e21-1	p.V1130_splice	LPHN3_uc003hcq.3_Splice_Site_p.V1130_splice|LPHN3_uc003hct.2_Splice_Site_p.V514_splice	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TAATTGGCTAGGTACGAAAAG	0.358													21	24					0	0	0.003954	0	0
ENAM	10117	broad.mit.edu	37	4	71509927	71509927	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:71509927C>T	uc011caw.1	+	9	3065	c.2784C>T	c.(2782-2784)ATC>ATT	p.I928I		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	928					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CAACAAGCATCCTACCAGGCC	0.478													10	36					0	0	0.008291	0	0
GC	2638	broad.mit.edu	37	4	72629572	72629572	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:72629572C>T	uc003hge.2	-	5	708	c.555G>A	c.(553-555)ATG>ATA	p.M185I	GC_uc003hgd.2_Missense_Mutation_p.M63I|GC_uc010iie.2_Missense_Mutation_p.M185I|GC_uc010iif.2_Missense_Mutation_p.M204I	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	185	Albumin 1.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity	p.M185T(1)		ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	AGGACCCTACCATAGAAAGAT	0.368													25	32					0	0	0.004656	0	0
EREG	2069	broad.mit.edu	37	4	75250501	75250501	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:75250501G>A	uc003hie.1	+	5	652	c.486G>A	c.(484-486)GGG>GGA	p.G162G		NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	162	Cytoplasmic (Potential).				angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			TTACCTCAGGGGATCCAGAGT	0.378													7	14					0	0	0.001984	0	0
PARM1	25849	broad.mit.edu	37	4	75937638	75937638	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:75937638G>A	uc003hih.1	+	2	287	c.47G>A	c.(46-48)TGG>TAG	p.W16*		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	16					positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						TCCACAGGATGGAGGGTACAG	0.438													17	18					0	0	0.006122	0	0
PARM1	25849	broad.mit.edu	37	4	75938326	75938326	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:75938326G>A	uc003hih.1	+	2	975	c.735G>A	c.(733-735)GTG>GTA	p.V245V		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	245	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						TTCCCAGGGTGATCATGCAGG	0.473													17	20					0	0	0.004990	0	0
FRAS1	80144	broad.mit.edu	37	4	79400700	79400700	+	Silent	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:79400700T>C	uc003hlb.2	+	56	8711	c.8271T>C	c.(8269-8271)CTT>CTC	p.L2757L		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2752	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATGTCATGCTTATTGATGACA	0.507													12	31					0	0	0.003163	0	0
SCD5	79966	broad.mit.edu	37	4	83719481	83719481	+	Silent	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:83719481G>T	uc003hna.2	-	1	530	c.210C>A	c.(208-210)GCC>GCA	p.A70A	SCD5_uc003hnb.3_Silent_p.A70A|SCD5_uc003hnc.2_Silent_p.A70A	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	70	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				TGAGTGGCTTGGCTTTGGGGA	0.463													9	8					0.000442599	0.000503443	0.006214	1	0
HPSE	10855	broad.mit.edu	37	4	84240539	84240539	+	Silent	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:84240539G>T	uc003hoj.3	-	3	556	c.457C>A	c.(457-459)CGA>AGA	p.R153R	HPSE_uc010ika.2_Silent_p.R153R|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Missense_Mutation_p.P10Q|HPSE_uc011cct.1_Silent_p.R153R|HPSE_uc003hok.3_Silent_p.R153R	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	153					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	TAGTGTTCTCGGAGTAGCAAT	0.443													18	40					1.01871e-10	1.16727e-10	0.008871	1	0
AFF1	4299	broad.mit.edu	37	4	88036097	88036097	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:88036097C>T	uc003hqj.3	+	11	2498	c.2091C>T	c.(2089-2091)ACC>ACT	p.T697T	AFF1_uc011ccz.1_Silent_p.T704T|AFF1_uc003hqk.3_Silent_p.T697T|AFF1_uc011cda.1_Silent_p.T335T	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	697						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AGGACAGGACCCCTGAGCACT	0.637													6	32					0	0	0.001984	0	0
MEPE	56955	broad.mit.edu	37	4	88766960	88766960	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:88766960G>A	uc003hqy.2	+	4	979	c.940G>A	c.(940-942)GGA>AGA	p.G314R	MEPE_uc010ikn.2_Missense_Mutation_p.G201R	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	314					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AGAAAATGGTGGAAATACCAT	0.438													12	35					0	0	0.013537	0	0
HERC5	51191	broad.mit.edu	37	4	89400658	89400658	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:89400658G>A	uc003hrt.2	+	13	1890	c.1737G>A	c.(1735-1737)AGG>AGA	p.R579R	HERC5_uc011cdm.1_Silent_p.R217R	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	579					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		AGCTGCACAGGGTAAGAGTTC	0.408													3	17					0	0	0.004672	0	0
PDHA2	5161	broad.mit.edu	37	4	96762199	96762199	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:96762199C>T	uc003htr.3	+	1	961	c.898C>T	c.(898-900)CGT>TGT	p.R300C		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	300					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	AGTCAGTTATCGTACACGAGA	0.433													7	21					0	0	0.004482	0	0
C4orf37	285555	broad.mit.edu	37	4	98633937	98633937	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:98633937C>T	uc003htt.1	-	10	1323	c.1233G>A	c.(1231-1233)AGG>AGA	p.R411R		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	411											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GGCAAGATTTCCTTAAAACAG	0.338													38	19					0	0	0.008740	0	0
ADH1B	125	broad.mit.edu	37	4	100239275	100239275	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:100239275G>A	uc003hus.3	-	3	271	c.187C>T	c.(187-189)CCT>TCT	p.P63S	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.P23S|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.P23S	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	63					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	AAAATCACAGGAAGGGGGGTC	0.507													50	43					0	0	0.014410	0	0
GSTCD	79807	broad.mit.edu	37	4	106755689	106755689	+	Silent	SNP	C	T	T	rs137883958	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:106755689C>T	uc003hxz.3	+	9	1674	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	GSTCD_uc003hxy.3_Silent_p.F447F|GSTCD_uc011cfb.1_Silent_p.F157F	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	534						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		GGGCTTCCTTCGTCACATGCC	0.423													13	52					0	0	0.002450	0	0
ANK2	287	broad.mit.edu	37	4	114262932	114262932	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:114262932G>A	uc003ibe.3	+	33	4082	c.3982G>A	c.(3982-3984)GCC>ACC	p.A1328T	ANK2_uc003ibd.3_Missense_Mutation_p.A1319T|ANK2_uc003ibf.3_Missense_Mutation_p.A1328T|ANK2_uc011cgc.1_Missense_Mutation_p.A504T|ANK2_uc003ibg.3_Missense_Mutation_p.A323T|ANK2_uc003ibh.3_Missense_Mutation_p.A2T|ANK2_uc011cgb.1_Missense_Mutation_p.A1343T	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1295					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ACCTTATATGGCCAAATTTGT	0.393													41	43					0	0	0.006999	0	0
UGT8	7368	broad.mit.edu	37	4	115544722	115544722	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:115544722C>T	uc003ibs.2	+	2	1208	c.686C>T	c.(685-687)TCC>TTC	p.S229F	UGT8_uc003ibt.2_Missense_Mutation_p.S229F|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	229					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		CCAGAGAAGTCCATGTATGAT	0.453													12	43					0	0	0.010729	0	0
PRSS12	8492	broad.mit.edu	37	4	119256633	119256633	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:119256633G>A	uc003ica.1	-	3	862	c.815C>T	c.(814-816)TCC>TTC	p.S272F		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	272						membrane	scavenger receptor activity			skin(1)	1						TTTACCATGGGAAAAGCTACA	0.378													7	19					0	0	0.003080	0	0
SEC24D	9871	broad.mit.edu	37	4	119659432	119659432	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:119659432G>A	uc003ici.3	-	19	2752	c.2480C>T	c.(2479-2481)CCT>CTT	p.P827L	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.P828L|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	827					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TGCTGCAGAAGGACTTGCACA	0.353													12	45					0	0	0.003163	0	0
USP53	54532	broad.mit.edu	37	4	120189539	120189539	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:120189539C>T	uc003ics.3	+	13	2318	c.1252C>T	c.(1252-1254)CGG>TGG	p.R418W	USP53_uc003icr.3_Missense_Mutation_p.R418W|USP53_uc003icu.3_Missense_Mutation_p.R41W|USP53_uc003ict.2_Missense_Mutation_p.R41W	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	418					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						ATCATCTAATCGGAGCCACAG	0.358													13	12					0	0	0.016723	0	0
TRPC3	7222	broad.mit.edu	37	4	122835950	122835950	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:122835950G>A	uc003ieg.2	-	4	1400	c.1326C>T	c.(1324-1326)ATC>ATT	p.I442I	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Silent_p.I369I|TRPC3_uc011cgl.1_Silent_p.I106I	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	357	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TGCAAGGTGCGATCCAGTAGC	0.483													7	6					0	0	0.003080	0	0
FAT4	79633	broad.mit.edu	37	4	126369722	126369722	+	Silent	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:126369722A>T	uc003ifj.3	+	9	7551	c.7551A>T	c.(7549-7551)CCA>CCT	p.P2517P	FAT4_uc011cgp.1_Silent_p.P815P|FAT4_uc003ifi.1_5'UTR	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2517	Extracellular (Potential).|Cadherin 24.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACATTGACCCACTGAGGGGAG	0.428													16	27					0	0	0.003163	0	0
FAT4	79633	broad.mit.edu	37	4	126370371	126370371	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:126370371G>A	uc003ifj.3	+	9	8200	c.8200G>A	c.(8200-8202)GAA>AAA	p.E2734K	FAT4_uc011cgp.1_Missense_Mutation_p.E1032K|FAT4_uc003ifi.1_Missense_Mutation_p.E212K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2734	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTTGGACAGGGAAAAAGTATC	0.348													16	20					0	0	0.006122	0	0
FAT4	79633	broad.mit.edu	37	4	126411517	126411517	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:126411517A>G	uc003ifj.3	+	17	13540	c.13540A>G	c.(13540-13542)ACC>GCC	p.T4514A	FAT4_uc011cgp.1_Missense_Mutation_p.T2755A|FAT4_uc003ifi.1_Missense_Mutation_p.T1991A	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4514	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGCTGCGCAACCGTCTTGGC	0.567													9	30					0	0	0.010729	0	0
SCLT1	132320	broad.mit.edu	37	4	129873956	129873956	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:129873956G>A	uc003igp.2	-	14	1692	c.1186C>T	c.(1186-1188)CGA>TGA	p.R396*	SCLT1_uc003ign.2_Nonsense_Mutation_p.R60*|SCLT1_uc003igo.2_5'UTR|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	396	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						TCTGTTAATCGAGAAATTTGT	0.259													15	43					0	0	0.002450	0	0
PCDH18	54510	broad.mit.edu	37	4	138451272	138451272	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:138451272G>A	uc003ihe.3	-	1	2358	c.1971C>T	c.(1969-1971)ATC>ATT	p.I657I	PCDH18_uc003ihf.3_Silent_p.I650I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.I437I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	657	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTCCTGAATGATAACTGACA	0.423													60	60					0	0	0.014410	0	0
LRBA	987	broad.mit.edu	37	4	151827463	151827463	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:151827463A>T	uc010ipj.2	-	12	2062	c.1588T>A	c.(1588-1590)TAT>AAT	p.Y530N	LRBA_uc003ilu.3_Missense_Mutation_p.Y530N|LRBA_uc010ipk.1_Missense_Mutation_p.Y449N	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	530						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCAAGGCTATATCCTATTACC	0.363													47	37					0	0	0.014410	0	0
SH3D19	152503	broad.mit.edu	37	4	152069194	152069194	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:152069194C>T	uc010ipl.1	-	11	2212	c.1122G>A	c.(1120-1122)CAG>CAA	p.Q374Q	SH3D19_uc003imb.2_Silent_p.Q152Q|SH3D19_uc003imc.2_Silent_p.Q338Q|SH3D19_uc003ime.2_Silent_p.Q374Q|SH3D19_uc010ipm.2_Silent_p.Q374Q	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	374					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TTTGTTTTTTCTGAAGATCCA	0.458													16	20					0	0	0.004990	0	0
FGA	2243	broad.mit.edu	37	4	155509998	155509998	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:155509998G>A	uc003iod.1	-	3	369	c.311C>T	c.(310-312)TCG>TTG	p.S104L	FGA_uc003ioe.1_Missense_Mutation_p.S104L|FGA_uc003iof.1_Missense_Mutation_p.S104L	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	104	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGTGGTCAACGAATGAGAATC	0.294													23	75					0	0	0.004656	0	0
RBM46	166863	broad.mit.edu	37	4	155720126	155720126	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:155720126G>A	uc003ioo.2	+	4	985	c.812G>A	c.(811-813)AGA>AAA	p.R271K	RBM46_uc011cim.1_Missense_Mutation_p.R271K|RBM46_uc003iop.1_Missense_Mutation_p.R271K	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	271	RRM 3.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AAGAAACTTAGAGATTATGCT	0.353													13	8					0	0	0.004007	0	0
CPE	1363	broad.mit.edu	37	4	166385634	166385634	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:166385634G>A	uc003irg.3	+	2	677	c.400G>A	c.(400-402)GAA>AAA	p.E134K		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	134					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTATGCAACGAATACCAGAA	0.473											OREG0016390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	13					0	0	0.004007	0	0
TLL1	7092	broad.mit.edu	37	4	166964482	166964482	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:166964482C>T	uc003irh.1	+	12	2082	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S	TLL1_uc011cjn.1_Missense_Mutation_p.P479S|TLL1_uc011cjo.1_Missense_Mutation_p.P303S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	479	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCCCAATTATCCTGATGACTA	0.423													32	29					0	0	0.012213	0	0
TLL1	7092	broad.mit.edu	37	4	166999163	166999163	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:166999163C>T	uc003irh.1	+	18	3070	c.2423C>T	c.(2422-2424)CCT>CTT	p.P808L	TLL1_uc011cjn.1_Missense_Mutation_p.P831L|TLL1_uc011cjo.1_Missense_Mutation_p.P632L	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	808	CUB 4.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGCGCCACTCCTGGCCACCGA	0.473													10	11					0	0	0.006214	0	0
GALNTL6	442117	broad.mit.edu	37	4	173269812	173269812	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:173269812C>T	uc003isv.2	+	5	1261	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	175	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						TAGCAGAAATCATTCTAGTAG	0.373													19	21					0	0	0.018920	0	0
HAND2	9464	broad.mit.edu	37	4	174449922	174449922	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:174449922C>T	uc003ith.1	-	1	1457	c.519G>A	c.(517-519)AAG>AAA	p.K173K	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Missense_Mutation_p.D139N|HAND2_uc010ire.1_Silent_p.K173K	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	173					adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TCACGTCGGTCTTCTTGATCT	0.642													15	15					0	0	0.002450	0	0
GLRA3	8001	broad.mit.edu	37	4	175598368	175598368	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:175598368G>A	uc003ity.1	-	7	1291	c.788C>T	c.(787-789)CCC>CTC	p.P263L	GLRA3_uc003itz.1_Missense_Mutation_p.P263L	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	263	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CAGGAGACTGGGAATGTACAT	0.453													9	6					0	0	0.004482	0	0
ADAM29	11086	broad.mit.edu	37	4	175898956	175898956	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:175898956A>G	uc003iuc.2	+	5	2950	c.2280A>G	c.(2278-2280)CAA>CAG	p.Q760Q	ADAM29_uc003iud.2_Silent_p.Q760Q|ADAM29_uc010irr.2_Silent_p.Q760Q|ADAM29_uc011cki.1_Silent_p.Q760Q	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	760	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|3.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CCCAGAGTCAACCTCCTGTGA	0.567													34	40					0	0	0.004878	0	0
GPM6A	2823	broad.mit.edu	37	4	176622878	176622878	+	Silent	SNP	G	A	A	rs11545191		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:176622878G>A	uc003iuf.2	-	2	882	c.78C>T	c.(76-78)CCC>CCT	p.P26P	GPM6A_uc011ckj.1_Silent_p.P19P|GPM6A_uc003iug.2_Silent_p.P26P|GPM6A_uc003iuh.2_Silent_p.P15P	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	26	Helical; (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		GAGAGGCATAGGGAATGCCCC	0.433													18	39					0	0	0.007413	0	0
ASB5	140458	broad.mit.edu	37	4	177142748	177142748	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:177142748T>G	uc003iuq.1	-	4	404	c.388A>C	c.(388-390)AAT>CAT	p.N130H	ASB5_uc003iup.1_Missense_Mutation_p.N77H	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	130	ANK 2.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GTGATTGCATTTACCTAAACC	0.428													9	22					0	0	0.004482	0	0
VEGFC	7424	broad.mit.edu	37	4	177608419	177608419	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:177608419C>T	uc003ius.1	-	6	1497	c.1067G>A	c.(1066-1068)GGA>GAA	p.G356E		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	356	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|4.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GGCACATTTTCCAGGATTTAG	0.438													50	79					0	0	0.014410	0	0
VEGFC	7424	broad.mit.edu	37	4	177609040	177609040	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:177609040C>T	uc003ius.1	-	5	1176	c.746G>A	c.(745-747)TGG>TAG	p.W249*		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	249					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GTGATTATTCCACATGTAATT	0.463													21	30					0	0	0.018920	0	0
ODZ3	55714	broad.mit.edu	37	4	183714756	183714757	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:183714756_183714757CT>TA	uc003ivd.1	+	25	6968_6969	c.6931_6932CT>TA	c.(6931-6933)CTT>TAT	p.L2311Y		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2311	Extracellular (Potential).|YD 23.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TAGCAATGGGCTTATGCTGAAA	0.421													5	18					0	0	0.004672	0	0
WWC2	80014	broad.mit.edu	37	4	184233602	184233602	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:184233602C>T	uc010irx.2	+	22	3675	c.3493C>T	c.(3493-3495)CGG>TGG	p.R1165W	WWC2_uc003ivk.3_Missense_Mutation_p.R960W|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Missense_Mutation_p.R847W|WWC2_uc003ivn.3_Missense_Mutation_p.R680W|WWC2_uc010irz.2_Missense_Mutation_p.R506W|WWC2_uc003ivo.3_Missense_Mutation_p.R293W	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	1165										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		GAAGGTGCCTCGGCAGGTGCA	0.547													9	42					0	0	0.006214	0	0
CCDC111	201973	broad.mit.edu	37	4	185606756	185606756	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr4:185606756C>T	uc003iwk.2	+	11	1646	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S	CCDC111_uc003iwj.2_Missense_Mutation_p.P404S|CCDC111_uc003iwl.2_Missense_Mutation_p.P405S|CCDC111_uc003iwm.2_Missense_Mutation_p.P276S|CCDC111_uc003iwn.2_Missense_Mutation_p.P145S	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	405					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		CTACTTTTTCCCAGAAGAATT	0.299													19	31					0	0	0.016522	0	0
BRD9	65980	broad.mit.edu	37	5	889228	889228	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:889228C>T	uc003jbq.2	-	5	681	c.514G>A	c.(514-516)GGA>AGA	p.G172R	BRD9_uc003jbl.2_Missense_Mutation_p.G56R|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.G119R|BRD9_uc003jbo.2_Missense_Mutation_p.G56R|BRD9_uc011cmc.1_RNA	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	172	Bromo.						nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			ATTGAATATCCAGGAGCAATT	0.343													6	10					0	0	0.001168	0	0
LPCAT1	79888	broad.mit.edu	37	5	1494891	1494891	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:1494891G>A	uc003jcm.2	-	3	534	c.417C>T	c.(415-417)TTC>TTT	p.F139F		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	139	Lumenal (Potential).|HXXXXD motif.				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		GGATGGCGTCGAAGTAGGACG	0.652													13	35					0	0	0.016723	0	0
IRX1	79192	broad.mit.edu	37	5	3599741	3599742	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:3599741_3599742AG>TA	uc003jde.2	+	2	731_732	c.679_680AG>TA	c.(679-681)AGC>TAC	p.S227Y		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	227						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						CGACCTGGAAAGCATCGACATT	0.649													17	17					0	0	0.004672	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239950	5239950	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:5239950C>T	uc003jdl.2	+	16	2573	c.2435C>T	c.(2434-2436)TCG>TTG	p.S812L	ADAMTS16_uc003jdk.1_Missense_Mutation_p.S812L	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	812	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TACAAATTTTCGGGCACTACT	0.517													35	44					0	0	0.015359	0	0
DNAH5	1767	broad.mit.edu	37	5	13717526	13717526	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:13717526G>A	uc003jfd.2	-	73	12645	c.12603C>T	c.(12601-12603)TTC>TTT	p.F4201F	DNAH5_uc003jfc.2_Silent_p.F369F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4201	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCAGGGCACCGAACTTGCGCC	0.537									Kartagener_syndrome				6	15					0	0	0.003080	0	0
DNAH5	1767	broad.mit.edu	37	5	13829721	13829721	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:13829721G>A	uc003jfd.2	-	38	6384	c.6342C>T	c.(6340-6342)ATC>ATT	p.I2114I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2114	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCACCCTTATGATAATCTGAC	0.473									Kartagener_syndrome				20	38					0	0	0.016522	0	0
DNAH5	1767	broad.mit.edu	37	5	13830773	13830773	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:13830773C>T	uc003jfd.2	-	36	6036	c.5994G>A	c.(5992-5994)GGG>GGA	p.G1998G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1998	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGACGTATTTCCCGAGGCATC	0.488									Kartagener_syndrome				20	25					0	0	0.010504	0	0
DNAH5	1767	broad.mit.edu	37	5	13841876	13841876	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:13841876C>T	uc003jfd.2	-	33	5451	c.5409G>A	c.(5407-5409)GTG>GTA	p.V1803V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1803	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTGGCGAATCACAAGATGCA	0.413									Kartagener_syndrome				17	20					0	0	0.004007	0	0
DNAH5	1767	broad.mit.edu	37	5	13876829	13876829	+	Silent	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:13876829A>T	uc003jfd.2	-	22	3402	c.3360T>A	c.(3358-3360)GTT>GTA	p.V1120V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1120	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TAAGCACAGAAACTAATTTTA	0.383									Kartagener_syndrome				11	26					0	0	0.008291	0	0
TRIO	7204	broad.mit.edu	37	5	14462919	14462919	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:14462919G>A	uc003jff.2	+	36	5558	c.5552G>A	c.(5551-5553)GGG>GAG	p.G1851E	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.G1500E|TRIO_uc003jfi.1_Missense_Mutation_p.G154E	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1851					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TCCTCCTCGGGGATGCAGAGC	0.612													45	46					0	0	0.014410	0	0
MYO10	4651	broad.mit.edu	37	5	16668463	16668463	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:16668463G>A	uc003jft.3	-	40	6466	c.5998C>T	c.(5998-6000)CTC>TTC	p.L2000F	MYO10_uc011cnb.1_Missense_Mutation_p.L629F|MYO10_uc011cnc.1_Missense_Mutation_p.L879F|MYO10_uc011cnd.1_Missense_Mutation_p.L1357F|MYO10_uc011cne.1_Missense_Mutation_p.L1357F|MYO10_uc010itx.2_Missense_Mutation_p.L1622F	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	2000	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						CCAAAAGAGAGGATGTGTTCA	0.537													34	66					0	0	0.012213	0	0
CDH12	1010	broad.mit.edu	37	5	21854788	21854789	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:21854788_21854789GG>AA	uc010iuc.2	-	4	1095_1096	c.637_638CC>TT	c.(637-639)CCC>TTC	p.P213F	CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Missense_Mutation_p.P213F	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	213	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						ACCTGTCTTGGGATCAATAGAG	0.396										HNSCC(59;0.17)			5	16					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	5	28927365	28927365	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:28927365G>A	uc003jgz.1	+	1		c.389G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		CAGTTAATGTGAAAACAAGGT	0.448													10	23					0	0	0.013537	0	0
PDZD2	23037	broad.mit.edu	37	5	32074232	32074232	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:32074232C>T	uc003jhl.2	+	18	3408	c.3020C>T	c.(3019-3021)TCC>TTC	p.S1007F	PDZD2_uc003jhm.2_Missense_Mutation_p.S1007F|PDZD2_uc011cnx.1_Missense_Mutation_p.S833F	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1007					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GTCTCAATTTCCTCTTCCAAG	0.577													10	24					0	0	0.006214	0	0
ZFR	51663	broad.mit.edu	37	5	32385739	32385739	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:32385739T>A	uc003jhr.1	-	15	2596	c.2516A>T	c.(2515-2517)AAG>ATG	p.K839M	ZFR_uc010ium.1_5'Flank|ZFR_uc011cny.1_RNA	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	839	DZF.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		TATGTCATACTTCTCAGGGCT	0.313													12	34					0	0	0.010729	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576430	33576430	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:33576430G>A	uc003jia.1	-	19	3864	c.3701C>T	c.(3700-3702)CCC>CTC	p.P1234L	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P1149L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1234	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTCAACTCTGGGTGTCCCAGT	0.572										HNSCC(64;0.19)			30	43					0	0	0.006320	0	0
RAI14	26064	broad.mit.edu	37	5	34811966	34811967	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:34811966_34811967GG>AA	uc003jir.2	+	9	848_849	c.652_653GG>AA	c.(652-654)GGA>AAA	p.G218K	RAI14_uc010iur.2_Missense_Mutation_p.G218K|RAI14_uc011coj.1_Missense_Mutation_p.G218K|RAI14_uc010ius.1_Missense_Mutation_p.G147K|RAI14_uc003jis.2_Missense_Mutation_p.G221K|RAI14_uc003jit.2_Missense_Mutation_p.G218K|RAI14_uc011cok.1_Missense_Mutation_p.G210K	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	218	ANK 7.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					AGATTCTCTTGGATACAATGCC	0.391													18	26					0	0	0.004672	0	0
PRLR	5618	broad.mit.edu	37	5	35070311	35070311	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:35070311C>T	uc003jjm.2	-	7	1130	c.600G>A	c.(598-600)CAG>CAA	p.Q200Q	PRLR_uc003jjg.1_Silent_p.Q200Q|PRLR_uc003jjh.1_Silent_p.Q200Q|PRLR_uc003jji.1_Silent_p.Q129Q|PRLR_uc003jjj.1_Silent_p.Q200Q|PRLR_uc003jjk.1_Silent_p.Q129Q|PRLR_uc003jjl.3_Silent_p.Q99Q|PRLR_uc010iuw.1_Silent_p.Q129Q	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	200	Fibronectin type-III 2.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CAAGGTATTTCTGTCCTGGAT	0.448													12	19					0	0	0.013537	0	0
IL7R	3575	broad.mit.edu	37	5	35857161	35857161	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:35857161G>A	uc003jjs.2	+	1	171	c.82G>A	c.(82-84)GGA>AGA	p.G28R	IL7R_uc011coo.1_Missense_Mutation_p.G28R|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	28	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TGCTCAAAATGGTGAGTCATT	0.353													30	45					0	0	0.013726	0	0
CAPSL	133690	broad.mit.edu	37	5	35910511	35910511	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:35910511C>T	uc003jjt.1	-	3	367	c.272G>A	c.(271-273)GGA>GAA	p.G91E	CAPSL_uc003jju.1_Missense_Mutation_p.G91E	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	91	2 (Potential).|EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TGTTCCATTTCCATCTTTATC	0.373													22	46					0	0	0.014323	0	0
UGT3A1	133688	broad.mit.edu	37	5	35955941	35955941	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:35955941G>A	uc003jjv.1	-	6	1258	c.1101C>T	c.(1099-1101)GTC>GTT	p.V367V	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.V367V|UGT3A1_uc011cor.1_Silent_p.V333V	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	367	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CACCATGAGTGACAAAAAGAC	0.483													27	38					0	0	0.008361	0	0
C7	730	broad.mit.edu	37	5	40945390	40945390	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:40945390C>T	uc003jmh.2	+	7	772	c.658C>T	c.(658-660)CGG>TGG	p.R220W	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	220	MACPF.		R -> Q (in C7D).		complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ATCATCTAGTCGGAAGCGCTC	0.313													11	13					0	0	0.008291	0	0
C7	730	broad.mit.edu	37	5	40958352	40958352	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:40958352G>A	uc003jmh.2	+	11	1592	c.1478G>A	c.(1477-1479)GGG>GAG	p.G493E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	493					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTCCTCGTAGGGAATCAAGCA	0.488													21	25					0	0	0.014323	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058251	41058251	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:41058251C>T	uc003jmj.3	-	7	1160	c.670G>A	c.(670-672)GAA>AAA	p.E224K	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	224							binding			ovary(6)|central_nervous_system(2)	8						CGGAAGTCTTCCCGATGCAGC	0.512													8	14					0	0	0.003080	0	0
C6	729	broad.mit.edu	37	5	41142959	41142959	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:41142959C>T	uc003jmk.2	-	18	2983	c.2773G>A	c.(2773-2775)GAA>AAA	p.E925K	C6_uc003jml.1_Missense_Mutation_p.E925K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	925	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGCAGTATTTCCATCTTCCTG	0.418													19	37					0	0	0.016522	0	0
ITGA2	3673	broad.mit.edu	37	5	52386420	52386420	+	Silent	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:52386420C>A	uc003joy.2	+	30	3680	c.3537C>A	c.(3535-3537)CTC>CTA	p.L1179L	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Silent_p.L1103L|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	1179	Cytoplasmic (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				CCACAGAGCTCAGTAGCTGAA	0.423													7	14					0.000157383	0.000179128	0.003080	1	0
GAPT	202309	broad.mit.edu	37	5	57790482	57790482	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:57790482G>A	uc003jro.1	+	3	513	c.119G>A	c.(118-120)CGA>CAA	p.R40Q		NM_152687	NP_689900	Q8N292	GAPT_HUMAN	GRB2-binding adaptor protein, transmembrane	40					B cell activation	integral to membrane|plasma membrane					0						GTTGCCACACGATTTACCTTA	0.433													12	20					0	0	0.016723	0	0
TAF9	6880	broad.mit.edu	37	5	68660828	68660828	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:68660828C>T	uc003jwc.1	-	2	1069	c.737G>A	c.(736-738)AGA>AAA	p.R246K	TAF9_uc003jwa.2_Intron|TAF9_uc003jwb.2_Intron|TAF9_uc003jwd.1_Missense_Mutation_p.R246K|TAF9_uc003jwe.1_Missense_Mutation_p.R246K|TAF9_uc003jwf.1_Missense_Mutation_p.R246K	NM_003187	NP_003178	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	246					histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		ttcaCGTTTTCTTTTCAATGC	0.254													13	35					0	0	0.016723	0	0
ZNF366	167465	broad.mit.edu	37	5	71756150	71756150	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:71756150G>A	uc003kce.1	-	2	1360	c.1174C>T	c.(1174-1176)CAG>TAG	p.Q392*		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CAGTTGTACTGGATGGGGCCC	0.612													8	22					0	0	0.006214	0	0
SPZ1	84654	broad.mit.edu	37	5	79616920	79616920	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:79616920G>A	uc003kgn.2	+	1	1131	c.886G>A	c.(886-888)GAA>AAA	p.E296K	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	296					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		GCCAAATAATGAAGTGTCGGC	0.418													19	29					0	0	0.008871	0	0
C5orf36	285600	broad.mit.edu	37	5	93859772	93859772	+	Missense_Mutation	SNP	C	T	T	rs147120237		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:93859772C>T	uc011cuk.1	-	4	420	c.163G>A	c.(163-165)GAA>AAA	p.E55K	C5orf36_uc003kkp.2_Missense_Mutation_p.E55K	NM_001145678	NP_001139150	Q8IV33	K0825_HUMAN	hypothetical protein LOC285600 isoform 1	55											0		all_cancers(142;2.12e-08)|all_epithelial(76;5.95e-11)|all_lung(232;0.000996)|Lung NSC(167;0.0108)|Ovarian(174;0.0218)|Colorectal(57;0.0329)|Breast(839;0.214)|Lung SC(612;0.236)		all cancers(79;3.96e-19)		TTGTTAATTTCGGACTGTATC	0.323													6	21					0	0	0.001984	0	0
PCSK1	5122	broad.mit.edu	37	5	95728851	95728851	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:95728851T>A	uc003kls.1	-	14	2322	c.2116A>T	c.(2116-2118)AAG>TAG	p.K706*	PCSK1_uc010jbi.1_Nonsense_Mutation_p.K396*	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	706					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTGTTCAGCTTTTCCAGGGCT	0.403													35	78					0	0	0.005524	0	0
PCSK1	5122	broad.mit.edu	37	5	95735873	95735873	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:95735873C>T	uc003kls.1	-	10	1420	c.1214G>A	c.(1213-1215)CGA>CAA	p.R405Q	PCSK1_uc010jbi.1_Missense_Mutation_p.R95Q	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	405	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGCATATCTCGCCAGGTGAG	0.478													28	31					0	0	0.009535	0	0
RIOK2	55781	broad.mit.edu	37	5	96503501	96503501	+	Missense_Mutation	SNP	C	T	T	rs112201709		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:96503501C>T	uc003kmz.2	-	8	1177	c.1067G>A	c.(1066-1068)CGG>CAG	p.R356Q	RIOK2_uc003kna.3_Missense_Mutation_p.R356Q	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	356	Protein kinase.						ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		TAGACAGTTCCGTTCACTTTC	0.408													26	60					0	0	0.006320	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101816074	101816074	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:101816074G>A	uc003knn.2	-	2	595	c.423C>T	c.(421-423)ACC>ACT	p.T141T	SLCO6A1_uc003kno.2_Silent_p.T141T|SLCO6A1_uc003knp.2_Silent_p.T141T|SLCO6A1_uc003knq.2_Silent_p.T141T	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	141	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		ACTTCTCAATGGTTTTCAGTT	0.338													29	37					0	0	0.005443	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834509	101834509	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:101834509C>T	uc003knn.2	-	1	212	c.40G>A	c.(40-42)GAA>AAA	p.E14K	SLCO6A1_uc003kno.2_Missense_Mutation_p.E14K|SLCO6A1_uc003knp.2_Missense_Mutation_p.E14K|SLCO6A1_uc003knq.2_Missense_Mutation_p.E14K	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	14	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CTTGAGACTTCATCCTGGCTC	0.687													51	66					0	0	0.014410	0	0
CAMK4	814	broad.mit.edu	37	5	110710562	110710562	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:110710562C>T	uc011cvj.1	+	4	354	c.255C>T	c.(253-255)ATC>ATT	p.I85I	CAMK4_uc003kpf.2_Silent_p.I85I|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	85	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACAAAAAAATCGTAAGAACTG	0.378													17	26					0	0	0.006122	0	0
APC	324	broad.mit.edu	37	5	112175106	112175106	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:112175106C>T	uc010jby.2	+	16	4195	c.3815C>T	c.(3814-3816)TCA>TTA	p.S1272L	APC_uc011cvt.1_Missense_Mutation_p.S1254L|APC_uc003kpz.3_Missense_Mutation_p.S1272L|APC_uc003kpy.3_Missense_Mutation_p.S1272L|APC_uc010jbz.2_Missense_Mutation_p.S989L|APC_uc010jca.2_Missense_Mutation_p.S572L	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1272	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.S1272fs*16(1)|p.S1272*(1)|p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		ATATGTTTTTCAAGATGTAGT	0.373		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			15	21					0	0	0.004007	0	0
AQPEP	206338	broad.mit.edu	37	5	115320281	115320281	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115320281G>A	uc003kro.2	+	3	1017	c.853G>A	c.(853-855)GAA>AAA	p.E285K	AQPEP_uc003krp.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	285	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GTCTGAAAAAGAAGATGTGAA	0.363													9	12					0	0	0.010729	0	0
AQPEP	206338	broad.mit.edu	37	5	115335491	115335491	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115335491T>A	uc003kro.2	+	7	1571	c.1407T>A	c.(1405-1407)AAT>AAA	p.N469K	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	469	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TTTTACATAATATCCTCAGAG	0.378													14	15					0	0	0.016723	0	0
AQPEP	206338	broad.mit.edu	37	5	115348125	115348125	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115348125C>T	uc003kro.2	+	15	2466	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	768	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AACTATAATTCGTGAAAATGT	0.289													15	41					0	0	0.004007	0	0
COMMD10	51397	broad.mit.edu	37	5	115469813	115469813	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115469813C>T	uc003krt.1	+	5	471	c.448C>T	c.(448-450)CAA>TAA	p.Q150*		NM_016144	NP_057228	Q9Y6G5	COMDA_HUMAN	COMM domain containing 10	150	COMM.						protein binding			ovary(1)	1		all_cancers(142;0.0834)|all_epithelial(76;0.00314)|Prostate(80;0.0102)|Ovarian(225;0.232)		OV - Ovarian serous cystadenocarcinoma(64;4.3e-07)|Epithelial(69;8.06e-07)|all cancers(49;4.06e-05)		TCACTCTGCTCAAGCAAAACT	0.398													10	21					0	0	0.006214	0	0
SEMA6A	57556	broad.mit.edu	37	5	115782558	115782558	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115782558G>A	uc010jck.2	-	19	3553	c.2844C>T	c.(2842-2844)TCC>TCT	p.S948S	SEMA6A_uc003krx.3_Silent_p.S965S|SEMA6A_uc011cwe.1_Silent_p.S327S|SEMA6A_uc003krv.3_Silent_p.S375S|SEMA6A_uc003krw.3_Silent_p.S425S|SEMA6A_uc010jcj.2_Silent_p.S492S	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	948	Cytoplasmic (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		TCTGGTTTCTGGAGAGGTGAG	0.592													21	23					0	0	0.012319	0	0
SEMA6A	57556	broad.mit.edu	37	5	115782984	115782984	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:115782984C>T	uc010jck.2	-	19	3127	c.2418G>A	c.(2416-2418)CGG>CGA	p.R806R	SEMA6A_uc003krx.3_Silent_p.R823R|SEMA6A_uc011cwe.1_Silent_p.R185R|SEMA6A_uc003krv.3_Silent_p.R233R|SEMA6A_uc003krw.3_Silent_p.R283R|SEMA6A_uc010jcj.2_Silent_p.R350R	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	806	Cytoplasmic (Potential).|Pro-rich.				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		TGGGGGAGGCCCGCAGGGGCA	0.652													16	25					0	0	0.003163	0	0
FAM170A	340069	broad.mit.edu	37	5	118970427	118970427	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:118970427G>A	uc003ksm.2	+	3	1194	c.984G>A	c.(982-984)AGG>AGA	p.R328R	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Silent_p.R328R|FAM170A_uc003kso.2_Silent_p.R281R	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	328						intracellular	zinc ion binding			skin(1)	1						CAAAGGACAGGAAGTGAGCAA	0.483													12	34					0	0	0.016723	0	0
SLC12A2	6558	broad.mit.edu	37	5	127474309	127474309	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:127474309T>G	uc003kus.2	+	8	1593	c.1429T>G	c.(1429-1431)TTT>GTT	p.F477V	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Missense_Mutation_p.F477V	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	477	Extracellular (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	TAATGAGAACTTTGGGCCCGA	0.363													13	35					0	0	0.002450	0	0
SLC12A2	6558	broad.mit.edu	37	5	127474346	127474346	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:127474346C>T	uc003kus.2	+	8	1630	c.1466C>T	c.(1465-1467)TCT>TTT	p.S489F	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Missense_Mutation_p.S489F	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	489	Helical; (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	ACTTTCTTTTCTGTATTTGCC	0.358													12	31					0	0	0.016723	0	0
FBN2	2201	broad.mit.edu	37	5	127714575	127714575	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:127714575C>T	uc003kuu.2	-	12	2051	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	FBN2_uc003kuv.2_Missense_Mutation_p.E505K	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	538	EGF-like 7; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GATGTGCATTCATCAACATCT	0.378													29	43					0	0	0.015359	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128862105	128862105	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:128862105G>A	uc003kvb.1	+	4	1024	c.1024G>A	c.(1024-1026)GGA>AGA	p.G342R	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	342	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TTCCTATCATGGAGCAGATGC	0.393													12	32					0	0	0.013537	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130840383	130840383	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:130840383A>G	uc003kvn.1	-	11	1396	c.1190T>C	c.(1189-1191)GTT>GCT	p.V397A	RAPGEF6_uc003kvp.1_Missense_Mutation_p.V447A|RAPGEF6_uc003kvo.1_Missense_Mutation_p.V397A|RAPGEF6_uc010jdi.1_Missense_Mutation_p.V397A|RAPGEF6_uc010jdj.1_Missense_Mutation_p.V397A|RAPGEF6_uc003kvq.2_Missense_Mutation_p.V114A|RAPGEF6_uc003kvr.2_Missense_Mutation_p.V397A|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.V397A	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	397	cNMP.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		ATGTACCATAACAATTTCTCC	0.398													21	28					0	0	0.014323	0	0
ACSL6	23305	broad.mit.edu	37	5	131290047	131290047	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:131290047G>A	uc010jdo.1	-	21	2057	c.1974C>T	c.(1972-1974)ATC>ATT	p.I658I	ACSL6_uc003kvv.1_Intron|ACSL6_uc003kvx.1_Silent_p.I683I|ACSL6_uc003kvy.1_Silent_p.I683I|ACSL6_uc003kwb.2_Silent_p.I648I|ACSL6_uc003kvz.1_Silent_p.I583I|ACSL6_uc003kwa.1_Silent_p.I669I|ACSL6_uc003kvw.1_Silent_p.I304I|ACSL6_uc010jdn.1_Silent_p.I673I	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	658	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGTCAGAATGGATGTGAATGG	0.363													10	14					0	0	0.008291	0	0
SEC24A	10802	broad.mit.edu	37	5	134028336	134028336	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:134028336G>A	uc003kzs.2	+	12	2056	c.1768G>A	c.(1768-1770)GAA>AAA	p.E590K	SEC24A_uc011cxu.1_Missense_Mutation_p.E354K	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	590					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AAACTTAAATGAAAGTAAAGA	0.244													13	24					0	0	0.004990	0	0
TGFBI	7045	broad.mit.edu	37	5	135382121	135382121	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:135382121G>A	uc003lbf.3	+	4	557	c.396G>A	c.(394-396)ATG>ATA	p.M132I	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	132	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGCCTGAGATGGAGGGGCCCG	0.622													8	9					0	0	0.004482	0	0
TRPC7	57113	broad.mit.edu	37	5	135692539	135692539	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:135692539G>A	uc003lbn.1	-	1	537	c.534C>T	c.(532-534)ATC>ATT	p.I178I	TRPC7_uc010jef.1_Silent_p.I170I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I170I|TRPC7_uc010jei.1_Silent_p.I170I|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	179	Cytoplasmic (Potential).|ANK 4.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGATGTGCACGATCTCATACT	0.607													40	99					0	0	0.007835	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167364	140167364	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140167364C>T	uc003lhb.2	+	1	1489	c.1489C>T	c.(1489-1491)CGG>TGG	p.R497W	PCDHA1_uc003lha.2_Missense_Mutation_p.R497W|PCDHA1_uc003lgz.2_Missense_Mutation_p.R497W	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	497	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGGTGGAACGGCGGGTGGG	0.672													33	49					0	0	0.008740	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250211	140250211	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140250211C>T	uc003lia.2	+	1	2381	c.1523C>T	c.(1522-1524)TCG>TTG	p.S508L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.S508L	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	508	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTACGTGTCGGTGCACGCG	0.701													51	66					0	0	0.014410	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255069	140255069	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140255069C>T	uc003lic.2	+	1	139	c.12C>T	c.(10-12)ATC>ATT	p.I4I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.I4I	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	4					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGATTATCGGACCAAGAG	0.552													7	13					0	0	0.003080	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262784	140262784	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140262784G>A	uc003lif.2	+	1	931	c.931G>A	c.(931-933)GAA>AAA	p.E311K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.E311K|PCDHA13_uc003lid.2_Missense_Mutation_p.E311K	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	311	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTAGATTTCGAAGAAAAGAA	0.378													27	34					0	0	0.004656	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475556	140475556	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140475556C>T	uc003lil.2	+	1	1320	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	PCDHB2_uc003lim.1_Silent_p.F55F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	394	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTTTTTTCTTGAAACCTT	0.493													17	28					0	0	0.006122	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476765	140476765	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140476765C>T	uc003lil.2	+	1	2529	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	PCDHB2_uc003lim.1_Silent_p.F458F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	797	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTTTGAATTCACTTAAGTGT	0.423													31	53					0	0	0.015359	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480851	140480851	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140480851G>A	uc003lio.2	+	1	618	c.618G>A	c.(616-618)CCG>CCA	p.P206P	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	206	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGAGCAGCCGGAACTCAGCT	0.567													18	18					0	0	0.007413	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482344	140482344	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140482344C>T	uc003lio.2	+	1	2111	c.2111C>T	c.(2110-2112)TCG>TTG	p.S704L	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	704	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTTTCGGTGCTCCTG	0.692													70	82					0	0	0.014410	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501662	140501662	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140501662G>A	uc003lip.1	+	1	82	c.82G>A	c.(82-84)GAG>AAG	p.E28K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	28	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTTCGCCTCGAGCCTATTCG	0.517													17	34					0	0	0.007413	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574378	140574378	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140574378C>T	uc003lix.2	+	1	2427	c.2253C>T	c.(2251-2253)TAC>TAT	p.Y751Y		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	751	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCAGAGCTACCAGTATGAGG	0.622													33	55					0	0	0.013726	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594389	140594389	+	Missense_Mutation	SNP	G	A	A	rs143547458		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140594389G>A	uc003lja.1	+	1	881	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	232	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCTACATCGAAGTCCTGGA	0.532													23	129					0	0	0.012213	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605391	140605391	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140605391C>T	uc003ljb.2	+	1	2314	c.2314C>T	c.(2314-2316)CCC>TCC	p.P772S	PCDHB14_uc011dal.1_Missense_Mutation_p.P619S	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	772	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGATTATCCCCAATTTTCA	0.428													16	42					0	0	0.004990	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712561	140712561	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140712561C>T	uc003lji.1	+	1	2310	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	PCDHGA1_uc011dan.1_Silent_p.F770F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	770	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGATTTTCCCCCAGCCCA	0.547													31	58					0	0	0.015359	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725564	140725564	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140725564C>T	uc003ljm.1	+	1	1964	c.1964C>T	c.(1963-1965)TCC>TTC	p.S655F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.S415F|PCDHGA3_uc011dap.1_Missense_Mutation_p.S655F	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	655	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCCTCTCTCCGCCACTGTC	0.706													25	38					0	0	0.008361	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736123	140736123	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140736123C>T	uc003ljq.1	+	1	1356	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.F452F	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	452	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCCACTTTCCCTCATGCTT	0.483													24	49					0	0	0.005443	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736706	140736706	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140736706C>T	uc003ljq.1	+	1	1939	c.1939C>T	c.(1939-1941)CAG>TAG	p.Q647*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Nonsense_Mutation_p.Q647*|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	647	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGGTCGTCCAGGACCATGG	0.657													8	14					0	0	0.004482	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736894	140736894	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140736894G>A	uc003ljq.1	+	1	2127	c.2127G>A	c.(2125-2127)ACG>ACA	p.T709T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Silent_p.T709T|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	709	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTTGTCACGGTGCTGCTAG	0.617													9	14					0	0	0.004482	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774190	140774190	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140774190C>T	uc003lkd.1	+	1	2708	c.1810C>T	c.(1810-1812)CTG>TTG	p.L604L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.L604L	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	604	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAACGCCTGGCTGTCCTACCG	0.697													21	19					0	0	0.003954	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794271	140794271	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140794271C>T	uc003lkl.1	+	1	1529	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.S510F	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	510	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATACATATCCATCAACTCA	0.527													40	68					0	0	0.006230	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798322	140798322	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:140798322G>A	uc003lkn.1	+	1	1041	c.896G>A	c.(895-897)GGA>GAA	p.G299E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.G299E|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	299	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACACTACAGGAAACATTCTA	0.438													7	11					0	0	0.001984	0	0
NR3C1	2908	broad.mit.edu	37	5	142689733	142689733	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:142689733T>G	uc003lmz.2	-	4	1889	c.1397A>C	c.(1396-1398)GAT>GCT	p.D466A	NR3C1_uc003lmy.2_Missense_Mutation_p.D467A|NR3C1_uc003lna.2_Missense_Mutation_p.D466A|NR3C1_uc003lnb.2_Missense_Mutation_p.D466A|NR3C1_uc011dbk.1_Missense_Mutation_p.D69A|NR3C1_uc003lnc.2_Missense_Mutation_p.D466A|NR3C1_uc003lnd.2_Missense_Mutation_p.D466A|NR3C1_uc003lne.2_Missense_Mutation_p.D466A|NR3C1_uc003lnf.2_Missense_Mutation_p.D467A	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	466	NR C4-type.|Nuclear receptor.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	TCGAATTTTATCGATGATGCA	0.358													17	19					0	0	0.004990	0	0
FBXO38	81545	broad.mit.edu	37	5	147820005	147820005	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:147820005A>T	uc003lpf.1	+	20	3309	c.3189A>T	c.(3187-3189)GAA>GAT	p.E1063D	FBXO38_uc003lpg.1_Missense_Mutation_p.E988D|FBXO38_uc003lph.2_Missense_Mutation_p.E818D	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	1063						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTAAATATGAATTCTTCCCTG	0.368													10	25					0	0	0.010729	0	0
SH3TC2	79628	broad.mit.edu	37	5	148407132	148407132	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:148407132G>A	uc003lpu.2	-	11	2315	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Silent_p.L365L|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Silent_p.L268L|SH3TC2_uc010jgx.2_Silent_p.L714L|SH3TC2_uc003lpv.1_Silent_p.L268L|SH3TC2_uc011dbz.1_Silent_p.L606L	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	721							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAGCCAAGGAGCTTGGTTG	0.572													32	38					0	0	0.013726	0	0
IL17B	27190	broad.mit.edu	37	5	148753994	148753994	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:148753994C>T	uc003lqo.2	-	3	531	c.481G>A	c.(481-483)GGG>AGG	p.G161R		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	161					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCAAGGCCCTGTGCGGGGC	0.682													37	35					0	0	0.004878	0	0
ARHGEF37	389337	broad.mit.edu	37	5	149001489	149001489	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:149001489C>T	uc003lra.1	+	9	1263	c.1199C>T	c.(1198-1200)TCG>TTG	p.S400L		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	400	BAR.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						GCACTCAACTCGCTGCTAGTG	0.587													14	28					0	0	0.002450	0	0
RBM22	55696	broad.mit.edu	37	5	150078149	150078149	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:150078149G>A	uc003lst.2	-	4	305	c.183C>T	c.(181-183)GTC>GTT	p.V61V		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	61					protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AACGCATGCGGACTCCAGGGC	0.488													27	48					0	0	0.007291	0	0
CCDC69	26112	broad.mit.edu	37	5	150581166	150581166	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:150581166C>T	uc003ltq.2	-	3	331	c.208G>A	c.(208-210)GAA>AAA	p.E70K	CCDC69_uc010jhu.2_5'UTR|CCDC69_uc011dcq.1_RNA	NM_015621	NP_056436	A6NI79	CCD69_HUMAN	coiled-coil domain containing 69	70	Potential.									ovary(2)	2		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCTTCTTTTCCTCCTCATGT	0.502													19	32					0	0	0.008871	0	0
LARP1	23367	broad.mit.edu	37	5	154181779	154181779	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:154181779C>T	uc003lvp.2	+	11	2358	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	LARP1_uc003lvo.2_Silent_p.I566I|LARP1_uc010jie.1_Silent_p.I438I	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	643							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCAACAAGATCCTCATTGTCA	0.567													29	44					0	0	0.005443	0	0
LARP1	23367	broad.mit.edu	37	5	154185574	154185574	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:154185574C>T	uc003lvp.2	+	15	3109	c.2680C>T	c.(2680-2682)CGT>TGT	p.R894C	LARP1_uc003lvo.2_Missense_Mutation_p.R817C	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	894							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCATAAGTATCGTAGGCGCTG	0.512													34	58					0	0	0.006230	0	0
KIF4B	285643	broad.mit.edu	37	5	154395651	154395651	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:154395651G>A	uc010jih.1	+	1	2392	c.2232G>A	c.(2230-2232)AGG>AGA	p.R744R		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	744	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CTCGAGTGAGGAATTGGCTTG	0.478													13	14					0	0	0.016723	0	0
EBF1	1879	broad.mit.edu	37	5	158223377	158223377	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:158223377G>A	uc010jip.2	-	9	1187	c.885C>T	c.(883-885)TTC>TTT	p.F295F	EBF1_uc011ddw.1_Silent_p.F163F|EBF1_uc011ddx.1_Silent_p.F296F|EBF1_uc003lxl.3_Silent_p.F264F	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	295	IPT/TIG.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCATGGTACCGAATATGACCT	0.433			T	HMGA2	lipoma								16	10					0	0	0.006122	0	0
ATP10B	23120	broad.mit.edu	37	5	160039886	160039886	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:160039886C>T	uc003lym.1	-	18	3547	c.2700G>A	c.(2698-2700)ACG>ACA	p.T900T	ATP10B_uc010jit.1_Silent_p.T217T|ATP10B_uc003lyn.2_Silent_p.T458T	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	900	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGTGGCAATCGTATCTGGAA	0.507													11	14					0	0	0.010729	0	0
GABRA1	2554	broad.mit.edu	37	5	161300146	161300147	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:161300146_161300147CC>AT	uc010jiw.2	+	6	747_748	c.279_280CC>AT	c.(277-282)TTCCGT>TTATGT	p.93_94FR>LC	GABRA1_uc010jix.2_Missense_Mutation_p.93_94FR>LC|GABRA1_uc010jiy.2_Missense_Mutation_p.93_94FR>LC|GABRA1_uc003lyx.3_Missense_Mutation_p.93_94FR>LC|GABRA1_uc010jiz.2_Missense_Mutation_p.93_94FR>LC|GABRA1_uc010jja.2_Missense_Mutation_p.93_94FR>LC|GABRA1_uc010jjb.2_Missense_Mutation_p.93_94FR>LC	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	93_94	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	ATGTATTTTTCCGTCAAAGCTG	0.371													25	48					0	0	0.004672	0	0
ODZ2	57451	broad.mit.edu	37	5	167625870	167625870	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:167625870C>T	uc010jjd.2	+	16	2886	c.2886C>T	c.(2884-2886)ATC>ATT	p.I962I	ODZ2_uc003lzr.3_Silent_p.I739I|ODZ2_uc003lzt.3_Silent_p.I335I|ODZ2_uc010jje.2_Silent_p.I233I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCGACCTGATCGCAAATGGAG	0.557													26	49					0	0	0.006320	0	0
CDHR2	54825	broad.mit.edu	37	5	176004676	176004676	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:176004676C>T	uc003mem.1	+	14	1455	c.1389C>T	c.(1387-1389)GTC>GTT	p.V463V	CDHR2_uc003men.1_Silent_p.V463V	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	463	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACTTCTCCGTCGCCATGGTGA	0.637													27	30					0	0	0.004656	0	0
FLT4	2324	broad.mit.edu	37	5	180050979	180050979	+	Missense_Mutation	SNP	C	T	T	rs139272488		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:180050979C>T	uc003mma.3	-	11	1583	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	FLT4_uc003mlz.3_Missense_Mutation_p.E502K|FLT4_uc003mmb.1_Missense_Mutation_p.E35K|FLT4_uc011dgy.1_Missense_Mutation_p.E502K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	502	Ig-like C2-type 5.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCCAGGCTCTCGATGGGGTTC	0.632									Congenital_Hereditary_Lymphedema				23	48					0	0	0.018920	0	0
OR2V2	285659	broad.mit.edu	37	5	180582422	180582422	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:180582422G>A	uc011dhj.1	+	1	480	c.480G>A	c.(478-480)CAG>CAA	p.Q160Q		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTTGATCCAGATGGTGGTAG	0.483													37	86					0	0	0.015359	0	0
WRNIP1	56897	broad.mit.edu	37	6	2766621	2766621	+	Silent	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:2766621C>G	uc003mtz.2	+	1	956	c.765C>G	c.(763-765)CTC>CTG	p.L255L	WRNIP1_uc003mua.2_Silent_p.L255L	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	255					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TGCGCTCGCTCCTGGAGACCA	0.652													4	2					0	0	0.014758	0	0
WRNIP1	56897	broad.mit.edu	37	6	2785494	2785495	+	Nonsense_Mutation	DNP	TC	AG	AG			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:2785494_2785495TC>AG	uc003mtz.2	+	7	2167_2168	c.1976_1977TC>AG	c.(1975-1977)TTC>TAG	p.F659*	WRNIP1_uc003mua.2_Nonsense_Mutation_p.F634*	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	659					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				GGGGTAGATTTCTTCAAGCAGA	0.5													28	43					0	0	0.004672	0	0
CDYL	9425	broad.mit.edu	37	6	4954232	4954232	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:4954232C>T	uc003mwi.2	+	9	1870	c.1739C>T	c.(1738-1740)TCG>TTG	p.S580L	CDYL_uc003mwj.2_Missense_Mutation_p.S526L|CDYL_uc003mwk.2_Missense_Mutation_p.S291L|CDYL_uc011dhx.1_Missense_Mutation_p.S394L|CDYL_uc011dhy.1_Missense_Mutation_p.S394L	NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	580					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		ATCTGGGGCTCGGCCCAGGGG	0.572													13	16					0	0	0.002450	0	0
DSP	1832	broad.mit.edu	37	6	7584736	7584736	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:7584736G>A	uc003mxp.1	+	24	7520	c.7241G>A	c.(7240-7242)GGA>GAA	p.G2414E	DSP_uc003mxq.1_Missense_Mutation_p.G1815E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2414	Plectin 11.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GATACCAAAGGATTTTTTGAC	0.408													23	57					0	0	0.014323	0	0
GCM2	9247	broad.mit.edu	37	6	10874455	10874455	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:10874455G>A	uc003mzn.3	-	5	1366	c.1294C>T	c.(1294-1296)CCT>TCT	p.P432S	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	432					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GTCACCGGAGGACCCCAGGGT	0.537													11	27					0	0	0.010729	0	0
JARID2	3720	broad.mit.edu	37	6	15496885	15496885	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:15496885G>A	uc003nbj.2	+	7	1673	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	JARID2_uc011diu.1_Missense_Mutation_p.E341K|JARID2_uc011div.1_Missense_Mutation_p.E305K|JARID2_uc011diw.1_Missense_Mutation_p.E439K	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	477					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				GGCCCCGGCCGAGAGAGGTCT	0.677													8	27					0	0	0.004482	0	0
DTNBP1	84062	broad.mit.edu	37	6	15651588	15651589	+	Missense_Mutation	DNP	AA	CC	CC			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:15651588_15651589AA>CC	uc003nbm.2	-	3	287_288	c.116_117TT>GG	c.(115-117)GTT>GGG	p.V39G	DTNBP1_uc003nbl.2_5'UTR|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_Intron|DTNBP1_uc003nbp.2_Missense_Mutation_p.V39G|DTNBP1_uc010jph.2_Missense_Mutation_p.V26G	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	39					actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			GCAAAAATGGAACAGTCCTGCC	0.322									Hermansky-Pudlak_syndrome				24	93					0	0	0.004672	0	0
FAM65B	9750	broad.mit.edu	37	6	24848352	24848352	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:24848352G>A	uc003neo.1	-	12	1154	c.978C>T	c.(976-978)TCC>TCT	p.S326S	FAM65B_uc011djs.1_Silent_p.S355S|FAM65B_uc011dju.1_Silent_p.S360S|FAM65B_uc003nep.2_Silent_p.S326S|FAM65B_uc011djt.1_Silent_p.S326S	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	326					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						CAGCGCCTGAGGATGCGGTCA	0.527													10	15					0	0	0.008291	0	0
HIST1H2BO	8348	broad.mit.edu	37	6	27861614	27861614	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:27861614C>T	uc003nkc.1	+	1	412	c.374C>T	c.(373-375)TCC>TTC	p.S125F	HIST1H2AM_uc003nkb.1_5'Flank	NM_003527	NP_003518	P23527	H2B1O_HUMAN	histone cluster 1, H2bo	125					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TACACCAGCTCCAAGTGAGCT	0.597													14	37					0	0	0.002450	0	0
SCAND3	114821	broad.mit.edu	37	6	28540229	28540229	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:28540229C>T	uc003nlo.2	-	4	4055	c.3437G>A	c.(3436-3438)AGA>AAA	p.R1146K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1146					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tgtagaaattctgtttttcca	0													19	48					0	0	0.007413	0	0
OR2B3	442184	broad.mit.edu	37	6	29054298	29054298	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:29054298G>A	uc003nlx.2	-	1	793	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						AATCATGTGGGACCCACATGT	0.453													11	24					0	0	0.008291	0	0
OR10C1	442194	broad.mit.edu	37	6	29408399	29408399	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:29408399G>A	uc011dlp.1	+	1	607	c.607G>A	c.(607-609)GCC>ACC	p.A203T	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGGCAACAGCCCTCCTCAT	0.582													37	121					0	0	0.006999	0	0
OR2H2	7932	broad.mit.edu	37	6	29556430	29556430	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:29556430G>A	uc003nmr.1	+	1	748	c.709G>A	c.(709-711)GGG>AGG	p.G237R	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	237	Helical; Name=6; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAAAGCTTTTGGGACCTGCTC	0.532													16	48					0	0	0.008871	0	0
HLA-G	3135	broad.mit.edu	37	6	29797630	29797630	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:29797630C>T	uc003nnw.2	+	6	1111	c.933C>T	c.(931-933)ATC>ATT	p.I311I	HLA-G_uc011dmb.1_Silent_p.I283I|HLA-G_uc003raj.3_Silent_p.I316I|HLA-G_uc003nnz.3_Silent_p.I219I|HLA-G_uc010jrn.2_Silent_p.I127I|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_RNA	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	311	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						TCATGGGTATCGTTGCTGGCC	0.582													20	52					0	0	0.007413	0	0
BAT2	7916	broad.mit.edu	37	6	31600013	31600013	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:31600013C>T	uc003nvb.3	+	16	3812	c.3563C>T	c.(3562-3564)CCA>CTA	p.P1188L	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P1188L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1188	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						TGGAGCCCTCCAGCCAAGTCT	0.642													8	26					0	0	0.004482	0	0
MSH5	4439	broad.mit.edu	37	6	31726896	31726896	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:31726896C>T	uc003nwv.1	+	16	1428	c.1349C>T	c.(1348-1350)CCC>CTC	p.P450L	MSH5_uc003nwt.1_Missense_Mutation_p.P467L|MSH5_uc003nwu.1_Missense_Mutation_p.P450L|MSH5_uc003nww.1_Missense_Mutation_p.P450L|MSH5_uc003nwx.1_Missense_Mutation_p.P467L|MSH5_uc011dof.1_Missense_Mutation_p.P149L|MSH5_uc003nwy.1_Missense_Mutation_p.P124L|MSH5_uc003nwz.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	450					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CTTTCTATTCCCCGCCTGCCT	0.498								Direct_reversal_of_damage|MMR					151	424					0	0	0.014410	0	0
CFB	629	broad.mit.edu	37	6	31901498	31901498	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:31901498G>A	uc011dor.1	+	3	632	c.368G>A	c.(367-369)GGG>GAG	p.G123E	C2_uc003nyc.2_Missense_Mutation_p.G17S|C2_uc011doo.1_Missense_Mutation_p.G17S|C2_uc011dop.1_Missense_Mutation_p.G62E|C2_uc003nye.3_Missense_Mutation_p.G185E|C2_uc003nyf.2_Missense_Mutation_p.G185E|C2_uc010jtk.2_Missense_Mutation_p.G53E|C2_uc011doq.1_Missense_Mutation_p.G156E|C2_uc003nyg.2_Missense_Mutation_p.G53E	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	199	Sushi 3.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GTGCTCACGGGGTCTTCGGAG	0.642													68	232					0	0	0.014410	0	0
STK19	8859	broad.mit.edu	37	6	31940127	31940127	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:31940127C>T	uc003nyv.2	+	2	397	c.269C>T	c.(268-270)CCT>CTT	p.P90L	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.P47L|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.P90L|STK19_uc011dox.1_Missense_Mutation_p.P47L|STK19_uc003nyw.2_Missense_Mutation_p.P90L|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	90						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						CCGGAAGACCCTATTTTCAGG	0.577													39	108					0	0	0.009718	0	0
ATF6B	1388	broad.mit.edu	37	6	32085144	32085144	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:32085144G>A	uc003nzn.2	-	14	1603	c.1570C>T	c.(1570-1572)CAG>TAG	p.Q524*	TNXB_uc010jts.1_5'UTR|ATF6B_uc003nzm.1_Nonsense_Mutation_p.Q97*|ATF6B_uc003nzo.2_Nonsense_Mutation_p.Q521*|ATF6B_uc003nzp.1_Nonsense_Mutation_p.Q213*	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	524	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGGCCTCTCTGGTGGCGCTGG	0.617													41	131					0	0	0.013114	0	0
FKBPL	63943	broad.mit.edu	37	6	32096838	32096838	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:32096838G>A	uc003nzr.2	-	2	990	c.720C>T	c.(718-720)CTC>CTT	p.L240L	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	240	TPR 1.				response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						GTAAAGTCAGGAGCAGCCGAA	0.592													119	376					0	0	0.014410	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32714034	32714034	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:32714034C>T	uc003obx.2	+	4	689	c.631C>T	c.(631-633)CCT>TCT	p.P211S		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	211	Extracellular (Potential).|Connecting peptide.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GATTCCAGCCCCTATGTCAGA	0.577													31	97					0	0	0.008361	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905121	32905121	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:32905121C>T	uc003ocl.1	-	3	683	c.450G>A	c.(448-450)AGG>AGA	p.R150R	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Silent_p.R19R|HLA-DMB_uc010jue.1_Silent_p.R19R|HLA-DMB_uc010juf.1_Silent_p.R19R|HLA-DMB_uc011dql.1_Silent_p.R150R	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	150	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						TCCCGTTCTTCCTCCACGTGA	0.537													28	70					0	0	0.008361	0	0
COL11A2	1302	broad.mit.edu	37	6	33143840	33143840	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:33143840C>T	uc003ocx.1	-	29	2449	c.2221G>A	c.(2221-2223)GAT>AAT	p.D741N	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.D655N|COL11A2_uc003ocz.1_Missense_Mutation_p.D634N	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	741	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGAAAGCCATCCTCACCCTGA	0.547													41	109					0	0	0.009718	0	0
TAPBP	6892	broad.mit.edu	37	6	33281529	33281529	+	Silent	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:33281529T>G	uc003odx.1	-	2	321	c.150A>C	c.(148-150)GGA>GGC	p.G50G	TAPBP_uc010jus.1_Silent_p.G50G|TAPBP_uc003ody.2_Silent_p.G50G|TAPBP_uc003odz.2_Silent_p.G50G|TAPBP_uc010jut.1_Silent_p.G50G|TAPBP_uc011drc.1_Silent_p.G50G	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	50	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						GTTCCCCCGGTCCCTGGCGCA	0.672													11	45					0	0	0.010729	0	0
ITPR3	3710	broad.mit.edu	37	6	33656078	33656078	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:33656078C>T	uc011drk.1	+	48	6657	c.6438C>T	c.(6436-6438)TTC>TTT	p.F2146F	ITPR3_uc003oey.2_Silent_p.F233F	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	2146	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						TCTGCCAGTTCCTGACGGAGG	0.612													20	56					0	0	0.014323	0	0
GRM4	2914	broad.mit.edu	37	6	34008342	34008342	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:34008342C>T	uc003oir.3	-	6	1522	c.1352G>A	c.(1351-1353)CGA>CAA	p.R451Q	GRM4_uc011dsn.1_Missense_Mutation_p.R404Q|GRM4_uc010jvh.2_Missense_Mutation_p.R451Q|GRM4_uc010jvi.2_Missense_Mutation_p.R143Q|GRM4_uc003oio.2_Missense_Mutation_p.R143Q|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.R311Q|GRM4_uc003oiq.2_Missense_Mutation_p.R318Q|GRM4_uc011dsm.1_Missense_Mutation_p.R282Q	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	451	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GTTGACGTTTCGGATGTACTT	0.662													18	10					0	0	0.006122	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34825582	34825582	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:34825582T>C	uc003oju.3	+	13	1889	c.1655T>C	c.(1654-1656)TTT>TCT	p.F552S	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_5'Flank	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	552										ovary(3)	3						GGAAACCTCTTTTGCCTGGAT	0.433													60	46					0	0	0.014410	0	0
ZNF76	7629	broad.mit.edu	37	6	35259508	35259508	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:35259508C>T	uc003oki.1	+	9	1130	c.925C>T	c.(925-927)CAC>TAC	p.H309Y	ZNF76_uc011dsy.1_Missense_Mutation_p.H309Y|ZNF76_uc011dsz.1_Missense_Mutation_p.H309Y|ZNF76_uc003okj.1_Missense_Mutation_p.H309Y	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	309	C2H2-type 5.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTGCGCATCCACACAGGTGG	0.622													10	16					0	0	0.006214	0	0
CLPS	1208	broad.mit.edu	37	6	35764997	35764997	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:35764997C>T	uc003ole.1	-	1	106	c.69G>A	c.(67-69)GGG>GGA	p.G23G	CLPS_uc003olf.1_Silent_p.G23G	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	23					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						TGATAATGATCCCCCGGGGGC	0.592													15	111					0	0	0.006122	0	0
PNPLA1	285848	broad.mit.edu	37	6	36275387	36275387	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:36275387A>T	uc010jwf.2	+	8	1493	c.1493A>T	c.(1492-1494)AAC>ATC	p.N498I	PNPLA1_uc003olw.1_Missense_Mutation_p.N403I|PNPLA1_uc010jwe.1_Missense_Mutation_p.N412I	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	498					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						GAAGACTCAAACTGGGTGAAT	0.493													18	48					0	0	0.007413	0	0
FGD2	221472	broad.mit.edu	37	6	36979529	36979529	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:36979529C>T	uc010jwp.1	+	4	597	c.426C>T	c.(424-426)TTC>TTT	p.F142F	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	142	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GCAAGGCCTTCCCAGAGGATG	0.577													21	57					0	0	0.008871	0	0
DNAH8	1769	broad.mit.edu	37	6	38718300	38718300	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:38718300A>G	uc003ooe.1	+	7	1291	c.691A>G	c.(691-693)AAA>GAA	p.K231E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAATGAATCCAAAGATAATGT	0.299													15	42					0	0	0.008871	0	0
DNAH8	1769	broad.mit.edu	37	6	38893862	38893862	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:38893862G>A	uc003ooe.1	+	72	10943	c.10343G>A	c.(10342-10344)GGA>GAA	p.G3448E	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGATTACCAGGAGATGATCTC	0.418													74	68					0	0	0.014410	0	0
UNC5CL	222643	broad.mit.edu	37	6	41002446	41002446	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:41002446G>A	uc003opi.2	-	2	457	c.368C>T	c.(367-369)TCC>TTC	p.S123F	UNC5CL_uc010jxe.1_Missense_Mutation_p.S123F	NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	123	ZU5.|Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GATGAGCAAGGAGATGCCTGT	0.398													27	57					0	0	0.004656	0	0
PRPH2	5961	broad.mit.edu	37	6	42689950	42689950	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:42689950C>T	uc003osk.2	-	1	409	c.123G>A	c.(121-123)CTG>CTA	p.L41L		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	41	Helical; (Potential).				cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			GTTCAATCTTCAGGAACAGTC	0.498													33	62					0	0	0.009535	0	0
KIAA0240	23506	broad.mit.edu	37	6	42828037	42828037	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:42828037A>G	uc003osn.1	+	11	2443	c.2292A>G	c.(2290-2292)CTA>CTG	p.L764L	KIAA0240_uc011duw.1_Silent_p.L764L|KIAA0240_uc003osp.1_Silent_p.L764L	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	764										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			CTCAGCTCCTAAAAAGGACCC	0.378													35	111					0	0	0.008740	0	0
PPP2R5D	5528	broad.mit.edu	37	6	42978216	42978216	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:42978216G>C	uc003oth.2	+	13	1476	c.1390G>C	c.(1390-1392)GGA>CGA	p.G464R	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.2_Missense_Mutation_p.G432R|PPP2R5D_uc010jyd.2_Missense_Mutation_p.G358R|PPP2R5D_uc011dva.1_Missense_Mutation_p.G313R|PPP2R5D_uc003oti.2_Missense_Mutation_p.G313R|PPP2R5D_uc003otj.2_Missense_Mutation_p.G295R	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	464					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			breast(1)|central_nervous_system(1)	2			Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GACAATCCATGGACTGATCTA	0.463													3	60					0	0	0.014758	0	0
TTBK1	84630	broad.mit.edu	37	6	43223526	43223526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:43223526C>T	uc003ouq.1	+	9	1072	c.793C>T	c.(793-795)CCG>TCG	p.P265S		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	265	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GAAGCACATGCCGTCAGAGTT	0.602													27	57					0	0	0.005443	0	0
ABCC10	89845	broad.mit.edu	37	6	43412002	43412002	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:43412002C>T	uc003ouy.1	+	12	2815	c.2600C>T	c.(2599-2601)GCC>GTC	p.A867V	ABCC10_uc003ouz.1_Missense_Mutation_p.A839V|ABCC10_uc010jyo.1_5'UTR	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	867						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			AAGGAGGGCGCCGTGGCCTTG	0.587													11	20					0	0	0.010729	0	0
RCAN2	10231	broad.mit.edu	37	6	46216487	46216487	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:46216487C>T	uc003oyb.1	-	2	549	c.234G>A	c.(232-234)GGG>GGA	p.G78G	RCAN2_uc003oyc.1_Silent_p.G124G|RCAN2_uc003oyd.1_Silent_p.G124G	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	78					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						TTAATTTTTTCCCTCTGAATT	0.353													4	30					0	0	0.009096	0	0
GPR116	221395	broad.mit.edu	37	6	46828529	46828529	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:46828529C>T	uc003oyo.3	-	16	2591	c.2302G>A	c.(2302-2304)GGG>AGG	p.G768R	GPR116_uc011dwj.1_Missense_Mutation_p.G323R|GPR116_uc011dwk.1_Missense_Mutation_p.G197R|GPR116_uc003oyp.3_Missense_Mutation_p.G626R|GPR116_uc003oyq.3_Missense_Mutation_p.G768R|GPR116_uc010jzi.1_Missense_Mutation_p.G440R	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	768	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CCCAGACTCCCAGGAGAAGAG	0.438													15	29					0	0	0.004007	0	0
CRISP2	7180	broad.mit.edu	37	6	49660530	49660530	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:49660530C>T	uc003ozq.2	-	10	944	c.688G>A	c.(688-690)GAA>AAA	p.E230K	CRISP2_uc003ozl.2_Missense_Mutation_p.E230K|CRISP2_uc003ozn.2_Missense_Mutation_p.E230K|CRISP2_uc003ozr.2_Missense_Mutation_p.E230K|CRISP2_uc003ozo.2_Missense_Mutation_p.E230K|CRISP2_uc003ozm.2_Missense_Mutation_p.E265K|CRISP2_uc003ozp.2_Missense_Mutation_p.E230K	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	230						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTGCACTTTTCCTTGAGTAAC	0.393													23	24					0	0	0.018920	0	0
PGK2	5232	broad.mit.edu	37	6	49754169	49754169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:49754169G>A	uc003ozu.2	-	1	839	c.732C>T	c.(730-732)TTC>TTT	p.F244F		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	244					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GTACCTTAAGGAAGGTATAAG	0.418													33	42					0	0	0.017118	0	0
CRISP1	167	broad.mit.edu	37	6	49803096	49803096	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:49803096C>T	uc003ozw.2	-	8	762	c.683G>A	c.(682-684)GGA>GAA	p.G228E	CRISP1_uc003ozx.2_3'UTR	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	228					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					GTGGTTGCATCCCAGATAATG	0.368													30	51					0	0	0.008361	0	0
FAM83B	222584	broad.mit.edu	37	6	54804969	54804969	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:54804969C>T	uc003pck.2	+	5	1316	c.1200C>T	c.(1198-1200)CTC>CTT	p.L400L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	400										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TGCCATACCTCCTGCTTAATA	0.443													22	43					0	0	0.018920	0	0
FAM83B	222584	broad.mit.edu	37	6	54805524	54805524	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:54805524G>A	uc003pck.2	+	5	1871	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	585										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ACACCCCTACGAATGTACAGC	0.463													23	19					0	0	0.003954	0	0
FAM83B	222584	broad.mit.edu	37	6	54806470	54806470	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:54806470G>A	uc003pck.2	+	5	2817	c.2701G>A	c.(2701-2703)GAG>AAG	p.E901K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	901										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGATTCAAGGGAGATTAATGC	0.468													20	24					0	0	0.012319	0	0
GFRAL	389400	broad.mit.edu	37	6	55216050	55216050	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:55216050G>A	uc003pcm.1	+	5	457	c.371_splice	c.e5-1	p.G124_splice		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor							integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATTGCTTTCAGGATTCAAAGG	0.433													49	87					0	0	0.014410	0	0
BMP5	653	broad.mit.edu	37	6	55638912	55638912	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:55638912C>T	uc003pcq.2	-	4	1674	c.962G>A	c.(961-963)CGA>CAA	p.R321Q	BMP5_uc011dxf.1_Missense_Mutation_p.R321Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	321					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TTGATTTTTTCGTTTGTTGGC	0.478													26	49					0	0	0.004656	0	0
BMP5	653	broad.mit.edu	37	6	55739275	55739275	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:55739275G>A	uc003pcq.2	-	1	1101	c.389C>T	c.(388-390)TCT>TTT	p.S130F	BMP5_uc011dxf.1_Missense_Mutation_p.S130F	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	130					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			AGTCGTCCGAGATAACTGTAT	0.517													15	22					0	0	0.004007	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62757843	62757843	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:62757843C>T	uc003peg.2	-	3	523	c.276G>A	c.(274-276)CAG>CAA	p.Q92Q		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	92	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		CTGTTTCTTCCTGTAGCCTCT	0.373													33	38					0	0	0.017118	0	0
LGSN	51557	broad.mit.edu	37	6	63989956	63989956	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:63989956C>T	uc003peh.2	-	4	1534	c.1500G>A	c.(1498-1500)GAG>GAA	p.E500E	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	500					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	ATTTATTTCTCTCTGCAGCTA	0.328													16	27					0	0	0.004007	0	0
EYS	346007	broad.mit.edu	37	6	66112428	66112428	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:66112428G>A	uc011dxu.1	-	7	1665	c.1127C>T	c.(1126-1128)TCA>TTA	p.S376L	EYS_uc003peq.2_Missense_Mutation_p.S376L|EYS_uc003per.1_Missense_Mutation_p.S376L	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	376	EGF-like 5.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						CAAAGGAAATGACTCACATGA	0.284													27	19					0	0	0.006320	0	0
BAI3	577	broad.mit.edu	37	6	69348921	69348921	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:69348921C>T	uc003pev.3	+	3	802	c.354C>T	c.(352-354)TTC>TTT	p.F118F	BAI3_uc010kak.2_Silent_p.F118F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	118	CUB.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGAATGCTTTCGTTTTTCTAC	0.308													12	12					0	0	0.010729	0	0
BAI3	577	broad.mit.edu	37	6	70092801	70092801	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:70092801C>T	uc003pev.3	+	31	4802	c.4354C>T	c.(4354-4356)CGG>TGG	p.R1452W	BAI3_uc010kak.2_Missense_Mutation_p.R1452W|BAI3_uc011dxx.1_Missense_Mutation_p.R658W	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1452	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGACAGATTTCGGGATATACC	0.383													9	10					0	0	0.010729	0	0
COL19A1	1310	broad.mit.edu	37	6	70890237	70890237	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:70890237C>T	uc003pfc.1	+	43	2818	c.2701C>T	c.(2701-2703)CCA>TCA	p.P901S		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	901	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TCCAGGAGTTCCAGGGGAACC	0.453													19	38					0	0	0.018920	0	0
DDX43	55510	broad.mit.edu	37	6	74117749	74117749	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:74117749C>T	uc003pgw.2	+	9	1448	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	368	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						GTGTAGATATCATAATTGCAA	0.328													18	26					0	0	0.008871	0	0
PHIP	55023	broad.mit.edu	37	6	79650681	79650682	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:79650681_79650682GG>AA	uc003pir.2	-	40	5420_5421	c.5194_5195CC>TT	c.(5194-5196)CCT>TTT	p.P1732F	PHIP_uc003piq.2_Missense_Mutation_p.P756F|PHIP_uc011dyp.1_Missense_Mutation_p.P1731F|IRAK1BP1_uc010kbg.1_Intron|PHIP_uc003pio.3_Missense_Mutation_p.P618F	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1732					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		GACACTTGCAGGGACTAGGAGA	0.386													27	43					0	0	0.004672	0	0
DOPEY1	23033	broad.mit.edu	37	6	83872626	83872626	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:83872626G>A	uc003pjs.1	+	38	7340	c.7080G>A	c.(7078-7080)CGG>CGA	p.R2360R	DOPEY1_uc011dyy.1_Silent_p.R2351R|DOPEY1_uc010kbl.1_Silent_p.R2351R|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2360					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		AACTTCTTCGGAAAAGAGCAA	0.383													39	44					0	0	0.011902	0	0
EPHA7	2045	broad.mit.edu	37	6	93982080	93982080	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:93982080G>A	uc003poe.2	-	6	1626	c.1385C>T	c.(1384-1386)TCC>TTC	p.S462F	EPHA7_uc003pof.2_Missense_Mutation_p.S462F|EPHA7_uc011eac.1_Missense_Mutation_p.S462F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	462	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TTCCTGCCAGGAAAGCTCGAC	0.433													38	64					0	0	0.006999	0	0
EPHA7	2045	broad.mit.edu	37	6	94120739	94120739	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:94120739G>A	uc003poe.2	-	3	553	c.312C>T	c.(310-312)TTC>TTT	p.F104F	EPHA7_uc003pof.2_Silent_p.F104F|EPHA7_uc011eac.1_Silent_p.F104F|EPHA7_uc003pog.3_Silent_p.F104F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	104	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCCTCAGGGTGAATTTCAATT	0.423													25	31					0	0	0.018920	0	0
GPR6	2830	broad.mit.edu	37	6	110301029	110301029	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:110301029C>T	uc011eaw.1	+	2	894	c.714C>T	c.(712-714)TTC>TTT	p.F238F	GPR6_uc011eav.1_Silent_p.F253F|GPR6_uc003ptu.2_Silent_p.F238F	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	238	Helical; Name=5; (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		TCATGGTCTTCGGCATCATGC	0.697													3	5					0	0	0.004672	0	0
COL10A1	1300	broad.mit.edu	37	6	116442510	116442510	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:116442510C>T	uc003pwm.2	-	3	865	c.769G>A	c.(769-771)GAA>AAA	p.E257K	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	257	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		GGCCCTCGTTCCCCAGGAGGG	0.592													15	12					0	0	0.004007	0	0
ROS1	6098	broad.mit.edu	37	6	117700253	117700253	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:117700253G>A	uc003pxp.1	-	17	2765	c.2566C>T	c.(2566-2568)CAC>TAC	p.H856Y	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	856	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GTGTACAGGTGAATACATTGA	0.398			T	GOPC|ROS1	glioblastoma|NSCLC								15	10					0	0	0.004007	0	0
THEMIS	387357	broad.mit.edu	37	6	128135035	128135035	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:128135035C>T	uc003qbi.2	-	5	1070	c.751G>A	c.(751-753)GAA>AAA	p.E251K	THEMIS_uc010kfa.2_Missense_Mutation_p.E154K|THEMIS_uc011ebt.1_Missense_Mutation_p.E251K|THEMIS_uc010kfb.2_Missense_Mutation_p.E216K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	251	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCTTTGACTTCGACATCTAGA	0.348													43	14					0	0	0.010771	0	0
LAMA2	3908	broad.mit.edu	37	6	129712665	129712665	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:129712665G>A	uc003qbn.2	+	36	5206	c.5101G>A	c.(5101-5103)GAA>AAA	p.E1701K	LAMA2_uc003qbo.2_Missense_Mutation_p.E1701K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1701	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AAAACTAAATGAAACTCTAGG	0.363													26	21					0	0	0.004656	0	0
C6orf191	253582	broad.mit.edu	37	6	130152523	130152523	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:130152523C>T	uc003qbs.2	-	5	411	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_001010876	NP_001010876	Q5VVB8	CF191_HUMAN	hypothetical protein LOC253582	110	Helical; (Potential).					integral to membrane				large_intestine(1)	1				GBM - Glioblastoma multiforme(226;0.0387)|all cancers(137;0.115)|OV - Ovarian serous cystadenocarcinoma(155;0.131)		AAGGGGAATTCCAACATAACT	0.303													10	6					0	0	0.016723	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762527	130762527	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:130762527G>A	uc003qca.2	+	3	1831	c.960G>A	c.(958-960)AGG>AGA	p.R320R	TMEM200A_uc010kfh.2_Silent_p.R320R|TMEM200A_uc010kfi.2_Silent_p.R320R|TMEM200A_uc003qcb.2_Silent_p.R320R	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	320	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GTAGGTCAAGGAATTTGTCAA	0.428													12	9					0	0	0.010729	0	0
EYA4	2070	broad.mit.edu	37	6	133802709	133802709	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:133802709C>T	uc003qec.3	+	12	1537	c.1079C>T	c.(1078-1080)CCC>CTC	p.P360L	EYA4_uc011ecq.1_Missense_Mutation_p.P306L|EYA4_uc011ecr.1_Missense_Mutation_p.P312L|EYA4_uc003qed.3_Missense_Mutation_p.P360L|EYA4_uc003qee.3_Missense_Mutation_p.P337L|EYA4_uc011ecs.1_Missense_Mutation_p.P366L|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	360					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		AAAAATAATCCCTCCCCGCCT	0.448													34	16					0	0	0.006230	0	0
PDE7B	27115	broad.mit.edu	37	6	136494966	136494966	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:136494966G>A	uc003qgp.2	+	9	1046	c.743G>A	c.(742-744)CGA>CAA	p.R248Q	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.R300Q	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	248	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	CATCACTGGCGATCTACAATT	0.413													13	15					0	0	0.003163	0	0
GRM1	2911	broad.mit.edu	37	6	146480714	146480714	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:146480714G>A	uc010khw.1	+	3	1401	c.931G>A	c.(931-933)GAG>AAG	p.E311K	GRM1_uc010khu.1_Missense_Mutation_p.E311K|GRM1_uc010khv.1_Missense_Mutation_p.E311K|GRM1_uc003qll.2_Missense_Mutation_p.E311K|GRM1_uc011edz.1_Missense_Mutation_p.E311K|GRM1_uc011eea.1_Missense_Mutation_p.E311K	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	311	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CGTCGTGGGCGAGTTCTCACT	0.388													12	9					0	0	0.016723	0	0
ULBP2	80328	broad.mit.edu	37	6	150263263	150263263	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:150263263C>T	uc003qno.2	+	1	128	c.55C>T	c.(55-57)CTG>TTG	p.L19L	ULBP2_uc011eeh.1_Silent_p.L19L|ULBP2_uc010kij.2_Silent_p.L19L	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	19					antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		TCTGCTCCTGCTGTCCGGCTG	0.647													8	3					0	0	0.003080	0	0
RAET1K	646024	broad.mit.edu	37	6	150321297	150321297	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:150321297G>A	uc003qnq.2	-	3		c.922C>T				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						CATGGCTTTGGGTTGGGTTGT	0.552													6	1					0	0	0.001984	0	0
SYNE1	23345	broad.mit.edu	37	6	152763287	152763287	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:152763287G>A	uc010kiw.2	-	31	4533	c.3931C>T	c.(3931-3933)CAC>TAC	p.H1311Y	SYNE1_uc003qot.3_Missense_Mutation_p.H1318Y|SYNE1_uc003qou.3_Missense_Mutation_p.H1311Y|SYNE1_uc010kjb.1_Missense_Mutation_p.H1294Y|SYNE1_uc003qow.2_Missense_Mutation_p.H606Y|SYNE1_uc003qox.1_Missense_Mutation_p.H827Y	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1311	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGCTCCTCGTGGCCTCGGTCA	0.632										HNSCC(10;0.0054)			25	15					0	0	0.018920	0	0
TAGAP	117289	broad.mit.edu	37	6	159457649	159457649	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:159457649G>A	uc003qrz.2	-	10	1738	c.1406C>T	c.(1405-1407)TCT>TTT	p.S469F	TAGAP_uc011eft.1_Missense_Mutation_p.S406F|TAGAP_uc003qsa.2_Missense_Mutation_p.S291F	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	469					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CGAGCTGTCAGAGGACGCGTC	0.577													43	25					0	0	0.009718	0	0
PLG	5340	broad.mit.edu	37	6	161123346	161123346	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:161123346A>G	uc003qtm.3	+	1	73	c.10A>G	c.(10-12)AAG>GAG	p.K4E		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	4					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AATGGAACATAAGGAAGTGGT	0.358													19	20					0	0	0.017118	0	0
PLG	5340	broad.mit.edu	37	6	161135945	161135945	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:161135945A>T	uc003qtm.3	+	6	730	c.667A>T	c.(667-669)AAA>TAA	p.K223*		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	223	Kringle 2.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CATTCCTTCCAAGTAAGTCTC	0.433													8	7					0	0	0.003080	0	0
TTLL2	83887	broad.mit.edu	37	6	167754880	167754880	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:167754880C>T	uc003qvs.1	+	3	1580	c.1492C>T	c.(1492-1494)CAT>TAT	p.H498Y	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	498					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GCAGGATTTTCATCTGTCAAC	0.557													14	8					0	0	0.002450	0	0
SDK1	221935	broad.mit.edu	37	7	4014170	4014170	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:4014170G>A	uc003smx.2	+	13	2126	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	663	Ig-like C2-type 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GGCCCGGCTGGAAGTGATGTG	0.562													5	15					0	0	0.014758	0	0
USP42	84132	broad.mit.edu	37	7	6189901	6189901	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:6189901C>T	uc011jwo.1	+	13	2197	c.2074C>T	c.(2074-2076)CCC>TCC	p.P692S	USP42_uc010kth.1_Missense_Mutation_p.P625S|USP42_uc011jwp.1_Missense_Mutation_p.P692S|USP42_uc011jwq.1_Missense_Mutation_p.P499S|USP42_uc011jwr.1_Missense_Mutation_p.P537S	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	692					cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|ovary(1)|pancreas(1)|breast(1)	5		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)		CTCAGAAAATCCCTTTGCTAA	0.572													8	14					0	0	0.006214	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353													26	69					0	0	0.008361	0	0
THSD7A	221981	broad.mit.edu	37	7	11445927	11445927	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:11445927C>T	uc003ssf.3	-	21	4489	c.4237G>A	c.(4237-4239)GGT>AGT	p.G1413S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1413	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CCGTTGTTACCTGGGCAAGGC	0.418										HNSCC(18;0.044)			44	54					0	0	0.014410	0	0
HDAC9	9734	broad.mit.edu	37	7	18705844	18705844	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:18705844G>A	uc003suh.2	+	11	1508	c.1467G>A	c.(1465-1467)TCG>TCA	p.S489S	HDAC9_uc003sue.2_Silent_p.S489S|HDAC9_uc011jyd.1_Silent_p.S489S|HDAC9_uc003sui.2_Silent_p.S492S|HDAC9_uc003suj.2_Silent_p.S448S|HDAC9_uc011jya.1_Silent_p.S486S|HDAC9_uc003sua.1_Silent_p.S467S|HDAC9_uc011jyb.1_Silent_p.S445S|HDAC9_uc003sud.1_Silent_p.S489S|HDAC9_uc011jyc.1_Silent_p.S448S|HDAC9_uc003suf.1_Silent_p.S520S|HDAC9_uc010kud.1_Silent_p.S492S|HDAC9_uc011jye.1_Silent_p.S461S|HDAC9_uc011jyf.1_Silent_p.S412S|HDAC9_uc010kue.1_Intron	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	489					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AGCTGCTTTCGAAATCTATTG	0.448											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	60					0	0	0.016522	0	0
HDAC9	9734	broad.mit.edu	37	7	18767295	18767295	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:18767295C>T	uc003suh.2	+	12	1856	c.1815C>T	c.(1813-1815)CTC>CTT	p.L605L	HDAC9_uc003sue.2_Silent_p.L605L|HDAC9_uc011jyd.1_Silent_p.L605L|HDAC9_uc003sui.2_Silent_p.L608L|HDAC9_uc003suj.2_Silent_p.L564L|HDAC9_uc003sua.1_Silent_p.L583L|HDAC9_uc010kue.1_Silent_p.L260L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	605					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AACACCGTCTCGTCTCCAGGA	0.592													6	10					0	0	0.001168	0	0
HDAC9	9734	broad.mit.edu	37	7	18875168	18875168	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:18875168G>A	uc003suh.2	+	19	2577	c.2536G>A	c.(2536-2538)GAT>AAT	p.D846N	HDAC9_uc003sue.2_Missense_Mutation_p.D846N|HDAC9_uc011jyd.1_Missense_Mutation_p.D846N|HDAC9_uc003sui.2_Missense_Mutation_p.D849N|HDAC9_uc003suj.2_Missense_Mutation_p.D805N|HDAC9_uc003suk.2_Missense_Mutation_p.D94N	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	846	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCATCGCTATGATGAAGGGAA	0.453													14	22					0	0	0.002450	0	0
ITGB8	3696	broad.mit.edu	37	7	20431110	20431110	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:20431110C>T	uc003suu.2	+	7	1750	c.1045C>T	c.(1045-1047)CAT>TAT	p.H349Y	ITGB8_uc011jyh.1_Missense_Mutation_p.H214Y|ITGB8_uc003sut.2_Missense_Mutation_p.H349Y	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	349	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						AAAACAATTTCATTGGTATAA	0.289													10	18					0	0	0.008291	0	0
DNAH11	8701	broad.mit.edu	37	7	21906166	21906166	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:21906166G>A	uc003svc.2	+	72	11627	c.11596G>A	c.(11596-11598)GAA>AAA	p.E3866K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3866					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GAAGTGGGTAGAATCCGAGTG	0.428									Kartagener_syndrome				24	50					0	0	0.018920	0	0
DNAH11	8701	broad.mit.edu	37	7	21908507	21908507	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:21908507C>T	uc003svc.2	+	74	11917	c.11886C>T	c.(11884-11886)GAC>GAT	p.D3962D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3962	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTACAATTGACTCTGGAAAAT	0.498									Kartagener_syndrome				23	44					0	0	0.005443	0	0
FAM126A	84668	broad.mit.edu	37	7	22985211	22985211	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:22985211A>T	uc003svm.3	-	11	1818	c.1563T>A	c.(1561-1563)GAT>GAA	p.D521E	FAM126A_uc003svn.3_3'UTR	NM_032581	NP_115970	Q9BYI3	HYCCI_HUMAN	family with sequence similarity 126, member A	521						cytoplasm|membrane	signal transducer activity			central_nervous_system(1)	1						TTACTAATTAATCTGTGGACA	0.373													30	29					0	0	0.013726	0	0
JAZF1	221895	broad.mit.edu	37	7	27880369	27880369	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:27880369C>T	uc003szn.2	-	4	744	c.503G>A	c.(502-504)GGG>GAG	p.G168E	JAZF1_uc003szm.2_Missense_Mutation_p.G104E	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	168					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						CTTCTCTTCCCCTCCATTCAT	0.527			T	SUZ12	endometrial stromal tumours								181	274					0	0	0.014410	0	0
BMPER	168667	broad.mit.edu	37	7	34118752	34118752	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:34118752C>T	uc011kap.1	+	12	1476	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	454	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CGCCACACTTCCACATCGACC	0.652													18	42					0	0	0.007413	0	0
HERPUD2	64224	broad.mit.edu	37	7	35712846	35712846	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:35712846G>A	uc003tet.2	-	2	995	c.190C>T	c.(190-192)CCC>TCC	p.P64S	HERPUD2_uc003tes.3_Missense_Mutation_p.P64S	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	64	Ubiquitin-like.				response to unfolded protein	integral to membrane				ovary(3)	3						AGATGATCGGGAAGCAGTCTG	0.378													21	20					0	0	0.016522	0	0
VPS41	27072	broad.mit.edu	37	7	38797964	38797964	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:38797964G>A	uc003tgy.2	-	18	1566	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	VPS41_uc003tgz.2_Silent_p.L489L|VPS41_uc010kxn.2_Silent_p.L425L	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	514					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						AATTCTGCCAGGGTTTTAAGT	0.363													13	14					0	0	0.013537	0	0
HECW1	23072	broad.mit.edu	37	7	43447259	43447259	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:43447259C>T	uc003tid.1	+	8	1335	c.730C>T	c.(730-732)CTC>TTC	p.L244F	HECW1_uc011kbi.1_Missense_Mutation_p.L244F|HECW1_uc003tie.1_Missense_Mutation_p.L276F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	244	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CTTCCCCGCCCTCCCTCACCA	0.527													10	13					0	0	0.006214	0	0
PGAM2	5224	broad.mit.edu	37	7	44104771	44104771	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:44104771C>T	uc003tjs.2	-	1	393	c.358G>A	c.(358-360)GAC>AAC	p.D120N		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	120					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						GGCGGGATGTCGAAGGAGCGC	0.622													8	15					0	0	0.004482	0	0
MYO1G	64005	broad.mit.edu	37	7	45015128	45015128	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:45015128C>T	uc003tmh.2	-	4	663	c.519G>A	c.(517-519)AAG>AAA	p.K173K	MYO1G_uc003tmg.2_5'Flank|MYO1G_uc010kym.2_Silent_p.K58K|MYO1G_uc003tmi.1_Silent_p.K85K|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	173	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						TCGGGTCCCCCTTGAAGTCAA	0.597													6	12					0	0	0.003080	0	0
DDC	1644	broad.mit.edu	37	7	50530967	50530967	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:50530967C>T	uc003tpf.3	-	14	1491	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K	DDC_uc010kza.2_Missense_Mutation_p.E384K|DDC_uc003tpg.3_Missense_Mutation_p.E469K	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	469					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	GCCGCCAGCTCTTTGATGTGT	0.597													10	12					0	0	0.008291	0	0
COBL	23242	broad.mit.edu	37	7	51092997	51092997	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:51092997G>A	uc003tpr.3	-	12	3762	c.3577C>T	c.(3577-3579)CCT>TCT	p.P1193S	COBL_uc003tps.2_Intron|COBL_uc011kcl.1_Intron|COBL_uc003tpp.3_Missense_Mutation_p.P979S|COBL_uc003tpq.3_Intron|COBL_uc003tpo.3_Missense_Mutation_p.P735S	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1193										skin(3)|ovary(2)	5	Glioma(55;0.08)					TCTAGCAGAGGACTTTCCGAG	0.577													13	25					0	0	0.016723	0	0
WBSCR17	64409	broad.mit.edu	37	7	70853379	70853379	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:70853379G>A	uc003tvy.2	+	3	581	c.581G>A	c.(580-582)AGC>AAC	p.S194N	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	194	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GATGACAACAGCGACGAAGGT	0.577													8	15					0	0	0.003080	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339514	72339514	+	RNA	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:72339514T>A	uc010lal.1	-	1		c.142A>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCACTCCATCTTCCTTTTCCA	0.572													12	14					0	0	0.016723	0	0
FKBP6	8468	broad.mit.edu	37	7	72754775	72754775	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:72754775G>A	uc003tya.2	+	6	856	c.724G>A	c.(724-726)GGA>AGA	p.G242R	FKBP6_uc003twz.2_Missense_Mutation_p.G212R|FKBP6_uc011kew.1_Missense_Mutation_p.G237R|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	242	TPR 2.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CCTGTGCTATGGAGAGCAGGC	0.527													21	26					0	0	0.018920	0	0
CLDN4	1364	broad.mit.edu	37	7	73245539	73245539	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:73245539C>T	uc003tzi.3	+	1	347	c.8C>T	c.(7-9)TCC>TTC	p.S3F	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	3	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				ACAATGGCCTCCATGGGGCTA	0.657													20	40					0	0	0.016522	0	0
LAT2	7462	broad.mit.edu	37	7	73638363	73638363	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:73638363G>A	uc003uag.2	+	12	1014	c.464G>A	c.(463-465)GGC>GAC	p.G155D	RFC2_uc011kfa.1_Intron|LAT2_uc003uah.2_Missense_Mutation_p.G155D|LAT2_uc003uai.2_Missense_Mutation_p.G155D|LAT2_uc010lbo.2_RNA	NM_032464	NP_115853	Q9GZY6	NTAL_HUMAN	linker for activation of T cells family member	155	Cytoplasmic (Potential).				B cell activation|B cell receptor signaling pathway|calcium-mediated signaling|mast cell degranulation	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding				0						CAGCAGGAGGGCATAGGTGGC	0.627													8	9					0	0	0.003080	0	0
PCLO	27445	broad.mit.edu	37	7	82580330	82580330	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:82580330G>A	uc003uhx.2	-	6	9863	c.9574C>T	c.(9574-9576)CCT>TCT	p.P3192S	PCLO_uc003uhv.2_Missense_Mutation_p.P3192S|PCLO_uc010lec.2_Missense_Mutation_p.P157S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3123					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACCACTTCAGGAAACACTTCG	0.443													7	12					0	0	0.003080	0	0
PCLO	27445	broad.mit.edu	37	7	82584459	82584459	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:82584459C>T	uc003uhx.2	-	5	6099	c.5810G>A	c.(5809-5811)CGA>CAA	p.R1937Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1937Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1868					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CACTTCATCTCGTTCATTTGC	0.363													12	22					0	0	0.016723	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763378	92763378	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:92763378G>A	uc003umh.1	-	5	3123	c.1907C>T	c.(1906-1908)CCC>CTC	p.P636L	SAMD9L_uc003umj.1_Missense_Mutation_p.P636L|SAMD9L_uc003umi.1_Missense_Mutation_p.P636L|SAMD9L_uc010lfb.1_Missense_Mutation_p.P636L|SAMD9L_uc003umk.1_Missense_Mutation_p.P636L|SAMD9L_uc010lfc.1_Missense_Mutation_p.P636L|SAMD9L_uc010lfd.1_Missense_Mutation_p.P636L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	636										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TCCACGGGCGGGCAAAAACCT	0.403													24	54					0	0	0.004656	0	0
PDK4	5166	broad.mit.edu	37	7	95224396	95224396	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:95224396C>T	uc003uoa.2	-	2	531	c.211G>A	c.(211-213)GAA>AAA	p.E71K	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	71					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			ATATCAATTTCCTTCAGAATG	0.363													16	41					0	0	0.004990	0	0
TMEM130	222865	broad.mit.edu	37	7	98449069	98449069	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:98449069G>A	uc003upo.2	-	6	1170	c.981C>T	c.(979-981)TAC>TAT	p.Y327Y	TMEM130_uc011kiq.1_Silent_p.Y308Y|TMEM130_uc011kir.1_Silent_p.Y327Y|TMEM130_uc003upn.2_Silent_p.Y225Y	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	327	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGATCTTGTGGTACTGATGTG	0.577													17	42					0	0	0.004990	0	0
ZNF498	221785	broad.mit.edu	37	7	99221766	99221766	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:99221766G>A	uc003url.1	+	7	1095	c.768G>A	c.(766-768)GGG>GGA	p.G256G	ZNF498_uc003urm.1_Silent_p.G92G|ZNF498_uc010lge.1_Silent_p.G92G|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Intron|ZNF498_uc003uro.1_Silent_p.G40G	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	256					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					ACTGCTTTGGGGAGTATGTGG	0.572													35	76					0	0	0.006999	0	0
CYP3A7	1551	broad.mit.edu	37	7	99332660	99332660	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:99332660C>T	uc003uru.2	-	1	162	c.57G>A	c.(55-57)CTG>CTA	p.L19L	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_5'UTR|CYP3A5_uc010lgg.2_Silent_p.L19L	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	19					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					AGAGGAGTATCAGGCTGACAG	0.463													14	33					0	0	0.007413	0	0
AZGP1	563	broad.mit.edu	37	7	99565809	99565809	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:99565809C>T	uc003ush.2	-	3	626	c.582G>A	c.(580-582)CTG>CTA	p.L194L		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	194					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TGCTGTATTTCAGGTATTTCC	0.547													17	27					0	0	0.006122	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654752	99654753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:99654752_99654753GG>AA	uc003uso.2	+	2	267_268	c.123_124GG>AA	c.(121-126)CTGGAG>CTAAAG	p.E42K	ZSCAN21_uc011kje.1_Missense_Mutation_p.E41K|ZSCAN21_uc003usn.1_Missense_Mutation_p.E41K	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	42					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TTCCTAGCCTGGAGATGTTCCG	0.599													32	47					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	7	100551602	100551602	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:100551602C>T	uc003uxk.1	+	1		c.853C>T			uc003uxl.1_Missense_Mutation_p.S18F					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		CCAATCAGTTCCTTTAGCACA	0.493													89	150					0	0	0.014410	0	0
SLC26A3	1811	broad.mit.edu	37	7	107432355	107432355	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:107432355G>A	uc003ver.2	-	4	513	c.302C>T	c.(301-303)CCC>CTC	p.P101L	SLC26A3_uc003ves.2_Missense_Mutation_p.P66L	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	101	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ATAGACTGGGGGAATGTCGAC	0.458													23	37					0	0	0.014323	0	0
LAMB1	3912	broad.mit.edu	37	7	107600255	107600255	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:107600255G>A	uc003vew.2	-	19	2674	c.2339C>T	c.(2338-2340)TCG>TTG	p.S780L	LAMB1_uc003vev.2_Missense_Mutation_p.S804L|LAMB1_uc003vex.2_Missense_Mutation_p.S780L	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	780	Laminin EGF-like 6.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAACTTAACGAACCCTGAGG	0.547													9	10					0	0	0.006214	0	0
LAMB4	22798	broad.mit.edu	37	7	107688550	107688550	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:107688550C>T	uc010ljo.1	-	28	4213	c.4129G>A	c.(4129-4131)GGA>AGA	p.G1377R	LAMB4_uc003vey.2_Missense_Mutation_p.G1377R|LAMB4_uc010ljp.1_Missense_Mutation_p.G346R	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1377	Domain alpha.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CCTGGATCTCCGCACACCTTG	0.433													29	65					0	0	0.009535	0	0
GRM8	2918	broad.mit.edu	37	7	126542643	126542643	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:126542643T>C	uc003vlr.2	-	5	1420	c.1109A>G	c.(1108-1110)AAG>AGG	p.K370R	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.K370R|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.K91R	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	370	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TGATCCTAACTTGCAGCCAAA	0.368										HNSCC(24;0.065)			19	17					0	0	0.007413	0	0
DGKI	9162	broad.mit.edu	37	7	137092653	137092653	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:137092653T>G	uc003vtt.2	-	31	2913	c.2912A>C	c.(2911-2913)AAC>ACC	p.N971T	DGKI_uc003vtu.2_Missense_Mutation_p.N640T	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	971	ANK 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						AATCTCCCCGTTGCCGGTTTT	0.428													29	36					0	0	0.008361	0	0
KIAA1549	57670	broad.mit.edu	37	7	138555992	138555992	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:138555992G>A	uc011kql.1	-	13	4511	c.4462C>T	c.(4462-4464)CTT>TTT	p.L1488F	KIAA1549_uc011kqi.1_Missense_Mutation_p.L272F|KIAA1549_uc003vuk.3_Missense_Mutation_p.L1438F|KIAA1549_uc011kqj.1_Missense_Mutation_p.L1488F|KIAA1549_uc011kqk.1_Missense_Mutation_p.L272F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1488						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ATGGCGATAAGCTGGATCTTA	0.602			O	BRAF	pilocytic astrocytoma								17	35					0	0	0.004990	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657436	139657436	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:139657436C>T	uc011kqv.1	+	9	997	c.833C>T	c.(832-834)TCA>TTA	p.S278L	TBXAS1_uc003vvh.2_Missense_Mutation_p.S232L|TBXAS1_uc010lne.2_Missense_Mutation_p.S164L|TBXAS1_uc011kqu.1_Missense_Mutation_p.S183L|TBXAS1_uc003vvi.2_Missense_Mutation_p.S232L|TBXAS1_uc003vvj.2_Missense_Mutation_p.S232L|TBXAS1_uc011kqw.1_Missense_Mutation_p.S212L	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	231	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TTTCAAGTATCATTTCCATCC	0.453													26	33					0	0	0.006320	0	0
TAS2R4	50832	broad.mit.edu	37	7	141479077	141479077	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141479077C>T	uc003vwq.1	+	1	789	c.789C>T	c.(787-789)TCC>TCT	p.S263S		NM_016944	NP_058640	Q9NYW5	TA2R4_HUMAN	taste receptor T2R4	263	Helical; Name=7; (Potential).				sensory perception of taste	cilium membrane	taste receptor activity				0	Melanoma(164;0.0171)			BRCA - Breast invasive adenocarcinoma(188;0.196)		GGACCAAATCCATTTGTCTGA	0.408													32	45					0	0	0.013726	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490926	141490926	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141490926C>T	uc003vwr.1	+	1	910	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	255	Helical; Name=7; (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					CCAGTGTCTTCATCTGGGAGA	0.488													44	78					0	0	0.014410	0	0
PRSS37	136242	broad.mit.edu	37	7	141540847	141540847	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141540847C>T	uc003vws.1	-	1	375	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PRSS37_uc011krk.1_5'UTR|PRSS37_uc011krl.1_Missense_Mutation_p.M1I|PRSS37_uc003vwt.1_5'UTR	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	1					proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						AGACATATTTCATGGTGATCC	0.483													21	29					0	0	0.018920	0	0
OR9A4	130075	broad.mit.edu	37	7	141619534	141619534	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141619534C>T	uc003vwu.1	+	1	859	c.859C>T	c.(859-861)CCT>TCT	p.P287S		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TTTCCTCAATCCTTTCATCTT	0.473													13	40					0	0	0.016723	0	0
MGAM	8972	broad.mit.edu	37	7	141754686	141754686	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141754686C>T	uc003vwy.2	+	27	3346	c.3292C>T	c.(3292-3294)CGG>TGG	p.R1098W		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1098	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGAAATTCGCCGGAAGAGTAC	0.498													16	28					0	0	0.003163	0	0
MGAM	8972	broad.mit.edu	37	7	141796187	141796187	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:141796187C>T	uc003vwy.2	+	42	5030	c.4976C>T	c.(4975-4977)GCC>GTC	p.A1659V		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1659	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTGGGCCCAGCCTTCCTGGTC	0.557													9	28					0	0	0.004482	0	0
PRSS1	5644	broad.mit.edu	37	7	142457350	142457350	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:142457350G>A	uc003wak.2	+	1	32	c.15G>A	c.(13-15)CTG>CTA	p.L5L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Silent_p.L5L|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	5					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATCCACTCCTGATCCTTACCT	0.567									Hereditary_Pancreatitis				20	39					0	0	0.003954	0	0
TRY6	154754	broad.mit.edu	37	7	142481283	142481283	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:142481283C>T	uc011ksq.1	+	3	440	c.357C>T	c.(355-357)ATC>ATT	p.I119I	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CTGCCGTCATCAATGCCCATG	0.547													11	7					0	0	0.013537	0	0
TRY6	154754	broad.mit.edu	37	7	142481316	142481316	+	Silent	SNP	T	C	C	rs140068138	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:142481316T>C	uc011ksq.1	+	3	473	c.390T>C	c.(388-390)ACT>ACC	p.T130T	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CTCTGCCCACTGCCCCTCCAG	0.547													3	12					0	0	0.004482	0	0
TRPV6	55503	broad.mit.edu	37	7	142570162	142570162	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:142570162C>T	uc003wbx.1	-	14	2074	c.1858G>A	c.(1858-1860)GGA>AGA	p.G620R	TRPV6_uc003wbw.1_Missense_Mutation_p.G406R|TRPV6_uc010lou.1_Missense_Mutation_p.G491R	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	620	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TACTCCCGTCCGCAGATCCCG	0.627													10	11					0	0	0.013537	0	0
ZYX	7791	broad.mit.edu	37	7	143080384	143080385	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:143080384_143080385CC>TT	uc003wcw.2	+	5	1147_1148	c.992_993CC>TT	c.(991-993)CCC>CTT	p.P331L	ZYX_uc011ktd.1_Missense_Mutation_p.P174L|ZYX_uc003wcx.2_Missense_Mutation_p.P331L|ZYX_uc011kte.1_Missense_Mutation_p.P300L|ZYX_uc011ktf.1_Missense_Mutation_p.P174L	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	331					cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					AAGCAGCACCCCGTGCCCCCAC	0.639													8	14					0	0	0.004672	0	0
OR2F2	135948	broad.mit.edu	37	7	143632352	143632352	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:143632352G>A	uc011ktv.1	+	1	27	c.27G>A	c.(25-27)GTG>GTA	p.V9V		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					AGACGTGGGTGAGAGAATTTA	0.388													19	48					0	0	0.012319	0	0
SSPO	23145	broad.mit.edu	37	7	149498854	149498854	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:149498854C>T	uc010lpk.2	+	51	7306	c.7306C>T	c.(7306-7308)CTC>TTC	p.L2436F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2436					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTCCCTTCTCTCCCTGCCTT	0.597													15	12					0	0	0.004990	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389469	150389469	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:150389469G>A	uc003who.2	+	3	183	c.95G>A	c.(94-96)GGA>GAA	p.G32E	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	32	GTP (Potential).					integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCAAAACAGGAACTGGCAAA	0.498													5	10					0	0	0.014758	0	0
PRKAG2	51422	broad.mit.edu	37	7	151261232	151261232	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:151261232C>T	uc003wkk.2	-	14	2127	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	PRKAG2_uc003wki.2_Missense_Mutation_p.E265K|PRKAG2_uc011kvl.1_Missense_Mutation_p.E381K|PRKAG2_uc003wkj.2_Missense_Mutation_p.E462K|PRKAG2_uc003wkl.2_Missense_Mutation_p.E54K	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	506	CBS 4.				ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		ACAACACCTTCAAAATACTGT	0.463													24	32					0	0	0.018920	0	0
MLL3	58508	broad.mit.edu	37	7	151877015	151877015	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:151877015G>A	uc003wla.2	-	37	7565	c.7346C>T	c.(7345-7347)CCT>CTT	p.P2449L	MLL3_uc003wkz.2_Missense_Mutation_p.P1510L|MLL3_uc003wky.2_5'Flank	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2449	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TCCTAAAGGAGGGGCAACAGG	0.502			N		medulloblastoma								23	30					0	0	0.018920	0	0
SHH	6469	broad.mit.edu	37	7	155596253	155596253	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr7:155596253G>A	uc003wmk.1	-	3	881	c.730C>T	c.(730-732)CGC>TGC	p.R244C	SHH_uc003wmh.1_Intron|SHH_uc003wmi.1_Intron|SHH_uc003wmj.1_Missense_Mutation_p.R157C	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	244					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCGTCGTCGCGGTCCAGGAAA	0.697													9	9					0	0	0.006214	0	0
CSMD1	64478	broad.mit.edu	37	8	3081377	3081377	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:3081377C>T	uc011kwk.1	-	28	4751	c.4361G>A	c.(4360-4362)GGG>GAG	p.G1454E	CSMD1_uc011kwj.1_Missense_Mutation_p.G846E|CSMD1_uc003wqe.2_Missense_Mutation_p.G610E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1454	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CGTCAGATTCCCTCCACAAGC	0.502													11	8					0	0	0.008291	0	0
CSMD1	64478	broad.mit.edu	37	8	3443759	3443759	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:3443759G>A	uc011kwk.1	-	9	1514	c.1124C>T	c.(1123-1125)TCA>TTA	p.S375L		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	375	Extracellular (Potential).|Sushi 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTCCTCACATGAAAACTGTAC	0.408													4	11					0	0	0.014758	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749933	8749933	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:8749933G>A	uc003wsj.1	-	1	1199	c.636C>T	c.(634-636)TCC>TCT	p.S212S		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	212	LRR 7.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		GCCGGTTGCTGGACACGTCCA	0.692													6	5					0	0	0.001168	0	0
PIWIL2	55124	broad.mit.edu	37	8	22138946	22138946	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:22138946G>A	uc003xbn.2	+	4	491	c.343G>A	c.(343-345)GAA>AAA	p.E115K	PIWIL2_uc011kzf.1_Missense_Mutation_p.E115K|PIWIL2_uc010ltv.2_Missense_Mutation_p.E115K	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	115					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GGACAGGGAGGAACTCTCTCC	0.507													24	67					0	0	0.003954	0	0
ADAM28	10863	broad.mit.edu	37	8	24157543	24157543	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:24157543A>G	uc003xdy.2	+	2	186	c.103A>G	c.(103-105)AGA>GGA	p.R35G	ADAM28_uc003xdx.2_Missense_Mutation_p.R35G|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	35					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TTATCCTATAAGACTTCATCC	0.368													12	36					0	0	0.002450	0	0
ADAM7	8756	broad.mit.edu	37	8	24357708	24357708	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:24357708C>T	uc003xeb.2	+	18	2054	c.1941C>T	c.(1939-1941)CTC>CTT	p.L647L	ADAM7_uc003xec.2_Silent_p.L419L	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	647	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		gccacggaCTCCAGTGCCACT	0.323													12	13					0	0	0.016723	0	0
EXTL3	2137	broad.mit.edu	37	8	28575513	28575513	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:28575513C>T	uc003xgz.1	+	3	2530	c.1937C>T	c.(1936-1938)TCT>TTT	p.S646F		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	646	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GCTGGGGGTTCTGGCAAGGAA	0.552													11	14					0	0	0.013537	0	0
KIF13B	23303	broad.mit.edu	37	8	29033683	29033683	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:29033683G>A	uc003xhh.3	-	10	906	c.847C>T	c.(847-849)CTC>TTC	p.L283F	KIF13B_uc003xhj.2_Missense_Mutation_p.L180F|KIF13B_uc010lvf.1_Missense_Mutation_p.L219F	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	283					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		ACCAGACCGAGGGTTGTGAGG	0.393													4	9					0	0	0.009096	0	0
UNC5D	137970	broad.mit.edu	37	8	35624480	35624480	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:35624480C>T	uc003xjr.1	+	15	2702	c.2374C>T	c.(2374-2376)CTG>TTG	p.L792L	UNC5D_uc003xjs.1_Silent_p.L787L|UNC5D_uc003xju.1_Silent_p.L368L	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	792	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TGCCTTCTCCCTGGAGCGTTA	0.582													22	22					0	0	0.012319	0	0
TACC1	6867	broad.mit.edu	37	8	38704275	38704275	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:38704275C>T	uc010lwp.2	+	12	2666	c.2287C>T	c.(2287-2289)CAT>TAT	p.H763Y	TACC1_uc003xma.2_Missense_Mutation_p.H201Y|TACC1_uc003xlz.2_Missense_Mutation_p.H568Y|TACC1_uc003xmc.3_Missense_Mutation_p.H567Y|TACC1_uc011lbz.1_Missense_Mutation_p.H750Y|TACC1_uc003xmb.3_Missense_Mutation_p.H689Y|TACC1_uc003xmf.3_Missense_Mutation_p.H353Y|TACC1_uc011lca.1_Missense_Mutation_p.H746Y|TACC1_uc011lcb.1_Missense_Mutation_p.H539Y|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.H580Y|TACC1_uc010lwq.2_Missense_Mutation_p.H579Y	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	763	|Interaction with CH-TOG.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			TGCAGCTCTCCATGCTGGACT	0.507													7	22					0	0	0.003080	0	0
OPRK1	4986	broad.mit.edu	37	8	54141976	54141976	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:54141976G>A	uc003xrh.1	-	3	1399	c.1024C>T	c.(1024-1026)CGG>TGG	p.R342W	OPRK1_uc003xri.1_Missense_Mutation_p.R342W|OPRK1_uc010lyc.1_Missense_Mutation_p.R253W	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	342	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CAGAAGTCCCGGAAACACCGC	0.493													6	14					0	0	0.001168	0	0
RP1	6101	broad.mit.edu	37	8	55541405	55541405	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:55541405C>T	uc003xsd.1	+	4	5111	c.4963C>T	c.(4963-4965)CAG>TAG	p.Q1655*	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1655					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCGCAAATCTCAGGTTTGTCC	0.373													10	67					0	0	0.006214	0	0
RP1	6101	broad.mit.edu	37	8	55542149	55542149	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:55542149G>A	uc003xsd.1	+	4	5855	c.5707G>A	c.(5707-5709)GAA>AAA	p.E1903K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1903					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TACACTTCAGGAAGCTGACTC	0.403													24	16					0	0	0.018920	0	0
RP1	6101	broad.mit.edu	37	8	55542424	55542424	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:55542424C>T	uc003xsd.1	+	4	6130	c.5982C>T	c.(5980-5982)TTC>TTT	p.F1994F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1994					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGTTTTATTTCAGTAACACAT	0.303													6	12					0	0	0.001984	0	0
XKR4	114786	broad.mit.edu	37	8	56270244	56270244	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:56270244C>T	uc003xsf.2	+	2	845	c.813C>T	c.(811-813)TTC>TTT	p.F271F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	271						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CTAGATATTTCCACACAATAT	0.388													13	19					0	0	0.002450	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228802	57228802	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:57228802C>T	uc003xsy.1	-	2	743	c.105G>A	c.(103-105)CGG>CGA	p.R35R	SDR16C5_uc010lyk.1_Silent_p.R35R|SDR16C5_uc010lyl.1_Silent_p.R35R	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	35					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAACGTTCTTCCGTGGCTTTG	0.458													6	18					0	0	0.001168	0	0
CLVS1	157807	broad.mit.edu	37	8	62366700	62366700	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:62366700G>A	uc003xuh.2	+	4	955	c.631G>A	c.(631-633)GAC>AAC	p.D211N	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.D211N	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	211	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TCTGCCCCAGGACAGCTTTCC	0.498													36	111					0	0	0.006999	0	0
C8orf34	116328	broad.mit.edu	37	8	69434033	69434033	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:69434033G>A	uc010lyz.2	+	6	557	c.508_splice	c.e6-1	p.E170_splice	C8orf34_uc010lyy.1_Splice_Site_p.E170_splice|C8orf34_uc003xyb.2_Splice_Site_p.E145_splice	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328						signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CTTCTCTTCAGGAAACAGTGA	0.388													8	15					0	0	0.004482	0	0
C8orf34	116328	broad.mit.edu	37	8	69434197	69434197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:69434197C>T	uc010lyz.2	+	6	720	c.671C>T	c.(670-672)CCT>CTT	p.P224L	C8orf34_uc010lyy.1_Missense_Mutation_p.P224L|C8orf34_uc003xyb.2_Missense_Mutation_p.P199L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	224					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			GGCTCTAGTCCTGCAGGAAGG	0.408													10	22					0	0	0.008291	0	0
KCNB2	9312	broad.mit.edu	37	8	73848429	73848429	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:73848429C>T	uc003xzb.2	+	3	1427	c.839C>T	c.(838-840)ACC>ATC	p.T280I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	280	Helical; Name=Segment S3; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TACTATGTCACCATTTTTCTG	0.473													6	38					0	0	0.001168	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617253	77617253	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:77617253G>A	uc003yav.2	+	2	1317	c.930G>A	c.(928-930)CAG>CAA	p.Q310Q	ZFHX4_uc003yat.1_Silent_p.Q310Q|ZFHX4_uc003yau.1_Silent_p.Q310Q|ZFHX4_uc003yaw.1_Silent_p.Q310Q	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	310						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACGAGGAGCAGAAGCTCCTCA	0.413										HNSCC(33;0.089)			31	36					0	0	0.012213	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618162	77618162	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:77618162C>T	uc003yav.2	+	2	2226	c.1839C>T	c.(1837-1839)ATC>ATT	p.I613I	ZFHX4_uc003yat.1_Silent_p.I613I|ZFHX4_uc003yau.1_Silent_p.I613I|ZFHX4_uc003yaw.1_Silent_p.I613I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	613	C2H2-type 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCAGTGGCATCGAGTGTCCAA	0.557										HNSCC(33;0.089)			8	39					0	0	0.003080	0	0
ZFHX4	79776	broad.mit.edu	37	8	77619967	77619967	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:77619967G>A	uc003yav.2	+	3	3086	c.2699G>A	c.(2698-2700)AGT>AAT	p.S900N	ZFHX4_uc003yat.1_Missense_Mutation_p.S900N|ZFHX4_uc003yau.1_Missense_Mutation_p.S926N|ZFHX4_uc003yaw.1_Missense_Mutation_p.S900N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	900						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATGTGAGCAGTGAGCGCTCT	0.502										HNSCC(33;0.089)			9	8					0	0	0.004482	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766795	77766795	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:77766795G>A	uc003yav.2	+	10	7890	c.7503G>A	c.(7501-7503)CTG>CTA	p.L2501L	ZFHX4_uc003yau.1_Silent_p.L2546L|ZFHX4_uc003yaw.1_Silent_p.L2501L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2501						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACAATCCGCTGATGACTGGAC	0.527										HNSCC(33;0.089)			30	22					0	0	0.017118	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776234	77776234	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:77776234C>T	uc003yav.2	+	11	10536	c.10149C>T	c.(10147-10149)TTC>TTT	p.F3383F		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3379						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCTGTTATTTCGGTCAGCCTT	0.438										HNSCC(33;0.089)			8	8					0	0	0.004482	0	0
MMP16	4325	broad.mit.edu	37	8	89180048	89180048	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:89180048T>G	uc003yeb.3	-	4	841	c.559A>C	c.(559-561)ATT>CTT	p.I187L	MMP16_uc003yec.2_Missense_Mutation_p.I187L	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	187	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GATGCAAAAATAATGGTTATA	0.453													5	22					0	0	0.001168	0	0
DECR1	1666	broad.mit.edu	37	8	91029432	91029432	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:91029432G>A	uc003yek.1	+	2	291	c.150G>A	c.(148-150)GCG>GCA	p.A50A	DECR1_uc011lgc.1_Silent_p.A41A|DECR1_uc011lgd.1_Intron	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	50					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TTCAAAAAGCGATGCTACCAC	0.378													6	22					0	0	0.001168	0	0
RUNX1T1	862	broad.mit.edu	37	8	93026829	93026829	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:93026829C>T	uc003yfd.2	-	3	530	c.446G>A	c.(445-447)CGC>CAC	p.R149H	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R122H|RUNX1T1_uc003yfe.1_Missense_Mutation_p.R112H|RUNX1T1_uc010mao.2_Missense_Mutation_p.R122H|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R160H|RUNX1T1_uc003yfh.1_Missense_Mutation_p.R112H|RUNX1T1_uc003yfb.1_Missense_Mutation_p.R112H|RUNX1T1_uc003yff.1_Missense_Mutation_p.R112H|RUNX1T1_uc003yfg.1_Missense_Mutation_p.R112H	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	149	TAFH.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AACGAGGGTGCGAACTCTTTC	0.507													23	24					0	0	0.004656	0	0
RUNX1T1	862	broad.mit.edu	37	8	93026853	93026853	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:93026853G>A	uc003yfd.2	-	3	506	c.422C>T	c.(421-423)TCA>TTA	p.S141L	RUNX1T1_uc003yfc.1_Missense_Mutation_p.S114L|RUNX1T1_uc003yfe.1_Missense_Mutation_p.S104L|RUNX1T1_uc010mao.2_Missense_Mutation_p.S114L|RUNX1T1_uc011lgi.1_Missense_Mutation_p.S152L|RUNX1T1_uc003yfh.1_Missense_Mutation_p.S104L|RUNX1T1_uc003yfb.1_Missense_Mutation_p.S104L|RUNX1T1_uc003yff.1_Missense_Mutation_p.S104L|RUNX1T1_uc003yfg.1_Missense_Mutation_p.S104L	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	141	TAFH.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TATCTCGGGTGAAATGTCATT	0.512													10	39					0	0	0.010729	0	0
GEM	2669	broad.mit.edu	37	8	95272478	95272478	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:95272478C>T	uc003ygj.2	-	2	503	c.254G>A	c.(253-255)GGG>GAG	p.G85E	GEM_uc003ygi.2_Missense_Mutation_p.G85E	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	85	GTP (By similarity).				cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			CTTGCCCACCCCCTGCTCCCC	0.607													13	25					0	0	0.016723	0	0
KCNS2	3788	broad.mit.edu	37	8	99440889	99440889	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:99440889G>A	uc003yin.2	+	2	1032	c.682G>A	c.(682-684)GAA>AAA	p.E228K		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	228	Extracellular (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CCCTAGGTTCGAAATCGTGGA	0.547													26	29					0	0	0.005443	0	0
GRHL2	79977	broad.mit.edu	37	8	102570809	102570809	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:102570809C>T	uc010mbu.2	+	4	777	c.447C>T	c.(445-447)ATC>ATT	p.I149I	GRHL2_uc011lhi.1_Silent_p.I149I	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	149						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			GCTCTGCCATCATCCCGGTGT	0.527													12	38					0	0	0.010729	0	0
DPYS	1807	broad.mit.edu	37	8	105463544	105463544	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:105463544C>T	uc003yly.3	-	2	482	c.353G>A	c.(352-354)CGA>CAA	p.R118Q		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	118					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGCCCAGCTTCGCCAGGTCTC	0.522													11	13					0	0	0.008291	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815015	106815015	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:106815015G>A	uc003ymd.2	+	8	2728	c.2705G>A	c.(2704-2706)CGA>CAA	p.R902Q	ZFPM2_uc011lhs.1_Missense_Mutation_p.R633Q	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	902					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GAAAGCGAACGAAACAGCCCT	0.458													8	9					0	0	0.003080	0	0
ANGPT1	284	broad.mit.edu	37	8	108264104	108264104	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:108264104C>T	uc003ymn.2	-	9	1944	c.1476G>A	c.(1474-1476)ATG>ATA	p.M492I	ANGPT1_uc011lhv.1_Missense_Mutation_p.M292I|ANGPT1_uc003ymo.2_Missense_Mutation_p.M491I	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	492	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			AAGGTCGAATCATCATAGTTG	0.413													12	34					0	0	0.003163	0	0
ANGPT1	284	broad.mit.edu	37	8	108334194	108334194	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:108334194G>A	uc003ymn.2	-	4	1206	c.738C>T	c.(736-738)GTC>GTT	p.V246V	ANGPT1_uc011lhv.1_Silent_p.V46V|ANGPT1_uc003ymo.2_Silent_p.V246V|ANGPT1_uc003ymp.3_Silent_p.V46V	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	246	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GCTTCTGAAGGACACTGTTGT	0.428													28	30					0	0	0.013726	0	0
TMEM74	157753	broad.mit.edu	37	8	109797304	109797304	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:109797304C>T	uc003ymy.1	-	2	129	c.24G>A	c.(22-24)AAG>AAA	p.K8K	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	8					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			GGTTGCTCTTCTTAGCAAGGT	0.537													9	15					0	0	0.004482	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110437383	110437383	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110437383C>T	uc003yne.2	+	24	2871	c.2767C>T	c.(2767-2769)CAT>TAT	p.H923Y		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	923	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTCAAAAATTCATATTCAAAG	0.318										HNSCC(38;0.096)			4	10					0	0	0.009096	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110454404	110454404	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110454404G>A	uc003yne.2	+	35	4477	c.4373G>A	c.(4372-4374)GGA>GAA	p.G1458E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1458	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTCACAAGTGGAAGACAAAAA	0.343										HNSCC(38;0.096)			7	8					0	0	0.004482	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110466975	110466975	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110466975C>A	uc003yne.2	+	45	6872	c.6768C>A	c.(6766-6768)TTC>TTA	p.F2256L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2256	Extracellular (Potential).|G8 1.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CATCCCCATTCCAACACAAGG	0.458										HNSCC(38;0.096)			10	46					1.05317e-09	1.20454e-09	0.002450	1	0
PKHD1L1	93035	broad.mit.edu	37	8	110478869	110478869	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110478869G>A	uc003yne.2	+	50	8580	c.8476G>A	c.(8476-8478)GAA>AAA	p.E2826K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2826	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGTACTCAGGAAGCTGAGTG	0.453										HNSCC(38;0.096)			3	3					0	0	0.004672	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110503282	110503282	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110503282G>A	uc003yne.2	+	61	10170	c.10066G>A	c.(10066-10068)GAT>AAT	p.D3356N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3356	Extracellular (Potential).|PbH1 6.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATTTGGGACAGATGGATTGGA	0.388										HNSCC(38;0.096)			13	54					0	0	0.013537	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510755	110510755	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:110510755C>T	uc003yne.2	+	66	10768	c.10664C>T	c.(10663-10665)CCT>CTT	p.P3555L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3555	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AATGATGATCCTAATATTGAA	0.348										HNSCC(38;0.096)			18	19					0	0	0.014323	0	0
CSMD3	114788	broad.mit.edu	37	8	114111130	114111130	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:114111130G>A	uc003ynu.2	-	5	931	c.772C>T	c.(772-774)CCT>TCT	p.P258S	CSMD3_uc003ynt.2_Missense_Mutation_p.P218S|CSMD3_uc011lhx.1_Missense_Mutation_p.P258S|CSMD3_uc010mcx.1_Missense_Mutation_p.P258S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	258	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TACTCATTAGGAAAACTAGGG	0.388										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			11	20					0	0	0.008291	0	0
ADCY8	114	broad.mit.edu	37	8	132002703	132002703	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:132002703G>A	uc003ytd.3	-	2	1302	c.1046C>T	c.(1045-1047)GCT>GTT	p.A349V	ADCY8_uc010mds.2_Missense_Mutation_p.A349V	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	349	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CTCCAGGAAAGCTTGGCGCTG	0.517										HNSCC(32;0.087)			47	52					0	0	0.014410	0	0
FAM135B	51059	broad.mit.edu	37	8	139163736	139163736	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:139163736A>T	uc003yuy.2	-	13	3153	c.2982T>A	c.(2980-2982)CAT>CAA	p.H994Q	FAM135B_uc003yux.2_Missense_Mutation_p.H895Q|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.H556Q|FAM135B_uc003yvb.2_Missense_Mutation_p.H556Q	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	994										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AAACCTGGGAATGAACGGAAT	0.502										HNSCC(54;0.14)			14	21					0	0	0.016723	0	0
FAM135B	51059	broad.mit.edu	37	8	139163864	139163864	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:139163864C>T	uc003yuy.2	-	13	3025	c.2854G>A	c.(2854-2856)GGC>AGC	p.G952S	FAM135B_uc003yux.2_Missense_Mutation_p.G853S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G514S|FAM135B_uc003yvb.2_Missense_Mutation_p.G514S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	952										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTTTGCTGGCCTGTTGAGTTC	0.493										HNSCC(54;0.14)			15	56					0	0	0.004007	0	0
COL22A1	169044	broad.mit.edu	37	8	139838959	139838959	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr8:139838959G>A	uc003yvd.2	-	6	1358	c.911C>T	c.(910-912)ACC>ATC	p.T304I		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	304	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTTCCGAGAGGTTTTCCTGAA	0.512										HNSCC(7;0.00092)			21	21					0	0	0.016522	0	0
DOCK8	81704	broad.mit.edu	37	9	340242	340242	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:340242C>T	uc003zgf.2	+	14	1712	c.1600C>T	c.(1600-1602)CCT>TCT	p.P534S	DOCK8_uc011lls.1_Missense_Mutation_p.P534S|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.P466S|DOCK8_uc003zgg.2_Missense_Mutation_p.P466S|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	534	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GAAACCCTTTCCTGAAAACCG	0.453													29	21					0	0	0.007291	0	0
KIAA2026	158358	broad.mit.edu	37	9	5920074	5920074	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:5920074A>G	uc003zjq.3	-	8	6138	c.5922T>C	c.(5920-5922)AGT>AGC	p.S1974S	KIAA2026_uc010mht.2_Silent_p.S1149S	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1974										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TGGGTATAGAACTTGCATTCC	0.388													39	11					0	0	0.006230	0	0
TPD52L3	89882	broad.mit.edu	37	9	6329004	6329004	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:6329004A>G	uc003zjw.2	+	1	630	c.409A>G	c.(409-411)AGA>GGA	p.R137G	TPD52L3_uc003zjv.2_Intron|TPD52L3_uc003zjx.1_Intron	NM_033516	NP_277051	Q96J77	TPD55_HUMAN	protein kinase NYD-SP25 isoform 1	137							protein binding				0		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0198)|Lung(218;0.1)		AGGGGGCAAAAGAGCTTGGCC	0.542													21	7					0	0	0.016522	0	0
FREM1	158326	broad.mit.edu	37	9	14746954	14746954	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:14746954C>T	uc003zlm.2	-	34	6695	c.6105G>A	c.(6103-6105)GGG>GGA	p.G2035G	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Silent_p.G571G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2035					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCCAGGCGATCCCATTGCACT	0.488													3	3					0	0	0.009096	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18680362	18680362	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:18680362C>T	uc003zne.3	+	11	1316	c.1189C>T	c.(1189-1191)CAG>TAG	p.Q397*	ADAMTSL1_uc003znb.2_Nonsense_Mutation_p.Q380*|ADAMTSL1_uc003znc.3_Nonsense_Mutation_p.Q397*	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	397	TSP type-1 2.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGGGGGCATCCAGAGCCGGGC	0.597													22	8					0	0	0.012319	0	0
IFNA7	3444	broad.mit.edu	37	9	21201913	21201913	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:21201913G>A	uc003zop.1	-	1	292	c.252C>T	c.(250-252)ATC>ATT	p.I84I	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	84					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGGTCTGCTGGATCATCTCAT	0.478													37	21					0	0	0.007835	0	0
IFT74	80173	broad.mit.edu	37	9	26978177	26978177	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:26978177G>A	uc010mja.2	+	3	299	c.172G>A	c.(172-174)GGT>AGT	p.G58S	IFT74_uc010mjb.2_Missense_Mutation_p.G58S|IFT74_uc003zqf.3_Missense_Mutation_p.G58S|IFT74_uc003zqg.3_Missense_Mutation_p.G58S	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	58						cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		CATAGGGACTGGTGGAGTTCT	0.423													24	3					0	0	0.014323	0	0
TAF1L	138474	broad.mit.edu	37	9	32630672	32630672	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:32630672C>T	uc003zrg.1	-	1	4996	c.4906G>A	c.(4906-4908)GAT>AAT	p.D1636N	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1636					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GTACAAATATCCTTCTCAAGT	0.448													41	13					0	0	0.006999	0	0
C9orf128	392307	broad.mit.edu	37	9	35826009	35826009	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:35826009C>T	uc010mlc.2	-	2	435	c.150G>A	c.(148-150)GAG>GAA	p.E50E	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Silent_p.E50E	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	50											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			AGGTATGGGGCTCTAACGGGG	0.547											OREG0019180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	18					0	0	0.009718	0	0
ZBTB5	9925	broad.mit.edu	37	9	37441524	37441524	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:37441524T>C	uc003zzx.2	-	2	1225	c.1025A>G	c.(1024-1026)GAA>GGA	p.E342G		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	342					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		ATCGCTCACTTCATCCTGAGG	0.527													20	15					0	0	0.008871	0	0
SHB	6461	broad.mit.edu	37	9	37955983	37955983	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:37955983G>A	uc004aax.2	-	4	1691	c.1123C>T	c.(1123-1125)CGT>TGT	p.R375C		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	375	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		CCAGGGGCACGAAGCTGGCGC	0.607													11	1					0	0	0.008291	0	0
TMEM2	23670	broad.mit.edu	37	9	74337425	74337425	+	Silent	SNP	A	G	G	rs113221267		TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:74337425A>G	uc011lsa.1	-	12	2725	c.2185T>C	c.(2185-2187)TTA>CTA	p.L729L	TMEM2_uc010mos.2_Silent_p.L666L|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	729	PbH1 2.					integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TCAATAAATAAGCCAGCCTGA	0.353													17	19					0	0	0.007413	0	0
TRPM6	140803	broad.mit.edu	37	9	77407656	77407656	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:77407656C>T	uc004ajl.1	-	19	2660	c.2422G>A	c.(2422-2424)GAG>AAG	p.E808K	TRPM6_uc004ajk.1_Missense_Mutation_p.E803K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	808	Extracellular (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCCAGTTTCTCATCATGGCCC	0.383													5	29					0	0	0.014758	0	0
PCSK5	5125	broad.mit.edu	37	9	78547371	78547371	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:78547371C>A	uc004ajz.2	+	2	807	c.269C>A	c.(268-270)ACC>AAC	p.T90N	PCSK5_uc004ajy.2_Missense_Mutation_p.T90N|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	90					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						AGCAGAGGGACCCACAGTTTC	0.468													16	29					5.01169e-05	5.70759e-05	0.004990	1	0
PCSK5	5125	broad.mit.edu	37	9	78804140	78804140	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:78804140G>A	uc004ajz.2	+	19	3048	c.2510_splice	c.e19+1	p.K837_splice	PCSK5_uc004aka.2_Splice_Site|PCSK5_uc004akb.2_Splice_Site_p.K111_splice	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5						anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CCTGCAAAAAGTAAGTGGATC	0.403													27	28					0	0	0.007291	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324197	79324197	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:79324197G>T	uc010mpk.2	-	8	3117	c.2993C>A	c.(2992-2994)TCA>TAA	p.S998*		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	998					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACCATCTTTTGACTCAAAACC	0.453													11	23					3.07112e-06	3.50182e-06	0.010729	1	0
RASEF	158158	broad.mit.edu	37	9	85677354	85677354	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:85677354G>A	uc004amo.1	-	1	690	c.429C>T	c.(427-429)CCC>CCT	p.P143P	RASEF_uc004amp.1_Silent_p.P143P	NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	143					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						ACTCGCACCTGGGAATGAACT	0.672													12	14					0	0	0.016723	0	0
Unknown	0	broad.mit.edu	37	9	90746675	90746675	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:90746675G>A	uc011lti.1	-	4	1306	c.1277C>T	c.(1276-1278)TCC>TTC	p.S426F						SubName: Full=cDNA FLJ59639;																		GTTAGGAGTGGAGACACTAAA	0.488													77	59					0	0	0.014410	0	0
SYK	6850	broad.mit.edu	37	9	93626931	93626931	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:93626931C>T	uc004aqz.2	+	5	983	c.778C>T	c.(778-780)CAA>TAA	p.Q260*	SYK_uc004aqy.2_Nonsense_Mutation_p.Q260*|SYK_uc004ara.2_Nonsense_Mutation_p.Q260*|SYK_uc004arb.2_Nonsense_Mutation_p.Q260*|SYK_uc004arc.2_Nonsense_Mutation_p.Q260*|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	260	Linker.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TGTCCCATGTCAAAAAATCGG	0.398			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								18	18					0	0	0.007413	0	0
SPTLC1	10558	broad.mit.edu	37	9	94821582	94821582	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:94821582G>A	uc004arl.1	-	7	607	c.569C>T	c.(568-570)GCT>GTT	p.A190V	SPTLC1_uc011ltv.1_Missense_Mutation_p.A190V|SPTLC1_uc004arm.1_Missense_Mutation_p.A190V	NM_006415	NP_006406	O15269	SPTC1_HUMAN	serine palmitoyltransferase subunit 1 isoform a	190	Cytoplasmic (Potential).					integral to membrane|SPOTS complex	protein binding|pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			ovary(1)|breast(1)	2					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	AAAGCAGGCAGCTCTATCTCT	0.403													14	38					0	0	0.003163	0	0
ZNF484	83744	broad.mit.edu	37	9	95610021	95610021	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:95610021G>A	uc004asu.1	-	5	1197	c.1048C>T	c.(1048-1050)CAT>TAT	p.H350Y	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.H352Y|ZNF484_uc010mrb.1_Missense_Mutation_p.H314Y|ZNF484_uc004asv.1_Missense_Mutation_p.H314Y	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	350	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCAGAATGAATTCTCTGG	0.368													16	39					0	0	0.003163	0	0
LOC441455	441455	broad.mit.edu	37	9	99489264	99489264	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:99489264C>T	uc011luo.1	+	1		c.1162C>T				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						CCCTGATGGCCTTACAGAGAA	0.478													15	4					0	0	0.003163	0	0
OR13C4	138804	broad.mit.edu	37	9	107288807	107288807	+	Silent	SNP	C	T	T	rs141274906	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:107288807C>T	uc011lvn.1	-	1	684	c.684G>A	c.(682-684)ACG>ACA	p.T228T		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGCCGAGTTCGTTCGCAAGA	0.408													56	16					0	0	0.014410	0	0
OR13C8	138802	broad.mit.edu	37	9	107332344	107332344	+	Missense_Mutation	SNP	G	A	A	rs148995087	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:107332344G>A	uc011lvo.1	+	1	896	c.896G>A	c.(895-897)CGA>CAA	p.R299Q		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TATAGTCTGCGAAACAAGGAT	0.378													41	3					0	0	0.006230	0	0
ZNF462	58499	broad.mit.edu	37	9	109690269	109690269	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:109690269C>T	uc004bcz.2	+	3	4365	c.4076C>T	c.(4075-4077)TCT>TTT	p.S1359F	ZNF462_uc010mto.2_Missense_Mutation_p.S1207F|ZNF462_uc004bda.2_Missense_Mutation_p.S1207F	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1359					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						TCCCCTCCCTCTCTCACAATG	0.507													27	11					0	0	0.005443	0	0
SVEP1	79987	broad.mit.edu	37	9	113173659	113173659	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:113173659T>A	uc010mtz.2	-	37	6669	c.6332A>T	c.(6331-6333)AAA>ATA	p.K2111I	SVEP1_uc010mty.2_Missense_Mutation_p.K37I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2111	Sushi 12.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCCATGCATTTAAAGCTCAC	0.458													14	5					0	0	0.002450	0	0
SUSD1	64420	broad.mit.edu	37	9	114886656	114886656	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:114886656G>A	uc004bfu.2	-	6	808	c.767C>T	c.(766-768)TCC>TTC	p.S256F	SUSD1_uc010mui.2_Missense_Mutation_p.S256F|SUSD1_uc010muj.2_Missense_Mutation_p.S256F	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	256	Sushi 2.|Extracellular (Potential).					integral to membrane	calcium ion binding				0						GCCCAGCCTGGAGCTGTGATT	0.532													49	17					0	0	0.014410	0	0
PAPPA	5069	broad.mit.edu	37	9	118969825	118969825	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:118969825G>A	uc004bjn.2	+	3	1950	c.1569G>A	c.(1567-1569)GAG>GAA	p.E523E	PAPPA_uc011lxp.1_Silent_p.E316E|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	523	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCTCAGAGGAGGAGTTGGCAG	0.443													24	14					0	0	0.018920	0	0
ASTN2	23245	broad.mit.edu	37	9	119188351	119188351	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:119188351G>A	uc004bjs.1	-	23	3900	c.3799C>T	c.(3799-3801)CTA>TTA	p.L1267L	ASTN2_uc004bjr.1_Silent_p.L1263L|ASTN2_uc004bjt.1_Silent_p.L1216L|ASTN2_uc004bjp.1_Silent_p.L360L|ASTN2_uc004bjq.1_Silent_p.L319L|ASTN2_uc011lxr.1_Silent_p.L319L|ASTN2_uc011lxs.1_Silent_p.L319L|ASTN2_uc011lxt.1_Silent_p.L319L|ASTN2_uc004bjo.1_Silent_p.L48L	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1267	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGTCGCCGTAGAATCAGGTGG	0.512													11	4					0	0	0.013537	0	0
OR1B1	347169	broad.mit.edu	37	9	125391730	125391730	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:125391730G>A	uc011lyz.1	-	1	85	c.85C>T	c.(85-87)CTC>TTC	p.L29F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	29	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGAAGAAGAGGAGAGTGTAG	0.507													18	9					0	0	0.007413	0	0
LCN2	3934	broad.mit.edu	37	9	130911873	130911873	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:130911873C>T	uc004bto.1	+	1	142	c.69C>T	c.(67-69)TCC>TCT	p.S23S	LCN2_uc010mxq.1_Silent_p.S23S|LCN2_uc011map.1_Silent_p.S23S	NM_005564	NP_005555	P80188	NGAL_HUMAN	lipocalin 2 precursor	23					apoptosis|innate immune response|regulation of apoptosis|siderophore transport		iron ion binding|transporter activity				0						CCCAGGACTCCACCTCAGACC	0.637													41	18					0	0	0.005524	0	0
GBGT1	26301	broad.mit.edu	37	9	136029372	136029372	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:136029372C>T	uc004ccw.2	-	7	917	c.636G>A	c.(634-636)CGG>CGA	p.R212R	RALGDS_uc011mcw.1_Intron|GBGT1_uc004ccx.2_Silent_p.R165R|GBGT1_uc010nab.2_3'UTR|GBGT1_uc011mcx.1_Silent_p.R195R|GBGT1_uc010nac.1_Silent_p.R76R|GBGT1_uc004ccy.1_3'UTR	NM_021996	NP_068836	Q8N5D6	GBGT1_HUMAN	globoside	212	Lumenal (Potential).				carbohydrate metabolic process|glycolipid biosynthetic process	Golgi membrane|integral to membrane	metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;3.49e-06)|Epithelial(140;2.59e-05)		CCCACGGGTTCCGAAACACCA	0.612													29	16					0	0	0.008361	0	0
FCN1	2219	broad.mit.edu	37	9	137805459	137805459	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:137805459C>T	uc004cfi.2	-	5	400	c.308G>A	c.(307-309)GGA>GAA	p.G103E		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	103					opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CCCAGCGTCTCCTGTGTGGGG	0.582													15	2					0	0	0.006122	0	0
GLT6D1	360203	broad.mit.edu	37	9	138517984	138517984	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:138517984C>A	uc010nbd.1	-	4	442	c.188G>T	c.(187-189)AGG>ATG	p.R63M		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	63	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		CAGGACCCGCCTGTCGAAAGT	0.498													41	7					4.01765e-15	4.61771e-15	0.009718	1	0
NDOR1	27158	broad.mit.edu	37	9	140109353	140109353	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:140109353C>T	uc004clw.2	+	8	1059	c.948C>T	c.(946-948)CTC>CTT	p.L316L	NDOR1_uc004clx.2_Silent_p.L316L|NDOR1_uc011mes.1_Silent_p.L316L|NDOR1_uc004cly.2_Silent_p.L282L	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	316	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		TCTTCGAACTCCTGGCCTGTC	0.637													34	3					0	0	0.010818	0	0
CACNA1B	774	broad.mit.edu	37	9	140946556	140946556	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr9:140946556G>A	uc004cog.2	+	25	3868	c.3723G>A	c.(3721-3723)GGG>GGA	p.G1241G	CACNA1B_uc011mfd.1_Silent_p.G771G|CACNA1B_uc004coi.2_Silent_p.G455G	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1241	Extracellular (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GATCCAAAGGGAAAGACATCA	0.577													10	0					0	0	0.010729	0	0
SHOX	6473	broad.mit.edu	37	X	591781	591781	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:591781G>A	uc004cph.1	+	2	840	c.149G>A	c.(148-150)GGG>GAG	p.G50E	SHOX_uc004cpi.2_Missense_Mutation_p.G50E	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	50					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGGAGCTGGGGACGTCGGAT	0.607													40	60					0	0	0.006999	0	0
CRLF2	64109	broad.mit.edu	37	X	1321372	1321372	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:1321372G>A	uc004cpm.1	-	4		c.383C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CTGATGCCACGAAAATCTCAC	0.547			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								38	40					0	0	0.010771	0	0
ARSF	416	broad.mit.edu	37	X	3021866	3021866	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:3021866G>A	uc004cre.1	+	9	1387	c.1166G>A	c.(1165-1167)GGA>GAA	p.G389E	ARSF_uc004crf.1_Missense_Mutation_p.G389E	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	389						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGATGGCCTGGAAAGGTACCA	0.483													12	32					0	0	0.016723	0	0
MXRA5	25878	broad.mit.edu	37	X	3238414	3238414	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:3238414C>T	uc004crg.3	-	5	5469	c.5312G>A	c.(5311-5313)AGG>AAG	p.R1771K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1771						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGAATGTATCCTGTTGTAGGA	0.522													12	22					0	0	0.016723	0	0
MXRA5	25878	broad.mit.edu	37	X	3241038	3241038	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:3241038C>T	uc004crg.3	-	5	2845	c.2688G>A	c.(2686-2688)GAG>GAA	p.E896E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	896						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AAGTTATCTCCTCAGTCTTCT	0.468													29	31					0	0	0.008361	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821216	5821216	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:5821216C>T	uc010ndh.2	-	5	2004	c.1503G>A	c.(1501-1503)ATG>ATA	p.M501I	NLGN4X_uc004crp.2_Missense_Mutation_p.M521I|NLGN4X_uc004crq.2_Missense_Mutation_p.M501I|NLGN4X_uc010ndi.2_Missense_Mutation_p.M538I|NLGN4X_uc004crr.2_Missense_Mutation_p.M501I|NLGN4X_uc010ndj.2_Missense_Mutation_p.M501I	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	501	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TGGGACCGATCATGGGGATGC	0.532													28	23					0	0	0.004656	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821348	5821348	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:5821348G>A	uc010ndh.2	-	5	1872	c.1371C>T	c.(1369-1371)GCC>GCT	p.A457A	NLGN4X_uc004crp.2_Silent_p.A477A|NLGN4X_uc004crq.2_Silent_p.A457A|NLGN4X_uc010ndi.2_Silent_p.A494A|NLGN4X_uc004crr.2_Silent_p.A457A|NLGN4X_uc010ndj.2_Silent_p.A457A	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	457	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CGTGCAGGTCGGCGGTGGCCA	0.617													21	12					0	0	0.014323	0	0
MID1	4281	broad.mit.edu	37	X	10423070	10423070	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:10423070C>T	uc004cte.3	-	9	1686	c.1495G>A	c.(1495-1497)GTG>ATG	p.V499M	MID1_uc004ctd.3_Missense_Mutation_p.V210M|MID1_uc004ctg.3_Missense_Mutation_p.V499M|MID1_uc004cth.3_Missense_Mutation_p.V461M|MID1_uc004ctk.3_Missense_Mutation_p.V499M|MID1_uc004cti.3_Missense_Mutation_p.V499M|MID1_uc004ctj.3_Missense_Mutation_p.V499M|MID1_uc011mie.1_RNA|MID1_uc004csz.3_Missense_Mutation_p.V171M|MID1_uc004cta.3_Missense_Mutation_p.V255M|MID1_uc004ctb.3_Missense_Mutation_p.V159M|MID1_uc004ctc.3_Missense_Mutation_p.V266M	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	499	B30.2/SPRY.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						TCATGGGACACCTTCAGTTTT	0.433													14	34					0	0	0.003163	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734426	12734426	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:12734426C>T	uc004cuz.1	+	15	2354	c.1848C>T	c.(1846-1848)GCC>GCT	p.A616A	FRMPD4_uc011mij.1_Silent_p.A608A	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	616					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CCGGGGAGGCCCCCTGTGAGG	0.537													19	55					0	0	0.006122	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735169	12735169	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:12735169G>A	uc004cuz.1	+	15	3097	c.2591G>A	c.(2590-2592)GGA>GAA	p.G864E	FRMPD4_uc011mij.1_Missense_Mutation_p.G856E	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	864					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TGTGAGAAGGGACTGGATAAT	0.542													12	41					0	0	0.016723	0	0
TLR7	51284	broad.mit.edu	37	X	12906353	12906353	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:12906353T>C	uc004cvc.2	+	3	2865	c.2726T>C	c.(2725-2727)TTG>TCG	p.L909S		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	909	TIR.|Cytoplasmic (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	GAGTGGGTTTTGGCTGAGCTG	0.463													48	43					0	0	0.014410	0	0
FAM9C	171484	broad.mit.edu	37	X	13057999	13057999	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:13057999C>T	uc004cvh.1	-	6	576	c.366G>A	c.(364-366)CCG>CCA	p.P122P	FAM9C_uc004cvg.2_Silent_p.P122P	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C	122						nucleus					0						CAAGGACATTCGGCAACTTCA	0.363													18	48					0	0	0.014323	0	0
GRPR	2925	broad.mit.edu	37	X	16170386	16170386	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:16170386C>T	uc004cxj.2	+	3	1426	c.773C>T	c.(772-774)TCC>TTC	p.S258F		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	258	Cytoplasmic (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					TAGATTGAATCCCGGAAGCGA	0.502													21	55					0	0	0.012319	0	0
NHS	4810	broad.mit.edu	37	X	17744950	17744950	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:17744950C>T	uc004cxx.2	+	6	2999	c.2661C>T	c.(2659-2661)ACC>ACT	p.T887T	NHS_uc011mix.1_Silent_p.T908T|NHS_uc004cxy.2_Silent_p.T731T|NHS_uc004cxz.2_Silent_p.T710T|NHS_uc004cya.2_Silent_p.T610T	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	887						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					ATCTTCCCACCAAGCAGGAAC	0.473													30	46					0	0	0.013726	0	0
PPEF1	5475	broad.mit.edu	37	X	18824656	18824656	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:18824656C>T	uc004cyq.2	+	15	1868	c.1387C>T	c.(1387-1389)CGC>TGC	p.R463C	PPEF1_uc004cyp.2_Missense_Mutation_p.R435C|PPEF1_uc004cyr.2_Missense_Mutation_p.R401C|PPEF1_uc004cys.2_Missense_Mutation_p.R463C|PPEF1_uc011mja.1_Missense_Mutation_p.R398C|PPEF1_uc011mjb.1_Missense_Mutation_p.R407C	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	463					detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					TCAGCCTCTTCGCCAAAGGTG	0.478													35	44					0	0	0.017118	0	0
MAP3K15	389840	broad.mit.edu	37	X	19416401	19416401	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:19416401C>T	uc004czk.1	-	16	2071	c.434G>A	c.(433-435)CGA>CAA	p.R145Q	MAP3K15_uc004czj.1_Missense_Mutation_p.R105Q	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	670	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GCTCAGATCTCGGCCAGCATA	0.502													36	111					0	0	0.006230	0	0
MAP7D2	256714	broad.mit.edu	37	X	20071000	20071000	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:20071000G>A	uc004czr.1	-	5	610	c.591C>T	c.(589-591)GAC>GAT	p.D197D	MAP7D2_uc004czq.1_Silent_p.D90D|MAP7D2_uc011mji.1_Silent_p.D153D|MAP7D2_uc010nfo.1_Silent_p.D197D|MAP7D2_uc011mjj.1_Intron|MAP7D2_uc004czs.1_Silent_p.D186D	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	197										ovary(2)|breast(1)	3						ACTTGCCTCGGTCTGGGGAAT	0.453													15	39					0	0	0.004007	0	0
PCYT1B	9468	broad.mit.edu	37	X	24580541	24580541	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:24580541T>A	uc004dbi.2	-	8	1212	c.979A>T	c.(979-981)AGC>TGC	p.S327C	PCYT1B_uc004dbk.3_Intron|PCYT1B_uc004dbj.2_Missense_Mutation_p.S309C	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	327						endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	GGGGACCGGCTCCGGGTTGGG	0.592													8	14					0	0	0.004482	0	0
POLA1	5422	broad.mit.edu	37	X	24828029	24828029	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:24828029G>A	uc004dbl.2	+	27	2984	c.2961G>A	c.(2959-2961)ACG>ACA	p.T987T		NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	987					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	TGATGCATACGAAAGAGATGG	0.279													4	13					0	0	0.001168	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157282	26157282	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:26157282C>T	uc004dbq.1	+	2	367	c.180C>T	c.(178-180)ATC>ATT	p.I60I		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	60							protein binding			central_nervous_system(1)	1						CACCTAGCATCCCTGAAGCGC	0.537													9	25					0	0	0.008291	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998893	27998893	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:27998893G>A	uc004dbx.1	-	1	674	c.559C>T	c.(559-561)CGC>TGC	p.R187C		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	187										ovary(3)|skin(1)	4						TACTGCAGGCGGAAACGCTGC	0.557													7	7					0	0	0.003080	0	0
FTHL17	53940	broad.mit.edu	37	X	31089935	31089935	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:31089935C>T	uc004dcl.1	-	1	239	c.136G>A	c.(136-138)GAC>AAC	p.D46N		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	46	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						AGGGCCACGTCGTCCCGGTTG	0.587													10	53					0	0	0.010729	0	0
DMD	1756	broad.mit.edu	37	X	32662369	32662369	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:32662369C>T	uc004dda.1	-	11	1455	c.1211G>A	c.(1210-1212)AGT>AAT	p.S404N	DMD_uc004dcz.2_Missense_Mutation_p.S281N|DMD_uc004dcy.1_Missense_Mutation_p.S400N|DMD_uc004ddb.1_Missense_Mutation_p.S396N|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.S396N|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron|MIR548F5_hsa-mir-548f-5|MI0006378_5'Flank	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	404	Spectrin 1.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AATCAGCTTACTTCCCAATTG	0.403													14	42					0	0	0.004990	0	0
CXorf22	170063	broad.mit.edu	37	X	35944275	35944275	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:35944275C>T	uc004ddj.2	+	2	450	c.391C>T	c.(391-393)CCT>TCT	p.P131S	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	131										large_intestine(1)|lung(1)|ovary(1)	3						AACAGAAATTCCTCTAATTGG	0.318													3	17					0	0	0.004672	0	0
CXorf22	170063	broad.mit.edu	37	X	35974253	35974253	+	Silent	SNP	A	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:35974253A>G	uc004ddj.2	+	8	1409	c.1350A>G	c.(1348-1350)AAA>AAG	p.K450K	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	450										large_intestine(1)|lung(1)|ovary(1)	3						ACCACTTTAAAAAAACTGCAA	0.353													9	14					0	0	0.004482	0	0
FAM47C	442444	broad.mit.edu	37	X	37026802	37026802	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:37026802C>T	uc004ddl.1	+	1	333	c.319C>T	c.(319-321)CTC>TTC	p.L107F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	107										ovary(3)	3						GTTTTCCAAGCTCTCGCCAGC	0.532													29	33					0	0	0.007291	0	0
FAM47C	442444	broad.mit.edu	37	X	37028267	37028268	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:37028267_37028268CC>TT	uc004ddl.1	+	1	1798_1799	c.1784_1785CC>TT	c.(1783-1785)CCC>CTT	p.P595L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	595										ovary(3)	3						TCCAGTCTCCCCCCGGAGCCCC	0.649													4	28					0	0	0.004672	0	0
FAM47C	442444	broad.mit.edu	37	X	37029212	37029212	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:37029212A>T	uc004ddl.1	+	1	2743	c.2729A>T	c.(2728-2730)AAA>ATA	p.K910I		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	910										ovary(3)	3						GATGAGGTCAAATTCTTCTCA	0.458													13	32					0	0	0.016723	0	0
SYTL5	94122	broad.mit.edu	37	X	37913546	37913546	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:37913546G>A	uc004ddu.2	+	4	734	c.200G>A	c.(199-201)TGT>TAT	p.C67Y	SYTL5_uc004ddv.2_Missense_Mutation_p.C67Y|SYTL5_uc004ddx.2_Missense_Mutation_p.C67Y	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	67	FYVE-type.|RabBD.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						TGTGTTCACTGTCACAGAAAC	0.498													7	31					0	0	0.001984	0	0
SLC9A7	84679	broad.mit.edu	37	X	46472823	46472823	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:46472823C>T	uc004dgu.1	-	16	1835	c.1827G>A	c.(1825-1827)CTG>CTA	p.L609L		NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	609					regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						GGATGGGCTTCAGGTAACTTT	0.463													20	45					0	0	0.004656	0	0
ZNF157	7712	broad.mit.edu	37	X	47272815	47272815	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:47272815G>A	uc004dhr.1	+	4	1412	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	448	C2H2-type 11.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGTGAATGTGGAAATGCCTTC	0.433													4	21					0	0	0.014758	0	0
ZNF81	347344	broad.mit.edu	37	X	47774409	47774409	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:47774409G>A	uc010nhy.1	+	6	732	c.364G>A	c.(364-366)GAT>AAT	p.D122N		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	122						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				AGACACAAGAGATGATTCATT	0.363													7	15					0	0	0.001984	0	0
ZNF630	57232	broad.mit.edu	37	X	47918214	47918214	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:47918214C>T	uc004div.3	-	5	1869	c.1617G>A	c.(1615-1617)GGG>GGA	p.G539G	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Silent_p.G415G	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	539					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						AGGGTTTCTCCCCTGTGTGAA	0.448													3	8					0	0	0.004672	0	0
ZNF630	57232	broad.mit.edu	37	X	47919159	47919159	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:47919159C>T	uc004div.3	-	5	924	c.672G>A	c.(670-672)AAG>AAA	p.K224K	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Silent_p.K100K	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	224					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						TGAAGCCTTCCTTCTCAGGCA	0.398													14	30					0	0	0.002450	0	0
SSX3	10214	broad.mit.edu	37	X	48209480	48209480	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:48209480C>T	uc004djd.1	-	6	502	c.408G>A	c.(406-408)GGG>GGA	p.G136G	SSX3_uc004dje.2_Silent_p.G136G	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						ACAGCTGTTTCCCATCGTTTT	0.473													41	129					0	0	0.010771	0	0
SSX3	10214	broad.mit.edu	37	X	48214615	48214615	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:48214615C>T	uc004djd.1	-	2	163	c.69_splice	c.e2+1	p.K23_splice	SSX3_uc004dje.2_Splice_Site_p.K23_splice|SSX3_uc010nic.2_Splice_Site_p.K23_splice	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GGTCACCTCACCTTTTGTATC	0.542													24	47					0	0	0.004656	0	0
TBC1D25	4943	broad.mit.edu	37	X	48418940	48418940	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:48418940C>T	uc004dka.1	+	6	1755	c.1644C>T	c.(1642-1644)GAC>GAT	p.D548D	TBC1D25_uc011mly.1_Silent_p.D490D|TBC1D25_uc004dkb.1_Silent_p.D294D|TBC1D25_uc011mlz.1_Silent_p.D294D|TBC1D25_uc011mma.1_Silent_p.D294D|TBC1D25_uc004dkc.1_Silent_p.D294D|TBC1D25_uc011mmb.1_Silent_p.D552D|TBC1D25_uc011mmc.1_Silent_p.D294D|TBC1D25_uc011mmd.1_Silent_p.D294D	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	548						intracellular	Rab GTPase activator activity			ovary(1)	1						ACTCCCCAGACCCACTGCTCT	0.582													14	44					0	0	0.002450	0	0
HDAC6	10013	broad.mit.edu	37	X	48674977	48674977	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:48674977C>T	uc011mmi.1	+	19	1823	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	HDAC6_uc004dks.1_Silent_p.F576F|HDAC6_uc010nig.1_Silent_p.F424F|HDAC6_uc004dkt.1_Silent_p.F576F|HDAC6_uc011mmk.1_Silent_p.F557F|HDAC6_uc004dkv.1_Silent_p.F224F|HDAC6_uc004dkw.1_Silent_p.F224F|HDAC6_uc004dkx.1_5'Flank	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	576	Histone deacetylase 2.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CCAGTACCTTCGCCTGTGCAC	0.602													18	13					0	0	0.008871	0	0
KCND1	3750	broad.mit.edu	37	X	48823477	48823477	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:48823477C>T	uc004dlx.1	-	2	2731	c.1158G>A	c.(1156-1158)AAG>AAA	p.K386K	KCND1_uc004dlw.1_Silent_p.K9K	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	386						voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						ACCCGAAAATCTTGCCAGCAA	0.572													8	19					0	0	0.006214	0	0
GAGE10	643832	broad.mit.edu	37	X	49161411	49161411	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:49161411C>T	uc010nir.1	+	2	189	c.73C>T	c.(73-75)CCT>TCT	p.P25S		NM_001098413	NP_001091883	A6NGK3	GAG10_HUMAN	G antigen 10	25											0	Ovarian(276;0.236)					AATGATTGGGCCTATGCTGGT	0.398													35	168					0	0	0.006230	0	0
CCNB3	85417	broad.mit.edu	37	X	50094635	50094635	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:50094635C>T	uc004dox.3	+	13	4419	c.4121C>T	c.(4120-4122)GCC>GTC	p.A1374V	CCNB3_uc004doy.2_Missense_Mutation_p.A1374V|CCNB3_uc004doz.2_Missense_Mutation_p.A270V|CCNB3_uc010njq.2_Missense_Mutation_p.A266V|CCNB3_uc004dpa.2_Missense_Mutation_p.A213V	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1374					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AAAATCCCTGCCTTGGATATG	0.483													13	22					0	0	0.002450	0	0
HEPH	9843	broad.mit.edu	37	X	65393461	65393461	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:65393461C>T	uc011moz.1	+	4	512	c.452C>T	c.(451-453)CCA>CTA	p.P151L	HEPH_uc004dwn.2_Missense_Mutation_p.P151L|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Missense_Mutation_p.P151L|HEPH_uc011mpa.1_Missense_Mutation_p.P151L	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	148	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TCCTCTGGGCCACTGAAAGCT	0.527													3	17					0	0	0.014758	0	0
TSIX	9383	broad.mit.edu	37	X	73043857	73043857	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:73043857G>A	uc004ebn.2	+	1		c.31818G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GTTCAATAATGATAATAAATG	0.289													8	5					0	0	0.003080	0	0
XIST	7503	broad.mit.edu	37	X	73063804	73063804	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:73063804G>A	uc004ebm.1	-	1		c.8785C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCCTTGGAGGGAAACAGTATA	0.383													13	3					0	0	0.016723	0	0
XIST	7503	broad.mit.edu	37	X	73069151	73069151	+	RNA	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:73069151G>A	uc004ebm.1	-	1		c.3438C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TCCAACAAAAGACGGGTTGTC	0.438													18	15					0	0	0.010504	0	0
XIST	7503	broad.mit.edu	37	X	73071822	73071822	+	RNA	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:73071822C>T	uc004ebm.1	-	1		c.767G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TTTTTTCATCCATAAAAAGCA	0.438													9	5					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	X	80185618	80185618	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:80185618C>T	uc004eec.1	+	1	691	c.517C>T	c.(517-519)CTT>TTT	p.L173F						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CACCGTCAATCTTGCCTGGAC	0.493													34	25					0	0	0.006230	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104961433	104961433	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:104961433G>A	uc004elz.1	+	7	1602	c.846G>A	c.(844-846)ATG>ATA	p.M282I		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	282	Ig-like C2-type 3.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						TCTACTGGATGAAAGGAGAAA	0.423													35	19					0	0	0.017118	0	0
CXorf57	55086	broad.mit.edu	37	X	105891583	105891584	+	Missense_Mutation	DNP	GG	AA	AA	rs142495888	byFrequency	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:105891583_105891584GG>AA	uc004emi.3	+	11	2096_2097	c.1945_1946GG>AA	c.(1945-1947)GGA>AAA	p.G649K	CXorf57_uc004emj.3_Missense_Mutation_p.G552K	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	649										ovary(1)|lung(1)|breast(1)	3						ACAAACAAAGGGAATTAAACCG	0.312													29	11					0	0	0.004672	0	0
ATG4A	115201	broad.mit.edu	37	X	107381055	107381055	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:107381055C>T	uc004enr.2	+	8	692	c.569C>T	c.(568-570)CCC>CTC	p.P190L	ATG4A_uc004ent.2_Missense_Mutation_p.P190L|ATG4A_uc004ens.2_Missense_Mutation_p.P106L|ATG4A_uc011msl.1_Missense_Mutation_p.P106L|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.P106L	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	190					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						CGTGTCCTTCCCTTGAGTGCT	0.468													53	35					0	0	0.014410	0	0
COL4A5	1287	broad.mit.edu	37	X	107846276	107846276	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:107846276C>T	uc004enz.1	+	28	2431	c.2229C>T	c.(2227-2229)GGC>GGT	p.G743G	COL4A5_uc011mso.1_Silent_p.G743G|COL4A5_uc004eob.1_Silent_p.G351G	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	743	Triple-helical region.		G -> D (in APSX).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCCACCCGGCTTTCCAGGAC	0.458									Alport_syndrome_with_Diffuse_Leiomyomatosis				3	4					0	0	0.009096	0	0
ACSL4	2182	broad.mit.edu	37	X	108902616	108902616	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:108902616T>A	uc004eoi.2	-	16	2450	c.1945A>T	c.(1945-1947)ATA>TTA	p.I649L	ACSL4_uc004eoj.2_Missense_Mutation_p.I608L|ACSL4_uc004eok.2_Missense_Mutation_p.I608L	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	649	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	TCTTTCAGTATTTCAGCTTCC	0.398													51	17					0	0	0.014410	0	0
CHRDL1	91851	broad.mit.edu	37	X	109943931	109943931	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:109943931C>T	uc004eou.3	-	7	909	c.560G>A	c.(559-561)TGG>TAG	p.W187*	CHRDL1_uc004eov.2_Nonsense_Mutation_p.W181*|CHRDL1_uc004eow.2_Nonsense_Mutation_p.W186*|CHRDL1_uc010nps.2_Nonsense_Mutation_p.W186*|CHRDL1_uc004eot.2_Nonsense_Mutation_p.W107*|CHRDL1_uc011mss.1_Nonsense_Mutation_p.W101*	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	180					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						AGAATGTTCCCATGACAGTTC	0.398													22	14					0	0	0.014323	0	0
KLHL13	90293	broad.mit.edu	37	X	117033005	117033005	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:117033005C>T	uc004eql.2	-	7	1896	c.1834G>A	c.(1834-1836)GAT>AAT	p.D612N	KLHL13_uc004eqk.2_Missense_Mutation_p.D561N|KLHL13_uc011mtn.1_Missense_Mutation_p.D452N|KLHL13_uc011mto.1_Missense_Mutation_p.D606N|KLHL13_uc011mtp.1_Missense_Mutation_p.D614N|KLHL13_uc004eqm.2_Missense_Mutation_p.D561N|KLHL13_uc011mtq.1_Missense_Mutation_p.D596N	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	612	Kelch 6.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TCATCTTTATCTGGATCATAT	0.423													28	13					0	0	0.009535	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969226	140969226	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:140969226G>A	uc011mwp.1	+	4	553	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	185	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTATACACTGGATGAAAAGGT	0.443													31	17					0	0	0.008361	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995461	140995461	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:140995461G>A	uc004fbt.2	+	4	2557	c.2271G>A	c.(2269-2271)CAG>CAA	p.Q757Q	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	757							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTCTTCCCCAGAGTTTCCCTG	0.542										HNSCC(15;0.026)			71	30					0	0	0.014410	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717341	142717341	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:142717341C>T	uc004fbx.2	-	2	1960	c.1584G>A	c.(1582-1584)TTG>TTA	p.L528L	SLITRK4_uc004fby.2_Silent_p.L528L	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	528	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGTTGCCCTCCAAGTCAATCT	0.478													48	33					0	0	0.014410	0	0
MIR891A	100126341	broad.mit.edu	37	X	145109382	145109383	+	RNA	DNP	GG	AA	AA			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:145109382_145109383GG>AA	hsa-mir-891a|MI0005524	-			c.8_9GG>AA																				0						TTCGTTGCAAGGATTAAGGAGA	0.317													14	8					0	0	0.004672	0	0
CNGA2	1260	broad.mit.edu	37	X	150912578	150912578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:150912578C>T	uc004fey.1	+	7	1827	c.1603C>T	c.(1603-1605)CGA>TGA	p.R535*		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	535	cAMP (By similarity).|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AATGGGCAATCGACGCACAGC	0.498													34	55					0	0	0.006230	0	0
GABRA3	2556	broad.mit.edu	37	X	151376557	151376557	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:151376557C>T	uc010ntk.1	-	7	934	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	232	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTGCCACTTCCACGGATTTG	0.423													20	25					0	0	0.014323	0	0
GABRA3	2556	broad.mit.edu	37	X	151424446	151424446	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:151424446G>A	uc010ntk.1	-	5	595	c.355C>T	c.(355-357)CGG>TGG	p.R119W		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	119	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CATGTCTGCCGAAAAAATACA	0.423													12	35					0	0	0.010729	0	0
GABRQ	55879	broad.mit.edu	37	X	151820005	151820005	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:151820005C>T	uc004ffp.1	+	8	938	c.918C>T	c.(916-918)CTC>CTT	p.L306L		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	306						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCAATGCTCATCCTGACCA	0.468													16	65					0	0	0.004007	0	0
CETN2	1069	broad.mit.edu	37	X	151997739	151997739	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:151997739C>T	uc004fgq.2	-	3	292	c.245G>A	c.(244-246)GGA>GAA	p.G82E	CETN2_uc004fgr.2_Missense_Mutation_p.G11E|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	82	EF-hand 2.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GTTCATTTTTCCTGTCCCTTC	0.398								Direct_reversal_of_damage|NER					10	51					0	0	0.010729	0	0
L1CAM	3897	broad.mit.edu	37	X	153137769	153137769	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:153137769C>G	uc004fjb.2	-	4	346	c.238G>C	c.(238-240)GAA>CAA	p.E80Q	L1CAM_uc004fjc.2_Missense_Mutation_p.E80Q|L1CAM_uc010nuo.2_Missense_Mutation_p.E75Q|L1CAM_uc004fjd.1_5'Flank|L1CAM_uc004fje.1_Missense_Mutation_p.E75Q	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	80	Extracellular (Potential).|Ig-like C2-type 1.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCAGCTCTTCCTTGGGTTTG	0.607													5	23					0	0	0.001168	0	0
HCFC1	3054	broad.mit.edu	37	X	153224842	153224842	+	Silent	SNP	G	A	A	rs114030669	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:153224842G>A	uc004fjp.2	-	9	2073	c.1545C>T	c.(1543-1545)ACC>ACT	p.T515T		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	515					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGGTCACGGTGACAGGGG	0.612													27	42					0	0	0.006320	0	0
PLXNA3	55558	broad.mit.edu	37	X	153697006	153697006	+	Silent	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:153697006G>A	uc004flm.2	+	24	4394	c.4221G>A	c.(4219-4221)AGG>AGA	p.R1407R		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1407	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTTGCCCTAGGACAGAGTCAG	0.632													18	46					0	0	0.004990	0	0
GAB3	139716	broad.mit.edu	37	X	153944592	153944592	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:153944592G>A	uc004fmj.1	-	2	133	c.85C>T	c.(85-87)CGC>TGC	p.R29C	GAB3_uc004fmk.1_Missense_Mutation_p.R29C|GAB3_uc010nve.1_Missense_Mutation_p.R29C|GAB3_uc004fml.1_5'UTR	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	29	PH.									ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ACAAACCAGCGCTTGCGCCAG	0.537													9	22					0	0	0.006214	0	0
FUNDC2	65991	broad.mit.edu	37	X	154282917	154282917	+	Silent	SNP	C	T	T			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:154282917C>T	uc004fmw.2	+	5	690	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_023934	NP_076423	Q9BWH2	FUND2_HUMAN	FUN14 domain containing 2	180						mitochondrion					0	all_cancers(53;3.51e-17)|all_epithelial(53;5.13e-11)|all_lung(58;3.84e-07)|Lung NSC(58;1.2e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GGGGATTTTTCGGAGGCTTTC	0.418													16	84					0	0	0.010504	0	0
SPRY3	10251	broad.mit.edu	37	X	155004072	155004072	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chrX:155004072G>A	uc004fnq.1	+	2	993	c.539G>A	c.(538-540)AGC>AAC	p.S180N	SPRY3_uc010nvl.1_Intron	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	180	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCTGCTGAGAGCCTCCTCGAT	0.582													20	78					0	0	0.010504	0	0
GPR123	84435	broad.mit.edu	37	10	134886614	134886614	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr10:134886614delG	uc001llw.2	+	3	648	c.648delG	c.(646-648)CTGfs	p.L216fs				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CGCTGGAGCTGGGTGCCCAGG	0.711													10	2	---	---	---	---					
PVRL1	5818	broad.mit.edu	37	11	119535677	119535678	+	In_Frame_Ins	INS	-	CCT	CCT	rs137909701	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr11:119535677_119535678insCCT	uc001pwv.2	-	6	1505_1506	c.1333_1334insAGG	c.(1333-1335)GGC>GAGGGC	p.444_445insE	PVRL1_uc001pwu.1_Intron	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	444_445	Poly-Gly.|Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		CCCTCCACCGCcctcctcctcc	0.574													3	4	---	---	---	---					
GPR133	283383	broad.mit.edu	37	12	131605434	131605434	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr12:131605434delA	uc001uit.3	+	20	2710	c.2151delA	c.(2149-2151)GTAfs	p.V717fs	GPR133_uc010tbm.1_Frame_Shift_Del_p.V749fs|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	717	Helical; Name=5; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GGGCCTTTGTAGCCCCTGCCC	0.627													16	69	---	---	---	---					
RDH11	51109	broad.mit.edu	37	14	68159693	68159695	+	In_Frame_Del	DEL	TAT	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr14:68159693_68159695delTAT	uc001xjv.3	-	2	239_241	c.149_151delATA	c.(148-153)AATACA>ACA	p.N50del	RDH11_uc001xjw.3_In_Frame_Del_p.N50del|RDH11_uc001xjx.3_In_Frame_Del_p.N50del	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	50	NADP (By similarity).|Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	CCGATACCTGTATTAGCTCCTGT	0.488													9	35	---	---	---	---					
ITGAL	3683	broad.mit.edu	37	16	30531249	30531251	+	In_Frame_Del	DEL	GCT	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:30531249_30531251delGCT	uc002dyi.3	+	30	3476_3478	c.3300_3302delGCT	c.(3298-3303)GGGCTG>GGG	p.L1106del	ITGAL_uc002dyj.3_In_Frame_Del_p.L1022del|ITGAL_uc010vev.1_In_Frame_Del_p.L340del	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1106	Helical; (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GCATCGGGGGGCTGCTGCTGCTG	0.601													7	140	---	---	---	---					
ATP2C2	9914	broad.mit.edu	37	16	84486756	84486757	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr16:84486756_84486757insC	uc002fhx.2	+	19	1933_1934	c.1844_1845insC	c.(1843-1845)GGCfs	p.G615fs	ATP2C2_uc010chj.2_Frame_Shift_Ins_p.G615fs|ATP2C2_uc002fhy.2_Frame_Shift_Ins_p.G632fs|ATP2C2_uc002fhz.2_Frame_Shift_Ins_p.G464fs	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	615	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AGAAACATCGGCCTGTGCAACG	0.673													4	6	---	---	---	---					
COX10	1352	broad.mit.edu	37	17	14110234	14110235	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr17:14110234_14110235delTC	uc002gof.3	+	7	1240_1241	c.1036_1037delTC	c.(1036-1038)TCGfs	p.S346fs	COX10_uc010vvs.1_Frame_Shift_Del_p.S129fs|COX10_uc010vvt.1_Frame_Shift_Del_p.S154fs	NM_001303	NP_001294	Q12887	COX10_HUMAN	heme A:farnesyltransferase precursor	346					heme a biosynthetic process|heme O biosynthetic process|respiratory chain complex IV assembly	integral to membrane|mitochondrial membrane	protoheme IX farnesyltransferase activity				0		all_lung(20;0.06)|Lung SC(565;0.168)		UCEC - Uterine corpus endometrioid carcinoma (92;0.106)		CTGCATGATGTCGGTCACCCAC	0.658													19	60	---	---	---	---					
CDC42EP1	11135	broad.mit.edu	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	-	-	rs66468174	by1000genomes	TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr22:37964409_37964429delCAGCGCCTGCTGCAAACCCCT	uc003asz.3	+	3	1161_1181	c.758_778delCAGCGCCTGCTGCAAACCCCT	c.(757-780)CCAGCGCCTGCTGCAAACCCCTCA>CCA	p.APAANPS254del		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	254_260	6.|8 X 7 AA tandem repeats of [PT]-[AT]-A- [ENT]-[PT]-[PTS]-[AG].				positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					GCAAACCCCCCAGCGCCTGCTGCAAACCCCTCAGCACCTGC	0.665													5	9	---	---	---	---					
PDZD2	23037	broad.mit.edu	37	5	32087839	32087851	+	Frame_Shift_Del	DEL	AGCTTCATCAAGG	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr5:32087839_32087851delAGCTTCATCAAGG	uc003jhl.2	+	20	4673_4685	c.4285_4297delAGCTTCATCAAGG	c.(4285-4299)AGCTTCATCAAGGAGfs	p.S1429fs	PDZD2_uc003jhm.2_Frame_Shift_Del_p.S1429fs	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1429_1433					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGACATTGACAGCTTCATCAAGGAGCTGGATGC	0.620													10	26	---	---	---	---					
HMGCLL1	54511	broad.mit.edu	37	6	55304296	55304296	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:55304296delC	uc003pcn.2	-	9	1106	c.947delG	c.(946-948)GGTfs	p.G316fs	HMGCLL1_uc003pco.2_Frame_Shift_Del_p.G286fs|HMGCLL1_uc010jzx.2_Frame_Shift_Del_p.G187fs|HMGCLL1_uc011dxc.1_Frame_Shift_Del_p.G254fs|HMGCLL1_uc011dxd.1_Frame_Shift_Del_p.G183fs|HMGCLL1_uc011dxe.1_Frame_Shift_Del_p.G120fs	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	316							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCCAGAAGCACCTTTTGCATA	0.408													14	49	---	---	---	---					
PHIP	55023	broad.mit.edu	37	6	79708059	79708060	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FS-A1ZA-06A-11D-A197-08	TCGA-FS-A1ZA-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1506237-707c-48e4-b29e-3110d328b047	2de9e38c-c2f7-4ea8-b501-fab947101dea	g.chr6:79708059_79708060insA	uc003pir.2	-	18	2154_2155	c.1928_1929insT	c.(1927-1929)CTGfs	p.L643fs	PHIP_uc011dyp.1_Frame_Shift_Ins_p.L643fs	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	643					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		TCATGCTGTCCAGTGGGCTGAT	0.401													17	31	---	---	---	---					
