Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF10	100132406	broad.mit.edu	37	1	145296403	145296403	+	Silent	SNP	C	T	T	rs4996269	by1000genomes	TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr1:145296403C>T	uc001end.3	+	3	360	c.325C>T	c.(325-327)CTA>TTA	p.L109L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Silent_p.L109L|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	109											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GCTGACCCAGCTAAGGGAGAA	0.517000													8	313					0	0	5.18039e-06	0	0
IDE	3416	broad.mit.edu	37	10	94294477	94294478	+	Nonsense_Mutation	DNP	CC	AA	AA	rs74593235		TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr10:94294477_94294478CC>AA	uc001kia.2	-	3	424_425	c.348_349GG>TT	c.(346-351)TTGGGA>TTTTGA	p.116_117LG>F*		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	116_117					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTCTTTGTTCCCAAAAAAAGCA	0.356000													9	342					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124409642	124409642	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr12:124409642T>C	uc001uft.3	+	67	11483	c.11458T>C	c.(11458-11460)TAC>CAC	p.Y3820H	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3820	TPR 4.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCCCTTGGGTTACGATAACAA	0.473000													3	41					0	0	6.4e-05	0	0
ENTPD5	957	broad.mit.edu	37	14	74443068	74443068	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr14:74443068C>G	uc010tuo.1	-	9	912	c.601G>C	c.(601-603)GGG>CGG	p.G201R	ENTPD5_uc001xpi.2_Missense_Mutation_p.G201R	NM_001249	NP_001240	O75356	ENTP5_HUMAN	ectonucleoside triphosphate diphosphohydrolase 5	201					'de novo' posttranslational protein folding|ATP metabolic process|cell growth|cell proliferation|glycolysis|protein N-linked glycosylation|regulation of phosphatidylinositol 3-kinase cascade	endoplasmic reticulum lumen	guanosine-diphosphatase activity|uridine-diphosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00394)		GAGGCTCCCCCTAGGTCCAAG	0.542000													3	58					0	0	2.56e-06	0	0
TMEM208	29100	broad.mit.edu	37	16	67261098	67261099	+	Translation_Start_Site	DNP	CG	AT	AT			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr16:67261098_67261099CG>AT	uc002esi.2	+	1	83_84	c.-23_-22CG>AT	c.(-25--20)CCCGGG>CCATGG		LRRC29_uc002ese.2_5'Flank|LRRC29_uc002esf.2_5'Flank|LRRC29_uc002esg.2_5'Flank|LRRC29_uc010vjg.1_5'Flank|TMEM208_uc002esj.2_RNA	NM_014187	NP_054906	Q9BTX3	TM208_HUMAN	HSPC171 protein							integral to membrane					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		CCGTGTTTCCCGGGCTGGGTAT	0.589000													6	132					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21233980	21233981	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr2:21233980_21233981CC>AA	uc002red.2	-	26	5887_5888	c.5759_5760GG>TT	c.(5758-5760)TGG>TTT	p.W1920F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1920					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TATGTTCTCCCCAGAGAGCGAG	0.455000													11	423					0	0	6.4e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													4	65					0	0	1.23904e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													4	64					0	0	1.23904e-05	0	0
ACE2	59272	broad.mit.edu	37	X	15590364	15590364	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chrX:15590364A>G	uc004cxa.1	-	12	1792	c.1624T>C	c.(1624-1626)TGT>CGT	p.C542R	ACE2_uc004cxb.2_Missense_Mutation_p.C542R	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	542	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	GAGATGTCACATTTGTGCAGA	0.408000													3	121					0	0	6.4e-05	0	0
SCHIP1	29970	broad.mit.edu	37	3	159482571	159482571	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr3:159482571delG	uc003fcs.1	+	2	469	c.403delG	c.(403-405)GGGfs	p.G135fs	SCHIP1_uc003fcq.1_Frame_Shift_Del_p.G211fs|SCHIP1_uc003fcr.1_Frame_Shift_Del_p.G124fs|SCHIP1_uc003fct.1_Frame_Shift_Del_p.G135fs|SCHIP1_uc010hvz.1_Frame_Shift_Del_p.G108fs	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	135	Poly-Gly.					cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			CGGCGGCGGCGGGGGCAGGAG	0.682													2	4	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149476668	149476669	+	Frame_Shift_Ins	INS	-	A	A	rs80289627		TCGA-GN-A261-06A-12D-A197-08	TCGA-GN-A261-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f57cdf6a-33d6-4723-a70a-121cda122019	4f87b59e-99a2-463f-813a-620ead1ed69d	g.chr7:149476668_149476669insA	uc010lpk.2	+	10	1118_1119	c.1118_1119insA	c.(1117-1119)CCCfs	p.P373fs	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	373	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGTGACAGCCCCTGGGGCTCA	0.614													2	4	---	---	---	---					
