Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WDR8	49856	broad.mit.edu	37	1	3551763	3551763	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:3551763G>A	uc001ako.2	-	7	807	c.699C>T	c.(697-699)CCC>CCT	p.P233P	WDR8_uc001akn.3_Silent_p.P233P|WDR8_uc010nzi.1_3'UTR	NM_017818	NP_060288	Q9P2S5	WRP73_HUMAN	WD repeat domain 8	233	WD 4.					centrosome	protein binding				0	all_cancers(77;0.0128)|all_epithelial(69;0.00526)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;4.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;4.16e-22)|GBM - Glioblastoma multiforme(42;1.05e-14)|Colorectal(212;1.19e-05)|BRCA - Breast invasive adenocarcinoma(365;2.67e-05)|COAD - Colon adenocarcinoma(227;5.82e-05)|Kidney(185;0.000364)|KIRC - Kidney renal clear cell carcinoma(229;0.00223)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		ACTGACTGCTGGGGCTCCAGG	0.602000													10	15					0	0	0.00010058	0	0
LOC440563	440563	broad.mit.edu	37	1	13183615	13183615	+	Silent	SNP	T	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:13183615T>C	uc010obg.1	-	1	353	c.258A>G	c.(256-258)GCA>GCG	p.A86A		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	86						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CTTTTGGCTCTGCAGCCAGGT	0.493000													4	51					0	0	0.00024832	0	0
TMEM57	55219	broad.mit.edu	37	1	25784926	25784926	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:25784926C>A	uc001bkk.2	+	6	899	c.697C>A	c.(697-699)CAC>AAC	p.H233N	TMEM57_uc009vru.2_Intron|TMEM57_uc009vrv.2_Intron|TMEM57_uc009vrt.2_RNA	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	233						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTATACACCACAATGGAGG	0.403000													12	188					0.000219431	0.00376284	0.000219431	1	0
HIVEP3	59269	broad.mit.edu	37	1	42046221	42046221	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:42046221C>T	uc001cgz.3	-	4	5461	c.4248G>A	c.(4246-4248)TTG>TTA	p.L1416L	HIVEP3_uc001cha.3_Silent_p.L1416L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1416					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CCTCCAGGCTCAAGATACTCT	0.493000													34	54					0	0	0.00058488	0	0
TIE1	7075	broad.mit.edu	37	1	43777681	43777681	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:43777681C>T	uc001ciu.2	+	11	1588	c.1509C>T	c.(1507-1509)AAC>AAT	p.N503N	TIE1_uc010okd.1_Silent_p.N503N|TIE1_uc010oke.1_Silent_p.N458N|TIE1_uc009vwq.2_Silent_p.N459N|TIE1_uc010okf.1_Silent_p.N148N|TIE1_uc010okg.1_Silent_p.N148N	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	503	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCAGTGAGAACGTGACGTTAA	0.607000													11	37					0	0	0.000219431	0	0
PTCH2	8643	broad.mit.edu	37	1	45292179	45292179	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:45292179G>A	uc010olf.1	-	18	2969	c.2957C>T	c.(2956-2958)CCC>CTC	p.P986L	PTCH2_uc010olg.1_Missense_Mutation_p.P684L	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	986	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					AGCCGTCCAGGGGTTGAGGAG	0.632000									Basal_Cell_Nevus_syndrome				7	10					0	0	8.12818e-05	0	0
IL23R	149233	broad.mit.edu	37	1	67635191	67635191	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:67635191G>A	uc001ddo.2	+	3	322	c.237G>A	c.(235-237)AGG>AGA	p.R79R	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_5'UTR|IL23R_uc010opk.1_Silent_p.R36R|IL23R_uc010opl.1_5'UTR|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_5'UTR|IL23R_uc010opn.1_5'UTR|IL23R_uc001ddr.2_RNA	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	79	Extracellular (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						AAATCACAAGGATTAATAAAA	0.348000													47	87					0	0	0.000147903	0	0
CRYZ	1429	broad.mit.edu	37	1	75172593	75172593	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:75172593G>A	uc001dgk.2	-	9	1323	c.818C>T	c.(817-819)TCC>TTC	p.S273F	CRYZ_uc001dgj.2_Missense_Mutation_p.S273F|CRYZ_uc001dgl.2_Missense_Mutation_p.S239F|CRYZ_uc001dgm.2_Missense_Mutation_p.S136F	NM_001130042	NP_001123514	Q08257	QOR_HUMAN	crystallin, zeta isoform a	273					protein homotetramerization|visual perception|xenobiotic catabolic process	cytosol|Golgi apparatus	mRNA 3'-UTR binding|NADPH binding|NADPH:quinone reductase activity|zinc ion binding				0					Dicumarol(DB00266)	CTTGGTTGAGGAAAAGAGAGT	0.383000													71	99					0	0	0.000147903	0	0
HRNR	388697	broad.mit.edu	37	1	152192762	152192762	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:152192762C>T	uc001ezt.1	-	3	1419	c.1343G>A	c.(1342-1344)CGA>CAA	p.R448Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	448	4.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTGGAAGATCGACCAAAGCC	0.582000													23	42					0	0	0.00047179	0	0
CRNN	49860	broad.mit.edu	37	1	152382958	152382958	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:152382958C>T	uc001ezx.2	-	3	674	c.600G>A	c.(598-600)AGG>AGA	p.R200R		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	200	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCTGATTCCTCTTGCCTT	0.542000													77	126					0	0	0.000147903	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576831	158576831	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:158576831C>T	uc010pio.1	+	1	603	c.603C>T	c.(601-603)ATC>ATT	p.I201I		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					GGATCTTTATCCTCAGTCTTT	0.522000													43	67					0	0	0.000147903	0	0
MNDA	4332	broad.mit.edu	37	1	158813902	158813902	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:158813902C>T	uc001fsz.1	+	4	760	c.560C>T	c.(559-561)TCG>TTG	p.S187L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	187					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TCCAACACTTCGTTTACTCCG	0.493000													35	53					0	0	0.000159656	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011861	160011861	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:160011861G>A	uc001fuw.1	-	2	612	c.462C>T	c.(460-462)ACC>ACT	p.T154T		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	154	Helical; Name=M2; (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCAGGATGGTGGTGAGCACCA	0.537000													41	43					0	0	0.000589545	0	0
SLAMF1	6504	broad.mit.edu	37	1	160604424	160604425	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:160604424_160604425CG>AT	uc001fwl.3	-	3	1024_1025	c.678_679CG>AT	c.(676-681)CCCGGA>CCATGA	p.G227*	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	227	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GTCCTGCATCCGGGCCACGGGC	0.579000													5	66					0	0	6.4e-05	0	0
ASPM	259266	broad.mit.edu	37	1	197097757	197097757	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:197097757G>A	uc001gtu.2	-	10	3056	c.2799C>T	c.(2797-2799)TTC>TTT	p.F933F	ASPM_uc001gtv.2_Silent_p.F933F|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	933	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CACCACTTAGGAAATCTCGTG	0.333000													14	18					0	0	0.000422831	0	0
USH2A	7399	broad.mit.edu	37	1	215914870	215914870	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:215914870C>T	uc001hku.1	-	60	11945	c.11558G>A	c.(11557-11559)GGA>GAA	p.G3853E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3853	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACTGCTAACTCCACAACTTCC	0.358000										HNSCC(13;0.011)			34	68					0	0	0.00058488	0	0
EPRS	2058	broad.mit.edu	37	1	220153506	220153506	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:220153506G>A	uc001hly.1	-	26	3902	c.3632C>T	c.(3631-3633)ACG>ATG	p.T1211M		NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1211	Prolyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TTCCTTTTCCGTCTTTCTTCC	0.373000													56	72					0	0	0.000147903	0	0
LEFTY1	10637	broad.mit.edu	37	1	226074761	226074761	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:226074761G>A	uc001hpo.2	-	4	837	c.767C>T	c.(766-768)CCA>CTA	p.P256L	LEFTY1_uc010pvj.1_3'UTR	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	256					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CTCGGTCATTGGTGCTTCAGG	0.647000													9	8					0	0	0.000274275	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232629308	232629309	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:232629308_232629309GG>TT	uc001hvg.2	-	2	1739_1740	c.1581_1582CC>AA	c.(1579-1584)TCCCAG>TCAAAG	p.Q528K		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	528					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TAGTTGAACTGGGATCCTTCTT	0.470000													10	304					0	0	6.4e-05	0	0
FMN2	56776	broad.mit.edu	37	1	240371717	240371717	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:240371717C>T	uc010pyd.1	+	5	3830	c.3605C>T	c.(3604-3606)CCT>CTT	p.P1202L	FMN2_uc010pye.1_Missense_Mutation_p.P1206L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1202	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCCTCTACCTGGTGCTGGG	0.672000													3	3					0	0	0.00024832	0	0
OR2W3	343171	broad.mit.edu	37	1	248059074	248059074	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:248059074C>T	uc001idp.1	+	3	455	c.186C>T	c.(184-186)TTC>TTT	p.F62F	OR2W3_uc010pzb.1_Silent_p.F62F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGTACTTCTTCCTCGCCCACC	0.572000													36	61					0	0	0.000191422	0	0
OR2L2	26246	broad.mit.edu	37	1	248202216	248202216	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:248202216C>T	uc001idw.2	+	1	743	c.647C>T	c.(646-648)TCC>TTC	p.S216F	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATTGCATGTTCCTATGGCCGG	0.507000													44	85					0	0	0.000589545	0	0
OR2M2	391194	broad.mit.edu	37	1	248343804	248343804	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr1:248343804G>A	uc010pzf.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGGTCTCGGGAAATAGCCCA	0.418000													69	140					0	0	0.000147903	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687789	27687789	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr10:27687789C>T	uc001itu.2	-	4	1856	c.1738G>A	c.(1738-1740)GAT>AAT	p.D580N		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	580					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGATGGATATCAGTTCCATGT	0.383000													20	7					0	0	0.000229342	0	0
CYP17A1	1586	broad.mit.edu	37	10	104594763	104594763	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr10:104594763C>T	uc001kwg.2	-	3	617	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	149					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GTACTGATTTCCTGACAAACT	0.517000											OREG0020487	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	17					0	0	0.000566183	0	0
OR51A7	119687	broad.mit.edu	37	11	4929452	4929452	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:4929452C>T	uc010qyq.1	+	1	853	c.853C>T	c.(853-855)CTT>TTT	p.L285F		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTGCCGCCCCTTATGAACCC	0.453000													42	70					0	0	0.000270559	0	0
OR51B5	282763	broad.mit.edu	37	11	5364611	5364611	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:5364611C>T	uc001map.1	-	1	144	c.144G>A	c.(142-144)AAG>AAA	p.K48K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Silent_p.K48K	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGATCTTCCTTAATGAGAA	0.498000													27	38					0	0	0.000227799	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444060	5444060	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:5444060C>T	uc010qzd.1	+	1	630	c.630C>T	c.(628-630)ATC>ATT	p.I210I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCATTATTATCGTGGATCCTC	0.502000													46	70					0	0	0.000147903	0	0
ZNF215	7762	broad.mit.edu	37	11	6964429	6964429	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:6964429T>C	uc001mey.2	+	5	1187	c.599T>C	c.(598-600)CTG>CCG	p.L200P	ZNF215_uc010raw.1_Intron|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Missense_Mutation_p.L200P	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	200	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TTTAGGAACCTGAATTCATTG	0.413000													3	85					0	0	1.23904e-05	0	0
OR4C15	81309	broad.mit.edu	37	11	55321940	55321940	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:55321940G>A	uc010rig.1	+	1	158	c.158G>A	c.(157-159)GGA>GAA	p.G53E		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTTCCTTGGGAAACATGCAA	0.358000										HNSCC(20;0.049)			54	83					0	0	0.000147903	0	0
RASGRP2	10235	broad.mit.edu	37	11	64507588	64507588	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:64507588C>T	uc009ypu.2	-	6	646	c.419G>A	c.(418-420)GGA>GAA	p.G140E	RASGRP2_uc001oat.2_Missense_Mutation_p.G42E|RASGRP2_uc001oau.2_5'UTR|RASGRP2_uc009ypv.2_Missense_Mutation_p.G140E|RASGRP2_uc009ypw.2_Missense_Mutation_p.G140E	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	140					platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CTTTTTCTGTCCCACAGGGTT	0.587000													21	45					0	0	0.000229342	0	0
FAT3	120114	broad.mit.edu	37	11	92523143	92523143	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:92523143G>A	uc001pdj.3	+	7	4387	c.4370G>A	c.(4369-4371)GGC>GAC	p.G1457D		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1457	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AATGATAATGGCCCAGAATTC	0.398000										TCGA Ovarian(4;0.039)			123	196					0	0	0.000147903	0	0
C2CD2L	9854	broad.mit.edu	37	11	118984576	118984576	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:118984576C>T	uc001pvo.2	+	12	1860	c.1501C>T	c.(1501-1503)CTT>TTT	p.L501F	C2CD2L_uc001pvn.2_Missense_Mutation_p.L502F	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	501						integral to membrane					0						GGACAGCCACCTTTCCAACGG	0.562000													10	19					0	0	3.86212e-05	0	0
OR8B2	26595	broad.mit.edu	37	11	124253109	124253109	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr11:124253109C>T	uc010sai.1	-	1	131	c.131G>A	c.(130-132)GGC>GAC	p.G44D	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGTGATCAAGCCAAGGTTGCC	0.418000													45	57					0	0	0.000147903	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376714	8376714	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:8376714C>A	uc001qui.2	-	5	780	c.221G>T	c.(220-222)GGG>GTG	p.G74V	FAM90A1_uc001quh.2_Missense_Mutation_p.G74V	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	74							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TTCCTTTTCCCCAAAGTTCGG	0.547000													32	45					9.65021e-13	1.70211e-11	0.000339439	1	0
LRP6	4040	broad.mit.edu	37	12	12302058	12302059	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:12302058_12302059CG>AT	uc001rah.3	-	14	3165_3166	c.3023_3024CG>AT	c.(3022-3024)CCG>CAT	p.P1008H	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.P1008H	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1008	LDL-receptor class B 16.|Extracellular (Potential).|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GGTTCTGACTCGGAACTGAGCT	0.431000													9	313					0	0	6.4e-05	0	0
GSG1	83445	broad.mit.edu	37	12	13243561	13243561	+	Silent	SNP	T	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:13243561T>C	uc001rbn.2	-	2	413	c.240A>G	c.(238-240)GGA>GGG	p.G80G	GSG1_uc001rbj.2_Silent_p.G67G|GSG1_uc001rbk.2_Silent_p.G67G|GSG1_uc001rbl.2_Silent_p.G67G|GSG1_uc001rbm.2_Silent_p.G67G|GSG1_uc001rbo.2_Silent_p.G80G|GSG1_uc001rbp.2_Silent_p.G80G|GSG1_uc001rbq.1_Silent_p.G80G	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	67						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		TGTTGGTATCTCCATCCAGGG	0.562000													3	90					0	0	0.00024832	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715834	13715834	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:13715834G>A	uc001rbt.2	-	13	4517	c.4338C>T	c.(4336-4338)ATC>ATT	p.I1446I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1446	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCCCTATACAGATGTCCTTCT	0.562000													27	18					0	0	0.000117367	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716597	13716597	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:13716597C>T	uc001rbt.2	-	13	3754	c.3575G>A	c.(3574-3576)GGG>GAG	p.G1192E		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1192	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCAGGTACCCCGCTGACCAC	0.617000													29	36					0	0	0.000491102	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18800921	18800921	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:18800921G>A	uc001rdt.2	+	32	4413	c.4297G>A	c.(4297-4299)GAT>AAT	p.D1433N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D1474N|PIK3C2G_uc010sic.1_Missense_Mutation_p.D1252N	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1433					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TGTCCCACTCGATAAAGAAAA	0.358000													14	18					0	0	0.000219431	0	0
Unknown	0	broad.mit.edu	37	12	31353379	31353379	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:31353379G>A	uc010sjy.1	-	3	351	c.351C>T	c.(349-351)CCC>CCT	p.P117P						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		GCTTGTAGGTGGGTTTATCAG	0.413000													13	10					0	0	0.000566183	0	0
DDX23	9416	broad.mit.edu	37	12	49239434	49239434	+	Silent	SNP	T	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:49239434T>C	uc001rsm.2	-	2	223	c.132A>G	c.(130-132)AGA>AGG	p.R44R		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	44	Arg-rich.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						GATGCCGCTTTCTATCTTTAG	0.507000													3	105					0	0	6.4e-05	0	0
FMNL3	91010	broad.mit.edu	37	12	50050213	50050213	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:50050213G>A	uc001ruv.1	-	9	1093	c.859C>T	c.(859-861)CTT>TTT	p.L287F	FMNL3_uc001ruw.1_Missense_Mutation_p.L236F|FMNL3_uc001ruu.1_Missense_Mutation_p.L137F	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	287	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						AAGGCAGCAAGGATGATTTCG	0.507000													13	19					0	0	0.000219431	0	0
KRT78	196374	broad.mit.edu	37	12	53233687	53233687	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:53233687C>T	uc001sbc.1	-	7	1193	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	377	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GCCTCCAGCTCGTCCACCTTG	0.627000													10	9					0	0	0.000442599	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57873182	57873182	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:57873182G>A	uc001sod.2	-	5	414	c.221C>T	c.(220-222)TCC>TTC	p.S74F	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Missense_Mutation_p.S3F|ARHGAP9_uc001soc.2_Missense_Mutation_p.S3F|ARHGAP9_uc001soe.1_Missense_Mutation_p.S82F|ARHGAP9_uc010sro.1_Missense_Mutation_p.S3F	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	3					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			CCACCGGCTGGATAGCATTGT	0.572000													12	16					0	0	0.00010058	0	0
STAB2	55576	broad.mit.edu	37	12	104078786	104078786	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:104078786C>T	uc001tjw.2	+	27	3107	c.2921C>T	c.(2920-2922)TCG>TTG	p.S974L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	974	Extracellular (Potential).|EGF-like 10.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CAATCTACTTCGTCTGGTGTC	0.453000													71	106					0	0	0.000147903	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834771	125834771	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:125834771G>A	uc001uhe.1	+	2	834	c.826G>A	c.(826-828)GTG>ATG	p.V276M		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	276	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTGGTCCCTGGTGAGCTTGGA	0.582000													59	93					0	0	0.000147903	0	0
MIPEP	4285	broad.mit.edu	37	13	24433031	24433031	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr13:24433031G>A	uc001uox.3	-	10	1174	c.1074C>T	c.(1072-1074)CCC>CCT	p.P358P		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	358					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		TGTAGTAAGGGGGGTCCCAGG	0.403000													17	17					0	0	9.7654e-05	0	0
DGKH	160851	broad.mit.edu	37	13	42763258	42763258	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr13:42763258C>T	uc001uyl.1	+	15	1746	c.1725C>T	c.(1723-1725)AGC>AGT	p.S575S	DGKH_uc010tfh.1_Silent_p.S575S|DGKH_uc001uym.1_Silent_p.S575S|DGKH_uc010tfi.1_Silent_p.S330S|DGKH_uc010tfj.1_Silent_p.S430S|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Silent_p.S430S|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	575					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		CTGGCCTCAGCCCTCTCATTG	0.522000													23	40					0	0	0.000295444	0	0
AKAP11	11215	broad.mit.edu	37	13	42876210	42876211	+	Missense_Mutation	DNP	CG	AT	AT	rs139388454	byFrequency	TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr13:42876210_42876211CG>AT	uc001uys.1	+	8	3503_3504	c.3328_3329CG>AT	c.(3328-3330)CGG>ATG	p.R1110M		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1110					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		AGTACCATCCCGGGCTAGTTCT	0.426000													5	66					0	0	6.4e-05	0	0
NDRG2	57447	broad.mit.edu	37	14	21486621	21486621	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr14:21486621G>A	uc001vyy.2	-	14	1006	c.856C>T	c.(856-858)CTC>TTC	p.L286F	NDRG2_uc010tll.1_Missense_Mutation_p.L282F|NDRG2_uc001vyt.2_Missense_Mutation_p.L199F|NDRG2_uc001vyu.2_Missense_Mutation_p.L243F|NDRG2_uc001vyv.2_Missense_Mutation_p.L272F|NDRG2_uc001vyw.2_Missense_Mutation_p.L272F|NDRG2_uc001vzb.2_Missense_Mutation_p.L226F|NDRG2_uc001vyx.2_Missense_Mutation_p.L286F|NDRG2_uc001vza.2_Missense_Mutation_p.L272F|NDRG2_uc001vyz.2_Missense_Mutation_p.L272F|NDRG2_uc001vzc.2_Intron|NDRG2_uc001vze.2_Missense_Mutation_p.L286F|NDRG2_uc001vzd.2_Missense_Mutation_p.L286F|NDRG2_uc001vzg.2_Missense_Mutation_p.L272F|NDRG2_uc001vzf.2_Missense_Mutation_p.L272F|NDRG2_uc010aig.2_Missense_Mutation_p.L275F	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	286					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CTGACCTTGAGGAACGAGGTC	0.582000													9	13					0	0	0.000274275	0	0
NIN	51199	broad.mit.edu	37	14	51224286	51224286	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr14:51224286G>A	uc001wym.2	-	18	3653	c.3462C>T	c.(3460-3462)GAC>GAT	p.D1154D	NIN_uc001wyi.2_Silent_p.D1154D|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Silent_p.D1160D|NIN_uc001wyo.2_Silent_p.D1154D	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1154					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TACTTCCCAGGTCCCGGACCT	0.478000			T	PDGFRB	MPD								20	55					0	0	0.000229342	0	0
SNORD113-9	767569	broad.mit.edu	37	14	101412024	101412024	+	RNA	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr14:101412024G>A	uc001yiq.2	+	1		c.39G>A				NR_003237				Homo sapiens small nucleolar RNA, C/D box 113-9 (SNORD113-9), non-coding RNA.												0						CTGAATCTTGGATTTTGATTA	0.348000													69	48					0	0	0.000147903	0	0
UBR1	197131	broad.mit.edu	37	15	43340622	43340622	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:43340622G>A	uc001zqq.2	-	13	1573	c.1507C>T	c.(1507-1509)CGA>TGA	p.R503*	UBR1_uc010udk.1_Nonsense_Mutation_p.R503*	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	503					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		AAAAAAGATCGAAAACCTTCA	0.303000													21	29					0	0	0.000295444	0	0
FBN1	2200	broad.mit.edu	37	15	48719891	48719891	+	Silent	SNP	G	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:48719891G>T	uc001zwx.1	-	58	7405	c.7077C>A	c.(7075-7077)ACC>ACA	p.T2359T	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2359	TB 9.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		ATTCCGATTTGGTGACGGGGT	0.547000													18	25					9.86323e-18	1.75641e-16	0.000586117	1	0
FBN1	2200	broad.mit.edu	37	15	48719895	48719895	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:48719895A>C	uc001zwx.1	-	58	7401	c.7073T>G	c.(7072-7074)GTC>GGC	p.V2358G	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2358	TB 9.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CGATTTGGTGACGGGGTTCCT	0.542000													21	26					0	0	0.000117367	0	0
WDR72	256764	broad.mit.edu	37	15	53889401	53889401	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:53889401G>A	uc002acj.2	-	18	3065	c.3023C>T	c.(3022-3024)CCC>CTC	p.P1008L		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1008										lung(1)|skin(1)	2				all cancers(107;0.0511)		ACTATTGACGGGTATCTTTCC	0.408000													57	97					0	0	0.000147903	0	0
UNC13C	440279	broad.mit.edu	37	15	54305180	54305180	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:54305180G>A	uc002ack.2	+	1	80	c.80G>A	c.(79-81)GGA>GAA	p.G27E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	27					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAGAAATTGGGAAATACAAAC	0.368000													32	46					0	0	0.000109025	0	0
MYO9A	4649	broad.mit.edu	37	15	72191230	72191230	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:72191230G>A	uc002atl.3	-	25	4087	c.3614C>T	c.(3613-3615)GCC>GTC	p.A1205V	MYO9A_uc010biq.2_Missense_Mutation_p.A825V|MYO9A_uc002atn.1_Missense_Mutation_p.A1186V|MYO9A_uc002atk.2_5'UTR|MYO9A_uc002atm.1_5'UTR	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1205	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTCCTCTATGGCTTTTATTCT	0.423000													63	88					0	0	0.000147903	0	0
ISLR2	57611	broad.mit.edu	37	15	74425238	74425238	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:74425238G>A	uc002axd.2	+	4	912	c.143G>A	c.(142-144)GGA>GAA	p.G48E	ISLR2_uc002axe.2_Missense_Mutation_p.G48E|ISLR2_uc010bjg.2_Missense_Mutation_p.G48E|ISLR2_uc010bjf.2_Missense_Mutation_p.G48E	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	48	Extracellular (Potential).|LRRNT.				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GTGCCGGAAGGACTGCCTGCC	0.642000													12	29					0	0	0.000151284	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84553961	84553961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:84553961G>A	uc002bjz.3	+	10	1293	c.1069G>A	c.(1069-1071)GGA>AGA	p.G357R	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G357R|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G357R	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	357						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GACGTGTGGAGGAGGTGAGGC	0.428000													11	21					0	0	0.000151284	0	0
AP3S2	10239	broad.mit.edu	37	15	90378847	90378847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:90378847G>A	uc002boq.3	-	6	918	c.482C>T	c.(481-483)GCT>GTT	p.A161V	AP3S2_uc002bos.3_Missense_Mutation_p.A362V|AP3S2_uc010bns.2_RNA|AP3S2_uc002bor.3_RNA|AP3S2_uc010bnt.2_RNA	NM_005829	NP_005820	P59780	AP3S2_HUMAN	adaptor-related protein complex 3, sigma 2	161					intracellular protein transport|vesicle-mediated transport	cytoplasmic vesicle membrane|Golgi apparatus|membrane coat	protein transporter activity				0	Lung NSC(78;0.0181)|all_lung(78;0.0384)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.223)			AGCAGACACAGCCCGCGCAGG	0.448000													29	62					0	0	0.000227799	0	0
MAN2A2	4122	broad.mit.edu	37	15	91462873	91462874	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr15:91462873_91462874GG>TT	uc010bnz.2	+	23	3424_3425	c.3309_3310GG>TT	c.(3307-3312)CTGGGC>CTTTGC	p.G1104C	MAN2A2_uc002bqc.2_Missense_Mutation_p.G1104C|MAN2A2_uc010uql.1_Missense_Mutation_p.G766C|MAN2A2_uc010uqm.1_Missense_Mutation_p.G683C|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1104					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			AGGTAGCCCTGGGCAGCCTTTT	0.520000													9	326					0	0	6.4e-05	0	0
ACSM2B	348158	broad.mit.edu	37	16	20566767	20566767	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:20566767C>T	uc002dhj.3	-	5	630	c.420G>A	c.(418-420)ATG>ATA	p.M140I	ACSM2B_uc002dhk.3_Missense_Mutation_p.M140I|ACSM2B_uc010bwf.1_Missense_Mutation_p.M140I	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	140					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CAGTGGATTTCATCTGGATGG	0.428000													26	50					0	0	0.000339439	0	0
ITGAL	3683	broad.mit.edu	37	16	30510810	30510810	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:30510810G>A	uc002dyi.3	+	17	2321	c.2145G>A	c.(2143-2145)CCG>CCA	p.P715P	ITGAL_uc002dyj.3_Silent_p.P632P|ITGAL_uc010vev.1_Silent_p.P111P	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	715	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TTCATTTCCCGGTAAGGGAGC	0.318000													22	36					0	0	0.000229342	0	0
PRR14	78994	broad.mit.edu	37	16	30666248	30666249	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:30666248_30666249CC>TT	uc002dyy.2	+	8	1215_1216	c.957_958CC>TT	c.(955-960)ACCCCA>ACTTCA	p.P320S	PRR14_uc002dyz.2_Missense_Mutation_p.P165S|PRR14_uc002dza.2_Missense_Mutation_p.P320S|PRR14_uc002dzb.1_Missense_Mutation_p.P134S	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	proline rich 14	320	Pro-rich.										0			Colorectal(24;0.103)			ACCACAATACCCCAGCACTTCT	0.668000													9	23					0	0	6.4e-05	0	0
SALL1	6299	broad.mit.edu	37	16	51174059	51174059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:51174059G>A	uc010vgs.1	-	2	2105	c.2074C>T	c.(2074-2076)CAG>TAG	p.Q692*	SALL1_uc010vgr.1_Nonsense_Mutation_p.Q595*|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	692					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACCAGTTGCTGAAGCTTGGAC	0.532000													46	71					0	0	0.000147903	0	0
AARS	16	broad.mit.edu	37	16	70311047	70311047	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:70311047A>G	uc002eyn.1	-	3	265	c.155T>C	c.(154-156)ATT>ACT	p.I52T		NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	52					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	GTTCAGGAAAATGGGTTTAAA	0.373000													37	42					0	0	0.000125731	0	0
HYDIN	54768	broad.mit.edu	37	16	70843823	70843823	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:70843823G>A	uc002ezr.2	-	85	14871	c.14743C>T	c.(14743-14745)CAA>TAA	p.Q4915*	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4916										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGCTCATATTGGTAGTAACCC	0.468000													151	282					0	0	0.000147903	0	0
ZNRF1	84937	broad.mit.edu	37	16	75140409	75140409	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:75140409G>T	uc002fdk.2	+	4	1311	c.656G>T	c.(655-657)AGA>ATA	p.R219I	ZNRF1_uc002fdl.1_Missense_Mutation_p.R219I|ZNRF1_uc010cgr.1_Missense_Mutation_p.R270I	NM_032268	NP_115644	Q8ND25	ZNRF1_HUMAN	zinc and ring finger protein 1	219	RING-type; atypical.					cell junction|endosome|lysosome|synaptic vesicle membrane	ligase activity|protein binding|zinc ion binding				0						GAAGTGAACAGATCTTGTCCG	0.602000													16	27					1.33834e-09	2.34938e-08	9.7654e-05	1	0
CDYL2	124359	broad.mit.edu	37	16	80718728	80718728	+	Missense_Mutation	SNP	C	T	T	rs151165278	byFrequency	TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:80718728C>T	uc002ffs.2	-	2	428	c.323G>A	c.(322-324)CGA>CAA	p.R108Q		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	108						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						AGGGTTAATTCGCTTCCGTTT	0.562000													23	18					0	0	0.000375601	0	0
KLHL36	79786	broad.mit.edu	37	16	84695527	84695527	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr16:84695527C>T	uc002fig.2	+	5	1780	c.1639C>T	c.(1639-1641)CGC>TGC	p.R547C	KLHL36_uc010chl.2_Missense_Mutation_p.R483C|uc002fih.2_5'Flank	NM_024731	NP_079007	Q8N4N3	KLH36_HUMAN	kelch-like 36	547	Kelch 6.									skin(2)	2						GTGGGAGGGCCGCATCTACAT	0.682000													5	6					0	0	1.23904e-05	0	0
DNAH2	146754	broad.mit.edu	37	17	7679380	7679380	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:7679380C>T	uc002giu.1	+	30	4874	c.4860C>T	c.(4858-4860)ACC>ACT	p.T1620T		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1620	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGAGGGTGACCCTGCGGGACC	0.632000													21	26					0	0	0.000295444	0	0
MYH1	4619	broad.mit.edu	37	17	10408747	10408747	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:10408747G>A	uc002gmo.2	-	20	2350	c.2256C>T	c.(2254-2256)TCC>TCT	p.S752S	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	752	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CAATGTCAATGGACCCCAGGA	0.403000													31	41					0	0	0.000279167	0	0
HSD17B1	3292	broad.mit.edu	37	17	40705284	40705284	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:40705284G>A	uc002hzw.2	+	2	1208	c.240G>A	c.(238-240)GTG>GTA	p.V80V	HSD17B1_uc002hzx.2_Silent_p.V80V|HSD17B1_uc010wgm.1_RNA|uc002hzy.2_Silent_p.V99V|HSD17B1_uc010cyi.2_Silent_p.V111V	NM_000413	NP_000404	P14061	DHB1_HUMAN	hydroxysteroid (17-beta) dehydrogenase 1	80					estrogen biosynthetic process	cytosol	binding|estradiol 17-beta-dehydrogenase activity				0		all_cancers(22;5.59e-08)|all_epithelial(22;7e-07)|Ovarian(249;0.0261)		BRCA - Breast invasive adenocarcinoma(366;0.129)	NADH(DB00157)	GGGAACGCGTGACTGAGGGCC	0.667000													13	23					0	0	0.000566183	0	0
ABCC3	8714	broad.mit.edu	37	17	48734526	48734526	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:48734526C>T	uc002isl.2	+	4	548	c.468C>T	c.(466-468)ATC>ATT	p.I156I	ABCC3_uc002isk.3_Silent_p.I156I	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	156	Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GCTCCAAGATCCTTTTAGCCA	0.567000													31	44					0	0	0.00058488	0	0
KCNH6	81033	broad.mit.edu	37	17	61611442	61611442	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:61611442G>T	uc002jay.2	+	5	951	c.871G>T	c.(871-873)GGG>TGG	p.G291W	KCNH6_uc002jax.1_Missense_Mutation_p.G291W|KCNH6_uc010wpl.1_Missense_Mutation_p.G168W|KCNH6_uc010wpm.1_Missense_Mutation_p.G291W|KCNH6_uc002jaz.1_Missense_Mutation_p.G291W	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	291	Extracellular (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ATCACGGCGTGGGGCCTGCAG	0.582000													5	45					3.07112e-06	5.36576e-05	6.40141e-05	1	0
NOL11	25926	broad.mit.edu	37	17	65735061	65735061	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:65735061C>T	uc002jgd.1	+	15	1780	c.1777C>T	c.(1777-1779)CAT>TAT	p.H593Y	NOL11_uc010wql.1_Missense_Mutation_p.H411Y|NOL11_uc010deu.1_Missense_Mutation_p.H188Y|SNORA38B_uc010dev.2_5'Flank	NM_015462	NP_056277	Q9H8H0	NOL11_HUMAN	nucleolar protein 11	593						nucleolus					0	all_cancers(12;1.54e-10)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0518)|COAD - Colon adenocarcinoma(4;0.0977)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGCAATTCTTCATTCAGCATA	0.338000													38	70					0	0	0.000437636	0	0
ABCA9	10350	broad.mit.edu	37	17	66981056	66981056	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:66981056C>T	uc002jhu.2	-	34	4492	c.4349G>A	c.(4348-4350)GGG>GAG	p.G1450E	ABCA9_uc010dez.2_Missense_Mutation_p.G1412E	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1450	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GGGGTCCATCCCGGTCGACGG	0.557000													11	22					0	0	0.000219431	0	0
EVPL	2125	broad.mit.edu	37	17	74015056	74015056	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:74015056C>T	uc002jqi.2	-	11	1451	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	EVPL_uc010wss.1_Missense_Mutation_p.R408Q|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	408	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGGTTTCTTCGCTGTGGCAG	0.682000													11	16					0	0	0.000219431	0	0
LRRC45	201255	broad.mit.edu	37	17	79987021	79987021	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr17:79987021G>C	uc002kde.2	+	13	1601	c.1361G>C	c.(1360-1362)CGG>CCG	p.R454P	RAC3_uc002kdf.2_5'Flank	NM_144999	NP_659436	Q96CN5	LRC45_HUMAN	leucine rich repeat containing 45	454	Potential.					centrosome				pancreas(1)	1	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			ATGCAGGAGCGGGTGCAGAGG	0.672000													3	46					0	0	1.23904e-05	0	0
DSC3	1825	broad.mit.edu	37	18	28604330	28604330	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr18:28604330C>T	uc002kwj.3	-	6	915	c.760G>A	c.(760-762)GAA>AAA	p.E254K	DSC3_uc002kwi.3_Missense_Mutation_p.E254K	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	254	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CTACTACTTTCCAAAACTTCA	0.348000													16	36					0	0	0.000132079	0	0
SMAD2	4087	broad.mit.edu	37	18	45423101	45423101	+	Silent	SNP	C	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr18:45423101C>A	uc002lcy.2	-	2	275	c.27G>T	c.(25-27)CCG>CCT	p.P9P	SMAD2_uc002lcz.2_Silent_p.P9P|SMAD2_uc010xdc.1_Silent_p.P9P|SMAD2_uc010xdd.1_Silent_p.P9P	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	9					anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						TCACAACTGGCGGCGTGAATG	0.517000													13	13					5.50884e-06	9.57969e-05	0.00010058	1	0
ATP8B3	148229	broad.mit.edu	37	19	1789630	1789630	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:1789630C>T	uc002ltw.2	-	23	2809	c.2575G>A	c.(2575-2577)GAT>AAT	p.D859N	ATP8B3_uc002ltv.2_Missense_Mutation_p.D822N|ATP8B3_uc002ltx.2_Intron	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	859	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TAGAGGAAATCCCTCCTGGAC	0.692000													5	4					0	0	1.23904e-05	0	0
ZFR2	23217	broad.mit.edu	37	19	3834900	3834900	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:3834900C>T	uc002lyw.2	-	2	147	c.135G>A	c.(133-135)GTG>GTA	p.V45V	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	45						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		AGGCCGGGTTCACGGCAGGGT	0.677000													4	6					0	0	0.00024832	0	0
EEF2	1938	broad.mit.edu	37	19	3982420	3982420	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:3982420G>A	uc002lze.2	-	5	698	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	205						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		GGACAGGATCGATCTGGAAGT	0.632000													18	26					0	0	9.7654e-05	0	0
ACSBG2	81616	broad.mit.edu	37	19	6185474	6185474	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:6185474G>A	uc002mef.1	+	11	1577	c.1350G>A	c.(1348-1350)AAG>AAA	p.K450K	ACSBG2_uc002mee.1_Silent_p.K263K|ACSBG2_uc002meg.1_Silent_p.K450K|ACSBG2_uc002meh.1_Silent_p.K450K|ACSBG2_uc002mei.1_Silent_p.K400K|ACSBG2_uc010xiz.1_Silent_p.K450K	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	450					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CTGGGTGTAAGAATATGCTGT	0.517000													78	112					0	0	0.000147903	0	0
MUC16	94025	broad.mit.edu	37	19	9049481	9049482	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:9049481_9049482CC>AA	uc002mkp.2	-	5	32353_32354	c.32149_32150GG>TT	c.(32149-32151)GGG>TTG	p.G10717L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10719	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTTCTGCCCCAGGACTGGTG	0.475000													9	221					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9089934	9089934	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:9089934G>A	uc002mkp.2	-	1	2085	c.1881C>T	c.(1879-1881)CTC>CTT	p.L627L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	627	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCTCTGGTGAGTAGGTGGG	0.587000													24	31					0	0	0.000586117	0	0
CCDC105	126402	broad.mit.edu	37	19	15132664	15132664	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:15132664G>A	uc002nae.2	+	6	1283	c.1184G>A	c.(1183-1185)AGA>AAA	p.R395K		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	395					microtubule cytoskeleton organization	microtubule				ovary(1)	1						AAGCTGGACAGACCCCTGGTT	0.642000													14	13					0	0	0.000566183	0	0
LSR	51599	broad.mit.edu	37	19	35741388	35741388	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:35741388C>T	uc002nyl.2	+	2	647	c.424C>T	c.(424-426)CCG>TCG	p.P142S	LSR_uc002nym.2_Missense_Mutation_p.P142S|LSR_uc002nyn.2_Missense_Mutation_p.P142S|LSR_uc002nyo.2_Missense_Mutation_p.P142S|LSR_uc010xsr.1_Missense_Mutation_p.P142S|LSR_uc002nyp.2_Missense_Mutation_p.P105S	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	142	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TGCCTTCTCCCCGGCCAGCGT	0.632000													17	33					0	0	7.07596e-05	0	0
RYR1	6261	broad.mit.edu	37	19	38985160	38985160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:38985160C>T	uc002oit.2	+	39	6573	c.6443C>T	c.(6442-6444)TCC>TTC	p.S2148F	RYR1_uc002oiu.2_Missense_Mutation_p.S2148F|RYR1_uc002oiv.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2148	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCACCGTCCTCCGTGGAAGAC	0.662000													15	16					0	0	0.000219431	0	0
IL28A	282616	broad.mit.edu	37	19	39760175	39760175	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:39760175G>A	uc002oku.1	+	4	370	c.318G>A	c.(316-318)CTG>CTA	p.L106L		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	106					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCCTGACGCTGAAGGTTCTGG	0.488000													15	24					0	0	0.000566183	0	0
LYPD4	147719	broad.mit.edu	37	19	42342212	42342212	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:42342212G>A	uc002orp.1	-	4	1319	c.335C>T	c.(334-336)TCT>TTT	p.S112F	LYPD4_uc002orq.1_Missense_Mutation_p.S77F	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	112						anchored to membrane|plasma membrane				ovary(1)	1						GCAGAGATAAGACCGGCAGAC	0.527000													19	36					0	0	0.000295444	0	0
PSG3	5671	broad.mit.edu	37	19	43237057	43237057	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:43237057G>A	uc002oue.2	-	3	720	c.588C>T	c.(586-588)TCC>TCT	p.S196S	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.S218S	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	196	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTTTGTTTTTGGACAACTGCA	0.507000													84	131					0	0	0.000147903	0	0
PSG2	5670	broad.mit.edu	37	19	43576013	43576013	+	Missense_Mutation	SNP	G	A	A	rs149747966		TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:43576013G>A	uc002ovr.2	-	4	896	c.803C>T	c.(802-804)CCG>CTG	p.P268L	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.P268L|PSG2_uc010eiq.1_Missense_Mutation_p.P268L|PSG2_uc002ovs.3_Missense_Mutation_p.P268L|PSG2_uc002ovt.3_Missense_Mutation_p.P268L	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	268	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				ATACTGTGCCGGTGGGTTAGA	0.458000													54	19					0	0	0.000147903	0	0
MAMSTR	284358	broad.mit.edu	37	19	49217244	49217244	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:49217244C>T	uc002pkg.2	-	8	844	c.782G>A	c.(781-783)GGG>GAG	p.G261E	MAMSTR_uc002pkf.2_Missense_Mutation_p.G158E	NM_001130915	NP_001124387	Q6ZN01	MASTR_HUMAN	MEF2 activating motif and SAP domain containing	261	Pro-rich.|Transcription activation (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			ovary(1)	1						cggagccgTCCCCGGGGTATC	0.408000													7	10					0	0	8.12818e-05	0	0
ZNF331	55422	broad.mit.edu	37	19	54080114	54080114	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:54080114C>T	uc002qbx.1	+	7	1734	c.300C>T	c.(298-300)GTC>GTT	p.V100V	ZNF331_uc002qby.1_Silent_p.V100V|ZNF331_uc002qbz.1_Silent_p.V100V|ZNF331_uc002qca.1_Silent_p.V100V|ZNF331_uc010eqr.1_Silent_p.V100V|ZNF331_uc002qcb.1_Silent_p.V100V|ZNF331_uc002qcc.1_Silent_p.V100V|ZNF331_uc002qcd.1_Silent_p.V100V	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GGAGGTATGTCAATCAGATGA	0.428000			T	?	follicular thyroid adenoma								39	61					0	0	0.000509022	0	0
NLRP7	199713	broad.mit.edu	37	19	55449588	55449588	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:55449588C>T	uc002qih.3	-	5	2029	c.1953G>A	c.(1951-1953)CCG>CCA	p.P651P	NLRP7_uc002qig.3_Intron|NLRP7_uc002qii.3_Silent_p.P651P|NLRP7_uc010esk.2_Silent_p.P651P|NLRP7_uc010esl.2_Silent_p.P679P	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	651			P -> S (in HYDM).				ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GAGCCCAGTTCGGAATGGTTA	0.453000													16	46					0	0	7.07596e-05	0	0
NLRP5	126206	broad.mit.edu	37	19	56539052	56539052	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:56539052G>A	uc002qmj.2	+	7	1453	c.1453G>A	c.(1453-1455)GAC>AAC	p.D485N	NLRP5_uc002qmi.2_Missense_Mutation_p.D466N	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	485	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GCAGCTGCAGGACGTGGTGGG	0.647000													7	27					0	0	8.12818e-05	0	0
PEG3	5178	broad.mit.edu	37	19	57328917	57328917	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:57328917G>A	uc002qnu.2	-	7	1244	c.893C>T	c.(892-894)TCA>TTA	p.S298L	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S269L|PEG3_uc002qnv.2_Missense_Mutation_p.S298L|PEG3_uc002qnw.2_Missense_Mutation_p.S174L|PEG3_uc002qnx.2_Missense_Mutation_p.S172L|PEG3_uc010etr.2_Missense_Mutation_p.S298L	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	298					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCGGTGGGTTGATTTTTTGGC	0.468000													40	61					0	0	0.000147903	0	0
ZNF304	57343	broad.mit.edu	37	19	57867735	57867735	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr19:57867735C>T	uc010ygw.1	+	3	886	c.498C>T	c.(496-498)TCC>TCT	p.S166S	ZNF304_uc010etw.2_Silent_p.S213S|ZNF304_uc010etx.2_Silent_p.S124S	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	zinc finger protein 304	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		TAGGGAGATCCTTTACGTGCA	0.498000													10	27					0	0	3.86212e-05	0	0
RASGRP3	25780	broad.mit.edu	37	2	33745024	33745024	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:33745024G>A	uc002rox.2	+	6	806	c.179G>A	c.(178-180)CGA>CAA	p.R60Q	RASGRP3_uc010ync.1_Missense_Mutation_p.R60Q|RASGRP3_uc002roy.2_Missense_Mutation_p.R60Q	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	60	N-terminal Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTTACGTATCGAAATGCCACT	0.368000													11	13					0	0	0.00010058	0	0
CCDC85A	114800	broad.mit.edu	37	2	56419668	56419668	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:56419668C>T	uc002rzn.2	+	2	835	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	111										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCTGCTGTTTCCTGGATGATG	0.527000													22	33					0	0	0.000375601	0	0
EXOC6B	23233	broad.mit.edu	37	2	72802710	72802710	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:72802710T>A	uc010fep.2	-	7	895	c.757A>T	c.(757-759)ATC>TTC	p.I253F	EXOC6B_uc002sij.2_Missense_Mutation_p.I253F	NM_015189	NP_056004	Q9Y2D4	EXC6B_HUMAN	SEC15-like 2	253					protein transport|vesicle docking involved in exocytosis	exocyst				central_nervous_system(2)	2						GTATCAAAGATTATATATGCA	0.398000													38	52					0	0	0.000159656	0	0
Unknown	0	broad.mit.edu	37	2	91679116	91679116	+	RNA	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:91679116C>T	uc010yua.1	+	1		c.30C>T								Homo sapiens clone CIC 03 anticardiolipin immunoglobulin light chain mRNA, partial cds.																		CTCCATCCTCCCTGTCTGCAT	0.438000													17	212					0	0	0.000319135	0	0
IL1F6	27179	broad.mit.edu	37	2	113763452	113763452	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:113763452G>A	uc010yxr.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	2					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CACCACAATGGAAAAAGGTAA	0.443000													15	28					0	0	7.07596e-05	0	0
TTN	7273	broad.mit.edu	37	2	179422801	179422801	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:179422801C>T	uc010zfg.1	-	277	79800	c.79576G>A	c.(79576-79578)GAA>AAA	p.E26526K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E20221K|TTN_uc010zfi.1_Missense_Mutation_p.E20154K|TTN_uc010zfj.1_Missense_Mutation_p.E20029K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27453							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGTAATTTCGGTATTAAAT	0.428000													31	88					0	0	0.000339439	0	0
TTN	7273	broad.mit.edu	37	2	179485585	179485585	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:179485585G>A	uc010zfg.1	-	196	38272	c.38048C>T	c.(38047-38049)TCA>TTA	p.S12683L	TTN_uc010zfh.1_Missense_Mutation_p.S6378L|TTN_uc010zfi.1_Missense_Mutation_p.S6311L|TTN_uc010zfj.1_Missense_Mutation_p.S6186L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13610							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGTATTTTGAACTATCAAA	0.393000													63	65					0	0	0.000147903	0	0
COL5A2	1290	broad.mit.edu	37	2	189957035	189957035	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:189957035C>T	uc002uqk.2	-	7	842	c.567_splice	c.e7+1	p.R189_splice		NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein						axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			ACACAACTCACCCTGCTCAAG	0.458000													8	4					0	0	0.000157383	0	0
DNAH7	56171	broad.mit.edu	37	2	196709789	196709789	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:196709789C>T	uc002utj.3	-	47	8983	c.8882G>A	c.(8881-8883)CGA>CAA	p.R2961Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2961	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTCCAAGTTCGAATTGTCAC	0.363000													19	27					0	0	0.000375601	0	0
HECW2	57520	broad.mit.edu	37	2	197208396	197208396	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:197208396G>A	uc002utm.1	-	3	568	c.385C>T	c.(385-387)CCC>TCC	p.P129S	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	129					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ATGAAATAGGGCCCAGGCTCA	0.363000													94	116					0	0	0.000147903	0	0
AAMP	14	broad.mit.edu	37	2	219131205	219131205	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:219131205G>A	uc002vhk.2	-	5	724	c.640C>T	c.(640-642)CCC>TCC	p.P214S	AAMP_uc002vhj.2_Missense_Mutation_p.P195S|AAMP_uc010fvo.2_Missense_Mutation_p.P214S|AAMP_uc002vhl.2_Missense_Mutation_p.P215S	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	214	WD 4.				angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCAGTTGGGACCCTGGAAG	0.612000													8	10					0	0	0.000157383	0	0
VIL1	7429	broad.mit.edu	37	2	219299365	219299365	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr2:219299365C>T	uc002via.2	+	14	1682	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F	VIL1_uc010zke.1_Silent_p.F228F|VIL1_uc002vib.2_Silent_p.F539F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	539	Gelsolin-like 5.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCCAATTTCCTCAATTCCA	0.562000													14	35					0	0	0.000219431	0	0
ZHX3	23051	broad.mit.edu	37	20	39831821	39831821	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr20:39831821G>A	uc002xjs.1	-	3	2114	c.1736C>T	c.(1735-1737)TCG>TTG	p.S579L	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Missense_Mutation_p.S579L|ZHX3_uc002xjt.1_Missense_Mutation_p.S579L|ZHX3_uc002xju.1_Missense_Mutation_p.S579L|ZHX3_uc002xjv.1_Missense_Mutation_p.S579L|ZHX3_uc002xjw.1_Missense_Mutation_p.S579L|ZHX3_uc010ggg.1_Missense_Mutation_p.S579L	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	579					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				GACCTTGGACGATGGGGAGAA	0.532000													44	75					0	0	0.000147903	0	0
LOC96610	96610	broad.mit.edu	37	22	23214075	23214075	+	RNA	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:23214075G>A	uc011aim.1	+	326		c.14152G>A								Parts of antibodies, mostly variable regions.												0						CCACAGCAAGGGGGACGGGAT	0.557000													24	63					0	0	0.000586117	0	0
ADORA2A	135	broad.mit.edu	37	22	24829686	24829686	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:24829686C>T	uc002zzx.2	+	4	1077	c.314C>T	c.(313-315)GCC>GTC	p.A105V	ADORA2A_uc002zzy.3_Missense_Mutation_p.A105V|ADORA2A_uc011ajs.1_Intron|C22orf45_uc003aaa.1_5'Flank|ADORA2A_uc010guo.1_3'UTR|ADORA2A_uc010gup.2_Missense_Mutation_p.A105V|ADORA2A_uc010guq.2_Missense_Mutation_p.A105V|ADORA2A_uc003aab.2_Missense_Mutation_p.A105V|ADORA2A_uc003aac.2_5'UTR	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	105	Cytoplasmic.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CGCTACATTGCCATCCGCATC	0.632000													9	30					0	0	6.40141e-05	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533863	31533864	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:31533863_31533864GG>AA	uc003aka.2	-	4	1027_1028	c.898_899CC>TT	c.(898-900)CCC>TTC	p.P300F		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	300					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TCGAGGCTTGGGAGGGGCTGGG	0.658000													35	61					0	0	6.4e-05	0	0
PATZ1	23598	broad.mit.edu	37	22	31741169	31741169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:31741169G>A	uc003akq.2	-	1	1081	c.420C>T	c.(418-420)GCC>GCT	p.A140A	PATZ1_uc003akp.2_Silent_p.A140A|PATZ1_uc003akr.2_Silent_p.A140A|PATZ1_uc003aks.2_Silent_p.A140A|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	140					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						GCAGGAACTTGGCGGCCGTCA	0.547000													36	65					0	0	0.000437636	0	0
TXN2	25828	broad.mit.edu	37	22	36876791	36876791	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:36876791G>A	uc003apk.1	-	2	171	c.94C>T	c.(94-96)CTG>TTG	p.L32L	TXN2_uc003apl.1_RNA	NM_012473	NP_036605	Q99757	THIOM_HUMAN	thioredoxin 2 precursor	32					cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	mitochondrion|nucleolus	electron carrier activity				0						GGGGTCTGCAGGGCTCTGGAA	0.562000													24	36					0	0	0.000117367	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334241	37334241	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:37334241G>A	uc003aqa.3	+	14	2608	c.2391G>A	c.(2389-2391)GGG>GGA	p.G797G	CSF2RB_uc003aqc.3_Silent_p.G803G	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	797	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TGAACCCAGGGGAACGCCCGG	0.652000													12	16					0	0	0.000422831	0	0
SEPT3	55964	broad.mit.edu	37	22	42377818	42377818	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr22:42377818C>T	uc003bbr.3	+	2	318	c.180C>T	c.(178-180)TTC>TTT	p.F60F	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_Silent_p.F60F|SEPT3_uc010gyr.2_Intron|SEPT3_uc011apj.1_Intron|SEPT3_uc010gys.2_5'UTR	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	60					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						AGACCGGTTTCGACTTCAACA	0.567000													4	7					0	0	0.00024832	0	0
SCN5A	6331	broad.mit.edu	37	3	38592525	38592525	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:38592525C>T	uc003cio.2	-	28	5532	c.5338G>A	c.(5338-5340)GAG>AAG	p.E1780K	SCN5A_uc003cin.2_Missense_Mutation_p.E1779K|SCN5A_uc003cil.3_Missense_Mutation_p.E1780K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1762K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1747K|SCN5A_uc011ayr.1_Missense_Mutation_p.E1726K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1780					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTGCTCTCCTCCGTGGCCACG	0.507000													22	39					0	0	0.000175454	0	0
SCN5A	6331	broad.mit.edu	37	3	38601660	38601660	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:38601660C>T	uc003cio.2	-	23	4417	c.4223G>A	c.(4222-4224)GGG>GAG	p.G1408E	SCN5A_uc003cin.2_Missense_Mutation_p.G1407E|SCN5A_uc003cil.3_Missense_Mutation_p.G1408E|SCN5A_uc010hhi.2_Missense_Mutation_p.G1408E|SCN5A_uc010hhk.2_Missense_Mutation_p.G1407E|SCN5A_uc011ayr.1_Missense_Mutation_p.G1354E|SCN5A_uc010hhj.1_Missense_Mutation_p.G1018E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1408					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGCCAGGTACCCGGCCCCCAC	0.542000													4	4					0	0	1.23904e-05	0	0
ZNF620	253639	broad.mit.edu	37	3	40553021	40553021	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:40553021G>A	uc003ckk.2	+	3	234	c.85G>A	c.(85-87)GAC>AAC	p.D29N	ZNF620_uc003ckl.2_Intron	NM_175888	NP_787084	Q6ZNG0	ZN620_HUMAN	zinc finger protein 620	29	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		GGCCAGCCTGGACTCTGTGCA	0.507000													32	47					0	0	0.00058488	0	0
TRAK1	22906	broad.mit.edu	37	3	42226209	42226209	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:42226209C>T	uc003cky.2	+	4	612	c.396C>T	c.(394-396)ATC>ATT	p.I132I	TRAK1_uc011azh.1_Silent_p.I132I|TRAK1_uc011azi.1_Silent_p.I132I|TRAK1_uc003ckz.3_Silent_p.I58I|TRAK1_uc011azj.1_Silent_p.I58I|TRAK1_uc003cla.2_Silent_p.I74I	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	132	Potential.|HAP1 N-terminal.				endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CCGCTCGCATCGGCCAGTCGT	0.507000													49	79					0	0	0.000147903	0	0
NKTR	4820	broad.mit.edu	37	3	42660522	42660522	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:42660522C>T	uc003clo.2	+	4	291	c.144C>T	c.(142-144)GGC>GGT	p.G48G	NKTR_uc003cll.1_Silent_p.G48G|NKTR_uc003clm.1_5'UTR|NKTR_uc003clp.2_5'UTR|NKTR_uc011azp.1_5'UTR|NKTR_uc003clq.1_5'Flank	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	48	PPIase cyclophilin-type.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		GAGAGAAAGGCCTTGGGAAAA	0.343000													26	36					0	0	9.22233e-05	0	0
SETD2	29072	broad.mit.edu	37	3	47155463	47155463	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:47155463A>G	uc003cqs.2	-	5	4671	c.4618T>C	c.(4618-4620)TCC>CCC	p.S1540P	SETD2_uc003cqv.2_Missense_Mutation_p.S1529P	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1540	AWS.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CGTCTATTGGAACAATAATCC	0.393000			N|F|S|Mis		clear cell renal carcinoma								20	66					0	0	0.000375601	0	0
ABI3BP	25890	broad.mit.edu	37	3	100527030	100527030	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:100527030G>A	uc003dun.2	-	19	1732	c.1647C>T	c.(1645-1647)CGC>CGT	p.R549R	ABI3BP_uc003duj.2_Silent_p.R104R|ABI3BP_uc003duk.2_Silent_p.R233R|ABI3BP_uc003dul.2_Silent_p.R354R|ABI3BP_uc011bhd.1_Silent_p.R503R|ABI3BP_uc003dum.2_5'UTR	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	549	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GGATTCTTGGGCGTGGTGATG	0.393000													11	24					0	0	0.000308642	0	0
MYLK	4638	broad.mit.edu	37	3	123457789	123457789	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:123457789G>A	uc003ego.2	-	7	825	c.543C>T	c.(541-543)TCC>TCT	p.S181S	MYLK_uc011bjw.1_Silent_p.S181S|MYLK_uc003egp.2_Silent_p.S181S|MYLK_uc003egq.2_Silent_p.S181S|MYLK_uc003egr.2_Silent_p.S181S|MYLK_uc003egs.2_Silent_p.S5S|MYLK_uc010hrs.1_Silent_p.S181S	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	181	Ig-like C2-type 2.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGATCTTGCAGGAGAATCGTC	0.537000													9	11					0	0	0.000274275	0	0
LEPREL1	55214	broad.mit.edu	37	3	189681802	189681803	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr3:189681802_189681803CC>TT	uc011bsk.1	-	14	2366_2367	c.1978_1979GG>AA	c.(1978-1980)GGA>AAA	p.G660K	LEPREL1_uc003fsg.2_Missense_Mutation_p.G479K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	660	Fe2OG dioxygenase.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACACCTCTTTCCCTTGGTGACT	0.495000													34	35					0	0	6.4e-05	0	0
PTTG2	10744	broad.mit.edu	37	4	37962576	37962577	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:37962576_37962577GG>TT	uc011bye.1	+	1	521_522	c.521_522GG>TT	c.(520-522)TGG>TTT	p.W174F	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	174					chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						TCTCCACCATGGGAATGCAATC	0.470000													8	235					0	0	6.4e-05	0	0
GABRB1	2560	broad.mit.edu	37	4	47163300	47163300	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:47163300G>A	uc003gxh.2	+	4	649	c.275G>A	c.(274-276)TGG>TAG	p.W92*	GABRB1_uc011bze.1_Nonsense_Mutation_p.W22*	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	92	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAGCAGTCTTGGAAAGACAAA	0.358000													31	64					0	0	0.000339439	0	0
CORIN	10699	broad.mit.edu	37	4	47746434	47746434	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:47746434C>T	uc003gxm.2	-	5	877	c.784G>A	c.(784-786)GAA>AAA	p.E262K	CORIN_uc011bzf.1_Missense_Mutation_p.E123K|CORIN_uc011bzg.1_Missense_Mutation_p.E195K|CORIN_uc011bzh.1_Missense_Mutation_p.E262K|CORIN_uc011bzi.1_Missense_Mutation_p.E262K|CORIN_uc003gxn.3_Missense_Mutation_p.E262K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	262	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TTTCCGTTTTCCTGCTGAGGT	0.308000													52	69					0	0	0.000147903	0	0
GRID2	2895	broad.mit.edu	37	4	94032039	94032039	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:94032039C>T	uc011cdt.1	+	4	928	c.670C>T	c.(670-672)CGA>TGA	p.R224*	GRID2_uc010ikx.2_Nonsense_Mutation_p.R224*|GRID2_uc011cdu.1_Nonsense_Mutation_p.R129*|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	224	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GAATCGCTATCGAGACACTCT	0.413000													44	70					0	0	0.000147903	0	0
GRID2	2895	broad.mit.edu	37	4	94316831	94316831	+	Missense_Mutation	SNP	G	A	A	rs76699542		TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:94316831G>A	uc011cdt.1	+	9	1577	c.1319G>A	c.(1318-1320)GGA>GAA	p.G440E	GRID2_uc011cdu.1_Missense_Mutation_p.G345E	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	440	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AACATGCGTGGAGTGGTTCTA	0.393000													29	55					0	0	0.000132358	0	0
ADH6	130	broad.mit.edu	37	4	100137326	100137326	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:100137326G>A	uc003hup.3	-	2	206	c.112C>T	c.(112-114)CGC>TGC	p.R38C	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.R38C|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Missense_Mutation_p.R38C	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	38					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	ACCTTTATGCGAACTTCCTTT	0.393000													22	47					0	0	0.000375601	0	0
FAT4	79633	broad.mit.edu	37	4	126336923	126336923	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:126336923C>T	uc003ifj.3	+	5	6805	c.6805C>T	c.(6805-6807)CCT>TCT	p.P2269S	FAT4_uc011cgp.1_Missense_Mutation_p.P567S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2269	Extracellular (Potential).|Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTAAATGTCCCTGAGAATTT	0.368000													14	25					0	0	0.000219431	0	0
LARP1B	55132	broad.mit.edu	37	4	129003391	129003391	+	Missense_Mutation	SNP	C	G	G	rs144025629		TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:129003391C>G	uc003iga.2	+	5	420	c.289C>G	c.(289-291)CGG>GGG	p.R97G	LARP1B_uc003ifw.1_Intron|LARP1B_uc003ifx.2_Missense_Mutation_p.R97G|LARP1B_uc003ify.2_Missense_Mutation_p.R97G|LARP1B_uc003ifz.1_Missense_Mutation_p.R97G	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	97							RNA binding				0						ACCTGGATCCCGGAACAGCTC	0.373000													3	71					0	0	6.4e-05	0	0
DDX60	55601	broad.mit.edu	37	4	169227844	169227844	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:169227844G>A	uc003irp.2	-	5	584	c.292C>T	c.(292-294)CCT>TCT	p.P98S		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	98							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AGAAGTTCAGGGAAGTTGAAA	0.353000													24	29					0	0	9.22233e-05	0	0
ODZ3	55714	broad.mit.edu	37	4	183245230	183245230	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:183245230G>A	uc003ivd.1	+	1	94	c.57G>A	c.(55-57)AAG>AAA	p.K19K	ODZ3_uc010irv.1_Silent_p.K19K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	19	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GACGAGAGAAGGAACGGCGCT	0.507000													9	26					0	0	0.000442599	0	0
UFSP2	55325	broad.mit.edu	37	4	186336380	186336380	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr4:186336380C>G	uc003ixo.2	-	6	730	c.613G>C	c.(613-615)GGG>CGG	p.G205R	UFSP2_uc003ixn.2_Missense_Mutation_p.G95R|UFSP2_uc003ixq.2_Missense_Mutation_p.G95R|UFSP2_uc003ixp.2_RNA	NM_018359	NP_060829	Q9NUQ7	UFSP2_HUMAN	UFM1-specific peptidase 2	205						endoplasmic reticulum|nucleus	small conjugating protein-specific protease activity				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;3.4e-25)|Epithelial(43;2.23e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;8.1e-05)|GBM - Glioblastoma multiforme(59;0.000148)|STAD - Stomach adenocarcinoma(60;0.000782)|LUSC - Lung squamous cell carcinoma(40;0.00939)|COAD - Colon adenocarcinoma(29;0.0108)|READ - Rectum adenocarcinoma(43;0.166)		TTTTTTTTCCCTGGTAATAAA	0.348000													3	43					0	0	6.4e-05	0	0
CDH18	1016	broad.mit.edu	37	5	19483630	19483630	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:19483630C>T	uc003jgc.2	-	11	2039	c.1662G>A	c.(1660-1662)AGG>AGA	p.R554R	CDH18_uc003jgd.2_Silent_p.R554R|CDH18_uc011cnm.1_Intron	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	554	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GACTAAATCTCCTCCGCCTTG	0.443000													19	26					0	0	0.000375601	0	0
C6	729	broad.mit.edu	37	5	41160404	41160404	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:41160404C>T	uc003jmk.2	-	11	1734	c.1524G>A	c.(1522-1524)AGG>AGA	p.R508R	C6_uc003jml.1_Silent_p.R508R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	508	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCAAAGCTTTCCTGAGGTTGT	0.522000													30	54					0	0	0.000339439	0	0
IL31RA	133396	broad.mit.edu	37	5	55155392	55155392	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:55155392G>A	uc003jql.2	+	2	184	c.119G>A	c.(118-120)TGG>TAG	p.W40*	IL31RA_uc003jqk.2_Nonsense_Mutation_p.W40*|IL31RA_uc011cqj.1_5'UTR|IL31RA_uc003jqm.2_Nonsense_Mutation_p.W8*|IL31RA_uc003jqn.2_Nonsense_Mutation_p.W40*|IL31RA_uc010iwa.1_Nonsense_Mutation_p.W8*|IL31RA_uc003jqo.2_5'UTR	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	8					anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				TGGGCACTGTGGATGCTCCCC	0.473000													35	48					0	0	0.000374591	0	0
VCAN	1462	broad.mit.edu	37	5	82817593	82817593	+	Silent	SNP	T	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:82817593T>C	uc003kii.3	+	7	3824	c.3468T>C	c.(3466-3468)CCT>CCC	p.P1156P	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.P1156P|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1156	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CTTTGAGTCCTTTTAGTACCC	0.398000													4	72					0	0	1.23904e-05	0	0
CHD1	1105	broad.mit.edu	37	5	98229193	98229193	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:98229193G>A	uc003knf.2	-	13	2066	c.1918C>T	c.(1918-1920)CTT>TTT	p.L640F		NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	640	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	CCAGTGATAAGGAGACGATGA	0.343000													55	83					0	0	0.000147903	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216016	140216016	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140216016C>T	uc003lhq.2	+	1	2048	c.2048C>T	c.(2047-2049)TCG>TTG	p.S683L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.S683L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	683	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCGGGCATCGTTGGGCATT	0.632000													23	28					0	0	0.000295444	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432780	140432780	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140432780C>T	uc003lik.1	+	1	1802	c.1725C>T	c.(1723-1725)GAC>GAT	p.D575D		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	575	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGCAATGACCTGGTGCCCA	0.493000													9	47					0	0	0.000274275	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503831	140503831	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140503831G>A	uc003lip.1	+	1	2251	c.2251G>A	c.(2251-2253)GAG>AAG	p.E751K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	751	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTACCAGTACGAGGTGTGTCT	0.597000													31	45					0	0	0.000409698	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515278	140515278	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140515278G>A	uc003liq.2	+	1	479	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	88	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTTCTATATGAAAAACTAGA	0.473000													33	46					0	0	0.000409698	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711066	140711066	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140711066G>A	uc003lji.1	+	1	815	c.815G>A	c.(814-816)GGA>GAA	p.G272E	PCDHGA1_uc011dan.1_Missense_Mutation_p.G272E	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	272	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGATGAGGGAGCCAATGGG	0.448000													14	25					0	0	0.000308642	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865726	140865726	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:140865726C>T	uc003lky.1	+	1	986	c.986C>T	c.(985-987)GCC>GTC	p.A329V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.A329V	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	329	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTCTCCAGCCATGGAGCAA	0.522000													9	30					0	0	0.000274275	0	0
ITK	3702	broad.mit.edu	37	5	156670656	156670656	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr5:156670656G>A	uc003lwo.1	+	12	1166	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	362					cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGACCCCTCAGAGCTCACTTT	0.498000			T	SYK	peripheral T-cell lymphoma								108	167					0	0	0.000147903	0	0
RPP40	10799	broad.mit.edu	37	6	4996556	4996556	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:4996556G>A	uc003mwl.2	-	6	693	c.658C>T	c.(658-660)CCA>TCA	p.P220S	RPP40_uc003mwm.2_Missense_Mutation_p.P197S	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	220					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				TGCAGCACTGGGCACTGGAGA	0.537000													22	53					0	0	0.000175454	0	0
F13A1	2162	broad.mit.edu	37	6	6224981	6224982	+	Missense_Mutation	DNP	CG	AT	AT	rs139164988		TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:6224981_6224982CG>AT	uc003mwv.2	-	7	1033_1034	c.910_911CG>AT	c.(910-912)CGG>ATG	p.R304M	F13A1_uc011dib.1_Missense_Mutation_p.R241M	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	304					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CTCAGAGCTCCGGTATTCCAAT	0.460000													6	132					0	0	6.4e-05	0	0
DSP	1832	broad.mit.edu	37	6	7583574	7583574	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:7583574G>A	uc003mxp.1	+	24	6358	c.6079G>A	c.(6079-6081)GAA>AAA	p.E2027K	DSP_uc003mxq.1_Missense_Mutation_p.E1428K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2027	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TTCTCCTAAGGAAAAATACTC	0.468000													44	33					0	0	0.000589545	0	0
TCP11	6954	broad.mit.edu	37	6	35088721	35088721	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:35088721C>A	uc003okd.2	-	6	900	c.719G>T	c.(718-720)CGG>CTG	p.R240L	TCP11_uc003ojz.1_Missense_Mutation_p.R165L|TCP11_uc003oka.2_Missense_Mutation_p.R165L|TCP11_uc003okb.2_Missense_Mutation_p.R164L|TCP11_uc003okc.2_Missense_Mutation_p.R164L|TCP11_uc011dsu.1_Missense_Mutation_p.R222L|TCP11_uc011dsv.1_Missense_Mutation_p.R189L|TCP11_uc011dsw.1_Missense_Mutation_p.R194L	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	227					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						GAATTTAGCCCGTTCATACTG	0.458000													10	397					6.40141e-05	0.00110798	6.40141e-05	1	0
TREM1	54210	broad.mit.edu	37	6	41254361	41254361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:41254361C>T	uc003oqf.1	-	1	97	c.33G>A	c.(31-33)TGG>TGA	p.W11*	TREM1_uc003oqg.1_Nonsense_Mutation_p.W11*	NM_018643	NP_061113	Q9NP99	TREM1_HUMAN	triggering receptor expressed on myeloid cells 1	11					blood coagulation|humoral immune response|intracellular signal transduction|leukocyte migration	extracellular region|integral to membrane|intracellular|plasma membrane	receptor activity			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)				Glutathione(DB00143)	CAAAGAGCATCCACAGCAGCC	0.577000													12	49					0	0	0.000151284	0	0
DSE	29940	broad.mit.edu	37	6	116752189	116752189	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:116752189G>C	uc003pws.2	+	4	937	c.743G>C	c.(742-744)AGG>ACG	p.R248T	DSE_uc011ebg.1_Missense_Mutation_p.R267T|DSE_uc003pwt.2_Missense_Mutation_p.R248T|DSE_uc003pwu.2_5'Flank	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	248					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GTCTTGCTCAGGGAGGTGACG	0.463000													3	43					0	0	1.23904e-05	0	0
LAMA2	3908	broad.mit.edu	37	6	129636925	129636925	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:129636925A>G	uc003qbn.2	+	26	3859	c.3754A>G	c.(3754-3756)AAA>GAA	p.K1252E	LAMA2_uc003qbo.2_Missense_Mutation_p.K1252E	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1252	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CTATGGGGGCAAACTCAAGTA	0.388000													45	17					0	0	0.000147903	0	0
SDK1	221935	broad.mit.edu	37	7	4213962	4213962	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:4213962C>T	uc003smx.2	+	33	5048	c.4909C>T	c.(4909-4911)CCT>TCT	p.P1637S	SDK1_uc010kso.2_Missense_Mutation_p.P913S|SDK1_uc003smy.2_Missense_Mutation_p.P124S	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1637	Fibronectin type-III 10.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCTCAAAAACCCTATAGCTTT	0.552000													23	85					0	0	0.000586117	0	0
PCLO	27445	broad.mit.edu	37	7	82545193	82545193	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:82545193C>T	uc003uhx.2	-	7	12398	c.12109G>A	c.(12109-12111)GAT>AAT	p.D4037N	PCLO_uc003uhv.2_Missense_Mutation_p.D4037N|PCLO_uc010lec.2_Missense_Mutation_p.D1002N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3968					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGATCAATATCTGCATAGAAA	0.398000													15	74					0	0	0.000422831	0	0
DOCK4	9732	broad.mit.edu	37	7	111381658	111381658	+	Silent	SNP	C	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:111381658C>A	uc003vfx.2	-	45	5099	c.4830G>T	c.(4828-4830)GTG>GTT	p.V1610V	DOCK4_uc011kml.1_Silent_p.V491V|DOCK4_uc011kmm.1_Silent_p.V517V|DOCK4_uc003vfw.2_Silent_p.V1060V|DOCK4_uc003vfy.2_Silent_p.V1655V|DOCK4_uc003vfv.2_5'Flank	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1610	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				AGTTTCTACACACACGAGGGC	0.423000													18	6					7.07596e-05	0.00121904	7.07596e-05	1	0
TSPAN12	23554	broad.mit.edu	37	7	120446649	120446649	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:120446649C>T	uc003vjk.2	-	7	940	c.566G>A	c.(565-567)TGT>TAT	p.C189Y	TSPAN12_uc010lkj.2_Missense_Mutation_p.C62Y	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	189	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					CTGTTTGGAACATCCTGGGAA	0.418000													21	39					0	0	0.000375601	0	0
GRM8	2918	broad.mit.edu	37	7	126173396	126173396	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:126173396C>T	uc003vlr.2	-	8	2351	c.2040G>A	c.(2038-2040)GGG>GGA	p.G680G	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.G680G|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	680	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CAGATTTCTTCCCCTGCTCAA	0.507000										HNSCC(24;0.065)			46	29					0	0	0.000147903	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				54	36					0	0	0.000147903	0	0
MGAM	8972	broad.mit.edu	37	7	141719069	141719069	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:141719069C>T	uc003vwy.2	+	4	452	c.398C>T	c.(397-399)TCC>TTC	p.S133F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	133	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGCTACTATTCCAAGAATCAT	0.512000													56	27					0	0	0.000147903	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269283	150269283	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:150269283G>A	uc003whl.2	+	3	207	c.125G>A	c.(124-126)GGA>GAA	p.G42E	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Missense_Mutation_p.G56E	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	42	GTP (Potential).						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCGGAGCAGGAAAAAGTGCA	0.463000													11	49					0	0	0.000151284	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959833	157959833	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr7:157959833C>T	uc003wno.2	-	6	821	c.700G>A	c.(700-702)GAC>AAC	p.D234N	PTPRN2_uc003wnp.2_Missense_Mutation_p.D217N|PTPRN2_uc003wnq.2_Missense_Mutation_p.D234N|PTPRN2_uc003wnr.2_Missense_Mutation_p.D196N|PTPRN2_uc011kwa.1_Missense_Mutation_p.D257N	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	234	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		ACACCACTGTCCACCTTAGGG	0.692000													26	10					0	0	0.000184323	0	0
FLJ10661	286042	broad.mit.edu	37	8	8092007	8092007	+	RNA	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:8092007C>T	uc011kwt.1	+	4		c.375C>T			FLJ10661_uc010lrq.2_Intron|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						GCCCCCAGCACGAGGCTGTCC	0.438000													10	23					0	0	3.86212e-05	0	0
SH2D4A	63898	broad.mit.edu	37	8	19221586	19221586	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:19221586G>A	uc003wzb.2	+	7	1046	c.710G>A	c.(709-711)CGA>CAA	p.R237Q	SH2D4A_uc011kym.1_Missense_Mutation_p.R192Q|SH2D4A_uc003wzc.2_Missense_Mutation_p.R237Q	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	237						cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		TTTCCAGTGCGAAAATCCAAA	0.537000													26	25					0	0	0.000184323	0	0
ANK1	286	broad.mit.edu	37	8	41550337	41550337	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:41550337C>T	uc003xok.2	-	31	3771	c.3687G>A	c.(3685-3687)CTG>CTA	p.L1229L	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.L545L|ANK1_uc003xoi.2_Silent_p.L1229L|ANK1_uc003xoj.2_Silent_p.L1229L|ANK1_uc003xol.2_Silent_p.L1229L|ANK1_uc003xom.2_Silent_p.L1270L	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1229					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCTCTTTGTACAGCAGGGTGG	0.542000													62	138					0	0	0.000147903	0	0
RUNX1T1	862	broad.mit.edu	37	8	93023292	93023292	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:93023292G>A	uc003yfd.2	-	4	580	c.496C>T	c.(496-498)CAT>TAT	p.H166Y	RUNX1T1_uc003yfc.1_Missense_Mutation_p.H139Y|RUNX1T1_uc003yfe.1_Missense_Mutation_p.H129Y|RUNX1T1_uc010mao.2_Missense_Mutation_p.H139Y|RUNX1T1_uc011lgi.1_Missense_Mutation_p.H177Y|RUNX1T1_uc003yfh.1_Missense_Mutation_p.H129Y|RUNX1T1_uc003yfb.1_Missense_Mutation_p.H129Y|RUNX1T1_uc003yff.1_Missense_Mutation_p.H129Y|RUNX1T1_uc003yfg.1_Missense_Mutation_p.H129Y	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	166	TAFH.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AGTTTGGAATGAAATTCTTCA	0.318000													62	54					0	0	0.000147903	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141231633	141231633	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:141231633G>A	uc003yvj.2	-	17	2615	c.2481C>T	c.(2479-2481)GTC>GTT	p.V827V	TRAPPC9_uc003yvh.2_Silent_p.V925V|TRAPPC9_uc010mel.1_Silent_p.V248V|TRAPPC9_uc003yvi.1_Silent_p.V818V	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	827					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GGGGCCGAACGACCTGCCGAA	0.522000													25	16					0	0	0.000586117	0	0
RECQL4	9401	broad.mit.edu	37	8	145740779	145740779	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr8:145740779G>A	uc003zdj.2	-	7	1353	c.1321C>T	c.(1321-1323)CCT>TCT	p.P441S	LRRC14_uc003zdk.1_5'Flank|LRRC14_uc003zdl.1_5'Flank	NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	441			P -> S.		DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			GGCACCTCAGGTACAGGTTGT	0.627000			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				12	47					0	0	0.000151284	0	0
GLIS3	169792	broad.mit.edu	37	9	3879532	3879532	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr9:3879532G>T	uc003zhw.1	-	7	1921	c.1727C>A	c.(1726-1728)CCA>CAA	p.P576Q	GLIS3_uc003zhx.1_Missense_Mutation_p.P731Q|GLIS3_uc010mhf.1_Missense_Mutation_p.P125Q|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.P509Q	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	576					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GACAGGATGTGGGGGTGGTAC	0.557000													25	9					9.39395e-14	1.66484e-12	0.000147802	1	0
TPD52L3	89882	broad.mit.edu	37	9	6328770	6328770	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr9:6328770G>A	uc003zjw.2	+	1	396	c.175G>A	c.(175-177)GAA>AAA	p.E59K	TPD52L3_uc003zjv.2_Missense_Mutation_p.E59K|TPD52L3_uc003zjx.1_Missense_Mutation_p.E59K	NM_033516	NP_277051	Q96J77	TPD55_HUMAN	protein kinase NYD-SP25 isoform 1	59							protein binding				0		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0198)|Lung(218;0.1)		ACGCTGTGGGGAACTCAAGAG	0.502000													13	6					0	0	0.00010058	0	0
LINGO2	158038	broad.mit.edu	37	9	27950117	27950117	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr9:27950117C>T	uc003zqu.1	-	2	747	c.553G>A	c.(553-555)GAG>AAG	p.E185K	LINGO2_uc010mjf.1_Missense_Mutation_p.E185K|LINGO2_uc003zqv.1_Missense_Mutation_p.E185K	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	185	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TTGCATTTCTCCAGGGTGAGC	0.473000													18	13					0	0	7.07596e-05	0	0
NAA35	60560	broad.mit.edu	37	9	88577022	88577022	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr9:88577022C>T	uc004aoi.3	+	6	580	c.443C>T	c.(442-444)GCT>GTT	p.A148V	NAA35_uc004aoj.3_Missense_Mutation_p.A148V|NAA35_uc004aok.1_Missense_Mutation_p.A148V	NM_024635	NP_078911	Q5VZE5	NAA35_HUMAN	corneal wound healing-related protein	148					smooth muscle cell proliferation	cytoplasm|nucleus|plasma membrane				skin(2)|central_nervous_system(1)	3						GCTATGAAGGCTTTTGCTCTG	0.368000													20	15					0	0	0.000175454	0	0
ZNF883	169834	broad.mit.edu	37	9	115759834	115759834	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr9:115759834G>A	uc011lwy.1	-	5	1945	c.706C>T	c.(706-708)CCC>TCC	p.P236S		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	236					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACTCATAGGGTTTTTCTCCA	0.423000													20	7					0	0	0.000132079	0	0
MAGEE1	57692	broad.mit.edu	37	X	75651013	75651013	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:75651013A>G	uc004ecm.1	+	1	2897	c.2690A>G	c.(2689-2691)TAT>TGT	p.Y897C		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	897	Interaction with DTNA (By similarity).|MAGE 2.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CCAGTGCAATATGAGTTTGTA	0.478000													19	4					0	0	0.000295444	0	0
DOCK11	139818	broad.mit.edu	37	X	117805075	117805075	+	Silent	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:117805075C>T	uc004eqp.2	+	46	5229	c.5166C>T	c.(5164-5166)ATC>ATT	p.I1722I	DOCK11_uc004eqq.2_Silent_p.I1501I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1722	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						CCAAGTTGATCGTTCCAATTT	0.353000													45	7					0	0	0.000147903	0	0
ODZ1	10178	broad.mit.edu	37	X	123518420	123518420	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:123518420C>T	uc004euj.2	-	29	6404	c.6340G>A	c.(6340-6342)GAA>AAA	p.E2114K	ODZ1_uc011muj.1_Missense_Mutation_p.E2120K|ODZ1_uc010nqy.2_Missense_Mutation_p.E2121K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2114	Extracellular (Potential).|YD 16.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTTAGGATTTCATATTGGACT	0.373000													50	12					0	0	0.000147903	0	0
CT45A5	441521	broad.mit.edu	37	X	134947909	134947909	+	Missense_Mutation	SNP	C	T	T	rs143395460	byFrequency	TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:134947909C>T	uc004eze.2	-	3	661	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	CT45A5_uc011mvu.1_Missense_Mutation_p.R139Q	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	139											0						CTACTTACTTCGTCCAAGGCA	0.388000													53	17					0	0	0.000147903	0	0
FHL1	2273	broad.mit.edu	37	X	135289972	135289972	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:135289972A>T	uc004ezo.2	+	4	453	c.353A>T	c.(352-354)AAG>ATG	p.K118M	FHL1_uc010nrz.2_Missense_Mutation_p.K118M|FHL1_uc004ezm.2_Intron|FHL1_uc004ezl.2_Missense_Mutation_p.K118M|FHL1_uc004ezq.2_Missense_Mutation_p.K118M|FHL1_uc011mvy.1_Missense_Mutation_p.K118M|FHL1_uc011mvz.1_Missense_Mutation_p.K118M|FHL1_uc004ezn.2_Missense_Mutation_p.K118M|FHL1_uc011mwa.1_Missense_Mutation_p.K147M|FHL1_uc011mwb.1_RNA|FHL1_uc004ezp.2_Missense_Mutation_p.K134M|FHL1_uc004ezr.2_Translation_Start_Site	NM_001159702	NP_001153174	Q13642	FHL1_HUMAN	four and a half LIM domains 1 isoform 1	118	LIM zinc-binding 2.				cell differentiation|cell growth|muscle organ development|organ morphogenesis	cytosol|nucleus|plasma membrane	protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					GTGGAGTACAAGGGGACCGTC	0.567000													4	10					0	0	0.00024832	0	0
CDR1	1038	broad.mit.edu	37	X	139866084	139866084	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:139866084T>A	uc004fbg.1	-	1	640	c.448A>T	c.(448-450)AGA>TGA	p.R150*	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	150	6 X 6 AA approximate repeats.|2.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				AATCTACGTCTTCCAAAAAAG	0.438000													89	27					0	0	0.000147903	0	0
PDZD4	57595	broad.mit.edu	37	X	153071017	153071017	+	Silent	SNP	G	A	A			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:153071017G>A	uc004fiz.1	-	6	844	c.594C>T	c.(592-594)ATC>ATT	p.I198I	PDZD4_uc004fiy.1_Silent_p.I123I|PDZD4_uc004fix.2_Silent_p.I102I|PDZD4_uc004fja.1_Silent_p.I204I|PDZD4_uc011mze.1_Silent_p.I89I	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	198	PDZ.					cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCTGGCTCAGGATGGCCACCG	0.622000													21	10					0	0	9.22233e-05	0	0
ABCB9	23457	broad.mit.edu	37	12	123425520	123425520	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr12:123425520delC	uc001udm.3	-	8	1713	c.1403delG	c.(1402-1404)GGCfs	p.G468fs	ABCB9_uc010tai.1_Frame_Shift_Del_p.G75fs|ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Frame_Shift_Del_p.G425fs|ABCB9_uc010taj.1_Intron|ABCB9_uc001udp.2_Frame_Shift_Del_p.G468fs|ABCB9_uc001udq.2_Intron|ABCB9_uc001udr.2_Frame_Shift_Del_p.G468fs	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	468	ABC transmembrane type-1.				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		CTGCATCAGGCCACTGTAGAC	0.647													2	4	---	---	---	---					
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chr6:32063513_32063514delAC	uc003nzl.2	-	3	2318_2319	c.2116_2117delGT	c.(2116-2118)GTAfs	p.V706fs		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	706	EGF-like 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAAGCCCTCTACACACACACAC	0.668													7	239	---	---	---	---					
NR0B1	190	broad.mit.edu	37	X	30326975	30326975	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZR-06A-21D-A197-08	TCGA-FS-A1ZR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c9cc5d5d-8138-4152-b438-80205e89997a	ba68f51e-905c-4dc0-aef0-91b38a158616	g.chrX:30326975delC	uc004dcf.3	-	1	521	c.506delG	c.(505-507)GGCfs	p.G169fs		NM_000475	NP_000466	P51843	NR0B1_HUMAN	nuclear receptor subfamily 0, group B, member 1	169	4 X 67 AA tandem repeats.|3.				adrenal gland development|hypothalamus development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of steroid hormone receptor signaling pathway|pituitary gland development|protein localization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid biosynthetic process	cytoplasm|membrane fraction|nucleoplasm|nucleus|polysomal ribosome	AF-2 domain binding|DNA hairpin binding|ligand-regulated transcription factor activity|protein domain specific binding|protein homodimerization activity|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|steroid hormone receptor binding|transcription corepressor activity|transcription factor binding			ovary(1)|lung(1)	2					Dexamethasone(DB01234)|Tretinoin(DB00755)	CCACCACGCGCCCCCTGGCCG	0.682											OREG0019719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
