Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562													17	30					0	0	0.000958276	0	0
MIR200B	406984	broad.mit.edu	37	1	1102527	1102527	+	RNA	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:1102527G>A	hsa-mir-200b|MI0000342	+			c.44G>A			uc001acw.2_RNA|uc010nye.1_5'Flank|MIR200A_hsa-mir-200a|MI0000737_5'Flank|uc010nyf.1_5'Flank|MIR429_hsa-mir-429|MI0001641_5'Flank																	0						AGCATTGGATGGAGTCAGGTC	0.692													13	16					0	0	0.000308642	0	0
ATAD3C	219293	broad.mit.edu	37	1	1387775	1387775	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:1387775C>T	uc001aft.2	+	3	1178	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	61							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGGAAGGATTCCGTGCCTTTG	0.577													46	41					0	0	0.000781405	0	0
KIAA1751	85452	broad.mit.edu	37	1	1887281	1887281	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:1887281G>A	uc001aim.1	-	18	2181	c.2025C>T	c.(2023-2025)CTC>CTT	p.L675L	KIAA1751_uc009vkz.1_Silent_p.L675L	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	675										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CGTAGGTCAGGAGACTGCTCT	0.567													25	23					0	0	0.000586117	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3391301	3391301	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:3391301C>T	uc001akg.3	+	9	1583	c.1335C>T	c.(1333-1335)TCC>TCT	p.S445S	ARHGEF16_uc001aki.2_Silent_p.S157S|ARHGEF16_uc001akj.2_Silent_p.S157S|ARHGEF16_uc010nzh.1_Silent_p.S149S	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	445	DH.|Required for RHOG activation and mediates interaction with EPHA2.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		AGGGCCACTCCGAAAGGTACA	0.632													26	38					0	0	0.000227799	0	0
TAS1R1	80835	broad.mit.edu	37	1	6635078	6635078	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:6635078G>A	uc001ant.2	+	3	886	c.886G>A	c.(886-888)GTG>ATG	p.V296M	TAS1R1_uc001anu.2_Intron|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_Missense_Mutation_p.V296M	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	296	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		GACTGGCAAGGTGTGGGTCGC	0.647													17	29					0	0	0.000175454	0	0
RERE	473	broad.mit.edu	37	1	8424277	8424277	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:8424277G>A	uc001ape.2	-	16	2389	c.1579C>T	c.(1579-1581)CTG>TTG	p.L527L	RERE_uc001apf.2_Silent_p.L527L|RERE_uc010nzx.1_Silent_p.L259L|RERE_uc001apd.2_5'UTR	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	527	GATA-type.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GTGCAAAGCAGGATGTTCTCC	0.582													54	48					0	0	0.000781405	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561796	11561797	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:11561796_11561797CC>TT	uc001ash.3	+	2	885_886	c.747_748CC>TT	c.(745-750)GCCCGC>GCTTGC	p.R250C	PTCHD2_uc001asi.1_Missense_Mutation_p.R250C	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	250	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		AGAGCCGTGCCCGCCGAGGCGC	0.683													9	5					0	0	6.4e-05	0	0
HSPB7	27129	broad.mit.edu	37	1	16344347	16344347	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:16344347C>T	uc001axo.2	-	1	939	c.112G>A	c.(112-114)GAC>AAC	p.D38N	HSPB7_uc001axp.2_Missense_Mutation_p.D126N|HSPB7_uc001axq.2_Missense_Mutation_p.D126N|HSPB7_uc001axr.2_Missense_Mutation_p.D126N|HSPB7_uc001axs.2_Missense_Mutation_p.D113N|CLCNKA_uc001axt.2_5'Flank	NM_014424	NP_055239	Q9UBY9	HSPB7_HUMAN	cardiovascular heat shock protein	38	Required for localization to SC35 splicing speckles.				regulation of heart contraction|response to heat|response to unfolded protein	Cajal body	protein C-terminus binding				0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.21e-08)|COAD - Colon adenocarcinoma(227;5.5e-06)|BRCA - Breast invasive adenocarcinoma(304;9.08e-05)|Kidney(64;0.000162)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		ATGGGCGGGTCCTGGGCCGGG	0.512													9	7					0	0	0.000978159	0	0
TMCO4	255104	broad.mit.edu	37	1	20097818	20097818	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:20097818G>A	uc001bcn.2	-	5	579	c.337C>T	c.(337-339)CCG>TCG	p.P113S	TMCO4_uc001bcm.2_Missense_Mutation_p.P113S|TMCO4_uc001bco.1_Missense_Mutation_p.P113S|TMCO4_uc001bcp.1_Missense_Mutation_p.P113S|TMCO4_uc009vpn.1_Missense_Mutation_p.P113S|TMCO4_uc001bcq.1_Missense_Mutation_p.P113S	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	113						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		ATCACCGTCGGGTCGTCCTTC	0.478													73	71					0	0	0.000781405	0	0
DDOST	1650	broad.mit.edu	37	1	20987434	20987434	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:20987434G>A	uc001bdo.1	-	2	399	c.256C>T	c.(256-258)CTC>TTC	p.L86F	DDOST_uc009vpw.1_Missense_Mutation_p.L86F|DDOST_uc010odd.1_5'UTR|DDOST_uc010ode.1_Intron	NM_005216	NP_005207	P39656	OST48_HUMAN	dolichyl-diphosphooligosaccharide-protein	86	Lumenal (Potential).				innate immune response|post-translational protein modification|response to cytokine stimulus|T cell activation	integral to membrane|microsome|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0		all_lung(284;2.98e-05)|Lung NSC(340;3.25e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000141)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00046)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TACTTTATGAGAGACAGGCTG	0.512													13	22					0	0	0.000566183	0	0
KIF17	57576	broad.mit.edu	37	1	21009241	21009241	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:21009241C>T	uc001bdr.3	-	11	2486	c.2368G>A	c.(2368-2370)GAG>AAG	p.E790K	KIF17_uc001bdp.3_Missense_Mutation_p.E68K|KIF17_uc001bdq.3_Missense_Mutation_p.E68K|KIF17_uc009vpx.2_Missense_Mutation_p.E160K|KIF17_uc001bds.3_Missense_Mutation_p.E790K	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	790	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		CCGCTGTCCTCATCCGAGTTC	0.607													29	28					0	0	0.000184323	0	0
AIM1L	55057	broad.mit.edu	37	1	26650801	26650801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:26650801G>A	uc001bmd.3	-	17	1874	c.1444C>T	c.(1444-1446)CGC>TGC	p.R482C		NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	482							sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TAAACCCGGCGCTGGTGGCAG	0.627													7	14					0	0	0.000157383	0	0
FAM46B	115572	broad.mit.edu	37	1	27332474	27332474	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:27332474G>A	uc010ofj.1	-	2	1411	c.1239C>T	c.(1237-1239)CTC>CTT	p.L413L		NM_052943	NP_443175	Q96A09	FA46B_HUMAN	hypothetical protein LOC115572	413										central_nervous_system(1)	1		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;7.71e-51)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|STAD - Stomach adenocarcinoma(196;0.00114)|READ - Rectum adenocarcinoma(331;0.0419)		CGTGAGCCAGGAGAGGTTGCA	0.662													37	46					0	0	0.000374591	0	0
MECR	51102	broad.mit.edu	37	1	29542534	29542534	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:29542534G>A	uc001brq.1	-	3	425	c.389C>T	c.(388-390)CCA>CTA	p.P130L	MECR_uc001brp.1_Missense_Mutation_p.P54L|MECR_uc001brr.1_Missense_Mutation_p.P54L|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Missense_Mutation_p.P54L|MECR_uc010ofz.1_Missense_Mutation_p.P130L	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	130					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		AGCATTTGCTGGAATCACCCA	0.547													44	43					0	0	0.000680045	0	0
TINAGL1	64129	broad.mit.edu	37	1	32043041	32043041	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:32043041C>T	uc001bta.2	+	2	418	c.292C>T	c.(292-294)CCT>TCT	p.P98S	TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Missense_Mutation_p.P98S|TINAGL1_uc010ogj.1_Missense_Mutation_p.P98S|TINAGL1_uc010ogk.1_Missense_Mutation_p.P98S	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1	98	SMB.				endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		CGTGCCACCCCCTTTTCCCCC	0.602													43	48					0	0	0.000781405	0	0
TXLNA	200081	broad.mit.edu	37	1	32653693	32653693	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:32653693C>A	uc001bui.2	+	5	801	c.736C>A	c.(736-738)CGT>AGT	p.R246S	TXLNA_uc001buj.2_Missense_Mutation_p.R246S	NM_175852	NP_787048	P40222	TXLNA_HUMAN	taxilin	246	Potential.				cell proliferation|exocytosis	cytoplasm|extracellular region	cytokine activity|high molecular weight B cell growth factor receptor binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GAGCCTATGCCGTGAGCTGCA	0.587													7	4					0.000157383	0.00172436	0.000157383	1	0
LCK	3932	broad.mit.edu	37	1	32745524	32745525	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:32745524_32745525CC>TT	uc001bux.2	+	11	1262_1263	c.1124_1125CC>TT	c.(1123-1125)ACC>ATT	p.T375I	LCK_uc001buy.2_Missense_Mutation_p.T375I|LCK_uc001buz.2_Missense_Mutation_p.T405I|LCK_uc010ohc.1_Missense_Mutation_p.T419I|LCK_uc001bva.2_Missense_Mutation_p.T382I	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	375	Protein kinase.			T -> A (in Ref. 14; CAA28165).	activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	GTGTCTGACACCCTGAGCTGCA	0.52			T	TRB@	T-ALL								43	52					0	0	6.4e-05	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046823	42046823	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:42046823G>A	uc001cgz.3	-	4	4859	c.3646C>T	c.(3646-3648)CCC>TCC	p.P1216S	HIVEP3_uc001cha.3_Missense_Mutation_p.P1216S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1216					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGCCTGAAGGGGATGTTGGCT	0.582													28	25					0	0	0.00106085	0	0
ELOVL1	64834	broad.mit.edu	37	1	43829641	43829641	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:43829641G>A	uc001ciz.2	-	9	1029	c.786C>T	c.(784-786)CCC>CCT	p.P262P	ELOVL1_uc001cja.2_Silent_p.P262P|ELOVL1_uc001cjb.2_Silent_p.P262P|ELOVL1_uc001cjc.2_RNA|ELOVL1_uc010okh.1_Silent_p.P235P	NM_022821	NP_073732	Q9BW60	ELOV1_HUMAN	elongation of very long chain fatty acids-like	262					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|sphingolipid biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	fatty acid elongase activity|protein binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAAGTGCACGGGGCAGCCGCT	0.517													33	53					0	0	0.00111076	0	0
ALG6	29929	broad.mit.edu	37	1	63894447	63894447	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:63894447T>A	uc010oow.1	+	13	1407	c.1102T>A	c.(1102-1104)TGG>AGG	p.W368R	ALG6_uc001daz.2_RNA|ALG6_uc009waj.2_RNA|ALG6_uc010oox.1_Missense_Mutation_p.W115R	NM_013339	NP_037471	Q9Y672	ALG6_HUMAN	dolichyl pyrophosphate Man9GlcNAc2	368	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity				0						TATGTCTACTTGGTTTTTACT	0.244													54	50					0	0	0.000781405	0	0
SLC44A5	204962	broad.mit.edu	37	1	75699690	75699690	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:75699690C>T	uc001dgu.2	-	12	978	c.834G>A	c.(832-834)GTG>GTA	p.V278V	SLC44A5_uc001dgt.2_Silent_p.V278V|SLC44A5_uc001dgs.2_Silent_p.V236V|SLC44A5_uc001dgr.2_Silent_p.V236V|SLC44A5_uc010oqz.1_Silent_p.V317V|SLC44A5_uc010ora.1_Silent_p.V272V|SLC44A5_uc010orb.1_Silent_p.V148V	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	278	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TAATTCCAATCACACCAATCA	0.378													14	0					0	0	0.000308642	0	0
MOV10	4343	broad.mit.edu	37	1	113241402	113241403	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:113241402_113241403GG>AA	uc001eck.2	+	17	2844_2845	c.2574_2575GG>AA	c.(2572-2577)AAGGAC>AAAAAC	p.D859N	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Missense_Mutation_p.D859N|MOV10_uc001ecm.2_Missense_Mutation_p.D799N	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	859					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		ATGACATCAAGGACTTGAAGGT	0.559													98	6					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458824	120458825	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:120458824_120458825CC>AA	uc001eik.2	-	34	6776_6777	c.6520_6521GG>TT	c.(6520-6522)GGG>TTG	p.G2174L		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2174	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTGTAAGATCCCAGGGGATGTA	0.5			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				13	610					0	0	6.4e-05	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244													4	67					0	0	0.00024832	0	0
VPS72	6944	broad.mit.edu	37	1	151156834	151156835	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:151156834_151156835CG>AT	uc001exe.1	-	4	563_564	c.520_521CG>AT	c.(520-522)CGG>ATG	p.R174M	VPS72_uc001exf.1_Missense_Mutation_p.R174M	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	174	Potential.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTTGGCCTCCCGGAGCAGTTCC	0.545													7	229					0	0	6.4e-05	0	0
FCRL5	83416	broad.mit.edu	37	1	157497648	157497648	+	Silent	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:157497648G>C	uc001fqu.2	-	9	1877	c.1719C>G	c.(1717-1719)CCC>CCG	p.P573P	FCRL5_uc009wsm.2_Silent_p.P573P|FCRL5_uc010phv.1_Silent_p.P573P|FCRL5_uc010phw.1_Silent_p.P488P	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	573	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCTGGGCCCTGGGAACCCTGA	0.512													3	68					0	0	6.4e-05	0	0
FCRL3	115352	broad.mit.edu	37	1	157667100	157667100	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:157667100T>C	uc001frb.2	-	6	966	c.674A>G	c.(673-675)CAA>CGA	p.Q225R	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.Q225R|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.Q225R	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	225	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GAGGGAGAATTGCAGCTGGAC	0.592													32	31					0	0	0.00058488	0	0
KIRREL	55243	broad.mit.edu	37	1	158047896	158047897	+	Silent	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:158047896_158047897CC>TT	uc001frn.3	+	3	722_723	c.318_319CC>TT	c.(316-321)GCCCTG>GCTTTG	p.106_107AL>AL	KIRREL_uc010pib.1_Intron|KIRREL_uc009wsq.2_Silent_p.45_46AL>AL	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	106_107	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					CGGAGGCCGCCCTGCGCTCTCG	0.619													43	51					0	0	6.4e-05	0	0
FCRL6	343413	broad.mit.edu	37	1	159779306	159779306	+	Missense_Mutation	SNP	C	T	T	rs140713881		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:159779306C>T	uc001fud.3	+	5	761	c.719C>T	c.(718-720)TCC>TTC	p.S240F	FCRL6_uc001fuc.2_Missense_Mutation_p.S247F|FCRL6_uc009wsz.1_Missense_Mutation_p.S145F|FCRL6_uc009wta.2_Missense_Mutation_p.S240F	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	240	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane		p.S240F(1)		ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					ATCCTGTATTCCTTCTACCTT	0.592													32	23					0	0	0.000409698	0	0
IGSF9	57549	broad.mit.edu	37	1	159900130	159900130	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:159900130C>T	uc001fur.2	-	15	2111	c.1913G>A	c.(1912-1914)GGG>GAG	p.G638E	IGSF9_uc001fuq.2_Missense_Mutation_p.G622E|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	638	Fibronectin type-III 2.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGGAGTACCCCCCGGGGTGT	0.672													54	51					0	0	0.000781405	0	0
NR1I3	9970	broad.mit.edu	37	1	161201155	161201155	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:161201155C>G	uc001fzx.2	-	6	861	c.658G>C	c.(658-660)GGG>CGG	p.G220R	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.G220R|NR1I3_uc001fzg.2_Missense_Mutation_p.G191R|NR1I3_uc001fzh.2_Missense_Mutation_p.G191R|NR1I3_uc001fzi.2_Missense_Mutation_p.G191R|NR1I3_uc001fzj.2_Missense_Mutation_p.G191R|NR1I3_uc001fzk.2_Missense_Mutation_p.G191R|NR1I3_uc001fzl.2_Missense_Mutation_p.G191R|NR1I3_uc001fzm.2_Missense_Mutation_p.G145R|NR1I3_uc001fzn.2_Missense_Mutation_p.G53R|NR1I3_uc009wug.2_Missense_Mutation_p.G53R|NR1I3_uc001fzp.2_Missense_Mutation_p.G220R|NR1I3_uc001fzo.2_Missense_Mutation_p.G53R|NR1I3_uc001fzq.2_Silent_p.A116A|NR1I3_uc001fzr.2_Silent_p.A116A|NR1I3_uc001fzs.2_Missense_Mutation_p.G53R|NR1I3_uc001fzt.2_Missense_Mutation_p.G53R|NR1I3_uc001fzu.2_Silent_p.A87A|NR1I3_uc001fzv.2_Silent_p.A87A|NR1I3_uc001fzw.2_Missense_Mutation_p.G220R|NR1I3_uc001fzy.2_Missense_Mutation_p.G220R|NR1I3_uc001fzz.2_Missense_Mutation_p.G220R|NR1I3_uc001gaa.2_Missense_Mutation_p.G220R|NR1I3_uc001gab.2_Missense_Mutation_p.G220R|NR1I3_uc001gac.2_Missense_Mutation_p.G191R|NR1I3_uc010pkm.1_Missense_Mutation_p.G191R|NR1I3_uc010pkn.1_Missense_Mutation_p.G220R	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	220					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CGAAGAGGCCCGCAGAGGAAG	0.507													3	88					0	0	0.000602214	0	0
PBX1	5087	broad.mit.edu	37	1	164769004	164769004	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:164769004C>T	uc001gct.2	+	4	837	c.579C>T	c.(577-579)TCC>TCT	p.S193S	PBX1_uc010pku.1_Silent_p.S193S|PBX1_uc010pkv.1_Silent_p.S110S|PBX1_uc001gcs.2_Silent_p.S193S|PBX1_uc010pkw.1_Silent_p.S83S	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	193					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GGCCCATCTCCCCAAAGGAGA	0.572			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								32	42					0	0	0.000409698	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552668	173552668	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:173552668C>T	uc001giz.2	-	6	1040	c.617G>A	c.(616-618)AGA>AAA	p.R206K	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	206					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AAAGTGGATTCTGTTGCCCCG	0.274													29	27					0	0	0.000227799	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659412	176659412	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:176659412G>A	uc001gkz.2	+	5	3441	c.2277G>A	c.(2275-2277)AAG>AAA	p.K759K	PAPPA2_uc001gky.1_Silent_p.K759K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	759					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACCCCTGCAAGGAGACAGTGC	0.557													35	53					0	0	0.000228196	0	0
Unknown	0	broad.mit.edu	37	1	179556516	179556516	+	RNA	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:179556516C>T	uc001gmt.2	-	1		c.39G>A								DQ571986																		ACCGTCTGTTCTGCACAGGTG	0.532													20	24					0	0	0.000958276	0	0
KIAA1614	57710	broad.mit.edu	37	1	180905588	180905588	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:180905588G>A	uc001gok.2	+	5	2610	c.2543G>A	c.(2542-2544)AGA>AAA	p.R848K	KIAA1614_uc001gol.1_Missense_Mutation_p.R469K|KIAA1614_uc001gom.1_Intron	NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	848										ovary(3)|skin(1)	4						CCTCCTTCAAGAAGCGCGGTT	0.637													18	14					0	0	0.00074312	0	0
CACNA1E	777	broad.mit.edu	37	1	181740488	181740488	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:181740488G>A	uc001gow.2	+	36	5106	c.4941G>A	c.(4939-4941)CGG>CGA	p.R1647R	CACNA1E_uc009wxs.2_Silent_p.R1535R|CACNA1E_uc001gox.1_Silent_p.R873R|CACNA1E_uc009wxt.2_Silent_p.R873R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1647	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACAACTTCCGGAGTTTCTTTG	0.463													4	9					0	0	0.000602214	0	0
CFHR5	81494	broad.mit.edu	37	1	196953220	196953220	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:196953220C>T	uc001gts.3	+	3	511	c.383C>T	c.(382-384)TCG>TTG	p.S128L		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	128	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAAAACATTTCGTGTGTAGAA	0.378													17	29					0	0	0.000132079	0	0
F13B	2165	broad.mit.edu	37	1	197030188	197030188	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:197030188C>T	uc001gtt.1	-	4	513	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	157	Sushi 3.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTATATAATTCAGGAGCCAAA	0.264													9	14					0	0	0.000274275	0	0
CRB1	23418	broad.mit.edu	37	1	197398614	197398614	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:197398614C>T	uc001gtz.2	+	8	2847	c.2712C>T	c.(2710-2712)TCC>TCT	p.S904S	CRB1_uc010poz.1_Silent_p.S880S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.S792S|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Silent_p.S385S|CRB1_uc001gub.1_Silent_p.S553S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	904	Extracellular (Potential).|EGF-like 13.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTTGCCATTCCCGGTGGGATG	0.507													22	24					0	0	0.00047179	0	0
EPRS	2058	broad.mit.edu	37	1	220170519	220170519	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:220170519G>A	uc001hly.1	-	18	2617	c.2347C>T	c.(2347-2349)CAG>TAG	p.Q783*	EPRS_uc010puf.1_Nonsense_Mutation_p.Q534*|EPRS_uc001hlz.1_Nonsense_Mutation_p.Q790*	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	783	WHEP-TRS 1.|3 X 57 AA approximate repeats.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	GACAAAAGCTGTTTTACAGCT	0.393													40	39					0	0	0.000270559	0	0
C1orf58	148362	broad.mit.edu	37	1	222889067	222889067	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:222889067C>A	uc001hnq.1	+	2	421	c.26C>A	c.(25-27)CCA>CAA	p.P9Q	AIDA_uc001hno.2_5'Flank|AIDA_uc010pus.1_5'Flank|C1orf58_uc010put.1_Missense_Mutation_p.P9Q|C1orf58_uc010puu.1_Missense_Mutation_p.P9Q|C1orf58_uc010puv.1_Missense_Mutation_p.P9Q	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	9						membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		CATAGGAACCCATTAAAAGCC	0.299													12	597					0.000422831	0.00462397	0.000422831	1	0
DISP1	84976	broad.mit.edu	37	1	223116528	223116529	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:223116528_223116529CG>AT	uc001hnu.1	+	2	510_511	c.363_364CG>AT	c.(361-366)TCCGAG>TCATAG	p.E122*		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	122					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AGCCACACTCCGAGTATTCTGC	0.545													18	805					0	0	6.4e-05	0	0
RYR2	6262	broad.mit.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:237947421G>A	uc001hyl.1	+	90	12529	c.12409G>A	c.(12409-12411)GAA>AAA	p.E4137K	RYR2_uc010pya.1_Missense_Mutation_p.E552K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4137					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGCCGCATCGAAATCATGGG	0.512													39	34					0	0	0.000228196	0	0
AHCTF1	25909	broad.mit.edu	37	1	247065900	247065900	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:247065900A>T	uc001ibu.1	-	7	1051	c.1044T>A	c.(1042-1044)AAT>AAA	p.N348K	AHCTF1_uc001ibv.1_Missense_Mutation_p.N357K	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	348	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			ACAATTTGGTATTACTCGTCT	0.423													75	93					0	0	0.000781405	0	0
OR2T33	391195	broad.mit.edu	37	1	248436262	248436262	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:248436262G>A	uc010pzi.1	-	1	855	c.855C>T	c.(853-855)CCC>CCT	p.P285P		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGTAGATGAGGGGGTTTAGTA	0.473													51	68					0	0	0.000781405	0	0
ZNF672	79894	broad.mit.edu	37	1	249142360	249142360	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr1:249142360C>T	uc001iex.2	+	4	1582	c.887C>T	c.(886-888)TCC>TTC	p.S296F		NM_024836	NP_079112	Q499Z4	ZN672_HUMAN	zinc finger protein 672	296	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GGGCAGCGCTCCGACCTGGTG	0.697													4	5					0	0	0.00024832	0	0
UPF2	26019	broad.mit.edu	37	10	12071484	12071485	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:12071484_12071485CC>AA	uc001ila.2	-	2	878_879	c.404_405GG>TT	c.(403-405)TGG>TTT	p.W135F	UPF2_uc001ilb.2_Missense_Mutation_p.W135F|UPF2_uc001ilc.2_Missense_Mutation_p.W135F|UPF2_uc009xiz.1_Missense_Mutation_p.W135F	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	135	Glu/Lys-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				GATGTCGTTCCCAAGCTTCCTG	0.371													16	622					0	0	6.4e-05	0	0
ITGA8	8516	broad.mit.edu	37	10	15639265	15639265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:15639265C>T	uc001ioc.1	-	21	2152	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	ITGA8_uc010qcb.1_Missense_Mutation_p.E703K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	718	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GTTACATTTTCCATCTTGTAC	0.448													61	47					0	0	0.000781405	0	0
GPR158	57512	broad.mit.edu	37	10	25464451	25464451	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:25464451C>T	uc001isj.2	+	1	162	c.102C>T	c.(100-102)TCC>TCT	p.S34S	LOC100128811_uc010qde.1_Intron	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	34	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGCCGGATTCCCCTCGAGAGA	0.687													46	32					0	0	0.000781405	0	0
PCDH15	65217	broad.mit.edu	37	10	55955511	55955511	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:55955511T>G	uc001jju.1	-	11	1632	c.1237A>C	c.(1237-1239)ACC>CCC	p.T413P	PCDH15_uc010qhq.1_Missense_Mutation_p.T418P|PCDH15_uc010qhr.1_Missense_Mutation_p.T413P|PCDH15_uc010qhs.1_Missense_Mutation_p.T418P|PCDH15_uc010qht.1_Missense_Mutation_p.T413P|PCDH15_uc010qhu.1_Missense_Mutation_p.T413P|PCDH15_uc001jjv.1_Missense_Mutation_p.T391P|PCDH15_uc010qhv.1_Missense_Mutation_p.T413P|PCDH15_uc010qhw.1_Missense_Mutation_p.T376P|PCDH15_uc010qhx.1_Missense_Mutation_p.T413P|PCDH15_uc010qhy.1_Missense_Mutation_p.T418P|PCDH15_uc010qhz.1_Missense_Mutation_p.T413P|PCDH15_uc010qia.1_Missense_Mutation_p.T391P|PCDH15_uc010qib.1_Missense_Mutation_p.T391P|PCDH15_uc001jjw.2_Missense_Mutation_p.T413P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	413	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCCGAAATGGTTGCTCCCACT	0.383										HNSCC(58;0.16)			30	1					0	0	0.000279167	0	0
ANK3	288	broad.mit.edu	37	10	62039364	62039364	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:62039364G>A	uc001jky.2	-	2	340	c.148C>T	c.(148-150)CGA>TGA	p.R50*	ANK3_uc010qih.1_Nonsense_Mutation_p.R33*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R44*|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	50					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGTCCAGCTCGAGCTGCTCTT	0.338													40	0					0	0	0.000319135	0	0
GRID1	2894	broad.mit.edu	37	10	87373170	87373171	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:87373170_87373171GG>AA	uc001kdl.1	-	15	2695_2696	c.2594_2595CC>TT	c.(2593-2595)CCC>CTT	p.P865L	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.P436L	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	865	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TGACCTCCTTGGGGGTCTCCTG	0.624										Multiple Myeloma(13;0.14)			10	0					0	0	6.4e-05	0	0
CYP2C8	1558	broad.mit.edu	37	10	96805651	96805651	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:96805651C>T	uc001kkb.2	-	6	972	c.877G>A	c.(877-879)GAT>AAT	p.D293N	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.D223N|CYP2C8_uc010qob.1_Missense_Mutation_p.D207N|CYP2C8_uc010qoc.1_Missense_Mutation_p.D191N|CYP2C8_uc010qod.1_Missense_Mutation_p.D207N	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	293					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	ACAAATAGATCAGCTACAGTG	0.433													26	1					0	0	0.000878237	0	0
SORCS3	22986	broad.mit.edu	37	10	107006990	107006990	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr10:107006990C>T	uc001kyi.1	+	22	3233	c.3006C>T	c.(3004-3006)TCC>TCT	p.S1002S	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1002	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATTTCCAGTCCCAGCTTTTAT	0.463													16	2					0	0	0.00074312	0	0
LRDD	55367	broad.mit.edu	37	11	802089	802089	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:802089T>C	uc001lro.1	-	7	1320	c.1178A>G	c.(1177-1179)GAT>GGT	p.D393G	LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.D393G|LRDD_uc001lrl.1_Missense_Mutation_p.D247G|LRDD_uc001lrm.1_Missense_Mutation_p.D80G|LRDD_uc001lrn.1_Missense_Mutation_p.D247G|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	393	ZU5 1.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CAGCCCCACATCCTGCCAGAC	0.687													2	3					0	0	6.4e-05	0	0
PGAP2	27315	broad.mit.edu	37	11	3845364	3845364	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:3845364C>T	uc001lys.2	+	4	726	c.600C>T	c.(598-600)TTC>TTT	p.F200F	PGAP2_uc001lyl.2_Silent_p.F157F|PGAP2_uc010qxw.1_Silent_p.F257F|PGAP2_uc010qxx.1_Missense_Mutation_p.H181Y|PGAP2_uc001lyp.3_Intron|PGAP2_uc010qxy.1_Silent_p.F196F|PGAP2_uc010qxz.1_Silent_p.F196F|PGAP2_uc001lyn.3_Missense_Mutation_p.H93Y|PGAP2_uc010qya.1_RNA|PGAP2_uc001lyr.2_Silent_p.F139F|PGAP2_uc010qyb.1_Missense_Mutation_p.H143Y|PGAP2_uc001lyt.2_5'UTR	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	200					GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						CCGAGGACTTCAGTGGGTGCC	0.607													18	0					0	0	0.000566183	0	0
OR51M1	390059	broad.mit.edu	37	11	5411355	5411355	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:5411355C>A	uc010qzc.1	+	1	727	c.727C>A	c.(727-729)CAA>AAA	p.Q243K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	243						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTGGCCTCCCAAGAGGAGCA	0.562													18	1					1.55795e-14	1.73991e-13	0.000229342	1	0
ST5	6764	broad.mit.edu	37	11	8732710	8732710	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:8732710G>A	uc001mgt.2	-	10	2427	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	ST5_uc009yfr.2_Silent_p.F327F|ST5_uc001mgu.2_Silent_p.F327F|ST5_uc001mgv.2_Silent_p.F747F|ST5_uc010rbq.1_RNA|ST5_uc010rbp.1_Silent_p.F260F|ST5_uc009yfs.2_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	747	UDENN.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		TGGCATCAGGGAAGCAAAACT	0.567													29	1					0	0	0.000692331	0	0
MRVI1	10335	broad.mit.edu	37	11	10647811	10647811	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:10647811G>A	uc010rcc.1	-	9	1456	c.1070C>T	c.(1069-1071)CCC>CTC	p.P357L	MRVI1_uc001miw.2_Missense_Mutation_p.P348L|MRVI1_uc010rcb.1_Missense_Mutation_p.P349L|MRVI1_uc009ygb.1_Missense_Mutation_p.P42L|MRVI1_uc001mix.2_Missense_Mutation_p.P42L|MRVI1_uc001miz.2_Missense_Mutation_p.P266L|MRVI1_uc009ygc.1_Missense_Mutation_p.P266L|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_Missense_Mutation_p.P42L|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	330					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GGAGGCTGGGGGACCCACTCC	0.697													7	0					0	0	8.12818e-05	0	0
PTPN5	84867	broad.mit.edu	37	11	18765556	18765556	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:18765556G>A	uc001mpd.2	-	4	719	c.288C>T	c.(286-288)TTC>TTT	p.F96F	PTPN5_uc001mpb.2_Silent_p.F96F|PTPN5_uc001mpc.2_Silent_p.F96F|PTPN5_uc001mpe.2_Silent_p.F96F|PTPN5_uc010rdj.1_Silent_p.F72F|PTPN5_uc001mpf.2_Silent_p.F72F|PTPN5_uc010rdk.1_Silent_p.F41F	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	96						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TCCTTACCAGGAACTGTGAGG	0.652													32	1					0	0	0.000953801	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136898	40136898	+	Nonsense_Mutation	SNP	C	T	T	rs151083424		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:40136898C>T	uc001mxa.1	-	2	2909	c.945G>A	c.(943-945)TGG>TGA	p.W315*	LRRC4C_uc001mxc.1_Nonsense_Mutation_p.W311*|LRRC4C_uc001mxd.1_Nonsense_Mutation_p.W311*|LRRC4C_uc001mxb.1_Nonsense_Mutation_p.W311*	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	315	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding	p.W315*(1)		ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGTCTTTTATCCACCAGCTGA	0.493													15	1					0	0	0.000219431	0	0
PRDM11	56981	broad.mit.edu	37	11	45245971	45245971	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:45245971G>A	uc001myo.2	+	8	1297	c.1048G>A	c.(1048-1050)GCG>ACG	p.A350T		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	350										upper_aerodigestive_tract(1)	1						ACTGGAATCTGCGAAGGTGGA	0.507													88	4					0	0	0.000781405	0	0
OR4A5	81318	broad.mit.edu	37	11	51412124	51412124	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:51412124G>A	uc001nhi.1	-	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACCTTGGAAGGAAATAGTCTT	0.438													8	10					0	0	0.000157383	0	0
OR4C16	219428	broad.mit.edu	37	11	55339945	55339945	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:55339945C>T	uc010rih.1	+	1	342	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TCATCCTCATCCTCACGGCTG	0.507													61	64					0	0	0.000781405	0	0
OR5D14	219436	broad.mit.edu	37	11	55563092	55563092	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:55563092G>A	uc010rim.1	+	1	61	c.61G>A	c.(61-63)GAT>AAT	p.D21N		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				AGGTTTCACAGATTACCCAAA	0.393													22	21					0	0	0.000295444	0	0
OR5D18	219438	broad.mit.edu	37	11	55587727	55587727	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:55587727G>A	uc010rin.1	+	1	622	c.622G>A	c.(622-624)GAA>AAA	p.E208K		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CACCTTTAATGAAATCAGCAC	0.448													26	33					0	0	0.000878237	0	0
APLNR	187	broad.mit.edu	37	11	57003458	57003458	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:57003458C>T	uc001njo.2	-	1	1470	c.1021G>A	c.(1021-1023)GAG>AAG	p.E341K	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	341	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						GCTGACTTCTCCCCACTGCTG	0.637													13	20					0	0	0.000151284	0	0
OR6Q1	219952	broad.mit.edu	37	11	57799260	57799260	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:57799260C>T	uc010rjz.1	+	1	836	c.836C>T	c.(835-837)TCT>TTT	p.S279F	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				AAGGTGGTATCTGTCTTCTAC	0.483													79	88					0	0	0.000781405	0	0
FADS3	3995	broad.mit.edu	37	11	61643392	61643392	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:61643392G>A	uc001nsm.2	-	11	1370	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	FADS3_uc001nsn.2_Missense_Mutation_p.S291L	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	406	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						GGCACACAGCGACTTGACCAG	0.647													38	43					0	0	0.000509022	0	0
INTS5	80789	broad.mit.edu	37	11	62415914	62415914	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:62415914G>A	uc001nud.2	-	2	1691	c.1638C>T	c.(1636-1638)CTC>CTT	p.L546L	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	546	Helical; (Potential).				snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						GGAGGCCAGAGAGGCTGACCA	0.622													29	40					0	0	0.000409698	0	0
CCDC88B	283234	broad.mit.edu	37	11	64120877	64120877	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:64120877G>A	uc001nzy.2	+	22	3786	c.3742G>A	c.(3742-3744)GAA>AAA	p.E1248K	CCDC88B_uc009ypo.1_Missense_Mutation_p.E1245K|CCDC88B_uc001oaa.2_Missense_Mutation_p.E400K|CCDC88B_uc001oab.1_Missense_Mutation_p.E79K|CCDC88B_uc001oac.2_5'UTR	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1248	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCTGCTGGCTGAAGTTCAGGC	0.657													14	24					0	0	0.000308642	0	0
RELA	5970	broad.mit.edu	37	11	65427250	65427250	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:65427250C>T	uc001ofg.2	-	6	586	c.446G>A	c.(445-447)CGT>CAT	p.R149H	RELA_uc001ofh.2_Missense_Mutation_p.R146H|RELA_uc010ron.1_Missense_Mutation_p.R160H|RELA_uc009yqr.2_Missense_Mutation_p.R96H|RELA_uc001ofe.2_Missense_Mutation_p.R149H|RELA_uc001off.2_Missense_Mutation_p.R149H|RELA_uc009yqs.1_RNA	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene	149	RHD.				anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						GTAGTCCCCACGCTGCTCTTC	0.612													22	25					0	0	0.000375601	0	0
FCHSD2	9873	broad.mit.edu	37	11	72579046	72579047	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:72579046_72579047CG>AT	uc009ytl.2	-	13	1392_1393	c.1171_1172CG>AT	c.(1171-1173)CGG>ATG	p.R391M	FCHSD2_uc010rrg.1_Missense_Mutation_p.R255M|FCHSD2_uc001oth.3_Missense_Mutation_p.R335M|FCHSD2_uc001oti.2_Missense_Mutation_p.R350M	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	391	Potential.						protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			CAGGTCCAACCGGGCTTCAGCT	0.361													10	503					0	0	6.4e-05	0	0
CCDC81	60494	broad.mit.edu	37	11	86123499	86123500	+	Missense_Mutation	DNP	GG	AA	AA	rs143484591		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:86123499_86123500GG>AA	uc001pbx.1	+	11	1717_1718	c.1289_1290GG>AA	c.(1288-1290)CGG>CAA	p.R430Q	CCDC81_uc001pbw.1_Missense_Mutation_p.R340Q|CCDC81_uc010rtq.1_Missense_Mutation_p.R213Q|CCDC81_uc001pby.1_Missense_Mutation_p.R165Q	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	430										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				GAATATTCCCGGAGTCTCCTGA	0.421													53	59					0	0	6.4e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92087074	92087074	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:92087074C>A	uc001pdj.3	+	1	1813	c.1796C>A	c.(1795-1797)GCA>GAA	p.A599E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	599	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CACATCACAGCAGTCTCAGCG	0.393										TCGA Ovarian(4;0.039)			91	113					1.32003e-40	1.49148e-39	0.000781405	1	0
FOLR4	390243	broad.mit.edu	37	11	94039810	94039810	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:94039810C>T	uc010rud.1	+	2	270	c.270C>T	c.(268-270)TTC>TTT	p.F90F		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	90						extracellular region	folic acid binding|receptor activity			ovary(1)	1						GGAAGCACTTCATCCAGGCTA	0.572													50	52					0	0	0.000781405	0	0
TRAPPC4	51399	broad.mit.edu	37	11	118890879	118890879	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:118890879C>G	uc010ryo.1	+	3	635	c.370C>G	c.(370-372)CAG>GAG	p.Q124E	RPS25_uc001pun.2_5'Flank|TRAPPC4_uc010ryn.1_Missense_Mutation_p.Q124E|TRAPPC4_uc010ryp.1_Intron|TRAPPC4_uc001pup.2_Intron|TRAPPC4_uc010ryq.1_Missense_Mutation_p.Q124E	NM_016146	NP_057230	Q9Y296	TPPC4_HUMAN	trafficking protein particle complex 4	124					dendrite development|ER to Golgi vesicle-mediated transport	cis-Golgi network|dendrite|endoplasmic reticulum|Golgi stack|synaptic vesicle	protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_neural(223;0.224)|all_hematologic(192;0.243)		BRCA - Breast invasive adenocarcinoma(274;7.58e-05)		CATCGGCTCCCAGCTGTCTCC	0.502													3	24					0	0	6.4e-05	0	0
PKNOX2	63876	broad.mit.edu	37	11	125267910	125267910	+	Silent	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:125267910A>G	uc001qbu.2	+	7	854	c.540A>G	c.(538-540)CTA>CTG	p.L180L	PKNOX2_uc010saz.1_Silent_p.L151L|PKNOX2_uc010sba.1_Silent_p.L151L|PKNOX2_uc010sbb.1_Silent_p.L116L	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	180						nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		GGAATGATCTAGGGGGGCCCT	0.532													3	48					0	0	6.4e-05	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130332555	130332555	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:130332555C>T	uc010scd.1	+	4	1422	c.1422C>T	c.(1420-1422)GCC>GCT	p.A474A		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	474	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CCGGGAAGGCCAAGGGACAGA	0.642													37	49					0	0	0.00058488	0	0
IGSF9B	22997	broad.mit.edu	37	11	133795732	133795732	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:133795732G>C	uc001qgx.3	-	14	2167	c.1936C>G	c.(1936-1938)CGC>GGC	p.R646G	IGSF9B_uc001qgy.1_Missense_Mutation_p.R488G	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	646	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		ATGATGTAGCGGTCGATGGGA	0.607													9	17					0	0	0.000673444	0	0
KCNA5	3741	broad.mit.edu	37	12	5154211	5154211	+	Missense_Mutation	SNP	G	A	A	rs148708451	byFrequency	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:5154211G>A	uc001qni.2	+	1	1127	c.898G>A	c.(898-900)GGC>AGC	p.G300S		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	300			G -> S (in a breast cancer sample; somatic mutation).			Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity	p.G300S(2)		ovary(2)|breast(2)	4						TGGGGCCAACGGCAGCGGGGT	0.706													24	32					0	0	0.000375601	0	0
C3AR1	719	broad.mit.edu	37	12	8211871	8211871	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:8211871G>A	uc001qtv.1	-	2	1003	c.911C>T	c.(910-912)TCC>TTC	p.S304F		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	304	Extracellular (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		CTCGTAGAAGGAATTGCTAGA	0.448													81	70					0	0	0.000781405	0	0
KLRD1	3824	broad.mit.edu	37	12	10462030	10462030	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:10462030G>A	uc001qxw.3	+	3	248	c.51G>A	c.(49-51)GGG>GGA	p.G17G	KLRD1_uc001qxx.3_Silent_p.G17G|KLRD1_uc001qxy.3_Intron|KLRD1_uc009zhh.2_Silent_p.G17G|KLRD1_uc009zhi.2_Silent_p.G17G|KLRD1_uc001qxz.3_Silent_p.G17G	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	17	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						GGACCTTAGGGATAATATGCC	0.373													44	73					0	0	0.000781405	0	0
LRP6	4040	broad.mit.edu	37	12	12356313	12356314	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:12356313_12356314CC>AA	uc001rah.3	-	3	612_613	c.470_471GG>TT	c.(469-471)TGG>TTT	p.W157F	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.W157F	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	157	Extracellular (Potential).|LDL-receptor class B 3.|Beta-propeller 1.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GCACTTCTCCCCAGTCTGTCCA	0.347													20	686					0	0	6.4e-05	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18716366	18716366	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:18716366C>T	uc001rdt.2	+	27	3829	c.3713C>T	c.(3712-3714)TCA>TTA	p.S1238L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S1279L|PIK3C2G_uc010sic.1_Missense_Mutation_p.S1057L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1238	PX.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ACAGAAAAATCATTTGAGCAG	0.408													21	14					0	0	0.000175454	0	0
CCDC91	55297	broad.mit.edu	37	12	28460621	28460621	+	Missense_Mutation	SNP	G	A	A	rs148160409		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:28460621G>A	uc001riq.2	+	5	531	c.515G>A	c.(514-516)GGC>GAC	p.G172D	CCDC91_uc001rio.2_Missense_Mutation_p.G142D|CCDC91_uc009zjk.2_RNA|CCDC91_uc001rip.1_Missense_Mutation_p.G172D|CCDC91_uc001rir.2_Missense_Mutation_p.G10D|CCDC91_uc009zjl.2_Missense_Mutation_p.G10D	NM_018318	NP_060788	Q7Z6B0	CCD91_HUMAN	GGA binding partner	172	Potential.				protein transport	Golgi apparatus|membrane				central_nervous_system(1)	1	Acute lymphoblastic leukemia(23;0.00718)|all_hematologic(23;0.0113)|Lung SC(9;0.184)					TTAGAAAAAGGCTTTCTAAAA	0.279													3	8					0	0	0.00024832	0	0
ANP32D	23519	broad.mit.edu	37	12	48866516	48866516	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:48866516C>T	uc010slt.1	+	1	69	c.69C>T	c.(67-69)TTC>TTT	p.F23F		NM_012404	NP_036536	O95626	AN32D_HUMAN	acidic nuclear phosphoprotein 32D	23	LRR 1.									ovary(1)|central_nervous_system(1)	2						AAGAACTTTTCCTGGACAACA	0.453													51	84					0	0	0.000781405	0	0
SPATS2	65244	broad.mit.edu	37	12	49918674	49918674	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:49918674C>T	uc001rud.2	+	13	2310	c.1321C>T	c.(1321-1323)CGG>TGG	p.R441W	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Missense_Mutation_p.R441W|SPATS2_uc001ruf.2_Missense_Mutation_p.R441W|SPATS2_uc001rug.2_Missense_Mutation_p.R441W	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	441						cytoplasm				breast(1)	1						CCAGCCACTTCGGGAGGTAAC	0.478													30	20					0	0	0.00058488	0	0
FMNL3	91010	broad.mit.edu	37	12	50043558	50043558	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:50043558G>T	uc001ruv.1	-	18	2385	c.2151C>A	c.(2149-2151)TTC>TTA	p.F717L	FMNL3_uc001ruw.1_Missense_Mutation_p.F666L|FMNL3_uc001rut.1_Missense_Mutation_p.F283L|FMNL3_uc001ruu.1_Missense_Mutation_p.F567L	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	717	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						CCACCTTGCTGAAGAGCAGCA	0.612													56	50					5.22555e-25	5.88129e-24	0.000781405	1	0
POU6F1	5463	broad.mit.edu	37	12	51586157	51586157	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:51586157G>A	uc001rxy.2	-	3	539	c.347C>T	c.(346-348)CCA>CTA	p.P116L	POU6F1_uc001rxz.2_Missense_Mutation_p.P116L|POU6F1_uc001rya.2_Missense_Mutation_p.P116L	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	116	Gln/Pro-rich.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCAGGTAATTGGGATAGGAGC	0.607													64	67					0	0	0.000781405	0	0
KRT4	3851	broad.mit.edu	37	12	53207706	53207706	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:53207706C>T	uc001saz.2	-	1	630	c.359G>A	c.(358-360)GGA>GAA	p.G120E		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	46						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCTGCCAAATCCCCCAGAAGA	0.602													89	80					0	0	0.000781405	0	0
KRT79	338785	broad.mit.edu	37	12	53227586	53227586	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:53227586G>A	uc001sbb.2	-	1	492	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	153	Rod.|Coil 1A.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TGAAGGAGGCGAACTTGTTGT	0.607													89	80					0	0	0.000781405	0	0
HOXC6	3223	broad.mit.edu	37	12	54422381	54422381	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:54422381C>T	uc001sev.2	+	1	188	c.76C>T	c.(76-78)CTC>TTC	p.L26F	HOXC6_uc001ses.2_5'UTR|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	26					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CAACGTCGCCCTCAATTCCAC	0.567													29	34					0	0	0.000184323	0	0
MMP19	4327	broad.mit.edu	37	12	56230895	56230896	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:56230895_56230896CC>TT	uc001sib.2	-	9	1572_1573	c.1451_1452GG>AA	c.(1450-1452)GGG>GAA	p.G484E	MMP19_uc001sia.2_Missense_Mutation_p.G198E|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_3'UTR	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	484					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GAGTGGTATTCCCACCTGATGG	0.505													104	123					0	0	6.4e-05	0	0
STAT6	6778	broad.mit.edu	37	12	57493118	57493118	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:57493118G>A	uc009zpe.2	-	16	2101	c.1850C>T	c.(1849-1851)CCC>CTC	p.P617L	STAT6_uc009zpf.2_Missense_Mutation_p.P617L|STAT6_uc001sna.2_Missense_Mutation_p.P617L|STAT6_uc010srb.1_Missense_Mutation_p.P507L|STAT6_uc010src.1_Missense_Mutation_p.P507L|STAT6_uc010srd.1_Missense_Mutation_p.P507L|STAT6_uc009zpg.2_Missense_Mutation_p.P666L	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	617	SH2.				regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						GGGCTTCTTGGGATAGAGATT	0.552													40	37					0	0	0.000509022	0	0
AGAP2	116986	broad.mit.edu	37	12	58121490	58121490	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:58121490G>A	uc001spq.2	-	16	2831	c.2831C>T	c.(2830-2832)TCA>TTA	p.S944L	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spp.2_Missense_Mutation_p.S943L|AGAP2_uc001spr.2_Missense_Mutation_p.S588L|LOC100130776_uc001sps.3_Missense_Mutation_p.E239K	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	944	Arf-GAP.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						CACGCAGATTGAATTCCCCTT	0.657													9	9					0	0	0.000673444	0	0
TMEM19	55266	broad.mit.edu	37	12	72090353	72090354	+	Splice_Site	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:72090353_72090354GG>AA	uc001sws.2	+	3	965	c.382_splice	c.e3+1	p.G128_splice	TMEM19_uc001swr.1_Splice_Site_p.G114_splice|TMEM19_uc009zru.1_Splice_Site	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19							integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		ATATAAGGAAGGTAAAATTATG	0.252													11	17					0	0	6.4e-05	0	0
PLXNC1	10154	broad.mit.edu	37	12	94634386	94634387	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:94634386_94634387CC>TT	uc001tdc.2	+	11	2495_2496	c.2246_2247CC>TT	c.(2245-2247)TCC>TTT	p.S749F		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	749	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GGATCCTTATCCTACATTGCTC	0.421													80	89					0	0	6.4e-05	0	0
SLC24A6	80024	broad.mit.edu	37	12	113745603	113745603	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:113745603G>A	uc001tvc.2	-	13	1514	c.1304C>T	c.(1303-1305)GCG>GTG	p.A435V	SLC24A6_uc001tuz.2_Missense_Mutation_p.A140V|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Missense_Mutation_p.A173V	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	435	Helical; Name=9; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						TGTGGCGGCCGCGTTGATCCA	0.622													19	26					0	0	0.000132079	0	0
NOS1	4842	broad.mit.edu	37	12	117724040	117724040	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:117724040C>T	uc001twm.1	-	6	1845	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	387					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTCACCTCTTCCAGCCTTTCC	0.532													21	23					0	0	0.000175454	0	0
PEBP1	5037	broad.mit.edu	37	12	118582479	118582479	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:118582479C>T	uc001twu.1	+	4	580	c.435C>T	c.(433-435)CAC>CAT	p.H145H	PEBP1_uc010szc.1_Intron	NM_002567	NP_002558	P30086	PEBP1_HUMAN	prostatic binding protein	145							ATP binding|phosphatidylethanolamine binding|serine-type endopeptidase inhibitor activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGGAGACCACCGTGGCAAAT	0.592								Direct_reversal_of_damage					25	20					0	0	0.000720815	0	0
CCDC60	160777	broad.mit.edu	37	12	119943060	119943060	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:119943060G>A	uc001txe.2	+	7	1300	c.835G>A	c.(835-837)GAC>AAC	p.D279N	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	279										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGACATTGAGGACAATGAGTC	0.522													57	75					0	0	0.000781405	0	0
CCDC64	92558	broad.mit.edu	37	12	120436384	120436384	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:120436384G>A	uc001txl.1	+	2	514	c.489G>A	c.(487-489)TGG>TGA	p.W163*	CCDC64_uc001txk.2_Nonsense_Mutation_p.W163*|CCDC64_uc009zwv.1_RNA	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	163	Potential.				Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGGGGAGTGGGAAGGCCGAG	0.463													32	46					0	0	0.000814825	0	0
MLXIP	22877	broad.mit.edu	37	12	122618089	122618089	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:122618089C>T	uc001ubq.2	+	9	1287	c.1287C>T	c.(1285-1287)CTC>CTT	p.L429L	MLXIP_uc001ubr.2_Silent_p.L180L|MLXIP_uc001ubs.1_Silent_p.L36L|MLXIP_uc001ubt.2_Silent_p.L36L	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	429	Transactivation domain.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		AGCCCTTCCTCCCTGTCTTCA	0.652													4	6					0	0	0.000602214	0	0
RIMBP2	23504	broad.mit.edu	37	12	130927162	130927162	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:130927162G>A	uc001uil.2	-	8	848	c.684C>T	c.(682-684)TTC>TTT	p.F228F	RIMBP2_uc001uim.2_Silent_p.F136F|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	228	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CAAAGTCCACGAAGTTGGAGG	0.602													28	27					0	0	0.000409698	0	0
EP400	57634	broad.mit.edu	37	12	132466717	132466717	+	Silent	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:132466717G>C	uc001ujn.2	+	4	1658	c.1623G>C	c.(1621-1623)GGG>GGC	p.G541G	EP400_uc001ujl.2_Silent_p.G540G|EP400_uc001ujm.2_Silent_p.G541G|EP400_uc001ujj.1_Silent_p.G504G|EP400_uc001ujk.2_Silent_p.G577G	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	577					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCTCCACGGGGCCTCCCGTGC	0.677													56	52					0	0	0.000781405	0	0
IFT88	8100	broad.mit.edu	37	13	21217681	21217681	+	Silent	SNP	T	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:21217681T>A	uc001unh.2	+	21	2193	c.1797T>A	c.(1795-1797)TCT>TCA	p.S599S	IFT88_uc001uni.2_Silent_p.S590S|IFT88_uc001unj.2_Silent_p.S589S|IFT88_uc010tcq.1_Silent_p.S570S	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	599	TPR 10.				cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		AAGTTTTATCTAAGCTAGGAG	0.353													38	35					0	0	0.00111076	0	0
SACS	26278	broad.mit.edu	37	13	23908832	23908832	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:23908832G>A	uc001uon.2	-	10	9772	c.9183C>T	c.(9181-9183)CTC>CTT	p.L3061L	SACS_uc001uoo.2_Silent_p.L2914L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3061					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTTCTAAAAGGAGATGTTTCA	0.343													20	33					0	0	0.000229342	0	0
RXFP2	122042	broad.mit.edu	37	13	32367085	32367085	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:32367085G>A	uc001utt.2	+	16	1717	c.1646G>A	c.(1645-1647)GGA>GAA	p.G549E	RXFP2_uc010aba.2_Missense_Mutation_p.G508E	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	549	Helical; Name=4; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TGGATGGCGGGATTTTTAATA	0.388													32	26					0	0	0.00058488	0	0
CCNA1	8900	broad.mit.edu	37	13	37011825	37011825	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:37011825G>A	uc001uvr.3	+	3	707	c.357G>A	c.(355-357)AAG>AAA	p.K119K	CCNA1_uc010teo.1_Silent_p.K75K|CCNA1_uc010abq.2_Silent_p.K75K|CCNA1_uc010abp.2_Silent_p.K75K|CCNA1_uc001uvs.3_Silent_p.K118K|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	119					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CAGCTGGAAAGAAAGCACTCC	0.488													39	40					0	0	0.00111076	0	0
ALG5	29880	broad.mit.edu	37	13	37559848	37559848	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:37559848G>A	uc001uvy.2	-	6	544	c.477C>T	c.(475-477)ATC>ATT	p.I159I	ALG5_uc010teq.1_Silent_p.I129I|ALG5_uc010ter.1_RNA	NM_013338	NP_037470	Q9Y673	ALG5_HUMAN	dolichyl-phosphate beta-glucosyltransferase	159	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		CTGCCATAAGGATCTTTTCTC	0.368													49	42					0	0	0.000781405	0	0
C13orf23	80209	broad.mit.edu	37	13	39587366	39587366	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:39587366G>A	uc001uwy.2	-	11	2896	c.2023C>T	c.(2023-2025)CCT>TCT	p.P675S	C13orf23_uc001uwz.2_Missense_Mutation_p.P653S	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	675	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GAGGAAAGAGGATTTGAACCA	0.433													47	54					0	0	0.000680045	0	0
COG3	83548	broad.mit.edu	37	13	46067544	46067545	+	Missense_Mutation	DNP	TT	GG	GG			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:46067544_46067545TT>GG	uc001vak.2	+	12	1351_1352	c.1250_1251TT>GG	c.(1249-1251)GTT>GGG	p.V417G	COG3_uc001vai.2_Missense_Mutation_p.V417G|COG3_uc001vaj.1_Missense_Mutation_p.V417G|COG3_uc010tfv.1_Missense_Mutation_p.V254G|COG3_uc010aci.2_Missense_Mutation_p.V193G	NM_031431	NP_113619	Q96JB2	COG3_HUMAN	component of golgi transport complex 3	417					ER to Golgi vesicle-mediated transport|intra-Golgi vesicle-mediated transport|intracellular protein transport|protein glycosylation|protein localization to organelle|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	cis-Golgi network|Golgi cisterna membrane|Golgi transport complex	protein binding|protein transporter activity			breast(1)|skin(1)	2		Lung NSC(96;0.000145)|Breast(56;0.000596)|Prostate(109;0.00438)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000124)		ATCATTCATGTTATTCACTTAG	0.342													63	92					0	0	6.4e-05	0	0
ATP7B	540	broad.mit.edu	37	13	52515323	52515323	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:52515323G>A	uc001vfw.2	-	16	3607	c.3450C>T	c.(3448-3450)AAC>AAT	p.N1150N	ATP7B_uc010adv.2_Silent_p.N720N|ATP7B_uc001vfx.2_Silent_p.N943N|ATP7B_uc001vfy.2_Silent_p.N1039N|ATP7B_uc010tgt.1_Silent_p.N1085N|ATP7B_uc010tgu.1_Silent_p.N1102N|ATP7B_uc010tgv.1_Silent_p.N1072N|ATP7B_uc001vfv.2_Silent_p.N422N|ATP7B_uc010tgs.1_Silent_p.N361N	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1150	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GCCACTCACGGTTTCCAATCA	0.473									Wilson_disease				43	51					0	0	0.000509022	0	0
PCDH9	5101	broad.mit.edu	37	13	66878990	66878990	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:66878990C>T	uc001vik.2	-	5	4203	c.3511G>A	c.(3511-3513)GAC>AAC	p.D1171N	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Missense_Mutation_p.D1137N|PCDH9_uc010thl.1_Missense_Mutation_p.D1129N	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1171	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		ACAAGCTTGTCCTTCTTCACC	0.502													14	16					0	0	0.000566183	0	0
TBC1D4	9882	broad.mit.edu	37	13	75863074	75863075	+	Missense_Mutation	DNP	AA	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:75863074_75863075AA>TT	uc001vjl.1	-	20	4005_4006	c.3658_3659TT>AA	c.(3658-3660)TTA>AAA	p.L1220K	TBC1D4_uc010tht.1_Missense_Mutation_p.L430K|TBC1D4_uc010thu.1_Missense_Mutation_p.L377K|TBC1D4_uc010aer.2_Missense_Mutation_p.L1212K|TBC1D4_uc010aes.2_Missense_Mutation_p.L1157K	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1220						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		CTTTACCTGTAATTTTTCTAGG	0.406													15	13					0	0	6.4e-05	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454754	84454754	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:84454754C>T	uc001vlk.2	-	1	1775	c.889G>A	c.(889-891)GAT>AAT	p.D297N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	297	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTGGCATGATCCTCTTGCCCA	0.557													25	0					0	0	0.000720815	0	0
DCT	1638	broad.mit.edu	37	13	95095723	95095723	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:95095723G>T	uc001vlv.3	-	7	1775	c.1348C>A	c.(1348-1350)CAA>AAA	p.Q450K	DCT_uc010afh.2_Missense_Mutation_p.Q483K	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	450	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		TAGCCAAGTTGGTCTGAGGTT	0.448													15	53					6.31663e-08	6.98694e-07	0.000308642	1	0
SLC15A1	6564	broad.mit.edu	37	13	99368162	99368162	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:99368162G>A	uc001vno.2	-	9	770	c.693C>T	c.(691-693)AAC>AAT	p.N231N		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	231	Cytoplasmic (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TACCCATGATGTTGCCCTGTG	0.453													47	74					0	0	0.000781405	0	0
F10	2159	broad.mit.edu	37	13	113801733	113801733	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr13:113801733G>A	uc001vsx.2	+	7	845	c.788G>A	c.(787-789)GGA>GAA	p.G263E	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.G263E|F10_uc001vsz.2_Missense_Mutation_p.G263E	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	263	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCTGTGGTGGAACCATTCTG	0.552													25	27					0	0	0.000586117	0	0
OR4N2	390429	broad.mit.edu	37	14	20295862	20295862	+	Silent	SNP	C	T	T	rs139052676	byFrequency	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:20295862C>T	uc010tkv.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGTGGACTTCCTCTCTGCGA	0.527													82	166					0	0	0.000781405	0	0
OR4N2	390429	broad.mit.edu	37	14	20296145	20296145	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:20296145G>A	uc010tkv.1	+	1	538	c.538G>A	c.(538-540)GAT>AAT	p.D180N		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTCTTCTGTGATGTCCCACA	0.542													55	173					0	0	0.000781405	0	0
OR4N5	390437	broad.mit.edu	37	14	20612573	20612573	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:20612573G>A	uc010tla.1	+	1	679	c.679G>A	c.(679-681)GAG>AAG	p.E227K		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCGTATAAGGGAGCACTCCTC	0.488													17	14					0	0	0.000566183	0	0
MRPL52	122704	broad.mit.edu	37	14	23299432	23299432	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:23299432C>T	uc001wgw.3	+	3	156	c.126C>T	c.(124-126)CCC>CCT	p.P42P	MRPL52_uc001wgx.3_Silent_p.P41P|MRPL52_uc001wgy.3_5'UTR|MRPL52_uc001wgz.3_5'UTR|MRPL52_uc001wha.3_5'UTR|MRPL52_uc001whb.3_Silent_p.P42P	NM_178336	NP_848026	Q86TS9	RM52_HUMAN	mitochondrial ribosomal protein L52 isoform a	42					translation	mitochondrial large ribosomal subunit	structural constituent of ribosome				0	all_cancers(95;9.47e-05)			GBM - Glioblastoma multiforme(265;0.00551)		GCTACGGGCCCCTTACCGAGC	0.607													50	68					0	0	0.000781405	0	0
GZMB	3002	broad.mit.edu	37	14	25100298	25100298	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:25100298C>T	uc001wps.2	-	5	789	c.723G>A	c.(721-723)AAG>AAA	p.K241K	GZMB_uc010ama.2_Silent_p.K229K|GZMB_uc010amb.2_RNA	NM_004131	NP_004122	P10144	GRAB_HUMAN	granzyme B precursor	241	Peptidase S1.				activation of pro-apoptotic gene products|cleavage of lamin|cytolysis|induction of apoptosis by intracellular signals	cytosol|immunological synapse|nucleus	protein binding|serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.028)		TCATGGTTTTCTTTATCCAGT	0.488													94	87					0	0	0.000781405	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724746	38724746	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:38724746C>T	uc001wum.1	-	1	829	c.482G>A	c.(481-483)CGA>CAA	p.R161Q		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	161	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CAGGTGGCATCGCATCTCCTT	0.577													26	23					0	0	0.000227799	0	0
FANCM	57697	broad.mit.edu	37	14	45645631	45645631	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:45645631G>A	uc001wwd.3	+	14	3773	c.3674G>A	c.(3673-3675)AGG>AAG	p.R1225K	FANCM_uc010anf.2_Missense_Mutation_p.R1199K|FANCM_uc001wwe.3_Missense_Mutation_p.R761K|FANCM_uc010ang.2_Missense_Mutation_p.R439K	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1225					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GATTGCTCTAGGGATTTATTT	0.348								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				23	32					0	0	0.00047179	0	0
MUDENG	55745	broad.mit.edu	37	14	57741132	57741132	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:57741132C>T	uc001xcv.2	+	2	672	c.245C>T	c.(244-246)TCC>TTC	p.S82F	MUDENG_uc001xcu.3_Missense_Mutation_p.S82F|MUDENG_uc010tri.1_Intron|MUDENG_uc010trj.1_5'UTR	NM_018229	NP_060699	Q9H0R1	MUDEN_HUMAN	Mu-2 related death-inducing protein	82					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex				ovary(1)	1						AATAAAACATCCATTTATGGA	0.393													28	32					0	0	0.000878237	0	0
ESR2	2100	broad.mit.edu	37	14	64727386	64727386	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:64727386C>T	uc001xha.1	-	5	1201	c.733G>A	c.(733-735)GCC>ACC	p.A245T	ESR2_uc001xgu.2_Missense_Mutation_p.A245T|ESR2_uc001xgv.2_Missense_Mutation_p.A245T|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.A245T|ESR2_uc001xgy.1_Missense_Mutation_p.A245T|ESR2_uc001xgz.1_Missense_Mutation_p.A245T|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.A245T|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	245	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	CTTCTCTTGGCCTTGCCGGCA	0.667													20	25					0	0	0.000175454	0	0
GPHN	10243	broad.mit.edu	37	14	67589024	67589024	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:67589024C>T	uc001xiy.2	+	16	2700	c.1579C>T	c.(1579-1581)CGT>TGT	p.R527C	GPHN_uc001xix.2_Missense_Mutation_p.R560C|GPHN_uc010tss.1_Missense_Mutation_p.R573C|GPHN_uc010tst.1_Missense_Mutation_p.R496C|GPHN_uc010tsu.1_Missense_Mutation_p.R450C	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	527	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		AGACAGCAATCGTTCAACTCT	0.388			T	MLL	AL								31	32					0	0	0.000184323	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713822	70713822	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:70713822C>T	uc010ttg.1	-	1	697	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NR_003951				SubName: Full=ADAM21-like protein;												0						TCTTCAAATTCCAACTGTTGG	0.443													22	15					0	0	0.000229342	0	0
LTBP2	4053	broad.mit.edu	37	14	75018965	75018965	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:75018965C>T	uc001xqa.2	-	6	1711	c.1324G>A	c.(1324-1326)GGG>AGG	p.G442R		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	442					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGCGGGACCCCCTCCCTGGA	0.687													15	13					0	0	0.000566183	0	0
ASPG	374569	broad.mit.edu	37	14	104570991	104570991	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:104570991C>T	uc001yoq.1	+	9	1029	c.969C>T	c.(967-969)TTC>TTT	p.F323F	ASPG_uc001yoo.1_Silent_p.F351F|ASPG_uc001yop.1_Silent_p.F323F|ASPG_uc001yor.1_Silent_p.F323F	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	323	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						TCTCAGGCTTCGACATGACAT	0.687													15	16					0	0	0.000219431	0	0
ADAM6	8755	broad.mit.edu	37	14	106926285	106926285	+	RNA	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr14:106926285C>T	uc010tyt.1	-	235		c.10270G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						GATGGTGAATCGGCCCTTCAC	0.493													100	118					0	0	0.000781405	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413944	22413944	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:22413944C>T	uc001yuf.2	+	1	243	c.243C>T	c.(241-243)GTC>GTT	p.V81V		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCCAGGTGGTCCTCATCATCC	0.507													35	197					0	0	0.00058488	0	0
C15orf23	90417	broad.mit.edu	37	15	40675139	40675139	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:40675139C>T	uc001zll.2	+	1	218	c.103C>T	c.(103-105)CTA>TTA	p.L35L	C15orf23_uc010ucp.1_Silent_p.L35L|C15orf23_uc001zlo.2_Silent_p.L35L|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	35						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		CCGGAAGTTTCTATTTGAAAC	0.602													36	54					0	0	0.000319135	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42115750	42115750	+	Missense_Mutation	SNP	C	T	T	rs148608964	by1000genomes	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:42115750C>T	uc001zok.3	+	30	4008	c.3722C>T	c.(3721-3723)CCG>CTG	p.P1241L	MAPKBP1_uc001zoj.3_Missense_Mutation_p.P1235L|MAPKBP1_uc010bcj.2_Missense_Mutation_p.P742L|MAPKBP1_uc010bci.2_Intron|MAPKBP1_uc010udb.1_Missense_Mutation_p.P1074L|MAPKBP1_uc010bck.2_Missense_Mutation_p.P452L|MAPKBP1_uc010bcl.2_Missense_Mutation_p.P742L	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	1241										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GATGGCCGTCCGTCTCGGCCT	0.622													29	21					0	0	0.000409698	0	0
SPTBN5	51332	broad.mit.edu	37	15	42149846	42149846	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:42149846C>T	uc001zos.2	-	50	8517	c.8184G>A	c.(8182-8184)GAG>GAA	p.E2728E		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2763	Spectrin 24.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CTCCCAGCTCCTCCAGTCGCT	0.632													6	5					0	0	3.59834e-05	0	0
MAP1A	4130	broad.mit.edu	37	15	43819247	43819247	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:43819247C>A	uc001zrt.2	+	4	6043	c.5576C>A	c.(5575-5577)CCA>CAA	p.P1859Q		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1859						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCCCTCTCCCCAGCTCCTGGT	0.627													16	6					2.23348e-06	2.46109e-05	0.000422831	1	0
TLN2	83660	broad.mit.edu	37	15	63089500	63089500	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:63089500C>A	uc002alb.3	+	45	6133	c.6133C>A	c.(6133-6135)CTG>ATG	p.L2045M	TLN2_uc002alc.3_Missense_Mutation_p.L438M	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2045					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TCCTGACAAGCTGGCCCAGGC	0.627													41	54					6.21074e-16	6.94954e-15	0.000589545	1	0
TLN2	83660	broad.mit.edu	37	15	63131062	63131062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:63131062G>A	uc002alb.3	+	55	7382	c.7382G>A	c.(7381-7383)GGA>GAA	p.G2461E	TLN2_uc002alc.3_Missense_Mutation_p.G854E|TLN2_uc010uic.1_Missense_Mutation_p.G77E	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2461	I/LWEQ.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CAGGCGGCAGGAAATGCTGTG	0.448													40	47					0	0	0.000374591	0	0
HERC1	8925	broad.mit.edu	37	15	63932498	63932498	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:63932498G>A	uc002amp.2	-	61	11902	c.11754C>T	c.(11752-11754)TCC>TCT	p.S3918S		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3918					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TTGGATTCCAGGATGCAGGGT	0.507													67	69					0	0	0.000781405	0	0
NR2E3	10002	broad.mit.edu	37	15	72104815	72104815	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:72104815C>T	uc002ati.2	+	5	901	c.711C>T	c.(709-711)AAC>AAT	p.N237N	NR2E3_uc002ath.1_Silent_p.N237N	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	237					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GGGCCAAGAACCTGCCTGTGT	0.647													11	17					0	0	0.000219431	0	0
IREB2	3658	broad.mit.edu	37	15	78757601	78757601	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:78757601C>T	uc002bdr.2	+	4	443	c.281C>T	c.(280-282)CCA>CTA	p.P94L	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.P94L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	94							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AGTGGAATACCAGCAATGGTG	0.338													21	25					0	0	0.000295444	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79064071	79064071	+	Silent	SNP	C	G	G	rs149694045	by1000genomes	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:79064071C>G	uc002bej.3	-	15	2443	c.2232G>C	c.(2230-2232)CCG>CCC	p.P744P	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Silent_p.P744P	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	744	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						AGTACTTCTCCGGGTCCTCGC	0.627													30	15					0	0	0.000491102	0	0
IL16	3603	broad.mit.edu	37	15	81572043	81572043	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:81572043G>A	uc002bgh.3	+	8	1385	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.E337K|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.E379K|IL16_uc002bgg.2_Missense_Mutation_p.E337K|IL16_uc002bgi.1_5'UTR	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	337	Interaction with GRIN2A.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						CTTCGCCTTGGAAAGCCCCTC	0.607													15	16					0	0	0.00074312	0	0
CPEB1	64506	broad.mit.edu	37	15	83224663	83224663	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:83224663G>A	uc002bit.2	-	5	1133	c.996C>T	c.(994-996)CCC>CCT	p.P332P	CPEB1_uc002biq.2_Silent_p.P197P|CPEB1_uc002bir.2_Silent_p.P197P|CPEB1_uc002bis.2_Silent_p.P197P|CPEB1_uc010uod.1_Silent_p.P46P|CPEB1_uc010uoe.1_Silent_p.P275P|CPEB1_uc002biu.2_Silent_p.P299P|CPEB1_uc010uof.1_Silent_p.P197P|CPEB1_uc002biv.2_Silent_p.P272P|CPEB1_uc002bip.2_Silent_p.P46P	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	272					mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			CTATGCTGAAGGGGTCTTTGG	0.587													26	25					0	0	0.000878237	0	0
CRTC3	64784	broad.mit.edu	37	15	91169053	91169054	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:91169053_91169054GG>TT	uc002bpp.2	+	10	901_902	c.795_796GG>TT	c.(793-798)TTGGGG>TTTTGG	p.265_266LG>FW	CRTC3_uc002bpo.2_Missense_Mutation_p.265_266LG>FW	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	265_266					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CACCCTTCTTGGGGACCTTGAA	0.485			T	MAML2	salivary gland mucoepidermoid								10	335					0	0	6.4e-05	0	0
BLM	641	broad.mit.edu	37	15	91303999	91304000	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:91303999_91304000GG>TT	uc002bpr.2	+	7	1493_1494	c.1396_1397GG>TT	c.(1396-1398)GGG>TTG	p.G466L	BLM_uc010uqh.1_Missense_Mutation_p.G466L|BLM_uc010uqi.1_Missense_Mutation_p.G91L|BLM_uc010bnx.2_Missense_Mutation_p.G466L|BLM_uc002bps.1_Missense_Mutation_p.G28L	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	466					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TGTTTCTCCTGGGGACTGTTTA	0.436			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				11	494					0	0	6.4e-05	0	0
PCSK6	5046	broad.mit.edu	37	15	101983852	101983852	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:101983852T>C	uc002bwy.2	-	3	625	c.311A>G	c.(310-312)GAA>GGA	p.E104G	PCSK6_uc010bpd.2_5'UTR|PCSK6_uc010bpe.2_Missense_Mutation_p.E104G|PCSK6_uc002bxa.2_Missense_Mutation_p.E104G|PCSK6_uc002bxb.2_Missense_Mutation_p.E104G|PCSK6_uc002bxc.1_Missense_Mutation_p.E104G|PCSK6_uc002bxd.1_Missense_Mutation_p.E104G|PCSK6_uc002bxe.2_Missense_Mutation_p.E104G|PCSK6_uc002bxg.1_Missense_Mutation_p.E104G	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	104					glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GTAGTAATCTTCCAGGTTTCC	0.438													68	78					0	0	0.000781405	0	0
CHTF18	63922	broad.mit.edu	37	16	840202	840202	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:840202G>A	uc002cke.3	+	5	695	c.632G>A	c.(631-633)CGA>CAA	p.R211Q	RPUSD1_uc002cka.2_5'Flank|RPUSD1_uc002ckb.2_5'Flank|RPUSD1_uc002ckc.2_5'Flank|RPUSD1_uc002ckd.2_5'Flank|CHTF18_uc010uus.1_Missense_Mutation_p.R211Q|CHTF18_uc010bre.1_RNA|CHTF18_uc002ckf.3_Missense_Mutation_p.R239Q|CHTF18_uc010brf.2_5'UTR|CHTF18_uc002ckg.3_5'UTR	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	211					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				GTCCCATGGCGAGGCGGTGGC	0.662													5	3					0	0	3.59834e-05	0	0
BAIAP3	8938	broad.mit.edu	37	16	1392257	1392257	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:1392257C>T	uc002clk.1	+	11	1035	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	BAIAP3_uc002clj.2_Silent_p.F327F|BAIAP3_uc010uuz.1_Silent_p.F310F|BAIAP3_uc010uva.1_Silent_p.F282F|BAIAP3_uc010uvb.1_Silent_p.F362F|BAIAP3_uc010uvc.1_Silent_p.F310F	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	345					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				CCGATGACTTCCTGGGGTGCC	0.617													16	9					0	0	0.00074312	0	0
CLDN6	9074	broad.mit.edu	37	16	3065551	3065551	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:3065551G>C	uc002csu.3	-	2	532	c.472C>G	c.(472-474)CGG>GGG	p.R158G		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	158	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CCCAGCTCCCGCTTTTGGGCC	0.647													4	11					0	0	3.59834e-05	0	0
CCDC64B	146439	broad.mit.edu	37	16	3085370	3085370	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:3085370C>T	uc002ctf.3	-	1	173	c.128G>A	c.(127-129)GGG>GAG	p.G43E	CCDC64B_uc002cte.3_5'Flank	NM_001103175	NP_001096645	A1A5D9	BICR2_HUMAN	coiled-coil domain containing 64B	43											0						CTCCTCAGGCCCTGGGCCCCC	0.667													4	2					0	0	0.00024832	0	0
C16orf45	89927	broad.mit.edu	37	16	15677012	15677013	+	Splice_Site	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:15677012_15677013GG>AA	uc002ddo.2	+	5	606	c.420_splice	c.e5-1	p.R140_splice	C16orf45_uc002ddp.2_Splice_Site_p.R123_splice	NM_033201	NP_149978	Q96MC5	CP045_HUMAN	hypothetical protein LOC89927 isoform 1											ovary(1)	1						TACTTTCACAGGGAGCAAGAAG	0.376													24	103					0	0	6.4e-05	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29909234	29909234	+	Silent	SNP	G	A	A	rs144297281	byFrequency	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:29909234G>A	uc002duq.3	-	2	391	c.151C>T	c.(151-153)CTG>TTG	p.L51L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.L51L|SEZ6L2_uc002dur.3_Silent_p.L51L|SEZ6L2_uc002dus.3_Silent_p.L51L|SEZ6L2_uc010vec.1_Silent_p.L51L|SEZ6L2_uc010ved.1_Intron|ASPHD1_uc002dut.2_5'Flank|ASPHD1_uc002duu.3_5'Flank|ASPHD1_uc010bzi.2_5'Flank	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	51	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AGTTCAGCCAGGGCCTCAGAG	0.632													16	33					0	0	0.000308642	0	0
PPP4C	5531	broad.mit.edu	37	16	30096328	30096328	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:30096328C>T	uc002dwe.2	+	9	1013	c.869C>T	c.(868-870)CCC>CTC	p.P290L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|PPP4C_uc002dwf.2_Missense_Mutation_p.P290L|PPP4C_uc002dwg.2_RNA|PPP4C_uc002dwh.2_Missense_Mutation_p.P211L	NM_002720	NP_002711	P60510	PP4C_HUMAN	protein phosphatase 4, catalytic subunit	290					microtubule cytoskeleton organization|regulation of double-strand break repair via homologous recombination	centrosome|nucleus	metal ion binding|NF-kappaB-inducing kinase activity|protein binding|protein serine/threonine phosphatase activity			skin(1)	1						GAGGCTGCTCCCCAAGAGACA	0.637													22	62					0	0	0.000720815	0	0
ZNF48	197407	broad.mit.edu	37	16	30409370	30409370	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:30409370G>A	uc002dya.1	+	2	858	c.799G>A	c.(799-801)GGA>AGA	p.G267R	ZNF48_uc002dxz.1_Missense_Mutation_p.G144R	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCTACCCAGGGACCGAAGGC	0.662													24	13					0	0	0.000720815	0	0
ZNF768	79724	broad.mit.edu	37	16	30536914	30536914	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:30536914T>A	uc002dyk.3	-	2	723	c.547A>T	c.(547-549)AAG>TAG	p.K183*	ZNF768_uc010vex.1_Nonsense_Mutation_p.K152*|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Nonsense_Mutation_p.K152*	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	183					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						AAAGGACTCTTTTCCTCGGGG	0.527													84	38					0	0	0.000781405	0	0
ARMC5	79798	broad.mit.edu	37	16	31473666	31473666	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:31473666C>T	uc002ecc.2	+	3	1327	c.798C>T	c.(796-798)AGC>AGT	p.S266S	ARMC5_uc010vfn.1_Silent_p.S361S|ARMC5_uc010vfo.1_Silent_p.S298S|ARMC5_uc002eca.3_Silent_p.S266S|ARMC5_uc010vfp.1_Intron|ARMC5_uc002ecb.2_Silent_p.S266S	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	266	ARM 3.						binding			pancreas(1)	1						TGGAACTCAGCCGAGGCTGCT	0.682													5	7					0	0	3.59834e-05	0	0
CHD9	80205	broad.mit.edu	37	16	53358296	53358296	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:53358296G>A	uc002ehb.2	+	38	8347	c.8183G>A	c.(8182-8184)GGA>GAA	p.G2728E	CHD9_uc002egy.2_Missense_Mutation_p.G2712E|CHD9_uc002ehc.2_Missense_Mutation_p.G2713E|CHD9_uc002ehf.2_Missense_Mutation_p.G1826E|CHD9_uc010cbw.2_Missense_Mutation_p.G794E	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2728					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TTGGGCATGGGAGGACTCCTG	0.493													7	22					0	0	0.000274275	0	0
HYDIN	54768	broad.mit.edu	37	16	71218869	71218869	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr16:71218869C>T	uc002ezr.2	-	3	288	c.160G>A	c.(160-162)GAA>AAA	p.E54K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E54K|HYDIN_uc010vmc.1_Missense_Mutation_p.E71K|HYDIN_uc010vmd.1_Missense_Mutation_p.E81K|HYDIN_uc002ezw.3_Missense_Mutation_p.E71K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	54										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGGACATTTCCTTCAGGAAC	0.408													10	2					0	0	0.000673444	0	0
FAM57A	79850	broad.mit.edu	37	17	641230	641230	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:641230C>T	uc002frp.2	+	3	392	c.351C>T	c.(349-351)AAC>AAT	p.N117N	FAM57A_uc002frq.2_Silent_p.N117N|FAM57A_uc002frr.2_Silent_p.N27N	NM_024792	NP_079068	Q8TBR7	FA57A_HUMAN	family with sequence similarity 57, member A	117	TLC.|Helical; (Potential).					integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0217)		TAAGTCGAAACCGCCTCATGA	0.542													60	75					0	0	0.000781405	0	0
SMG6	23293	broad.mit.edu	37	17	2203327	2203328	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:2203327_2203328GG>AA	uc002fub.1	-	2	774_775	c.719_720CC>TT	c.(718-720)TCC>TTT	p.S240F	SMG6_uc002fud.1_Missense_Mutation_p.S209F	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	240	Interaction with telomeric DNA.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						AGCGCTTTGCGGAGCCCGGCCT	0.629													47	49					0	0	6.4e-05	0	0
CAMKK1	84254	broad.mit.edu	37	17	3788759	3788759	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:3788759G>A	uc002fwt.2	-	2	317	c.223C>T	c.(223-225)CTA>TTA	p.L75L	CAMKK1_uc002fwu.2_Silent_p.L75L|CAMKK1_uc002fwv.2_Silent_p.L75L	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	75					synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		CGCTCCTGTAGGGAAAGCTTC	0.677													12	12					0	0	0.000978159	0	0
GPR172B	55065	broad.mit.edu	37	17	4937210	4937210	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:4937210G>A	uc002gap.3	-	3	1287	c.574C>T	c.(574-576)CCT>TCT	p.P192S	GPR172B_uc002gao.3_Missense_Mutation_p.P192S|GPR172B_uc010ckw.2_Missense_Mutation_p.P70S|GPR172B_uc010ckx.2_Missense_Mutation_p.P192S	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	192	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0						GTGCTGGCAGGAAAACGCTCA	0.627													52	49					0	0	0.000781405	0	0
NLRP1	22861	broad.mit.edu	37	17	5486158	5486158	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:5486158G>A	uc002gci.2	-	2	835	c.280C>T	c.(280-282)CCC>TCC	p.P94S	NLRP1_uc002gcg.1_Missense_Mutation_p.P94S|NLRP1_uc002gck.2_Missense_Mutation_p.P94S|NLRP1_uc002gcj.2_Missense_Mutation_p.P94S|NLRP1_uc002gcl.2_Missense_Mutation_p.P94S|NLRP1_uc002gch.3_Missense_Mutation_p.P94S|NLRP1_uc010clh.2_Missense_Mutation_p.P94S	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	94					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGGAATGAGGGAGAGTGGCCT	0.597													5	12					0	0	3.59834e-05	0	0
C17orf74	201243	broad.mit.edu	37	17	7329509	7329509	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:7329509G>A	uc002ggw.2	+	3	272	c.199G>A	c.(199-201)GAA>AAA	p.E67K	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	67						integral to membrane					0		Prostate(122;0.157)				TTCCCCAGATGAAATTCAGGC	0.562													44	37					0	0	0.000781405	0	0
DNAH2	146754	broad.mit.edu	37	17	7660411	7660411	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:7660411C>T	uc002giu.1	+	12	1921	c.1907C>T	c.(1906-1908)TCC>TTC	p.S636F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	636	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCTCAAAGGTCCCTTCTGATT	0.567													162	147					0	0	0.000781405	0	0
DNAH2	146754	broad.mit.edu	37	17	7671298	7671298	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:7671298C>T	uc002giu.1	+	22	3770	c.3756C>T	c.(3754-3756)TTC>TTT	p.F1252F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1252	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTGGCCGGTTCCTGATCCTGC	0.582													26	35					0	0	0.000878237	0	0
PER1	5187	broad.mit.edu	37	17	8049754	8049754	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:8049754G>A	uc002gkd.2	-	16	2212	c.1974C>T	c.(1972-1974)ACC>ACT	p.T658T	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Silent_p.T642T	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	658	CSNK1E binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CTGAGGAGGTGGTATAGGAGG	0.587			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					38	32					0	0	0.000953801	0	0
WDR16	146845	broad.mit.edu	37	17	9515788	9515788	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:9515788C>T	uc002gly.2	+	8	1086	c.1017C>T	c.(1015-1017)GTC>GTT	p.V339V	WDR16_uc002glz.2_Silent_p.V271V|WDR16_uc010coc.2_Silent_p.V349V	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	339	WD 5.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGATATTGTCTTTCCATTGT	0.333													19	35					0	0	0.000175454	0	0
MYH13	8735	broad.mit.edu	37	17	10204920	10204920	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:10204920T>C	uc002gmk.1	-	40	5858	c.5768A>G	c.(5767-5769)AAG>AGG	p.K1923R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1923	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGCCCTCAGCTTGTTGACCTG	0.592													56	74					0	0	0.000781405	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319870	21319870	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:21319870C>T	uc002gyv.1	+	3	1921	c.1216C>T	c.(1216-1218)CCC>TCC	p.P406S		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	406	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGGCCTCAGCCCCCAGGCCAG	0.662										Prostate(3;0.18)			8	38					0	0	0.000157383	0	0
WSB1	26118	broad.mit.edu	37	17	25628924	25628924	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:25628924T>G	uc002gzd.1	+	2	467	c.151T>G	c.(151-153)TGG>GGG	p.W51G	WSB1_uc010vzy.1_Missense_Mutation_p.W51G|WSB1_uc010vzz.1_Missense_Mutation_p.W20G|WSB1_uc010crf.1_Intron|WSB1_uc002gze.1_Intron|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	51	WD 1.				intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		ATACTTTGCTTGGTCACAAGG	0.418													102	106					0	0	0.000781405	0	0
CCL18	6362	broad.mit.edu	37	17	34397893	34397893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:34397893C>T	uc002hku.2	+	2	214	c.154C>T	c.(154-156)CCC>TCC	p.P52S		NM_002988	NP_002979	P55774	CCL18_HUMAN	small inducible cytokine A18 precursor	52					cell-cell signaling|chemotaxis|immune response|inflammatory response|response to biotic stimulus|signal transduction	extracellular space	chemokine activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGAAACCAGCCCCCAGTGCCC	0.557													23	18					0	0	0.000878237	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40620064	40620064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:40620064C>T	uc002hzr.2	+	4	400	c.233C>T	c.(232-234)CCG>CTG	p.P78L	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.P78L|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.P78L|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.P78L|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.P78L|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc010wgl.1_5'Flank|ATP6V0A1_uc002hzp.1_Missense_Mutation_p.P78L	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	78	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		GCTAACATTCCGATTATGGAC	0.393													21	2					0	0	0.00047179	0	0
SPOP	8405	broad.mit.edu	37	17	47688703	47688704	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:47688703_47688704GA>AT	uc010dbk.2	-	7	1228_1229	c.596_597TC>AT	c.(595-597)TTC>TAT	p.F199Y	SPOP_uc002ipb.2_Missense_Mutation_p.F199Y|SPOP_uc002ipc.2_Missense_Mutation_p.F199Y|SPOP_uc002ipd.2_Missense_Mutation_p.F199Y|SPOP_uc002ipe.2_Missense_Mutation_p.F199Y|SPOP_uc002ipf.2_Missense_Mutation_p.F199Y|SPOP_uc002ipg.2_Missense_Mutation_p.F199Y	NM_003563	NP_003554	O43791	SPOP_HUMAN	speckle-type POZ protein	199	BTB.				mRNA processing	nucleus	protein binding			prostate(2)|ovary(2)|lung(2)	6						AGCAGTCTGTGAACCGGGAATT	0.47										Prostate(2;0.17)			82	1					0	0	6.4e-05	0	0
KIF2B	84643	broad.mit.edu	37	17	51901110	51901110	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:51901110C>T	uc002iua.2	+	1	872	c.716C>T	c.(715-717)CCC>CTC	p.P239L	uc010wna.1_Intron	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	239	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ATCACCGTCCCCTCGGACAAT	0.557													16	2					0	0	0.000566183	0	0
EVPL	2125	broad.mit.edu	37	17	74003575	74003575	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:74003575G>A	uc002jqi.2	-	22	5939	c.5711C>T	c.(5710-5712)ACC>ATC	p.T1904I	EVPL_uc010wss.1_Missense_Mutation_p.T1926I|EVPL_uc010wst.1_Missense_Mutation_p.T1374I	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1904	Globular 2.|Plectin 5.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCGATGCCGGTGAAGGCCTT	0.647													26	21					0	0	0.000184323	0	0
EXOC7	23265	broad.mit.edu	37	17	74097430	74097430	+	Silent	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:74097430C>A	uc002jqs.2	-	4	434	c.339G>T	c.(337-339)CTG>CTT	p.L113L	EXOC7_uc010dgv.1_Silent_p.L60L|EXOC7_uc002jqq.2_Silent_p.L113L|EXOC7_uc010wsw.1_Silent_p.L113L|EXOC7_uc010wsx.1_Silent_p.L113L|EXOC7_uc002jqr.2_Silent_p.L113L|EXOC7_uc010wsv.1_Silent_p.L72L|EXOC7_uc002jqu.2_Silent_p.L113L|EXOC7_uc002jqv.2_Silent_p.L113L	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	113					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			CCATGCTTCCCAGGTACTCTT	0.537													8	126					0.000157383	0.00172436	0.000157383	1	0
DSG3	1830	broad.mit.edu	37	18	29049138	29049138	+	Missense_Mutation	SNP	C	T	T	rs61730311	byFrequency	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr18:29049138C>T	uc002kws.2	+	12	1832	c.1723C>T	c.(1723-1725)CGG>TGG	p.R575W		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	575	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCAGAACAATCGGTGTGAGAT	0.527													63	78					0	0	0.000781405	0	0
MAPK4	5596	broad.mit.edu	37	18	48255650	48255650	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr18:48255650C>G	uc002lev.2	+	6	2190	c.1190C>G	c.(1189-1191)CCG>CGG	p.P397R	MAPK4_uc010xdm.1_Missense_Mutation_p.P186R|MAPK4_uc010doz.2_3'UTR	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	397					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CAGGTGGACCCGCGCAAGGAC	0.706													7	9					0	0	0.000157383	0	0
CNDP1	84735	broad.mit.edu	37	18	72234659	72234659	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr18:72234659C>T	uc002llq.2	+	6	958	c.747C>T	c.(745-747)TTC>TTT	p.F249F	CNDP1_uc002lls.2_Silent_p.F52F	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	249					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		ACAGCTACTTCATGGTGGAGG	0.502													34	30					0	0	0.00111076	0	0
SALL3	27164	broad.mit.edu	37	18	76753670	76753670	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr18:76753670C>T	uc002lmt.2	+	2	1679	c.1679C>T	c.(1678-1680)TCC>TTC	p.S560F	SALL3_uc010dra.2_Missense_Mutation_p.S167F	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	560					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TCGCCCGCCTCCAGCGAGTGC	0.756													6	6					0	0	8.12818e-05	0	0
NCLN	56926	broad.mit.edu	37	19	3205998	3205998	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:3205998C>T	uc002lxi.2	+	10	1424	c.1270C>T	c.(1270-1272)CGA>TGA	p.R424*	NCLN_uc002lxh.1_RNA|NCLN_uc002lxj.1_RNA|NCLN_uc002lxk.2_Nonsense_Mutation_p.R69*	NM_020170	NP_064555	Q969V3	NCLN_HUMAN	nicalin precursor	424	Lumenal (Potential).				proteolysis|regulation of signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	peptidase activity|protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.83e-113)|Epithelial(107;1.65e-111)|all cancers(105;1.53e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00139)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCCTGACTCGAGTCATCTA	0.378													73	88					0	0	0.000781405	0	0
FZR1	51343	broad.mit.edu	37	19	3527806	3527806	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:3527806C>T	uc010dtk.2	+	6	682	c.648C>T	c.(646-648)ACC>ACT	p.T216T	FZR1_uc002lxt.2_Silent_p.T216T|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	216	WD 1.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGCCTGTACCAGCCAGGTGG	0.622													16	17					0	0	0.000958276	0	0
PLIN4	729359	broad.mit.edu	37	19	4511269	4511270	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:4511269_4511270CC>TT	uc002mar.1	-	3	2660_2661	c.2660_2661GG>AA	c.(2659-2661)GGG>GAA	p.G887E	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	887	27 X 33 AA approximate tandem repeat.|25.					lipid particle|plasma membrane					0						CCCCTGTGAGCCCAGTGGACAC	0.619													7	112					0	0	6.4e-05	0	0
PLIN4	729359	broad.mit.edu	37	19	4511665	4511666	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:4511665_4511666CC>TT	uc002mar.1	-	3	2264_2265	c.2264_2265GG>AA	c.(2263-2265)GGG>GAA	p.G755E	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	755	27 X 33 AA approximate tandem repeat.|21.					lipid particle|plasma membrane					0						CCCCTGTGAGCCCAGTGGACAC	0.584													26	53					0	0	6.4e-05	0	0
TMEM146	257062	broad.mit.edu	37	19	5778646	5778646	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:5778646G>A	uc002mda.2	+	22	2417	c.2356G>A	c.(2356-2358)GGA>AGA	p.G786R		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	786	Cytoplasmic (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGAGCCCCCGGGACGCCACCG	0.592													27	28					0	0	0.000227799	0	0
C3	718	broad.mit.edu	37	19	6712354	6712354	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:6712354C>T	uc002mfm.2	-	11	1245	c.1183G>A	c.(1183-1185)GAC>AAC	p.D395N		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	395					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGCACAGTGTCCTCGCCCTGG	0.622													17	20					0	0	0.000566183	0	0
KIAA1543	57662	broad.mit.edu	37	19	7682655	7682655	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:7682655G>A	uc002mgv.3	+	17	3563	c.3462G>A	c.(3460-3462)AAG>AAA	p.K1154K	KIAA1543_uc002mgu.3_Silent_p.K1181K|KIAA1543_uc002mgw.2_Silent_p.K284K	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	1154	CKK.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						AGAAAAGCAAGGCCAACCACT	0.632													28	28					0	0	0.00106085	0	0
FCER2	2208	broad.mit.edu	37	19	7763658	7763658	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:7763658C>T	uc002mhn.2	-	3	289	c.105G>A	c.(103-105)TGG>TGA	p.W35*	FCER2_uc010xjs.1_5'UTR|FCER2_uc010xjt.1_5'UTR|FCER2_uc002mhm.2_Nonsense_Mutation_p.W35*|FCER2_uc010dvo.2_Nonsense_Mutation_p.W35*	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	35	Helical; Signal-anchor for type II membrane protein; (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						GCAGCCCAGCCCACAGAGCGG	0.662													7	11					0	0	0.000442599	0	0
FBN3	84467	broad.mit.edu	37	19	8165822	8165822	+	Silent	SNP	C	T	T	rs145943652	by1000genomes	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:8165822C>T	uc002mjf.2	-	40	5145	c.5124G>A	c.(5122-5124)CCG>CCA	p.P1708P		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1708						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGAGGAATCCCGGGGCCTGAT	0.597													39	44					0	0	0.000319135	0	0
MUC16	94025	broad.mit.edu	37	19	8998736	8998736	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:8998736C>T	uc002mkp.2	-	58	41051	c.40847G>A	c.(40846-40848)GGA>GAA	p.G13616E	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G433E|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCAGATGTTCCCAGGTCCAC	0.498													4	5					0	0	0.00024832	0	0
OR7E24	26648	broad.mit.edu	37	19	9362304	9362304	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:9362304C>T	uc002mlb.1	+	1	585	c.585C>T	c.(583-585)TTC>TTT	p.F195F		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTCTAATTTCTTCTGTGACC	0.398													19	40					0	0	0.000229342	0	0
TRMT1	55621	broad.mit.edu	37	19	13226814	13226814	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:13226814G>A	uc002mwj.2	-	2	557	c.307C>T	c.(307-309)CAG>TAG	p.Q103*	NACC1_uc002mwm.2_5'Flank|TRMT1_uc002mwk.2_Nonsense_Mutation_p.Q103*|TRMT1_uc002mwl.3_Nonsense_Mutation_p.Q103*|TRMT1_uc010xmz.1_5'UTR	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	103							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		CACTCACTCTGGATTCCTTTG	0.597													27	33					0	0	0.000339439	0	0
CPAMD8	27151	broad.mit.edu	37	19	17100518	17100518	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:17100518G>A	uc002nfb.2	-	13	1503	c.1471C>T	c.(1471-1473)CTC>TTC	p.L491F		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	444						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAGCTGCCGAGGGAGAGGTAG	0.597													28	24					0	0	0.000878237	0	0
ANO8	57719	broad.mit.edu	37	19	17442127	17442127	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:17442127G>A	uc002ngf.2	-	6	839	c.680C>T	c.(679-681)GCC>GTC	p.A227V	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	227	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						TTCACACACGGCCTGCACCCA	0.632													36	31					0	0	0.000319135	0	0
KCNN1	3780	broad.mit.edu	37	19	18084949	18084949	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:18084949G>A	uc002nht.2	+	3	562	c.252G>A	c.(250-252)GGG>GGA	p.G84G	KCNN1_uc010xqa.1_Silent_p.G84G	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	84					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GAGCCTCGGGGAAACCCTCAA	0.672													19	20					0	0	0.000878237	0	0
CRTC1	23373	broad.mit.edu	37	19	18886507	18886507	+	Silent	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:18886507G>T	uc002nkb.3	+	13	1657	c.1569G>T	c.(1567-1569)CCG>CCT	p.P523P	CRTC1_uc010ebv.2_Silent_p.P539P|CRTC1_uc010ebw.2_Silent_p.P359P|CRTC1_uc002nkc.3_Silent_p.P221P	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	523					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						TGTACAGCCCGGGCTCCACAC	0.657													23	23					4.7796e-09	5.29694e-08	0.000720815	1	0
COMP	1311	broad.mit.edu	37	19	18898354	18898354	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:18898354C>T	uc002nke.2	-	10	1117	c.1081G>A	c.(1081-1083)GAC>AAC	p.D361N	COMP_uc002nkd.2_Missense_Mutation_p.D328N|COMP_uc010xqj.1_Missense_Mutation_p.D308N	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	361	TSP type-3 4.		D -> Y (in EDM1; binds less calcium).|D -> V (in EDM1; Fairbank type).		anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						TGGTCTGTGTCCTTTTGGTCG	0.687													50	86					0	0	0.000781405	0	0
NCAN	1463	broad.mit.edu	37	19	19329755	19329755	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:19329755G>A	uc002nlz.2	+	3	204	c.105G>A	c.(103-105)AGG>AGA	p.R35R		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	35					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCAGCGAAAGGGGGCTCCACA	0.617													17	29					0	0	0.000132079	0	0
ZNF99	7652	broad.mit.edu	37	19	22942286	22942286	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:22942286C>T	uc010xrh.1	-	4	488	c.488G>A	c.(487-489)GGA>GAA	p.G163E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAATATTTTTCCCTGGGTAGT	0.284													25	37					0	0	0.000586117	0	0
CCNE1	898	broad.mit.edu	37	19	30313020	30313020	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:30313020T>C	uc002nsn.2	+	9	1006	c.823T>C	c.(823-825)TTT>CTT	p.F275L	CCNE1_uc002nso.2_Missense_Mutation_p.F260L|CCNE1_uc002nsp.2_Missense_Mutation_p.F22L	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	275					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			CCAGCAAATCTTTATACAGAT	0.498													33	41					0	0	0.000339439	0	0
ZNF792	126375	broad.mit.edu	37	19	35450180	35450180	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:35450180G>A	uc002nxh.1	-	4	966	c.579C>T	c.(577-579)GGC>GGT	p.G193G		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GGGAAGCCTGGCCCTCCTCCG	0.547													145	149					0	0	0.000781405	0	0
MAG	4099	broad.mit.edu	37	19	35793567	35793567	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:35793567A>G	uc002nyy.1	+	7	1336	c.1187A>G	c.(1186-1188)AAC>AGC	p.N396S	MAG_uc002nyx.1_Missense_Mutation_p.N396S|MAG_uc010eds.1_Missense_Mutation_p.N371S|MAG_uc002nyz.1_Missense_Mutation_p.N396S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	396	Ig-like C2-type 3.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GTGGCTGAGAACCAGTATGGC	0.612													36	32					0	0	0.000228196	0	0
PRODH2	58510	broad.mit.edu	37	19	36304113	36304113	+	Missense_Mutation	SNP	G	A	A	rs145723152		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:36304113G>A	uc002obx.1	-	1	89	c.71C>T	c.(70-72)ACC>ATC	p.T24I		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	24					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			tgaaaatacggttctcacgtt	0													17	19					0	0	0.000422831	0	0
NPHS1	4868	broad.mit.edu	37	19	36336419	36336419	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:36336419G>A	uc002oby.2	-	14	1781	c.1781C>T	c.(1780-1782)CCC>CTC	p.P594L		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	594	Ig-like C2-type 6.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGCTCTCCGGGGTGGGGCGGC	0.716													4	6					0	0	0.00024832	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349734	36349734	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:36349734G>A	uc002ocb.3	+	4	702	c.490G>A	c.(490-492)GGG>AGG	p.G164R	KIRREL2_uc002obz.3_Missense_Mutation_p.G164R|KIRREL2_uc002oca.3_Missense_Mutation_p.G114R|KIRREL2_uc002occ.3_Missense_Mutation_p.G111R|KIRREL2_uc002ocd.3_Missense_Mutation_p.G161R	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	164	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTTCCGAGATGGGGTCCTGTT	0.582													32	38					0	0	0.000409698	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858385	38858385	+	Missense_Mutation	SNP	G	A	A	rs147603617		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:38858385G>A	uc002oih.3	+	25	2986	c.2899G>A	c.(2899-2901)GAA>AAA	p.E967K	CATSPERG_uc002oig.3_Missense_Mutation_p.E927K|CATSPERG_uc002oif.3_Missense_Mutation_p.E607K|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	967	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CAGTGAGGACGAAATCTACCG	0.592													134	124					0	0	0.000781405	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914532	39914532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:39914532C>T	uc010xuz.1	+	19	3084	c.2759C>T	c.(2758-2760)TCC>TTC	p.S920F	PLEKHG2_uc010xuy.1_Missense_Mutation_p.S861F|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.S698F	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	920					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CTACATGTTTCCAATTTGCCT	0.592													41	38					0	0	0.000680045	0	0
CYP2S1	29785	broad.mit.edu	37	19	41711993	41711993	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:41711993C>T	uc002opw.2	+	8	1350	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Missense_Mutation_p.P157L	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	432					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						GCGTTCCTGCCCTTCTCCTTA	0.582													21	25					0	0	0.000229342	0	0
PSG5	5673	broad.mit.edu	37	19	43689023	43689024	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:43689023_43689024CG>AT	uc002ovu.2	-	2	471_472	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.R42M|PSG5_uc002ovx.2_Missense_Mutation_p.R114M|PSG5_uc002ovv.2_Missense_Mutation_p.R114M|PSG5_uc002ovw.2_Missense_Mutation_p.R114M	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	114	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				TGCGTCTTCCCGGGTGACATTC	0.431													11	439					0	0	6.4e-05	0	0
TEX101	83639	broad.mit.edu	37	19	43920355	43920355	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:43920355G>A	uc010xwo.1	+	3	364	c.169G>A	c.(169-171)GGG>AGG	p.G57R	TEX101_uc002owk.2_Missense_Mutation_p.G75R	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	57						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				TTGTGACAAAGGGGCACTTTG	0.468													32	39					0	0	0.00058488	0	0
ZNF223	7766	broad.mit.edu	37	19	44564658	44564658	+	Silent	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:44564658G>T	uc002oyf.1	+	3	319	c.66G>T	c.(64-66)CTG>CTT	p.L22L	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	22	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				AGGAGGAGCTGGGGCTGCTGG	0.517													8	197					3.86212e-05	0.00042476	0.000673444	1	0
HIF3A	64344	broad.mit.edu	37	19	46832713	46832713	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:46832713C>T	uc002peh.2	+	12	1719	c.1690C>T	c.(1690-1692)CCC>TCC	p.P564S	HIF3A_uc002peg.3_Missense_Mutation_p.P564S|HIF3A_uc002pei.3_Missense_Mutation_p.P508S|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.P508S|HIF3A_uc010xxy.1_Missense_Mutation_p.P495S|HIF3A_uc002pel.2_Missense_Mutation_p.P562S|HIF3A_uc010xxz.1_Missense_Mutation_p.P513S	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	564	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		AGCATCCTCTCCCATGGCTGG	0.542													7	5					0	0	8.12818e-05	0	0
GNG8	94235	broad.mit.edu	37	19	47137438	47137438	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:47137438G>A	uc010xyd.1	-	2	108	c.108C>T	c.(106-108)CTC>CTT	p.L36L		NM_033258	NP_150283	Q9UK08	GBG8_HUMAN	guanine nucleotide binding protein (G protein),	36					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.000621)|Epithelial(262;0.0171)|GBM - Glioblastoma multiforme(486;0.0325)		AGAAAGCCAGGAGTTCCGCTG	0.667													6	16					0	0	3.59834e-05	0	0
FUT2	2524	broad.mit.edu	37	19	49207161	49207161	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:49207161C>T	uc002pke.3	+	2	1059	c.948C>T	c.(946-948)TTC>TTT	p.F316F	FUT2_uc010emc.2_Silent_p.F316F	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	316	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		ACTCCCCTTTCCTCAAAATCT	0.567													43	48					0	0	0.000509022	0	0
PRRG2	5639	broad.mit.edu	37	19	50086975	50086975	+	Splice_Site	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:50086975G>A	uc002pon.3	+	3	426	c.261_splice	c.e3+1	p.T87_splice	PRRG2_uc010yaz.1_Splice_Site_p.T64_splice	NM_000951	NP_000942	O14669	TMG2_HUMAN	proline rich Gla (G-carboxyglutamic acid) 2							extracellular region|integral to plasma membrane	calcium ion binding			skin(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00295)|GBM - Glioblastoma multiforme(134;0.0121)		CACTCTCACGGTGAGGGCCTC	0.592													33	31					0	0	0.000491102	0	0
CD33	945	broad.mit.edu	37	19	51729603	51729603	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:51729603G>A	uc002pwa.2	+	4	776	c.736G>A	c.(736-738)GAT>AAT	p.D246N	CD33_uc010eos.1_Missense_Mutation_p.D246N|CD33_uc010eot.1_Missense_Mutation_p.D119N|CD33_uc010eou.1_Intron	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	246	Extracellular (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CTTTCCAGGAGATGGCTCAGG	0.493													49	51					0	0	0.000781405	0	0
ZNF578	147660	broad.mit.edu	37	19	53014718	53014718	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:53014718C>T	uc002pzp.3	+	6	1328	c.1084C>T	c.(1084-1086)CGT>TGT	p.R362C		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	137	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		TAGATGCCATCGTAGACTTCA	0.393													67	76					0	0	0.000781405	0	0
ZNF761	388561	broad.mit.edu	37	19	53958948	53958948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:53958948C>T	uc010eqp.2	+	7	1645	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	ZNF761_uc010ydy.1_Missense_Mutation_p.S342F|ZNF761_uc002qbt.1_Missense_Mutation_p.S342F	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	396	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CACAAGTCATCCCTTACATGC	0.388													70	90					0	0	0.000781405	0	0
MIR1323	100302255	broad.mit.edu	37	19	54175238	54175238	+	RNA	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:54175238C>T	hsa-mir-1323|MI0003786	+			c.17C>T			MIR498_hsa-mir-498|MI0003142_5'Flank																	0						GTCCTCAAAACTGAGGGGCAT	0.483													65	48					0	0	0.000781405	0	0
OSCAR	126014	broad.mit.edu	37	19	54603039	54603039	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:54603039C>T	uc002qdd.2	-	3	262	c.145G>A	c.(145-147)GTC>ATC	p.V49I	OSCAR_uc002qcy.2_Missense_Mutation_p.V24M|OSCAR_uc002qcz.2_Missense_Mutation_p.V24I|OSCAR_uc002qda.2_Missense_Mutation_p.V24M|OSCAR_uc002qdb.2_Intron|OSCAR_uc010erc.2_5'UTR|OSCAR_uc002qdc.2_Intron	NM_206818	NP_996554	Q8IYS5	OSCAR_HUMAN	osteoclast-associated receptor isoform 1	24	Ig-like 1.					extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)					GGCTACTCACCAGACGGAGTG	0.368													30	36					0	0	0.000279167	0	0
LILRA6	79168	broad.mit.edu	37	19	54745699	54745699	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:54745699C>T	uc002qeu.1	-	4	535	c.411G>A	c.(409-411)GGG>GGA	p.G137G	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Silent_p.G137G|LILRA6_uc002qek.1_Silent_p.G137G|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Silent_p.G137G|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.G137G|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Silent_p.G137G|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Silent_p.G137G|LILRA6_uc010yep.1_Silent_p.G137G|LILRA6_uc010yeq.1_Silent_p.G137G|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_5'UTR	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	137	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCATATTCCCCCCTGAGGCCA	0.572													29	73					0	0	0.000953801	0	0
FCAR	2204	broad.mit.edu	37	19	55396921	55396921	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:55396921G>A	uc002qhr.1	+	3	542	c.345G>A	c.(343-345)CTG>CTA	p.L115L	FCAR_uc002qhq.2_Silent_p.L115L|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.L88L|FCAR_uc010esi.1_Silent_p.L88L|FCAR_uc002qhu.1_Silent_p.L115L|FCAR_uc002qhv.1_Silent_p.L115L|FCAR_uc002qhw.1_Silent_p.L103L|FCAR_uc002qhx.1_Silent_p.L103L|FCAR_uc002qhy.1_Silent_p.L103L|FCAR_uc002qhz.1_Silent_p.L103L|FCAR_uc002qia.1_Intron	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	115	Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		GTGACACCCTGGAGCTGGTAG	0.408													33	26					0	0	0.00058488	0	0
NLRP9	338321	broad.mit.edu	37	19	56228167	56228167	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:56228167G>A	uc002qly.2	-	5	2285	c.2257C>T	c.(2257-2259)CCC>TCC	p.P753S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	753	LRR 1.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TCCCTCAAGGGATTTTCTACC	0.527													48	53					0	0	0.000781405	0	0
NLRP9	338321	broad.mit.edu	37	19	56244763	56244763	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:56244763C>T	uc002qly.2	-	2	462	c.434G>A	c.(433-435)CGA>CAA	p.R145Q		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	145						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CACAGTGTGTCGTCTAGCCGC	0.438													48	54					0	0	0.000781405	0	0
NLRP11	204801	broad.mit.edu	37	19	56321130	56321130	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:56321130C>T	uc010ygf.1	-	5	1557	c.846G>A	c.(844-846)GGG>GGA	p.G282G	NLRP11_uc002qlz.2_Silent_p.G183G|NLRP11_uc002qmb.2_Silent_p.G183G|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	282	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTACATTATTCCCACGTGTGG	0.463													28	40					0	0	0.00106085	0	0
ZNF835	90485	broad.mit.edu	37	19	57175863	57175863	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:57175863G>A	uc010ygo.1	-	2	770	c.770C>T	c.(769-771)TCG>TTG	p.S257L	ZNF835_uc010ygn.1_Missense_Mutation_p.S235L	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						TATCAGGGACGAGCGGTTGCG	0.697													11	10					0	0	0.000978159	0	0
ZNF211	10520	broad.mit.edu	37	19	58152816	58152816	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:58152816C>T	uc002qpq.2	+	3	1142	c.962C>T	c.(961-963)TCG>TTG	p.S321L	ZNF211_uc010yhb.1_Missense_Mutation_p.S325L|ZNF211_uc002qpp.2_Missense_Mutation_p.S334L|ZNF211_uc002qpr.2_Missense_Mutation_p.S385L|ZNF211_uc002qps.2_Missense_Mutation_p.S386L|ZNF211_uc002qpt.2_Missense_Mutation_p.S333L|ZNF211_uc010yhc.1_Missense_Mutation_p.S333L|ZNF211_uc010yhd.1_Missense_Mutation_p.S260L|ZNF211_uc010yhe.1_Missense_Mutation_p.S312L	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	321	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGTGGGAAATCGTTTAGTCAG	0.413													24	40					0	0	0.00047179	0	0
APOB	338	broad.mit.edu	37	2	21231052	21231053	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:21231052_21231053GG>TT	uc002red.2	-	26	8815_8816	c.8687_8688CC>AA	c.(8686-8688)CCC>CAA	p.P2896Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2896					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGTCCAGTTTGGGGATGTTCAA	0.431													10	343					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21235018	21235018	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:21235018G>A	uc002red.2	-	26	4850	c.4722C>T	c.(4720-4722)ACC>ACT	p.T1574T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1574					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACTTCCCATTGGTGTCAGATT	0.423													205	239					0	0	0.000781405	0	0
C2orf16	84226	broad.mit.edu	37	2	27804562	27804563	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:27804562_27804563GA>AT	uc002rkz.3	+	1	5174_5175	c.5123_5124GA>AT	c.(5122-5124)AGA>AAT	p.R1708N	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1708	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.|10.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCCTCTGAGAGAAGACATCACA	0.584													99	100					0	0	6.4e-05	0	0
ALK	238	broad.mit.edu	37	2	29451808	29451808	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:29451808C>T	uc002rmy.2	-	16	3664	c.2757G>A	c.(2755-2757)GGG>GGA	p.G919G		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	919	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CTCCGAAACCCCCTCTTGTCT	0.587			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				38	17					0	0	0.00111076	0	0
HAAO	23498	broad.mit.edu	37	2	43015740	43015740	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:43015740C>T	uc002rst.3	-	2	163	c.88G>A	c.(88-90)GAG>AAG	p.E30K	HAAO_uc010ynw.1_Missense_Mutation_p.E30K	NM_012205	NP_036337	P46952	3HAO_HUMAN	3-hydroxyanthranilate 3,4-dioxygenase	30	Domain A (catalytic) (By similarity).				neuron homeostasis|pyridine nucleotide biosynthetic process|quinolinate biosynthetic process|response to cadmium ion|response to zinc ion|tryptophan catabolic process	cytosol|soluble fraction	3-hydroxyanthranilate 3,4-dioxygenase activity|electron carrier activity|ferrous iron binding			ovary(1)	1						TTGAGCTGCTCCTGGTGCCTG	0.577													42	51					0	0	0.000781405	0	0
THADA	63892	broad.mit.edu	37	2	43797552	43797553	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:43797552_43797553GG>TT	uc002rsw.3	-	14	2513_2514	c.2161_2162CC>AA	c.(2161-2163)CCT>AAT	p.P721N	THADA_uc010far.2_5'UTR|THADA_uc002rsx.3_Missense_Mutation_p.P721N|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.P431N|THADA_uc010fat.1_5'UTR|THADA_uc002rta.2_Missense_Mutation_p.P431N|THADA_uc002rtb.1_Missense_Mutation_p.P721N|THADA_uc002rtc.3_Missense_Mutation_p.P721N|THADA_uc002rtd.2_Missense_Mutation_p.P721N	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	721							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AGAAACAGAAGGGTGCTGTTTG	0.312													10	422					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43819528	43819529	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:43819528_43819529CC>AA	uc002rsw.3	-	2	355_356	c.3_4GG>TT	c.(1-6)ATGGGT>ATTTGT	p.1_2MG>IC	THADA_uc002rsx.3_Missense_Mutation_p.1_2MG>IC|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Missense_Mutation_p.1_2MG>IC|THADA_uc002rtc.3_Missense_Mutation_p.1_2MG>IC|THADA_uc002rtd.2_Missense_Mutation_p.1_2MG>IC	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1_2							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TTCTTTACACCCATTTTAAATA	0.282													12	485					0	0	6.4e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927739	43927739	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:43927739C>T	uc010yny.1	+	8	1725	c.1642C>T	c.(1642-1644)CCT>TCT	p.P548S	PLEKHH2_uc002rte.3_Missense_Mutation_p.P548S|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P547S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	548						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GCACCGTTTTCCTTCTTGGGT	0.363													195	224					0	0	0.000781405	0	0
DYNC2LI1	51626	broad.mit.edu	37	2	44014378	44014379	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:44014378_44014379GG>TT	uc002rtk.2	+	4	316_317	c.220_221GG>TT	c.(220-222)GGG>TTG	p.G74L	DYNC2LI1_uc002rth.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rti.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rtj.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rtl.2_Missense_Mutation_p.G74L|DYNC2LI1_uc010ynz.1_Intron	NM_016008	NP_057092	Q8TCX1	DC2L1_HUMAN	dynein 2 light intermediate chain isoform 1	74						apical part of cell|axonemal dynein complex|cilium axoneme|cytoplasm|microtubule|motile primary cilium	motor activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AAGAGCAAAAGGGCACAACACA	0.366													11	477					0	0	6.4e-05	0	0
SLC3A1	6519	broad.mit.edu	37	2	44547555	44547555	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:44547555C>T	uc002ruc.3	+	10	1913	c.1835C>T	c.(1834-1836)TCG>TTG	p.S612L	PREPL_uc002ruf.2_3'UTR|PREPL_uc002rug.2_3'UTR|PREPL_uc002ruh.2_3'UTR|PREPL_uc010fax.2_3'UTR|PREPL_uc002rui.3_3'UTR|PREPL_uc002ruj.1_3'UTR|PREPL_uc002ruk.1_3'UTR|SLC3A1_uc002rud.3_Missense_Mutation_p.S334L|SLC3A1_uc002rue.3_Missense_Mutation_p.S232L	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	612	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	AATATGATTTCGGGCCTTCCC	0.403													21	25					0	0	0.000229342	0	0
BMP10	27302	broad.mit.edu	37	2	69098191	69098191	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:69098191G>A	uc002sez.1	-	1	459	c.300C>T	c.(298-300)CCC>CCT	p.P100P		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	100					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TGTTGGCAGAGGGCATGGAGG	0.418													59	61					0	0	0.000781405	0	0
AAK1	22848	broad.mit.edu	37	2	69704072	69704072	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:69704072C>A	uc002sfp.2	-	21	3236	c.2731G>T	c.(2731-2733)GAC>TAC	p.D911Y		NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	911						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						GCCACCTTGTCCGAGCCCTCA	0.433													17	20					8.10497e-08	8.94795e-07	0.000175454	1	0
ATP6V1B1	525	broad.mit.edu	37	2	71191884	71191884	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:71191884G>C	uc002shj.2	+	13	1354	c.1267G>C	c.(1267-1269)GGG>CGG	p.G423R	ATP6V1B1_uc010fdv.2_Missense_Mutation_p.G406R|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.G381R	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	423					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						CTATGCCATCGGGAAGGACGT	0.622											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	43					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	2	95552787	95552787	+	RNA	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:95552787G>A	uc002stv.1	-	7		c.803C>T								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		TAAAGACGAAGGATTATCTCA	0.378													16	17					0	0	0.000422831	0	0
GPAT2	150763	broad.mit.edu	37	2	96689126	96689126	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:96689126C>A	uc002svf.2	-	18	2182	c.1959G>T	c.(1957-1959)TGG>TGT	p.W653C	GPAT2_uc002svd.2_Missense_Mutation_p.W472C|GPAT2_uc002sve.2_Missense_Mutation_p.W455C|GPAT2_uc002svg.2_Missense_Mutation_p.W532C|GPAT2_uc010yuh.1_Missense_Mutation_p.W582C|GPAT2_uc002svh.2_Intron	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	653					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						CACTCGGTTTCCACAGCAGCT	0.587													19	23					1.40151e-16	1.57127e-15	0.000175454	1	0
ST6GAL2	84620	broad.mit.edu	37	2	107459731	107459731	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:107459731C>T	uc002tdq.2	-	2	822	c.703G>A	c.(703-705)GGG>AGG	p.G235R	ST6GAL2_uc002tdr.2_Missense_Mutation_p.G235R|ST6GAL2_uc002tds.3_Missense_Mutation_p.G235R	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	235	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						AAGCGCACCCCGTGCTTGTTG	0.677													11	7					0	0	0.000673444	0	0
DDX18	8886	broad.mit.edu	37	2	118582670	118582670	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:118582670C>T	uc002tlh.1	+	9	1460	c.1361C>T	c.(1360-1362)GCC>GTC	p.A454V		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	454	Helicase C-terminal.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						CCCGTCTTGGCCATTCATGTA	0.388													47	59					0	0	0.000781405	0	0
INSIG2	51141	broad.mit.edu	37	2	118864324	118864324	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:118864324C>T	uc002tlk.2	+	4	587	c.381C>T	c.(379-381)TTC>TTT	p.F127F	INSIG2_uc010yye.1_Silent_p.F19F|INSIG2_uc002tll.2_Silent_p.F19F	NM_016133	NP_057217	Q9Y5U4	INSI2_HUMAN	insulin induced protein 2	127					ER-nuclear sterol response pathway	SREBP-SCAP-Insig complex				ovary(1)|central_nervous_system(1)	2						AAGTGGATTTCGATAACAACA	0.378													23	25					0	0	0.000295444	0	0
LRP1B	53353	broad.mit.edu	37	2	141660609	141660609	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:141660609C>T	uc002tvj.1	-	23	4618	c.3646G>A	c.(3646-3648)GAT>AAT	p.D1216N	LRP1B_uc010fnl.1_Missense_Mutation_p.D398N	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1216	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTACAATAATCCACAATTTCA	0.433										TSP Lung(27;0.18)			6	11					0	0	3.59834e-05	0	0
EVX2	344191	broad.mit.edu	37	2	176944868	176944868	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:176944868C>T	uc010zeu.1	-	3	1584	c.1398G>A	c.(1396-1398)CCG>CCA	p.P466P		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	466						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CCCTCTGGTCCGGCGGGCTCA	0.726													4	4					0	0	0.00024832	0	0
DFNB59	494513	broad.mit.edu	37	2	179318186	179318187	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:179318186_179318187GG>AA	uc002umi.3	+	2	406_407	c.50_51GG>AA	c.(49-51)GGG>GAA	p.G17E	PRKRA_uc002umd.2_5'Flank|PRKRA_uc002ume.2_5'Flank|PRKRA_uc002umf.2_5'Flank|PRKRA_uc002umg.2_5'Flank|DFNB59_uc002umj.3_Missense_Mutation_p.G17E	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	17					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			GGAGATGGAGGGAGATTAGTTC	0.391													39	39					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179429054	179429054	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:179429054C>T	uc010zfg.1	-	275	74325	c.74101G>A	c.(74101-74103)GAA>AAA	p.E24701K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E18396K|TTN_uc010zfi.1_Missense_Mutation_p.E18329K|TTN_uc010zfj.1_Missense_Mutation_p.E18204K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25628							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATCAATTTCATCTCTTGCA	0.398													33	27					0	0	0.00058488	0	0
TTN	7273	broad.mit.edu	37	2	179611551	179611551	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:179611551C>T	uc002unb.2	-	46	15800	c.15576G>A	c.(15574-15576)AGG>AGA	p.R5192R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATATACCTTCCTTTTGGTCA	0.393													8	11					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179611806	179611806	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:179611806G>A	uc002unb.2	-	46	15545	c.15321C>T	c.(15319-15321)TCC>TCT	p.S5107S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGGGGTGTGGAATATCGCT	0.498													6	6					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179634464	179634464	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:179634464C>T	uc010zfg.1	-	37	9068	c.8844G>A	c.(8842-8844)TCG>TCA	p.S2948S	TTN_uc010zfh.1_Silent_p.S2902S|TTN_uc010zfi.1_Silent_p.S2902S|TTN_uc010zfj.1_Silent_p.S2902S|TTN_uc002unb.2_Silent_p.S2948S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2948							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTATTCTGCCGAGTCCTCTG	0.378													44	60					0	0	0.000680045	0	0
WDR12	55759	broad.mit.edu	37	2	203762065	203762066	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:203762065_203762066CC>AA	uc002uzl.2	-	5	1161_1162	c.411_412GG>TT	c.(409-414)GTGGGA>GTTTGA	p.G138*	WDR12_uc010ftt.2_Nonsense_Mutation_p.G138*	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	138	WD 2.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TCCGTATGTCCCACAATTGTCA	0.386													14	716					0	0	6.4e-05	0	0
ABCA12	26154	broad.mit.edu	37	2	215831649	215831649	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:215831649G>A	uc002vew.2	-	39	6027	c.5807C>T	c.(5806-5808)TCC>TTC	p.S1936F	ABCA12_uc002vev.2_Missense_Mutation_p.S1618F|ABCA12_uc010zjn.1_Missense_Mutation_p.S863F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1936					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGCTGGAAGGGAGTGATAGCC	0.388													11	18					0	0	0.000978159	0	0
ZNF142	7701	broad.mit.edu	37	2	219507627	219507627	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:219507627G>A	uc002vin.2	-	8	4048	c.3612C>T	c.(3610-3612)TTC>TTT	p.F1204F	ZNF142_uc002vil.2_Silent_p.F1165F|ZNF142_uc010fvt.2_Silent_p.F1041F|ZNF142_uc002vim.2_Silent_p.F1041F	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1204	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AAAAGTCACAGAAGGGGCACT	0.607													33	34					0	0	0.00058488	0	0
ACCN4	55515	broad.mit.edu	37	2	220399909	220399909	+	Silent	SNP	C	T	T	rs148110150		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:220399909C>T	uc002vma.2	+	5	1430	c.1416C>T	c.(1414-1416)GGC>GGT	p.G472G	ACCN4_uc002vlz.2_Silent_p.G491G|ACCN4_uc002vmb.2_Silent_p.G145G	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	472	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		TGGGTGGGGGCCCTGAGGGCC	0.647													14	33					0	0	0.000175454	0	0
NCL	4691	broad.mit.edu	37	2	232326634	232326634	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:232326634G>A	uc002vru.2	-	3	371	c.230C>T	c.(229-231)CCA>CTA	p.P77L	SNORD82_uc010fxw.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	77	2.|8 X 8 AA tandem repeats of X-T-P-X-K-K-X- X.				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		TTTCTTGGCTGGTGTGGCAAC	0.512													115	125					0	0	0.000781405	0	0
GIGYF2	26058	broad.mit.edu	37	2	233677153	233677153	+	Missense_Mutation	SNP	G	A	A	rs12618284		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:233677153G>A	uc002vti.3	+	20	2396	c.2059G>A	c.(2059-2061)GAT>AAT	p.D687N	GIGYF2_uc010zmj.1_Missense_Mutation_p.D687N|GIGYF2_uc002vtg.2_Missense_Mutation_p.D681N|GIGYF2_uc002vtj.3_Missense_Mutation_p.D708N|GIGYF2_uc002vtk.3_Missense_Mutation_p.D687N|GIGYF2_uc002vth.3_Missense_Mutation_p.D681N|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.D518N|GIGYF2_uc002vtq.3_Missense_Mutation_p.D20N	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	687	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GTCCGTGCCAGATACTGGCTC	0.403													26	27					0	0	0.000339439	0	0
KIF1A	547	broad.mit.edu	37	2	241658603	241658603	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:241658603G>A	uc002vzy.2	-	45	4877	c.4731C>T	c.(4729-4731)TCC>TCT	p.S1577S	KIF1A_uc010fzk.2_Silent_p.S1678S|KIF1A_uc002vzw.2_Silent_p.S238S|KIF1A_uc002vzx.2_Silent_p.S304S	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1577	PH.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		ACCCCTTCTTGGAAACGATCG	0.647													58	51					0	0	0.000781405	0	0
KIF1A	547	broad.mit.edu	37	2	241660367	241660367	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:241660367G>A	uc002vzy.2	-	43	4675	c.4529C>T	c.(4528-4530)TCT>TTT	p.S1510F	KIF1A_uc010fzk.2_Missense_Mutation_p.S1611F|KIF1A_uc002vzw.2_Missense_Mutation_p.S171F|KIF1A_uc002vzx.2_Missense_Mutation_p.S237F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1510					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TTCAACCAGAGAGGGGCAAGT	0.652													6	5					0	0	8.12818e-05	0	0
KIF1A	547	broad.mit.edu	37	2	241660412	241660412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr2:241660412G>A	uc002vzy.2	-	43	4630	c.4484C>T	c.(4483-4485)TCC>TTC	p.S1495F	KIF1A_uc010fzk.2_Missense_Mutation_p.S1596F|KIF1A_uc002vzw.2_Missense_Mutation_p.S156F|KIF1A_uc002vzx.2_Missense_Mutation_p.S222F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1495					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CCCTAGAGGGGACATCGACGG	0.647													9	13					0	0	0.000442599	0	0
PLCB4	5332	broad.mit.edu	37	20	9353698	9353698	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:9353698G>A	uc002wnf.2	+	11	827	c.691G>A	c.(691-693)GGA>AGA	p.G231R	PLCB4_uc010gbw.1_Missense_Mutation_p.G231R|PLCB4_uc010gbx.2_Missense_Mutation_p.G231R|PLCB4_uc002wne.2_Missense_Mutation_p.G231R|PLCB4_uc002wnh.2_Missense_Mutation_p.G78R	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	231					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTTCAGCAATGGAGACAAAAC	0.303													12	17					0	0	0.000219431	0	0
ESF1	51575	broad.mit.edu	37	20	13755845	13755845	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:13755845G>A	uc002woj.2	-	4	1215	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	ESF1_uc002wok.1_Silent_p.F369F	NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	369					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TAAATGAATTGAACAGAGCCA	0.318													68	70					0	0	0.000781405	0	0
ENTPD6	955	broad.mit.edu	37	20	25203498	25203498	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:25203498C>T	uc002wuj.2	+	12	1250	c.1070C>T	c.(1069-1071)GCT>GTT	p.A357V	ENTPD6_uc010zsz.1_Missense_Mutation_p.A139V|ENTPD6_uc002wum.2_Missense_Mutation_p.A340V|ENTPD6_uc010zta.1_Missense_Mutation_p.A357V|ENTPD6_uc002wun.2_Missense_Mutation_p.A323V|ENTPD6_uc002wuk.2_Missense_Mutation_p.A356V|ENTPD6_uc002wul.2_Missense_Mutation_p.A356V|ENTPD6_uc010ztb.1_Missense_Mutation_p.A329V|ENTPD6_uc010ztc.1_Missense_Mutation_p.A329V|ENTPD6_uc002wuo.2_Missense_Mutation_p.A109V|ENTPD6_uc010ztd.1_Missense_Mutation_p.A105V|ENTPD6_uc010gdk.1_RNA|ENTPD6_uc010gdl.1_RNA	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	357	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						GAGCTGTGTGCTGCCAGAGTG	0.587													62	53					0	0	0.000781405	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353													8	73					0	0	0.000274275	0	0
SRC	6714	broad.mit.edu	37	20	36031704	36031704	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:36031704C>T	uc002xgx.2	+	14	1982	c.1533C>T	c.(1531-1533)ACC>ACT	p.T511T	SRC_uc002xgy.2_Silent_p.T511T	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	511	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	AGCGGCCCACCTTCGAGTACC	0.687													6	10					0	0	8.12818e-05	0	0
TOP1	7150	broad.mit.edu	37	20	39750723	39750723	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:39750723G>T	uc002xjl.2	+	20	2369	c.2123G>T	c.(2122-2124)CGA>CTA	p.R708L	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	708					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	GCCACAGACCGAGAGGAAAAT	0.473			T	NUP98	AML*								43	53					1.8453e-21	2.07282e-20	0.000509022	1	0
PTPRT	11122	broad.mit.edu	37	20	40944562	40944562	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:40944562G>A	uc002xkg.2	-	12	2124	c.1940C>T	c.(1939-1941)TCG>TTG	p.S647L	PTPRT_uc010ggj.2_Missense_Mutation_p.S647L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	647	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CACGGGCACCGAAAAGCACTC	0.517													35	48					0	0	0.000814825	0	0
DNTTIP1	116092	broad.mit.edu	37	20	44429737	44429737	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:44429737G>A	uc002xpk.2	+	5	465	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NM_052951	NP_443183	Q9H147	TDIF1_HUMAN	terminal deoxynucleotidyltransferase interacting	133						nucleus				ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.0122)				TTCAGATGGAGAAAAAGTAAT	0.463													43	68					0	0	0.000781405	0	0
STAU1	6780	broad.mit.edu	37	20	47733717	47733717	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:47733717C>T	uc002xud.2	-	12	1989	c.1578G>A	c.(1576-1578)CAG>CAA	p.Q526Q	STAU1_uc002xua.2_Silent_p.Q445Q|STAU1_uc002xub.2_Silent_p.Q451Q|STAU1_uc002xuc.2_Silent_p.Q445Q|STAU1_uc002xue.2_Silent_p.Q445Q|STAU1_uc002xuf.2_Silent_p.Q451Q|STAU1_uc002xug.2_Silent_p.Q526Q	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	526						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TCAGAGGTGGCTGAGAGGAGC	0.468													36	38					0	0	0.000814825	0	0
NFATC2	4773	broad.mit.edu	37	20	50139794	50139794	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:50139794G>A	uc002xwd.2	-	2	1206	c.986C>T	c.(985-987)CCC>CTC	p.P329L	NFATC2_uc002xwc.2_Missense_Mutation_p.P329L|NFATC2_uc010zyv.1_Missense_Mutation_p.P110L|NFATC2_uc010zyw.1_Missense_Mutation_p.P110L|NFATC2_uc010zyx.1_Missense_Mutation_p.P309L|NFATC2_uc010zyy.1_Missense_Mutation_p.P110L|NFATC2_uc010zyz.1_Missense_Mutation_p.P110L|NFATC2_uc002xwe.2_Missense_Mutation_p.P309L	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	329					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CACCGGCGAGGGGTCAGGGCT	0.677													22	32					0	0	0.000375601	0	0
ZNF831	128611	broad.mit.edu	37	20	57829289	57829289	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:57829289C>T	uc002yan.2	+	5	4525	c.4525C>T	c.(4525-4527)CAC>TAC	p.H1509Y		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1509						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCAGGAAATTCACAGTGCTGA	0.522													15	15					0	0	0.000566183	0	0
TNFRSF6B	8771	broad.mit.edu	37	20	62328250	62328250	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr20:62328250G>A	uc002yfy.2	+	5	564	c.130G>A	c.(130-132)GGG>AGG	p.G44R	RTEL1_uc011abd.1_3'UTR|RTEL1_uc011abe.1_3'UTR|RTEL1_uc002yfw.2_RNA|RTEL1_uc002yfx.1_3'UTR|TNFRSF6B_uc002yfz.2_Missense_Mutation_p.G44R	NM_032945	NP_116563	O95407	TNF6B_HUMAN	tumor necrosis factor receptor superfamily,	44	TNFR-Cys 1.				anti-apoptosis|apoptosis	extracellular region|soluble fraction	protein binding|receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.66e-12)|all_epithelial(29;2.56e-13)|Lung NSC(23;1.06e-08)|all_lung(23;3.34e-08)		Epithelial(9;1.78e-08)|all cancers(9;7.89e-08)|OV - Ovarian serous cystadenocarcinoma(5;0.00504)			CGCAGAGACAGGGGAGCGGCT	0.721													9	12					0	0	0.000978159	0	0
TPTE	7179	broad.mit.edu	37	21	10914443	10914443	+	Splice_Site	SNP	C	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr21:10914443C>G	uc002yip.1	-	21	1645	c.1277_splice	c.e21-1	p.R426_splice	TPTE_uc002yis.1_Splice_Site|TPTE_uc002yiq.1_Splice_Site_p.R408_splice|TPTE_uc002yir.1_Splice_Site_p.R388_splice|TPTE_uc010gkv.1_Splice_Site_p.R288_splice	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGTACATAACCTGTTCCAACA	0.308													8	46					0	0	0.000157383	0	0
DSCAM	1826	broad.mit.edu	37	21	41427756	41427756	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr21:41427756C>T	uc002yyq.1	-	29	5383	c.4931G>A	c.(4930-4932)CGG>CAG	p.R1644Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1644	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATCTGAAGTCCGGGTATTCTT	0.433													49	85					0	0	0.000781405	0	0
DSCAM	1826	broad.mit.edu	37	21	41452109	41452109	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr21:41452109C>T	uc002yyq.1	-	25	4842	c.4390G>A	c.(4390-4392)GAA>AAA	p.E1464K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1464	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCTATGATTTCACTTATGCGC	0.458													65	68					0	0	0.000781405	0	0
DSCAM	1826	broad.mit.edu	37	21	41684158	41684158	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr21:41684158G>A	uc002yyq.1	-	9	2364	c.1912C>T	c.(1912-1914)CCT>TCT	p.P638S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	638	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGGCTCCCAGGGATTGGCCGG	0.532													11	25					0	0	0.000219431	0	0
UMODL1	89766	broad.mit.edu	37	21	43539232	43539232	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr21:43539232C>T	uc002zaf.1	+	15	2487	c.2487C>T	c.(2485-2487)TCC>TCT	p.S829S	UMODL1_uc002zad.1_Silent_p.S757S|UMODL1_uc002zae.1_Silent_p.S885S|UMODL1_uc002zag.1_Silent_p.S957S|UMODL1_uc002zal.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	829	Extracellular (Potential).|SEA 2.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGCGGGGCTCCCTGCCAGCCA	0.622													35	54					0	0	0.00058488	0	0
SF3A1	10291	broad.mit.edu	37	22	30735145	30735145	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr22:30735145C>T	uc003ahl.2	-	10	1603	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	491					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						TGGATCTCCTCCTCACCGATC	0.512													75	92					0	0	0.000781405	0	0
MGAT3	4248	broad.mit.edu	37	22	39883656	39883656	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr22:39883656G>A	uc003axv.3	+	2	543	c.304G>A	c.(304-306)GAG>AAG	p.E102K	MGAT3_uc010gxy.2_Missense_Mutation_p.E102K	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	102	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GGTGCTGCCCGAGGACACCAC	0.701													21	19					0	0	0.000295444	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657021	46657021	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr22:46657021G>A	uc003bhh.2	-	1	2199	c.2199C>T	c.(2197-2199)CTC>CTT	p.L733L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	733	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GGTGTTTTCGGAGATTGACTC	0.393													58	71					0	0	0.000781405	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50657236	50657236	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr22:50657236C>T	uc003bkb.1	-	21	5229	c.4717G>A	c.(4717-4719)GAC>AAC	p.D1573N	TUBGCP6_uc003bka.1_Missense_Mutation_p.D660N|TUBGCP6_uc010har.1_Missense_Mutation_p.D1565N|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1573					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGCGGGGTGTCCCCATGCAGG	0.642													19	28					0	0	0.00047179	0	0
CNTN4	152330	broad.mit.edu	37	3	2942419	2942419	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:2942419G>A	uc003bpc.2	+	10	1212	c.991G>A	c.(991-993)GAA>AAA	p.E331K	CNTN4_uc003bpb.1_Missense_Mutation_p.E3K|CNTN4_uc003bpd.1_Missense_Mutation_p.E331K|CNTN4_uc003bpe.2_Missense_Mutation_p.E3K|CNTN4_uc003bpf.2_Missense_Mutation_p.E3K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	331	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GGCCATGGAAGAAAATGTCTT	0.378													24	0					0	0	0.000586117	0	0
ANKRD28	23243	broad.mit.edu	37	3	15711867	15711867	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:15711867G>A	uc003caj.1	-	28	3215	c.3072C>T	c.(3070-3072)TCC>TCT	p.S1024S	ANKRD28_uc003cai.1_Silent_p.S870S|ANKRD28_uc011avz.1_Silent_p.S870S|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011avy.1_Silent_p.S104S	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	1024						nucleoplasm	protein binding			breast(1)	1						AACTGCAATAGGAGCTAGGTT	0.438													77	4					0	0	0.000781405	0	0
SCN10A	6336	broad.mit.edu	37	3	38793949	38793949	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:38793949G>A	uc003ciq.2	-	11	1516	c.1516C>T	c.(1516-1518)CAT>TAT	p.H506Y		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	506					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GACCGGAAATGGAACACACTG	0.567													9	0					0	0	0.000673444	0	0
BSN	8927	broad.mit.edu	37	3	49689992	49689992	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:49689992C>T	uc003cxe.3	+	5	3117	c.3003C>T	c.(3001-3003)TCC>TCT	p.S1001S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1001					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTCTGTCCTCCCTAGAGGAGG	0.667													21	1					0	0	0.00047179	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50415234	50415234	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:50415234C>T	uc003daq.2	-	16	1518	c.1480G>A	c.(1480-1482)GGA>AGA	p.G494R	CACNA2D2_uc003dap.2_Missense_Mutation_p.G494R	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	494	Cache.|Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	AACCCCAGTCCCTGAAGGGAG	0.587													34	0					0	0	0.00058488	0	0
CBLB	868	broad.mit.edu	37	3	105404212	105404212	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:105404212G>A	uc003dwc.2	-	14	2475	c.2153C>T	c.(2152-2154)TCC>TTC	p.S718F	CBLB_uc011bhi.1_Missense_Mutation_p.S740F|CBLB_uc003dwd.1_Missense_Mutation_p.S718F|CBLB_uc003dwe.1_Missense_Mutation_p.S718F	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	718	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						TGAATTCAGGGAAACAGGGTG	0.403			Mis S		AML								31	0					0	0	0.000339439	0	0
CASR	846	broad.mit.edu	37	3	122003273	122003273	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:122003273C>T	uc003eev.3	+	7	2844	c.2472C>T	c.(2470-2472)GCC>GCT	p.A824A	CASR_uc003eew.3_Silent_p.A834A	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	824	Helical; Name=6; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCATTCCAGCCTATGCCAGCA	0.512													55	3					0	0	0.000781405	0	0
AMOTL2	51421	broad.mit.edu	37	3	134079079	134079079	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:134079079C>T	uc003eqf.2	-	7	2043	c.1926G>A	c.(1924-1926)ATG>ATA	p.M642I	AMOTL2_uc003eqg.1_Missense_Mutation_p.M584I|AMOTL2_uc003eqh.1_Missense_Mutation_p.M582I|AMOTL2_uc003eqe.1_Missense_Mutation_p.M209I	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	584										large_intestine(1)	1						CAGCCGCATCCATGGCAAACT	0.597													15	1					0	0	0.000566183	0	0
PLCH1	23007	broad.mit.edu	37	3	155210562	155210562	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:155210562G>A	uc011bok.1	-	17	2504	c.2227C>T	c.(2227-2229)CAA>TAA	p.Q743*	PLCH1_uc011boj.1_Nonsense_Mutation_p.Q743*|PLCH1_uc011bol.1_Nonsense_Mutation_p.Q725*	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	743	C2.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTGGGGAGTTGCTGTCCACTG	0.453													34	2					0	0	0.000692331	0	0
PLCH1	23007	broad.mit.edu	37	3	155211994	155211994	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:155211994G>A	uc011bok.1	-	16	2359	c.2082C>T	c.(2080-2082)AAC>AAT	p.N694N	PLCH1_uc011boj.1_Silent_p.N694N|PLCH1_uc011bol.1_Silent_p.N676N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	694	PI-PLC Y-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			ATTTGGCTCGGTTTAACTGCA	0.413													34	0					0	0	0.000814825	0	0
NMD3	51068	broad.mit.edu	37	3	160942812	160942813	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:160942812_160942813CC>TT	uc003feb.1	+	3	258_259	c.139_140CC>TT	c.(139-141)CCG>TTG	p.P47L	NMD3_uc003fec.2_Missense_Mutation_p.P47L|NMD3_uc003fed.1_Missense_Mutation_p.P47L	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	47					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			CCAAGGTATTCCGAAACAAGTC	0.411													66	3					0	0	6.4e-05	0	0
ATP13A4	84239	broad.mit.edu	37	3	193176911	193176911	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:193176911C>T	uc003ftd.2	-	14	1741	c.1633G>A	c.(1633-1635)GGA>AGA	p.G545R	ATP13A4_uc003fte.1_Missense_Mutation_p.G545R|ATP13A4_uc011bsr.1_Missense_Mutation_p.G16R|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Missense_Mutation_p.G251R	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	545	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGAGGGTCTCCCTGGATGGTC	0.547													49	4					0	0	0.000781405	0	0
MUC4	4585	broad.mit.edu	37	3	195505842	195505842	+	Silent	SNP	T	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:195505842T>G	uc011bto.1	-	3	12685	c.12225A>C	c.(12223-12225)ACA>ACC	p.T4075T	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGGCGTGACCTGTGGATGCTG	0.597													2	0					0	0	6.4e-05	0	0
MUC4	4585	broad.mit.edu	37	3	195505851	195505851	+	Silent	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr3:195505851T>C	uc011bto.1	-	3	12676	c.12216A>G	c.(12214-12216)TCA>TCG	p.S4072S	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	963	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CTGTGGATGCTGAGGAAGTGT	0.592													2	0					0	0	6.4e-05	0	0
CLRN2	645104	broad.mit.edu	37	4	17524612	17524612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:17524612C>T	uc003gpg.1	+	2	481	c.379C>T	c.(379-381)CCG>TCG	p.P127S		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	127						integral to membrane					0						GATCCAGGTCCCGTACCGGGC	0.547													26	40					0	0	0.000720815	0	0
GUF1	60558	broad.mit.edu	37	4	44693752	44693752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:44693752C>T	uc003gww.3	+	13	1756	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S		NM_021927	NP_068746	Q8N442	GUF1_HUMAN	GUF1 GTPase homolog	517					translation	mitochondrial inner membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1						ATATCTCTTTCCTTTGAATGA	0.318													61	68					0	0	0.000781405	0	0
KDR	3791	broad.mit.edu	37	4	55972009	55972009	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:55972009G>A	uc003has.2	-	12	1937	c.1635C>T	c.(1633-1635)TTC>TTT	p.F545F	KDR_uc003hat.1_Silent_p.F545F|KDR_uc011bzx.1_Silent_p.F545F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	545	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TGGTCACGTGGAAGGAGATCA	0.463			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			65	68					0	0	0.000781405	0	0
CEP135	9662	broad.mit.edu	37	4	56885642	56885642	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:56885642C>T	uc003hbi.2	+	23	3370	c.3136C>T	c.(3136-3138)CAT>TAT	p.H1046Y	CEP135_uc003hbj.2_Missense_Mutation_p.H752Y	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	1046					centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					TAAAGAATTTCATTCTCACTT	0.358													23	20					0	0	0.000375601	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68795709	68795709	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:68795709G>A	uc003hdr.1	-	5	500	c.379C>T	c.(379-381)CCC>TCC	p.P127S	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.P124S	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	127	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TCAGTAGAGGGGAACTGGAAC	0.388													45	41					0	0	0.000781405	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962467	69962467	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:69962467T>C	uc003heg.3	+	1	275	c.229T>C	c.(229-231)TAT>CAT	p.Y77H	UGT2B7_uc010ihq.2_Missense_Mutation_p.Y77H	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	77					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AATTGAAATTTATCCCACATC	0.368													30	38					0	0	0.000279167	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361117	70361117	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:70361117G>A	uc003hek.3	-	1	510	c.463C>T	c.(463-465)CCC>TCC	p.P155S	UGT2B4_uc011cap.1_Missense_Mutation_p.P19S|UGT2B4_uc003hel.3_Missense_Mutation_p.P155S	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	155					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TCACCAAAGGGGAAAACAGCA	0.408													10	14					0	0	0.000442599	0	0
ENAM	10117	broad.mit.edu	37	4	71508317	71508317	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:71508317C>T	uc011caw.1	+	9	1455	c.1174C>T	c.(1174-1176)CCC>TCC	p.P392S		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	392					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGGCAATTATCCCAATTATGC	0.473													63	77					0	0	0.000781405	0	0
SLC4A4	8671	broad.mit.edu	37	4	72263331	72263331	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:72263331C>T	uc003hfy.2	+	7	885	c.768C>T	c.(766-768)TCC>TCT	p.S256S	SLC4A4_uc010iic.2_Silent_p.S256S|SLC4A4_uc010iib.2_Silent_p.S256S|SLC4A4_uc003hfz.2_Silent_p.S256S|SLC4A4_uc003hgc.3_Silent_p.S212S|SLC4A4_uc003hga.2_Silent_p.S134S|SLC4A4_uc003hgb.3_Silent_p.S212S	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	256	Cytoplasmic (Potential).			S -> F (in Ref. 3; AAD42020).		basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGACTTCCTCCAGTCTGAATG	0.383													27	36					0	0	0.000339439	0	0
ALB	213	broad.mit.edu	37	4	74270068	74270068	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:74270068C>T	uc003hgs.3	+	1	97	c.24C>T	c.(22-24)TCC>TCT	p.S8S	ALB_uc003hgw.3_Silent_p.S8S|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Silent_p.S8S|ALB_uc010iii.2_Silent_p.S8S|ALB_uc003hgu.3_5'UTR|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	8					bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	CCTTTATTTCCCTTCTTTTTC	0.398													35	52					0	0	0.000270559	0	0
FRAS1	80144	broad.mit.edu	37	4	79399090	79399090	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:79399090G>A	uc003hlb.2	+	55	8413	c.7973G>A	c.(7972-7974)GGG>GAG	p.G2658E		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2653	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCCCTGTTAGGGGAATTCACC	0.468													6	6					0	0	8.12818e-05	0	0
FBXW7	55294	broad.mit.edu	37	4	153247170	153247170	+	Silent	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:153247170G>C	uc003ims.2	-	10	1781	c.1632C>G	c.(1630-1632)GTC>GTG	p.V544V	FBXW7_uc011cii.1_Silent_p.V544V|FBXW7_uc003imt.2_Silent_p.V544V|FBXW7_uc011cih.1_Silent_p.V368V|FBXW7_uc003imq.2_Silent_p.V464V|FBXW7_uc003imr.2_Silent_p.V426V	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	544	WD 5.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GTAATGAATAGACTCTATTAG	0.408			Mis|N|D|F		colorectal|endometrial|T-ALL								35	2					0	0	0.00111076	0	0
FBXW7	55294	broad.mit.edu	37	4	153247304	153247304	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:153247304G>A	uc003ims.2	-	10	1647	c.1498C>T	c.(1498-1500)CAT>TAT	p.H500Y	FBXW7_uc011cii.1_Missense_Mutation_p.H500Y|FBXW7_uc003imt.2_Missense_Mutation_p.H500Y|FBXW7_uc011cih.1_Missense_Mutation_p.H324Y|FBXW7_uc003imq.2_Missense_Mutation_p.H420Y|FBXW7_uc003imr.2_Missense_Mutation_p.H382Y	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	500	WD 4.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.H500N(1)|p.H420N(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GCTGCAACATGACCCATCAAA	0.463			Mis|N|D|F		colorectal|endometrial|T-ALL								47	0					0	0	0.000781405	0	0
ACCN5	51802	broad.mit.edu	37	4	156775294	156775294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:156775294C>T	uc003ipe.1	-	3	567	c.520G>A	c.(520-522)GGT>AGT	p.G174S		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	174	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		AGATAAAAACCTTTGTTCCTG	0.368													5	2					0	0	3.59834e-05	0	0
TRIM60	166655	broad.mit.edu	37	4	165961274	165961274	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:165961274C>T	uc003iqy.1	+	3	220	c.50C>T	c.(49-51)CCC>CTC	p.P17L	TRIM60_uc010iqx.1_Missense_Mutation_p.P17L	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	17	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		TCTAGCTGTCCCATCTGTCTG	0.502													35	33					0	0	0.000953801	0	0
MORF4	10934	broad.mit.edu	37	4	174537400	174537401	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:174537400_174537401CC>AA	uc011cke.1	-	1	394_395	c.394_395GG>TT	c.(394-396)GGG>TTG	p.G132L		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTCTTTTATCCCTGCCACAACT	0.411													9	279					0	0	6.4e-05	0	0
AGA	175	broad.mit.edu	37	4	178360783	178360783	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr4:178360783A>T	uc003iuu.1	-	3	403	c.341T>A	c.(340-342)GTG>GAG	p.V114E	AGA_uc003iuv.1_Missense_Mutation_p.V18E|AGA_uc003iuw.2_Missense_Mutation_p.V18E	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	114					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		TTTCCGTGCCACACCAATAGC	0.363													120	180					0	0	0.000781405	0	0
SLC9A3	6550	broad.mit.edu	37	5	480074	480074	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:480074G>A	uc003jbe.2	-	10	1636	c.1524C>T	c.(1522-1524)TCC>TCT	p.S508S	SLC9A3_uc011clx.1_Silent_p.S499S|uc011cly.1_RNA	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	508	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			TGTCGAAGTGGGACCACCTGT	0.607													39	0					0	0	0.000781405	0	0
DNAH5	1767	broad.mit.edu	37	5	13781030	13781030	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:13781030G>A	uc003jfd.2	-	53	8901	c.8859C>T	c.(8857-8859)CTC>CTT	p.L2953L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2953	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCCGACCAGGAGGGCATTTC	0.458									Kartagener_syndrome				10	2					0	0	0.000442599	0	0
ESM1	11082	broad.mit.edu	37	5	54281137	54281137	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:54281137G>A	uc003jpk.2	-	1	278	c.209C>T	c.(208-210)TCA>TTA	p.S70L	ESM1_uc010ivt.2_Missense_Mutation_p.S70L	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	70	IGFBP N-terminal.				angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			ATCCATGCCTGAGACTGTGCG	0.577													23	2					0	0	0.000229342	0	0
GPR98	84059	broad.mit.edu	37	5	90074406	90074406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:90074406C>T	uc003kju.2	+	63	12925	c.12829C>T	c.(12829-12831)CGA>TGA	p.R4277*	GPR98_uc003kjt.2_Nonsense_Mutation_p.R1983*|GPR98_uc003kjw.2_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4277	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGAGCAACTTCGAGTGTCAGA	0.413													10	0					0	0	0.000978159	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248790	140248790	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:140248790C>T	uc003lia.2	+	1	960	c.102C>T	c.(100-102)TCC>TCT	p.S34S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.S34S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	34	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCACTACTCCGTCTCGGAGG	0.647													56	4					0	0	0.000781405	0	0
PCDHB9	56127	broad.mit.edu	37	5	140566947	140566947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:140566947C>T	uc003liw.1	+	1	55	c.55C>T	c.(55-57)CTT>TTT	p.L19F		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	19					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTTCTTTTTCTTTTCTGGGG	0.478													75	2					0	0	0.000781405	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768953	140768953	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:140768953C>T	uc003lkc.1	+	1	1502	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S501F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	501	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGTCATCCTACGTGTCC	0.622													38	6					0	0	0.00111076	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801294	140801294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:140801294C>T	uc003lkq.1	+	1	758	c.500C>T	c.(499-501)TCC>TTC	p.S167F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.S167F|PCDHGA11_uc003lkp.1_Missense_Mutation_p.S167F	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	167	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGTGAACTCCCTCCAGAGC	0.532													16	0					0	0	0.000422831	0	0
HAVCR1	26762	broad.mit.edu	37	5	156469690	156469691	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr5:156469690_156469691CC>AA	uc010jij.1	-	6	969_970	c.784_785GG>TT	c.(784-786)GGG>TTG	p.G262L	HAVCR1_uc011ddl.1_Missense_Mutation_p.G93L|HAVCR1_uc003lwi.2_Missense_Mutation_p.G262L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	257	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTGTCATTCCCATCTACTCAA	0.347													8	263					0	0	6.4e-05	0	0
SERPINB1	1992	broad.mit.edu	37	6	2833895	2833895	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:2833895G>A	uc003mub.2	-	7	1131	c.1087C>T	c.(1087-1089)CGG>TGG	p.R363W	SERPINB1_uc003muc.2_Missense_Mutation_p.R212W	NM_030666	NP_109591	P30740	ILEU_HUMAN	serine (or cysteine) proteinase inhibitor, clade	363					regulation of proteolysis	cytoplasm|extracellular space	serine-type endopeptidase inhibitor activity			breast(4)|ovary(1)	5	Ovarian(93;0.0412)			OV - Ovarian serous cystadenocarcinoma(45;0.0717)		GAATTATGCCGAATAAAGAAA	0.443													19	26					0	0	0.000175454	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773753	25773753	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:25773753G>A	uc003nfe.2	+	8	957	c.838G>A	c.(838-840)GGC>AGC	p.G280S	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Missense_Mutation_p.G41S|SLC17A4_uc003nfg.2_Missense_Mutation_p.G217S|SLC17A4_uc010jqa.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	280					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CTGTTCACCAGGCTGGTCTCT	0.453													10	11					0	0	0.000978159	0	0
OR14J1	442191	broad.mit.edu	37	6	29274667	29274667	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:29274667G>A	uc011dln.1	+	1	201	c.201G>A	c.(199-201)CTG>CTA	p.L67L		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCTCTCTTCTGGACCTCTGCT	0.468													100	87					0	0	0.000781405	0	0
GABBR1	2550	broad.mit.edu	37	6	29572298	29572298	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:29572298G>A	uc003nmt.3	-	22	3021	c.2685C>T	c.(2683-2685)AAC>AAT	p.N895N	GABBR1_uc003nmp.3_Silent_p.N778N|GABBR1_uc003nms.3_Silent_p.N778N|GABBR1_uc003nmu.3_Silent_p.N833N|GABBR1_uc011dlr.1_Silent_p.N718N	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	895	Cytoplasmic (Potential).|Potential.|Interaction with ATF4 (By similarity).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	CCAGTTCACGGTTCTCCTTCT	0.527													90	103					0	0	0.000781405	0	0
TRIM15	89870	broad.mit.edu	37	6	30138389	30138389	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:30138389C>T	uc010jrx.2	+	5	1322	c.843C>T	c.(841-843)TTC>TTT	p.F281F		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	281	B30.2/SPRY.				mesodermal cell fate determination	intracellular	zinc ion binding				0						TGAGGATGTTCTCAGGTAAAG	0.517													38	39					0	0	0.000814825	0	0
CDSN	1041	broad.mit.edu	37	6	31083966	31083967	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:31083966_31083967GG>AA	uc003nsm.1	-	2	1452_1453	c.1425_1426CC>TT	c.(1423-1428)CCCCAT>CCTTAT	p.H476Y	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	476					cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						GGATCAGGATGGGGAGAGCCAT	0.594													19	24					0	0	6.4e-05	0	0
CDSN	1041	broad.mit.edu	37	6	31084135	31084135	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:31084135G>A	uc003nsm.1	-	2	1284	c.1257C>T	c.(1255-1257)TCC>TCT	p.S419S	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	419	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGGGGCTCTGGGAAGCACTGC	0.602													9	11					0	0	0.000274275	0	0
EHMT2	10919	broad.mit.edu	37	6	31864150	31864151	+	Nonsense_Mutation	DNP	GG	AA	AA	rs140758887		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:31864150_31864151GG>AA	uc003nxz.1	-	4	481_482	c.471_472CC>TT	c.(469-474)GCCCAG>GCTTAG	p.Q158*	EHMT2_uc003nxy.1_5'UTR|EHMT2_uc011don.1_Nonsense_Mutation_p.Q215*|EHMT2_uc003nya.1_Nonsense_Mutation_p.Q158*|EHMT2_uc003nyb.1_Nonsense_Mutation_p.Q158*|C2_uc003nyc.2_5'Flank|C2_uc011doo.1_5'Flank	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	158					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GCAGCTCCCTGGGCTCCTGGCA	0.604													261	216					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32036847	32036848	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:32036847_32036848CC>AA	uc003nzl.2	-	16	5855_5856	c.5653_5654GG>TT	c.(5653-5655)GGG>TTG	p.G1885L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1967	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGTCAACTCCCCGAGGTGGGGC	0.584													12	497					0	0	6.4e-05	0	0
COL11A2	1302	broad.mit.edu	37	6	33153498	33153499	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:33153498_33153499CC>AA	uc003ocx.1	-	6	1083_1084	c.855_856GG>TT	c.(853-858)ACGGGG>ACTTGG	p.G286W	COL11A2_uc003ocy.1_Intron|COL11A2_uc003ocz.1_Intron	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	286	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGGTTGTCCCCGTAGTCATCA	0.485													7	116					0	0	6.4e-05	0	0
FGD2	221472	broad.mit.edu	37	6	36990132	36990132	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:36990132C>T	uc010jwp.1	+	13	1615	c.1444C>T	c.(1444-1446)CGG>TGG	p.R482W	FGD2_uc003ong.2_Missense_Mutation_p.R204W|FGD2_uc011dtv.1_Missense_Mutation_p.R110W|FGD2_uc003onj.1_Missense_Mutation_p.R59W	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	482	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CCACCACTGCCGGGCCTGCGG	0.667													10	15					0	0	0.000442599	0	0
TREML1	340205	broad.mit.edu	37	6	41119031	41119031	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:41119031C>T	uc011duc.1	-	3	512	c.468G>A	c.(466-468)CAG>CAA	p.Q156Q	TREML1_uc003opx.2_Silent_p.Q156Q|TREML1_uc011dud.1_Silent_p.Q45Q	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	156	Extracellular (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCTTCTCATCCTGGCTGGGTT	0.522													44	58					0	0	0.000781405	0	0
TREML2	79865	broad.mit.edu	37	6	41162337	41162337	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:41162337C>T	uc010jxm.1	-	3	790	c.611G>A	c.(610-612)AGG>AAG	p.R204K		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	204	Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCCCATGGTCCTCCTGGGTCC	0.612													14	18					0	0	0.000219431	0	0
GPR115	221393	broad.mit.edu	37	6	47681964	47681964	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:47681964G>A	uc003oza.1	+	6	1241	c.983G>A	c.(982-984)AGG>AAG	p.R328K	GPR115_uc003oyz.1_Missense_Mutation_p.R385K|GPR115_uc003ozb.1_Missense_Mutation_p.R326K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	328	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TTACCAGAAAGGTTGCAAGAA	0.478													51	45					0	0	0.000781405	0	0
BMP5	653	broad.mit.edu	37	6	55625297	55625297	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:55625297C>T	uc003pcq.2	-	5	1774	c.1062G>A	c.(1060-1062)AAG>AAA	p.K354K	BMP5_uc011dxf.1_Silent_p.K354K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	354					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTTCGTGCTTCTTACAGGCTT	0.353													8	11					0	0	0.000274275	0	0
KIAA1586	57691	broad.mit.edu	37	6	56919413	56919413	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:56919413G>T	uc003pdj.2	+	4	2286	c.2116G>T	c.(2116-2118)GAA>TAA	p.E706*	KIAA1586_uc011dxm.1_Nonsense_Mutation_p.E679*	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	706							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			CAATAGTGCTGAAGCTGAAAG	0.164													14	14					1.05317e-09	1.17165e-08	0.000219431	1	0
COL9A1	1297	broad.mit.edu	37	6	70942291	70942291	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:70942291G>A	uc003pfg.3	-	36	2657	c.2498C>T	c.(2497-2499)CCT>CTT	p.P833L	COL9A1_uc003pfe.3_Missense_Mutation_p.P382L|COL9A1_uc003pff.3_Missense_Mutation_p.P590L	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	833	Triple-helical region (COL1).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CTTACCTTTAGGTCCCCTCAA	0.498													77	101					0	0	0.000781405	0	0
KHDC1	80759	broad.mit.edu	37	6	73919712	73919712	+	RNA	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:73919712G>A	uc011dyl.1	-	8		c.1381C>T						Q4VXA5	KHDC1_HUMAN	Homo sapiens cDNA FLJ30329 fis, clone BRACE2007201.							integral to membrane	RNA binding			skin(1)	1						TCTTCCATGTGAAACACCATT	0.498													21	14					0	0	0.00047179	0	0
EEF1A1	1915	broad.mit.edu	37	6	74227972	74227972	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:74227972G>A	uc003phi.2	-	6	1082	c.1045C>T	c.(1045-1047)CAT>TAT	p.H349Y	EEF1A1_uc003phd.2_Missense_Mutation_p.H74Y|EEF1A1_uc003phe.2_Missense_Mutation_p.H339Y|EEF1A1_uc003phf.2_Missense_Mutation_p.H342Y|EEF1A1_uc003phg.2_Intron|EEF1A1_uc003phh.2_Missense_Mutation_p.H195Y|EEF1A1_uc003phj.2_Missense_Mutation_p.H349Y|EEF1A1_uc003phk.2_Missense_Mutation_p.H349Y|EEF1A1_uc003phl.2_Intron|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	349						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						TGGCCTGGATGGTTCAGGATA	0.428													38	43					0	0	0.000374591	0	0
MDN1	23195	broad.mit.edu	37	6	90422395	90422395	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:90422395G>A	uc003pnn.1	-	48	7445	c.7329C>T	c.(7327-7329)CTC>CTT	p.L2443L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2443					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CAGTAGCAAAGAGAGCTGAGG	0.468													59	60					0	0	0.000781405	0	0
FIG4	9896	broad.mit.edu	37	6	110107591	110107591	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:110107591C>T	uc003ptt.2	+	18	2250	c.2035C>T	c.(2035-2037)CGG>TGG	p.R679W	FIG4_uc011eau.1_Missense_Mutation_p.R402W	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	679					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		TGAGTTCTTTCGGCCATATGA	0.368													44	57					0	0	0.000781405	0	0
SLC16A10	117247	broad.mit.edu	37	6	111540048	111540048	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:111540048C>T	uc003pus.2	+	5	1293	c.1118C>T	c.(1117-1119)TCC>TTC	p.S373F	SLC16A10_uc003put.2_Missense_Mutation_p.S59F	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	373	Cytoplasmic (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		GGTCTGATGTCCATGATGATT	0.483													82	91					0	0	0.000781405	0	0
ENPP1	5167	broad.mit.edu	37	6	132179870	132179870	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:132179870C>T	uc011ecf.1	+	7	798	c.778C>T	c.(778-780)CAC>TAC	p.H260Y	ENPP1_uc003qcy.2_5'Flank	NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	260	Phosphodiesterase.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TTTCCCCAATCACTACAGCAT	0.318													16	25					0	0	0.00074312	0	0
PLAGL1	5325	broad.mit.edu	37	6	144263298	144263299	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:144263298_144263299CG>AT	uc003qjv.2	-	3	1920_1921	c.654_655CG>AT	c.(652-657)ACCGGA>ACATGA	p.G219*	PLAGL1_uc003qjx.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qjy.2_Nonsense_Mutation_p.G219*|PLAGL1_uc010khl.2_Nonsense_Mutation_p.G219*|PLAGL1_uc010khm.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qjz.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qka.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkb.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qkc.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkd.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qke.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkf.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkg.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qkh.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qki.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qkj.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkk.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qkl.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qkm.2_Nonsense_Mutation_p.G219*|PLAGL1_uc010khn.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkn.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qko.2_Nonsense_Mutation_p.G219*|PLAGL1_uc003qkp.2_Nonsense_Mutation_p.G167*|PLAGL1_uc003qjw.2_Nonsense_Mutation_p.G167*	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	219					cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		AGAAGGTCTCCGGTCTGCAAGC	0.559											OREG0017707	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	659					0	0	6.4e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152841609	152841609	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:152841609G>A	uc010kiw.2	-	6	896	c.294C>T	c.(292-294)TTC>TTT	p.F98F	SYNE1_uc003qot.3_Silent_p.F98F|SYNE1_uc003qou.3_Silent_p.F98F|SYNE1_uc010kjb.1_Silent_p.F98F|SYNE1_uc003qpa.1_Silent_p.F98F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	98	Actin-binding.|Cytoplasmic (Potential).|CH 1.			F -> L (in Ref. 2; AAN60442).	cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCCTTCGAGGAACTTGAGTG	0.448										HNSCC(10;0.0054)			46	37					0	0	0.000781405	0	0
PLG	5340	broad.mit.edu	37	6	161132170	161132170	+	Silent	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr6:161132170A>G	uc003qtm.3	+	4	417	c.354A>G	c.(352-354)ACA>ACG	p.T118T		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	118	Kringle 1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGTCCAAAACAAAAAATGGCA	0.418													30	27					0	0	0.00058488	0	0
RNF216	54476	broad.mit.edu	37	7	5662592	5662592	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:5662592G>A	uc003soy.1	-	17	2690	c.2500C>T	c.(2500-2502)CTG>TTG	p.L834L	RNF216_uc010ksz.1_Silent_p.L456L|RNF216_uc010kta.1_Silent_p.L456L|RNF216_uc011jwj.1_Silent_p.L456L|RNF216_uc003sox.1_Silent_p.L891L	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	834	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		ACGTTGGGCAGAGGGGGCACG	0.647													55	55					0	0	0.000781405	0	0
CCDC129	223075	broad.mit.edu	37	7	31683099	31683099	+	Silent	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:31683099C>A	uc003tcj.1	+	11	3108	c.2115C>A	c.(2113-2115)TCC>TCA	p.S705S	CCDC129_uc011kad.1_Silent_p.S715S|CCDC129_uc003tci.1_Silent_p.S556S|CCDC129_uc011kae.1_Silent_p.S731S|CCDC129_uc003tck.1_Silent_p.S613S	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	705											0						CTGGCAGCTCCAGGTCTGTAA	0.537													25	27					3.01185e-09	3.34425e-08	0.000586117	1	0
DPY19L2P1	554236	broad.mit.edu	37	7	35130022	35130022	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:35130022C>T	uc003teq.1	-	21	2270	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GGCAGATTTTCGACTATATGT	0.274													36	54					0	0	0.000692331	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907434	37907434	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:37907434G>A	uc003tfn.2	+	11	1124	c.752G>A	c.(751-753)CGA>CAA	p.R251Q		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	251	NDK 1.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CCTAACGAACGATCTGAGGAT	0.443									Kartagener_syndrome				14	14					0	0	0.000151284	0	0
ZNF479	90827	broad.mit.edu	37	7	57187687	57187687	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:57187687T>C	uc010kzo.2	-	5	1706	c.1435A>G	c.(1435-1437)ACC>GCC	p.T479A		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	479	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TGCATAAGGGTTGAGGAGCAA	0.403													27	16					0	0	0.000184323	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658441	72658441	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:72658441G>A	uc003txs.1	-	13	1471	c.543C>T	c.(541-543)GTC>GTT	p.V181V	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						aattctcatcgacaccacgga	0													34	35					0	0	0.00058488	0	0
HGF	3082	broad.mit.edu	37	7	81388044	81388044	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:81388044C>T	uc003uhl.2	-	3	496	c.331G>A	c.(331-333)GAA>AAA	p.E111K	HGF_uc003uhm.2_Missense_Mutation_p.E111K|HGF_uc003uhn.1_Missense_Mutation_p.E111K|HGF_uc003uho.1_Missense_Mutation_p.E111K|HGF_uc003uhp.2_Missense_Mutation_p.E111K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	111	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TGGCCAAATTCTTTTTTCACT	0.313													48	50					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82763649	82763649	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:82763649G>A	uc003uhx.2	-	3	3506	c.3217C>T	c.(3217-3219)CCT>TCT	p.P1073S	PCLO_uc003uhv.2_Missense_Mutation_p.P1073S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1019	C4-type (Potential).				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGTTAGGAGGATCCTTAGAA	0.408													14	8					0	0	0.000151284	0	0
PCLO	27445	broad.mit.edu	37	7	82784917	82784917	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:82784917C>T	uc003uhx.2	-	2	1329	c.1040G>A	c.(1039-1041)GGG>GAG	p.G347E	PCLO_uc003uhv.2_Missense_Mutation_p.G347E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	320	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCACTGTCCCTGGTTGTTG	0.587													16	14					0	0	0.000308642	0	0
PCLO	27445	broad.mit.edu	37	7	82785023	82785023	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:82785023C>T	uc003uhx.2	-	2	1223	c.934G>A	c.(934-936)GGA>AGA	p.G312R	PCLO_uc003uhv.2_Missense_Mutation_p.G312R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGAGGTTTTCCAGGAGTTGGT	0.527													29	27					0	0	0.000878237	0	0
GNGT1	2792	broad.mit.edu	37	7	93540182	93540182	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:93540182G>A	uc003unc.1	+	3	325	c.177G>A	c.(175-177)GAG>GAA	p.E59E	GNGT1_uc003umx.1_RNA	NM_021955	NP_068774	P63211	GBG1_HUMAN	guanine nucleotide binding protein (G protein),	59					G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0	all_cancers(62;2.39e-10)|all_epithelial(64;1.54e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			GCATCCCAGAGGACAAAAATC	0.378													16	18					0	0	0.000422831	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94919467	94919467	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:94919467T>G	uc003unp.2	+	16	3431	c.3149T>G	c.(3148-3150)ATG>AGG	p.M1050R	PPP1R9A_uc010lfj.2_Missense_Mutation_p.M1326R|PPP1R9A_uc011kif.1_Missense_Mutation_p.M1248R|PPP1R9A_uc003unq.2_Missense_Mutation_p.M1205R|PPP1R9A_uc011kig.1_Missense_Mutation_p.M1042R|PPP1R9A_uc003unr.2_Missense_Mutation_p.M339R	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1050	Interacts with TGN38 (By similarity).|Potential.|SAM.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GAAATGAAGATGTCTCTAGAG	0.423										HNSCC(28;0.073)			12	19					0	0	0.00010058	0	0
ASNS	440	broad.mit.edu	37	7	97493627	97493627	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:97493627G>A	uc003uot.3	-	4	937	c.431C>T	c.(430-432)CCT>CTT	p.P144L	ASNS_uc011kin.1_Missense_Mutation_p.P61L|ASNS_uc003uou.3_Missense_Mutation_p.P144L|ASNS_uc003uov.3_Missense_Mutation_p.P144L|ASNS_uc011kio.1_Missense_Mutation_p.P123L|ASNS_uc003uow.3_Missense_Mutation_p.P123L|ASNS_uc003uox.3_Missense_Mutation_p.P61L	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	144	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TTTAAACAAAGGTCTGACTCC	0.338													35	39					0	0	0.000228196	0	0
LRCH4	4034	broad.mit.edu	37	7	100176342	100176342	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:100176342G>A	uc003uvj.2	-	5	719	c.666C>T	c.(664-666)TCC>TCT	p.S222S	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	222	LRR 8.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCGGCAGAAGGAGACTGGGA	0.637													20	20					0	0	0.000229342	0	0
LAMB4	22798	broad.mit.edu	37	7	107752391	107752391	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:107752391C>A	uc010ljo.1	-	4	277	c.193G>T	c.(193-195)GGG>TGG	p.G65W	LAMB4_uc003vey.2_Missense_Mutation_p.G65W	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	65	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TTTTGTTCCCCCTGGAAAACA	0.343													26	29					2.44723e-14	2.72779e-13	0.000720815	1	0
KCND2	3751	broad.mit.edu	37	7	119914695	119914695	+	Silent	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:119914695G>C	uc003vjj.1	+	1	974	c.9G>C	c.(7-9)GCG>GCC	p.A3A		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	3	Interaction with KCNIP2.|Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCATGGCGGCGGGGGTGGCAG	0.607													78	90					0	0	0.000781405	0	0
GRM8	2918	broad.mit.edu	37	7	126173922	126173922	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:126173922G>A	uc003vlr.2	-	8	1825	c.1514C>T	c.(1513-1515)GCT>GTT	p.A505V	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.A505V|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	505	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TTCTCTATGAGCCCACTGCAT	0.488										HNSCC(24;0.065)			22	25					0	0	0.000295444	0	0
IMPDH1	3614	broad.mit.edu	37	7	128040438	128040438	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:128040438G>A	uc011kol.1	-	5	586	c.480C>T	c.(478-480)TCC>TCT	p.S160S	IMPDH1_uc011kom.1_Silent_p.S155S|IMPDH1_uc003vmt.2_Silent_p.S135S|IMPDH1_uc003vmu.2_Silent_p.S245S|IMPDH1_uc003vmw.2_Silent_p.S235S|IMPDH1_uc011kon.1_Silent_p.S212S|IMPDH1_uc003vmv.2_Silent_p.S209S|IMPDH1_uc003vmx.2_Silent_p.S168S|IMPDH1_uc003vmy.2_Silent_p.S176S	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	160	CBS 1.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	CGATGTCTCGGGAGGTGACGA	0.617													13	10					0	0	0.000151284	0	0
DGKI	9162	broad.mit.edu	37	7	137263039	137263039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:137263039G>A	uc003vtt.2	-	16	1676	c.1675C>T	c.(1675-1677)CGA>TGA	p.R559*	DGKI_uc003vtu.2_Nonsense_Mutation_p.R259*	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	559					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ATTTTATTTCGAAAACGACTG	0.338													29	32					0	0	0.000491102	0	0
ZC3HAV1L	92092	broad.mit.edu	37	7	138713490	138713490	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:138713490T>C	uc003vum.1	-	3	730	c.718A>G	c.(718-720)ACC>GCC	p.T240A		NM_080660	NP_542391	Q96H79	ZCCHL_HUMAN	zinc finger CCCH-type, antiviral 1-like	240											0						TGCTTGTAGGTGGAGATTATC	0.423													37	44					0	0	0.000270559	0	0
PARP12	64761	broad.mit.edu	37	7	139754564	139754564	+	Splice_Site	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:139754564C>T	uc003vvl.1	-	4	1635	c.761_splice	c.e4-1	p.E254_splice	PARP12_uc003vvk.1_Splice_Site_p.E40_splice|PARP12_uc010lnf.1_Splice_Site	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12							nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TCTTTTCTTTCTGCAAAGAAA	0.423													19	31					0	0	0.00074312	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				33	32					0	0	0.000814825	0	0
ZNF777	27153	broad.mit.edu	37	7	149129698	149129698	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:149129698G>A	uc003wfv.2	-	6	1828	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	555	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TCTTCAGGCGGAAGCTCTTGC	0.647													10	14					0	0	0.000978159	0	0
MLL3	58508	broad.mit.edu	37	7	151860294	151860295	+	Nonsense_Mutation	DNP	GG	TT	TT	rs146018427		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:151860294_151860295GG>TT	uc003wla.2	-	43	10586_10587	c.10367_10368CC>AA	c.(10366-10368)TCC>TAA	p.S3456*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S2517*|MLL3_uc003wky.2_Nonsense_Mutation_p.S965*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3456	Gln-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AAGGTAAGTCGGAACTGTAGAA	0.475			N		medulloblastoma								6	165					0	0	6.4e-05	0	0
INSIG1	3638	broad.mit.edu	37	7	155094485	155094485	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:155094485C>T	uc003wly.2	+	5	944	c.733C>T	c.(733-735)CGT>TGT	p.R245C	INSIG1_uc011kvu.1_Missense_Mutation_p.R93C|INSIG1_uc003wlz.2_Silent_p.F147F	NM_005542	NP_005533	O15503	INSI1_HUMAN	insulin induced gene 1 isoform 1	245	Helical; (Potential).				cell proliferation|ER-nuclear sterol response pathway	endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCTATATTCGTTCTTGGCT	0.418													75	100					0	0	0.000781405	0	0
CSMD1	64478	broad.mit.edu	37	8	2976104	2976104	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:2976104C>T	uc011kwk.1	-	42	6640	c.6250G>A	c.(6250-6252)GAA>AAA	p.E2084K	CSMD1_uc011kwj.1_Missense_Mutation_p.E1476K|CSMD1_uc010lrg.2_Missense_Mutation_p.E152K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2084	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCTGTAATTCATAGGCTGAA	0.408													28	33					0	0	0.000227799	0	0
CSMD1	64478	broad.mit.edu	37	8	3205660	3205660	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:3205660C>T	uc011kwk.1	-	22	3721	c.3331G>A	c.(3331-3333)GGA>AGA	p.G1111R	CSMD1_uc011kwj.1_Missense_Mutation_p.G503R|CSMD1_uc003wqe.2_Missense_Mutation_p.G267R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1111	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCTTCATTTCCTTTGACACTT	0.338													15	20					0	0	0.00074312	0	0
RP1L1	94137	broad.mit.edu	37	8	10464964	10464964	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:10464964G>T	uc003wtc.2	-	4	6873	c.6644C>A	c.(6643-6645)CCG>CAG	p.P2215Q		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2215					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTCAGCCTCCGGGGCCTCTAC	0.632													8	212					0.000442599	0.00483101	0.000442599	1	0
RP1L1	94137	broad.mit.edu	37	8	10467361	10467362	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:10467361_10467362GG>TT	uc003wtc.2	-	4	4475_4476	c.4246_4247CC>AA	c.(4246-4248)CCG>AAG	p.P1416K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1416					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTTCCCATCCGGAGAGCTGGCC	0.594													8	497					0	0	6.4e-05	0	0
MSR1	4481	broad.mit.edu	37	8	16021634	16021634	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:16021634C>T	uc003wwz.2	-	5	955	c.757G>A	c.(757-759)GAT>AAT	p.D253N	MSR1_uc010lsu.2_Missense_Mutation_p.D271N|MSR1_uc003wxa.2_Missense_Mutation_p.D253N|MSR1_uc003wxb.2_Missense_Mutation_p.D253N|MSR1_uc011kxz.1_Missense_Mutation_p.D27N	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	253	Potential.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AGTCTGAGATCATTAGTGATG	0.318													19	21					0	0	0.000958276	0	0
PPP3CC	5533	broad.mit.edu	37	8	22355571	22355571	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:22355571C>T	uc003xbs.2	+	4	757	c.430C>T	c.(430-432)CGG>TGG	p.R144W	PPP3CC_uc003xbr.1_Missense_Mutation_p.R144W|PPP3CC_uc011kzi.1_Missense_Mutation_p.R144W|PPP3CC_uc003xbt.2_Missense_Mutation_p.R144W	NM_005605	NP_005596	P48454	PP2BC_HUMAN	protein phosphatase 3, catalytic subunit, gamma	144					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	cytosol	calmodulin binding|metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		Prostate(55;0.104)		BRCA - Breast invasive adenocarcinoma(99;0.00756)|Colorectal(74;0.0238)|COAD - Colon adenocarcinoma(73;0.0835)		GTTTCTGCTTCGGGGAAATCA	0.318													35	45					0	0	0.000781405	0	0
ADAM7	8756	broad.mit.edu	37	8	24324426	24324426	+	Silent	SNP	T	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:24324426T>C	uc003xeb.2	+	6	617	c.504T>C	c.(502-504)TAT>TAC	p.Y168Y	ADAM7_uc003xea.1_Silent_p.Y168Y	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	168	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GTGCCAATTATTCCTGTACAG	0.363													56	42					0	0	0.000781405	0	0
GOLGA7	51125	broad.mit.edu	37	8	41355112	41355112	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:41355112C>T	uc003xnu.2	+	3	274	c.196C>T	c.(196-198)CTC>TTC	p.L66F	GOLGA7_uc003xnv.2_RNA|GOLGA7_uc003xnw.2_Missense_Mutation_p.L66F	NM_016099	NP_057183	Q7Z5G4	GOGA7_HUMAN	golgi autoantigen, golgin subfamily a, 7	66						Golgi membrane				breast(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0234)|Lung SC(25;0.211)	all_lung(54;0.000771)|Lung NSC(58;0.0031)|Hepatocellular(245;0.014)|Esophageal squamous(32;0.0559)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00596)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			CCAGTCATATCTCGAAGGTTG	0.383													121	148					0	0	0.000781405	0	0
HGSNAT	138050	broad.mit.edu	37	8	43037402	43037403	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:43037402_43037403CG>AT	uc003xpx.3	+	11	1175_1176	c.1127_1128CG>AT	c.(1126-1128)TCG>TAT	p.S376Y		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	404	Cytoplasmic (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			CATTGTGCCTCGGTGAGAAACC	0.302													7	369					0	0	6.4e-05	0	0
POTEA	340441	broad.mit.edu	37	8	43147644	43147644	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:43147644C>T	uc003xpz.1	+	1	60	c.17C>T	c.(16-18)TCT>TTT	p.S6F	POTEA_uc003xqa.1_Missense_Mutation_p.S6F	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	6										ovary(1)	1						GCTGAGGTTTCTCCAAAGCTG	0.547													18	17					0	0	0.000958276	0	0
PXDNL	137902	broad.mit.edu	37	8	52370110	52370110	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:52370110G>A	uc003xqu.3	-	9	1031	c.930C>T	c.(928-930)TCC>TCT	p.S310S		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	310	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTTCCCCAGCGGAATTTCTGG	0.433													35	58					0	0	0.00058488	0	0
ARMC1	55156	broad.mit.edu	37	8	66525582	66525582	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:66525582A>T	uc003xvl.2	-	4	597	c.362T>A	c.(361-363)TTT>TAT	p.F121Y	ARMC1_uc011leo.1_Intron	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	121					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			CATCTCATTAAAACTATCACC	0.383													70	57					0	0	0.000781405	0	0
CPA6	57094	broad.mit.edu	37	8	68346383	68346383	+	Nonsense_Mutation	SNP	G	A	A	rs139145929		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:68346383G>A	uc003xxq.3	-	9	1187	c.931C>T	c.(931-933)CGA>TGA	p.R311*	CPA6_uc003xxr.3_Intron	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	311					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			CTGTGTTTTCGAAGGAAGTTA	0.423													38	42					0	0	0.000814825	0	0
PREX2	80243	broad.mit.edu	37	8	69021652	69021652	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:69021652G>A	uc003xxv.1	+	25	2967	c.2940G>A	c.(2938-2940)GGG>GGA	p.G980G	PREX2_uc011lez.1_Silent_p.G915G	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	980					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATTCCTCAGGGAAACTGAGCC	0.408													12	12					0	0	0.00010058	0	0
SULF1	23213	broad.mit.edu	37	8	70541837	70541837	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:70541837G>A	uc010lza.1	+	19	2924	c.2207G>A	c.(2206-2208)GGG>GAG	p.G736E	SULF1_uc003xyd.2_Missense_Mutation_p.G736E|SULF1_uc003xye.2_Missense_Mutation_p.G736E|SULF1_uc003xyf.2_Missense_Mutation_p.G736E|SULF1_uc003xyg.2_Missense_Mutation_p.G736E|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	736					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CAGAGGAAGGGGGAAGAGTGC	0.537													56	53					0	0	0.000781405	0	0
INTS8	55656	broad.mit.edu	37	8	95879562	95879563	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:95879562_95879563CC>AA	uc003yhb.2	+	20	2537_2538	c.2411_2412CC>AA	c.(2410-2412)CCC>CAA	p.P804Q	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P631Q	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	804					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TCTTCCATTCCCAAGTAAGTAG	0.302													14	732					0	0	6.4e-05	0	0
C8orf47	203111	broad.mit.edu	37	8	99101486	99101486	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:99101486G>A	uc003yih.1	+	2	389	c.241G>A	c.(241-243)GAA>AAA	p.E81K		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	81											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			ACCCCTCCAAGAACAGCCCCT	0.527													36	55					0	0	0.000228196	0	0
GRHL2	79977	broad.mit.edu	37	8	102643864	102643864	+	Splice_Site	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:102643864G>A	uc010mbu.2	+	10	1588	c.1258_splice	c.e10-1	p.G420_splice		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3							cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TTTCCTATCAGGGAGCAGAAA	0.433													11	16					0	0	0.000673444	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815111	106815111	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:106815111C>T	uc003ymd.2	+	8	2824	c.2801C>T	c.(2800-2802)TCC>TTC	p.S934F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S665F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	934					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TTATTTTCATCCCACCTAGCA	0.418													10	8					0	0	0.000151284	0	0
CSMD3	114788	broad.mit.edu	37	8	114326961	114326961	+	Silent	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:114326961A>G	uc003ynu.2	-	2	399	c.240T>C	c.(238-240)GGT>GGC	p.G80G	CSMD3_uc003ynt.2_Silent_p.G40G|CSMD3_uc011lhx.1_Silent_p.G80G|CSMD3_uc010mcx.1_Silent_p.G80G|CSMD3_uc003ynx.3_Silent_p.G80G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	80	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATATGGAAAACCAGGGCTTT	0.323										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			64	95					0	0	0.000781405	0	0
FER1L6	654463	broad.mit.edu	37	8	125072474	125072474	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:125072474C>T	uc003yqw.2	+	23	3134	c.2928C>T	c.(2926-2928)ACC>ACT	p.T976T	uc003yqy.1_RNA	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	976	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CAGACATCACCCAGATCTACC	0.572													33	62					0	0	0.000437636	0	0
KHDRBS3	10656	broad.mit.edu	37	8	136619275	136619275	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:136619275C>T	uc003yuv.2	+	7	1279	c.885C>T	c.(883-885)GCC>GCT	p.A295A	KHDRBS3_uc003yuw.2_Intron|KHDRBS3_uc010mek.2_RNA	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	295	Tyr-rich.				regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			GCACCCCAGCCCAAAGGTAAG	0.423													25	24					0	0	0.000720815	0	0
EIF2C2	27161	broad.mit.edu	37	8	141572558	141572558	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:141572558G>A	uc003yvn.2	-	4	552	c.512C>T	c.(511-513)TCC>TTC	p.S171F	EIF2C2_uc010men.2_Missense_Mutation_p.S94F|EIF2C2_uc010meo.2_Missense_Mutation_p.S171F	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	171					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			TCACCTCATGGATGGCAAGTG	0.642													25	32					0	0	0.00106085	0	0
EPPK1	83481	broad.mit.edu	37	8	144940278	144940278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr8:144940278C>T	uc003zaa.1	-	2	15167	c.15154G>A	c.(15154-15156)GAC>AAC	p.D5052N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5052	Plectin 65.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCTTGGTGTCGTCGCTGGGG	0.657													21	389					0	0	0.000878237	0	0
TYRP1	7306	broad.mit.edu	37	9	12694240	12694240	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:12694240G>A	uc003zkv.3	+	2	422	c.244G>A	c.(244-246)GAT>AAT	p.D82N		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	82	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GTATCCCCATGATGGCAGAGA	0.597									Oculocutaneous_Albinism				5	7					0	0	0.000602214	0	0
MPDZ	8777	broad.mit.edu	37	9	13110635	13110635	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:13110635C>T	uc010mhy.2	-	42	5793	c.5742G>A	c.(5740-5742)CAG>CAA	p.Q1914Q	MPDZ_uc003zkx.3_Silent_p.Q138Q|MPDZ_uc003zky.3_Silent_p.Q477Q|MPDZ_uc010mib.2_Silent_p.Q648Q|MPDZ_uc010mhx.2_Silent_p.Q765Q|MPDZ_uc011lmm.1_Silent_p.Q802Q|MPDZ_uc003zkz.3_Silent_p.Q636Q|MPDZ_uc010mhz.2_Silent_p.Q1910Q|MPDZ_uc011lmn.1_Silent_p.Q1881Q|MPDZ_uc003zlb.3_Silent_p.Q1914Q	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1943	PDZ 12.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		AAAATCTTACCTGCATTTCAA	0.398													8	13					0	0	0.000673444	0	0
B4GALT1	2683	broad.mit.edu	37	9	33166892	33166892	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:33166892G>A	uc003zsg.2	-	1	465	c.276C>T	c.(274-276)TCC>TCT	p.S92S		NM_001497	NP_001488	P15291	B4GT1_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	92	Lumenal (Potential).			SSQPRPGGDSSPVVDSGPGPASNLT -> GKHAKSSFKQFL LQIKELSNPIDLD (in Ref. 6; AAA68219).	oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	basolateral plasma membrane|brush border membrane|desmosome|external side of plasma membrane|extracellular region|glycocalyx|Golgi cisterna membrane|Golgi trans cisterna|integral to membrane	alpha-tubulin binding|beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|beta-tubulin binding|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity|protein binding|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(29;0.0084)	GBM - Glioblastoma multiforme(74;0.121)	N-Acetyl-D-glucosamine(DB00141)	GGCGCGGCTGGGAGGAGGCGC	0.741													7	20					0	0	0.000157383	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627436	43627437	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:43627436_43627437CC>AA	uc011lrb.1	-	4	1279_1280	c.1250_1251GG>TT	c.(1249-1251)TGG>TTT	p.W417F		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	417						integral to membrane					0						AGGGGAGGCCCCAGAAAAGCTG	0.495													11	582					0	0	6.4e-05	0	0
PRKACG	5568	broad.mit.edu	37	9	71628009	71628010	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:71628009_71628010CC>TT	uc004agy.2	-	1	1030_1031	c.999_1000GG>AA	c.(997-1002)GAGGAA>GAAAAA	p.E334K		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	334	AGC-kinase C-terminal.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						CGGAGCTCTTCCTCCTCGTAGT	0.5													48	0					0	0	6.4e-05	0	0
SYK	6850	broad.mit.edu	37	9	93636979	93636979	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:93636979G>A	uc004aqz.2	+	9	1234	c.1029G>A	c.(1027-1029)ATG>ATA	p.M343I	SYK_uc004ara.2_Missense_Mutation_p.M320I|SYK_uc004arb.2_Missense_Mutation_p.M320I|SYK_uc004arc.2_Missense_Mutation_p.M343I|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	343	Linker.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CCCTACCCATGGACACAGAGG	0.567			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								69	3					0	0	0.000781405	0	0
PHF2	5253	broad.mit.edu	37	9	96429453	96429453	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:96429453C>T	uc004aub.2	+	17	2426	c.2279C>T	c.(2278-2280)TCG>TTG	p.S760L	PHF2_uc011lug.1_Missense_Mutation_p.S643L|PHF2_uc004auc.2_Missense_Mutation_p.S180L	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	760					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		AGTGGGAGCTCGGCAGCTGGC	0.647													24	1					0	0	0.00047179	0	0
CORO2A	7464	broad.mit.edu	37	9	100892098	100892099	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:100892098_100892099GG>AA	uc004ayl.2	-	8	1210_1211	c.944_945CC>TT	c.(943-945)TCC>TTT	p.S315F	CORO2A_uc004aym.2_Missense_Mutation_p.S315F|CORO2A_uc004ayk.2_5'Flank	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	315					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				GTGGGTTATAGGAGCGGTACTC	0.302													36	4					0	0	6.4e-05	0	0
SVEP1	79987	broad.mit.edu	37	9	113251994	113251994	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:113251994G>A	uc010mtz.2	-	9	2203	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	SVEP1_uc010mua.1_Silent_p.I622I|SVEP1_uc004beu.2_Silent_p.I622I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	622	HYR 1.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCGTGTATACGATAGCAACAT	0.368													9	1					0	0	0.000274275	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407659	1407659	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:1407659G>A	uc010nct.2	+	7	673	c.351G>A	c.(349-351)GAG>GAA	p.E117E	CSF2RA_uc011mhb.1_Silent_p.E117E|CSF2RA_uc004cpq.2_Silent_p.E117E|CSF2RA_uc004cpn.2_Silent_p.E117E|CSF2RA_uc004cpo.2_Silent_p.E117E|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Silent_p.E117E|CSF2RA_uc010ncv.2_Silent_p.E117E|CSF2RA_uc004cpr.2_Silent_p.E117E	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	117	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CAGGAAGGGAGGGTACCGCTG	0.522													140	144					0	0	0.000781405	0	0
CLCN4	1183	broad.mit.edu	37	X	10188760	10188760	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:10188760G>A	uc004csy.3	+	12	2465	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K	CLCN4_uc011mid.1_Missense_Mutation_p.E585K	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	679	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CTTCACGGAGGAACCCCCCGA	0.567													57	79					0	0	0.000781405	0	0
RAI2	10742	broad.mit.edu	37	X	17819307	17819307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:17819307G>A	uc004cyf.2	-	3	1394	c.824C>T	c.(823-825)CCC>CTC	p.P275L	RAI2_uc004cyg.2_Missense_Mutation_p.P275L|RAI2_uc010nfa.2_Missense_Mutation_p.P275L|RAI2_uc004cyh.3_Missense_Mutation_p.P275L|RAI2_uc011miy.1_Missense_Mutation_p.P225L	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	275					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GCCTTTAAAGGGGTGCAGGCC	0.547													95	102					0	0	0.000781405	0	0
PHEX	5251	broad.mit.edu	37	X	22196406	22196407	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:22196406_22196407CC>TT	uc004dah.2	+	14	1702_1703	c.1499_1500CC>TT	c.(1498-1500)GCC>GTT	p.A500V	PHEX_uc011mjr.1_Missense_Mutation_p.A500V|PHEX_uc011mjs.1_Missense_Mutation_p.A403V	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	500	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TTTTCAGAAGCCGACTACTTTG	0.366													21	25					0	0	6.4e-05	0	0
FAM47B	170062	broad.mit.edu	37	X	34962808	34962808	+	Silent	SNP	T	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:34962808T>G	uc004ddi.1	+	1	1878	c.1860T>G	c.(1858-1860)TCT>TCG	p.S620S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	620										ovary(3)|breast(1)	4						CTTACGACTCTGTTAAGACTC	0.403													119	116					0	0	0.000781405	0	0
FAM47C	442444	broad.mit.edu	37	X	37028201	37028201	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:37028201A>G	uc004ddl.1	+	1	1732	c.1718A>G	c.(1717-1719)GAG>GGG	p.E573G		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	573										ovary(3)	3						CTCCGCCCGGAGCCTCCCGAT	0.637													52	61					0	0	0.000781405	0	0
PHF8	23133	broad.mit.edu	37	X	54048724	54048724	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:54048724G>A	uc004dsu.2	-	4	442	c.369C>T	c.(367-369)TTC>TTT	p.F123F	PHF8_uc004dst.2_Silent_p.F87F|PHF8_uc004dsw.2_Silent_p.F87F|PHF8_uc004dsy.2_Silent_p.F87F	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	123					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						GCTCTCTGACGAACGTAGGGC	0.537													73	262					0	0	0.000781405	0	0
FAM120C	54954	broad.mit.edu	37	X	54209119	54209119	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:54209119G>A	uc004dsz.3	-	1	596	c.513C>T	c.(511-513)TTC>TTT	p.F171F	FAM120C_uc011moh.1_Silent_p.F171F|FAM120C_uc004dta.2_Silent_p.F171F	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	171										ovary(1)|central_nervous_system(1)	2						GGCCCCCCGGGAACATGACCA	0.682													12	44					0	0	0.000308642	0	0
WNK3	65267	broad.mit.edu	37	X	54324689	54324690	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:54324689_54324690TT>AA	uc004dtd.1	-	7	1755_1756	c.1316_1317AA>TT	c.(1315-1317)AAA>ATT	p.K439I	WNK3_uc004dtc.1_Missense_Mutation_p.K439I	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	439					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TGTGTTTGCCTTTCAATTTTTT	0.381													34	121					0	0	6.4e-05	0	0
FAM104B	90736	broad.mit.edu	37	X	55185590	55185590	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:55185590G>C	uc004duh.1	-	2	112	c.92C>G	c.(91-93)CCT>CGT	p.P31R	FAM104B_uc004dug.1_Missense_Mutation_p.P31R|FAM104B_uc004dui.3_Missense_Mutation_p.P31R	NM_138362	NP_612371	Q5XKR9	F104B_HUMAN	hypothetical protein LOC90736	31											0						CTGAAAGATAGGGTTTCTCTT	0.378													42	121					0	0	0.000781405	0	0
ZC4H2	55906	broad.mit.edu	37	X	64139977	64139977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:64139977C>T	uc004dvu.2	-	3	470	c.382G>A	c.(382-384)GAG>AAG	p.E128K	ZC4H2_uc004dvv.2_Missense_Mutation_p.E105K|ZC4H2_uc011mov.1_Missense_Mutation_p.E105K|ZC4H2_uc011mow.1_Missense_Mutation_p.E128K|ZC4H2_uc004dvw.1_Missense_Mutation_p.E128K	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	128							metal ion binding|protein binding			ovary(1)	1						GAAAGCTTCTCCTCTTCTTCA	0.488													16	58					0	0	0.000958276	0	0
ZC4H2	55906	broad.mit.edu	37	X	64140043	64140043	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:64140043C>T	uc004dvu.2	-	3	404	c.316G>A	c.(316-318)GAA>AAA	p.E106K	ZC4H2_uc004dvv.2_Missense_Mutation_p.E83K|ZC4H2_uc011mov.1_Missense_Mutation_p.E83K|ZC4H2_uc011mow.1_Missense_Mutation_p.E106K|ZC4H2_uc004dvw.1_Missense_Mutation_p.E106K	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	106							metal ion binding|protein binding			ovary(1)	1						TCCACATGTTCTTTCAGTGGC	0.483													26	119					0	0	0.000720815	0	0
MSN	4478	broad.mit.edu	37	X	64957167	64957167	+	Silent	SNP	C	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:64957167C>G	uc004dwf.2	+	10	1416	c.1218C>G	c.(1216-1218)GCC>GCG	p.A406A		NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	406					leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						TGCTGCAGGCCTCCCGGGACC	0.542			T	ALK	ALCL								10	41					0	0	0.000442599	0	0
ZMYM3	9203	broad.mit.edu	37	X	70472589	70472590	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:70472589_70472590GG>AA	uc004dzh.1	-	2	603_604	c.516_517CC>TT	c.(514-519)TCCCCT>TCTTCT	p.P173S	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.P173S|ZMYM3_uc004dzj.1_Missense_Mutation_p.P173S|ZMYM3_uc011mpu.1_5'Flank|ZMYM3_uc004dzk.3_Missense_Mutation_p.P173S|ZMYM3_uc004dzl.3_Missense_Mutation_p.P173S|ZMYM3_uc004dzm.3_Missense_Mutation_p.P173S	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	173					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					TCCTGCCCAGGGGAGCCCCTTC	0.574													11	70					0	0	6.4e-05	0	0
ZMYM3	9203	broad.mit.edu	37	X	70472882	70472882	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:70472882C>T	uc004dzh.1	-	2	311	c.224G>A	c.(223-225)GGA>GAA	p.G75E	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.G75E|ZMYM3_uc004dzj.1_Missense_Mutation_p.G75E|ZMYM3_uc011mpu.1_5'Flank|ZMYM3_uc004dzk.3_Missense_Mutation_p.G75E|ZMYM3_uc004dzl.3_Missense_Mutation_p.G75E|ZMYM3_uc004dzm.3_Missense_Mutation_p.G75E	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	75					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CTCAGTGGCTCCATCCAGGAC	0.652													28	10					0	0	0.000692331	0	0
NONO	4841	broad.mit.edu	37	X	70518652	70518652	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:70518652G>A	uc004dzo.2	+	12	1977	c.1267G>A	c.(1267-1269)GGA>AGA	p.G423R	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.G423R|NONO_uc004dzp.2_Missense_Mutation_p.G423R|NONO_uc011mpv.1_Missense_Mutation_p.G334R|NONO_uc004dzq.2_Missense_Mutation_p.G292R|ITGB1BP2_uc004dzr.1_5'Flank|ITGB1BP2_uc004dzs.1_5'Flank	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	423					DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					GATGCCGGATGGAACTTTGGG	0.532			T	TFE3	papillary renal cancer								9	31					0	0	0.000422831	0	0
OGT	8473	broad.mit.edu	37	X	70787861	70787861	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:70787861G>A	uc004eaa.1	+	21	3078	c.2861G>A	c.(2860-2862)CGA>CAA	p.R954Q	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.R944Q|OGT_uc004eac.2_Missense_Mutation_p.R815Q|OGT_uc004ead.2_Missense_Mutation_p.R573Q	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	954					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					CTTGCTTCTCGAGTTGCAGCA	0.403													79	301					0	0	0.000781405	0	0
XIST	7503	broad.mit.edu	37	X	73053079	73053079	+	RNA	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:73053079C>T	uc004ebm.1	-	3		c.11567G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTACCTTTTTCTCCAGATAGC	0.383													36	94					0	0	0.000437636	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961170	73961170	+	Silent	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:73961170C>T	uc004eby.2	-	3	3839	c.3222G>A	c.(3220-3222)CCG>CCA	p.P1074P		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1074					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity	p.P1074P(1)		ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TAGGGGTGTCCGGTGGGGACA	0.498													23	69					0	0	0.000720815	0	0
ATRX	546	broad.mit.edu	37	X	76845316	76845317	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:76845316_76845317GG>AA	uc004ecp.3	-	27	6436_6437	c.6204_6205CC>TT	c.(6202-6207)CCCCTT>CCTTTT	p.L2069F	ATRX_uc004ecq.3_Missense_Mutation_p.L2031F|ATRX_uc004eco.3_Missense_Mutation_p.L1854F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2069	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTATAAATAAGGGGTTTATCTT	0.312			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						25	91					0	0	6.4e-05	0	0
ATRX	546	broad.mit.edu	37	X	76938778	76938779	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:76938778_76938779GG>TT	uc004ecp.3	-	9	2201_2202	c.1969_1970CC>AA	c.(1969-1971)CCA>AAA	p.P657K	ATRX_uc004ecq.3_Missense_Mutation_p.P619K|ATRX_uc004eco.3_Missense_Mutation_p.P442K|ATRX_uc004ecr.2_Missense_Mutation_p.P589K|ATRX_uc010nlx.1_Missense_Mutation_p.P628K|ATRX_uc010nly.1_Missense_Mutation_p.P602K	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	657					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CTTTACACGTGGGGATCTTCGA	0.376			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						11	468					0	0	6.4e-05	0	0
KLHL4	56062	broad.mit.edu	37	X	86869004	86869004	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:86869004G>A	uc004efb.2	+	2	729	c.547G>A	c.(547-549)GAT>AAT	p.D183N	KLHL4_uc004efa.2_Missense_Mutation_p.D183N	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	183	BTB.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ACAACTATGTGATGTGCTACT	0.398													16	47					0	0	0.000422831	0	0
TAF7L	54457	broad.mit.edu	37	X	100547940	100547941	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:100547940_100547941GG>TT	uc004ehb.2	-	1	105_106	c.93_94CC>AA	c.(91-96)CCCCAA>CCAAAA	p.Q32K	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	32					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						ACAAGAATTTGGGGTTCTTGTT	0.53													17	816					0	0	6.4e-05	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911287	100911287	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:100911287G>A	uc004eid.2	-	3	1643	c.1288C>T	c.(1288-1290)CTC>TTC	p.L430F	ARMCX2_uc004eie.3_Missense_Mutation_p.L430F|ARMCX2_uc004eif.3_Missense_Mutation_p.L430F|ARMCX2_uc004eig.3_Missense_Mutation_p.L430F|ARMCX2_uc010nnt.2_Missense_Mutation_p.L430F	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	430	ARM 2.					integral to membrane	binding			ovary(6)	6						ATAATTGGGAGGCCTCCCAAT	0.398													69	260					0	0	0.000781405	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910948	101910948	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:101910948A>G	uc004ejj.3	+	5	2908	c.2107A>G	c.(2107-2109)ATT>GTT	p.I703V	GPRASP1_uc004eji.3_Missense_Mutation_p.I703V|GPRASP1_uc010nod.2_Missense_Mutation_p.I703V	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	703	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						GGAAGAGGACATTGTCAATTC	0.473													256	92					0	0	0.000781405	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864356	102864356	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:102864356C>T	uc004ekq.2	+	3	626	c.364C>T	c.(364-366)CCC>TCC	p.P122S	TCEAL3_uc004ekr.2_Missense_Mutation_p.P122S	NM_001006933	NP_001006934	Q969E4	TCAL3_HUMAN	transcription elongation factor A (SII)-like 3	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GGACGATTCCCCCAAGGACTC	0.552													88	276					0	0	0.000781405	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106093294	106093295	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:106093294_106093295GG>TT	uc004emo.2	+	12	2042_2043	c.1877_1878GG>TT	c.(1876-1878)AGG>ATT	p.R626I	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	626	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GAACTTATCAGGGATCACCTTC	0.376													7	184					0	0	6.4e-05	0	0
ATG4A	115201	broad.mit.edu	37	X	107393483	107393484	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:107393483_107393484CC>AA	uc004enr.2	+	10	1039_1040	c.916_917CC>AA	c.(916-918)CCA>AAA	p.P306K	ATG4A_uc004ent.2_Missense_Mutation_p.P244K|ATG4A_uc004ens.2_Missense_Mutation_p.P222K|ATG4A_uc011msl.1_Missense_Mutation_p.P160K|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.P222K|COL4A6_uc011msm.1_Intron	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	306					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						CCTGCAGTCCCCACAGCGAATG	0.49													14	392					0	0	6.4e-05	0	0
COL4A6	1288	broad.mit.edu	37	X	107415699	107415699	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:107415699C>A	uc004enw.3	-	32	3308	c.3205G>T	c.(3205-3207)GGA>TGA	p.G1069*	COL4A6_uc004env.3_Nonsense_Mutation_p.G1068*|COL4A6_uc011msn.1_Nonsense_Mutation_p.G1068*|COL4A6_uc010npk.2_Nonsense_Mutation_p.G1068*	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1069	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TGCTCCTTACCTTTCAGGCCT	0.418									Alport_syndrome_with_Diffuse_Leiomyomatosis				88	249					1.63549e-45	1.85153e-44	0.000781405	1	0
IRS4	8471	broad.mit.edu	37	X	107976143	107976144	+	Missense_Mutation	DNP	CG	AT	AT	rs45602935		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:107976143_107976144CG>AT	uc004eoc.2	-	1	3464_3465	c.3431_3432CG>AT	c.(3430-3432)CCG>CAT	p.P1144H		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1144	Ala-rich.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CGCCGATGCCCGGGGCTGCGGC	0.649													6	163					0	0	6.4e-05	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684650	108684651	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:108684650_108684651GG>TT	uc004eod.3	-	7	1906_1907	c.1630_1631CC>AA	c.(1630-1632)CCA>AAA	p.P544K	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	544	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						GGAGAGTCTTGGGGACCTCCCA	0.426													11	412					0	0	6.4e-05	0	0
AMOT	154796	broad.mit.edu	37	X	112033944	112033944	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:112033944G>A	uc004epr.2	-	7	1993	c.1993C>T	c.(1993-1995)CGG>TGG	p.R665W	AMOT_uc004eps.2_Missense_Mutation_p.R256W	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	665	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						TCTTTCTCCCGAAGGAGCTCC	0.498													60	236					0	0	0.000781405	0	0
SLC6A14	11254	broad.mit.edu	37	X	115569005	115569005	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:115569005G>A	uc004eqi.2	+	2	200	c.96G>A	c.(94-96)GAG>GAA	p.E32E	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	32	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AAAATGATGAGAATCAGGACC	0.393													82	257					0	0	0.000781405	0	0
DOCK11	139818	broad.mit.edu	37	X	117700054	117700054	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:117700054G>A	uc004eqp.2	+	8	843	c.780G>A	c.(778-780)ATG>ATA	p.M260I	DOCK11_uc004eqq.2_Missense_Mutation_p.M26I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	260	PH.				blood coagulation	cytosol	GTP binding			ovary(3)	3						AGCAGGAAATGGAGGAATGGT	0.398													74	330					0	0	0.000781405	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960162	117960162	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:117960162C>T	uc004equ.2	+	4	1428	c.955C>T	c.(955-957)CCT>TCT	p.P319S		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	319					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						GGCTCAGTTTCCTTCCACCAG	0.547													67	269					0	0	0.000781405	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299827	125299827	+	Silent	SNP	A	G	G			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:125299827A>G	uc004euk.1	-	1	108	c.81T>C	c.(79-81)GGT>GGC	p.G27G		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	27										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCGCCGCTAAACCCTGCGACG	0.687													18	17					0	0	0.000132079	0	0
UTP14A	10813	broad.mit.edu	37	X	129045770	129045770	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:129045770C>T	uc004euz.2	+	6	438	c.410C>T	c.(409-411)ACC>ATC	p.T137I	UTP14A_uc011mup.1_Intron|UTP14A_uc011muq.1_Missense_Mutation_p.T83I	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	137					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						TTCAATAAAACCGCACAAGTC	0.498													116	116					0	0	0.000781405	0	0
USP26	83844	broad.mit.edu	37	X	132161000	132161000	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:132161000G>A	uc010nrm.1	-	6	1719	c.1249C>T	c.(1249-1251)CCT>TCT	p.P417S	USP26_uc011mvf.1_Missense_Mutation_p.P417S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	417					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ACCTGTTTAGGAAAATTATCT	0.368													21	26					0	0	0.000229342	0	0
CT45A5	441521	broad.mit.edu	37	X	134948156	134948156	+	Splice_Site	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:134948156C>T	uc004eze.2	-	3	415	c.170_splice	c.e3-1	p.K57_splice	CT45A5_uc011mvu.1_Splice_Site_p.K57_splice	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5												0						GTCATAAGCTCTGGTGAAACA	0.428													235	279					0	0	0.000781405	0	0
GPR112	139378	broad.mit.edu	37	X	135430654	135430654	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:135430654C>T	uc004ezu.1	+	6	5080	c.4789C>T	c.(4789-4791)CCC>TCC	p.P1597S	GPR112_uc010nsb.1_Missense_Mutation_p.P1392S|GPR112_uc010nsc.1_Missense_Mutation_p.P1364S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1597	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTCAGTTACCCCCAGGACTAC	0.413													9	23					0	0	0.000442599	0	0
GABRA3	2556	broad.mit.edu	37	X	151336724	151336724	+	Silent	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:151336724G>A	uc010ntk.1	-	10	1695	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	485					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCATGCCCTTGATAGCTGACT	0.522													16	67					0	0	0.000566183	0	0
CETN2	1069	broad.mit.edu	37	X	151998261	151998261	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:151998261C>T	uc004fgq.2	-	2	94	c.47G>A	c.(46-48)CGA>CAA	p.R16Q	CETN2_uc004fgr.2_5'UTR|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	16	Required for self-assembly.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CATTCTTTTTCGCTGAGAACT	0.408								Direct_reversal_of_damage|NER					63	203					0	0	0.000781405	0	0
NSDHL	50814	broad.mit.edu	37	X	152037407	152037408	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:152037407_152037408CC>TT	uc004fgt.1	+	9	1130_1131	c.869_870CC>TT	c.(868-870)GCC>GTT	p.A290V	NSDHL_uc004fgs.1_Missense_Mutation_p.A290V	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	290					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	AATTATGAGGCCCCCAAGTACC	0.554													74	331					0	0	6.4e-05	0	0
HAUS7	55559	broad.mit.edu	37	X	152722006	152722006	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:152722006G>A	uc004fho.1	-	6	1138	c.580C>T	c.(580-582)CCG>TCG	p.P194S	HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA|HAUS7_uc004fhn.1_Missense_Mutation_p.P194S|HAUS7_uc004fhp.1_RNA|HAUS7_uc011myq.1_RNA	NM_017518	NP_059988	Q99871	HAUS7_HUMAN	HAUS augmin-like complex subunit 7	194					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleolus|plasma membrane|spindle	thioesterase binding				0						AGGGGCCACGGGTCGCACTCT	0.622													11	4					0	0	0.000978159	0	0
EMD	2010	broad.mit.edu	37	X	153608125	153608125	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:153608125C>T	uc004fkl.2	+	2	406	c.158C>T	c.(157-159)TCG>TTG	p.S53L		NM_000117	NP_000108	P50402	EMD_HUMAN	emerin	53	Interaction with F-actin (Probable).				cellular response to growth factor stimulus|muscle contraction|muscle organ development|negative regulation of catenin import into nucleus|negative regulation of fibroblast proliferation|positive regulation of protein export from nucleus|regulation of canonical Wnt receptor signaling pathway	endoplasmic reticulum|integral to membrane|microtubule|nuclear inner membrane|nuclear outer membrane	actin binding|beta-tubulin binding				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCCCCCAGCTCGTCCGCCGCC	0.672													31	88					0	0	0.000409698	0	0
CTAG2	30848	broad.mit.edu	37	X	153880762	153880762	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:153880762C>A	uc004fmi.1	-	2	466	c.413G>T	c.(412-414)CGG>CTG	p.R138L	CTAG2_uc004fmh.1_Intron	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	138				R -> W (in Ref. 1; CAA11117).		centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTCCTGGTCCCGAACTGACAT	0.647													37	172					1.52319e-26	1.71767e-25	0.000374591	1	0
F8	2157	broad.mit.edu	37	X	154182265	154182265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:154182265C>T	uc004fmt.2	-	12	1976	c.1805G>A	c.(1804-1806)CGA>CAA	p.R602Q		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	602	F5/8 type A 2.|Plastocyanin-like 4.		R -> G (in HEMA; mild familial).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTACCAGCTTCGGTTCTCATC	0.423													117	411					0	0	0.000781405	0	0
TRPT1	83707	broad.mit.edu	37	11	63993265	63993265	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr11:63993265delC	uc001nyo.2	-	2	282	c.68delG	c.(67-69)CGAfs	p.R23fs	TRPT1_uc010rnc.1_Frame_Shift_Del_p.R23fs|TRPT1_uc010rnd.1_Frame_Shift_Del_p.R23fs|TRPT1_uc001nyn.2_Intron|TRPT1_uc010rne.1_Frame_Shift_Del_p.R23fs|TRPT1_uc010rnf.1_Frame_Shift_Del_p.R23fs|NUDT22_uc009ypd.2_5'Flank|NUDT22_uc001nyp.3_5'Flank|NUDT22_uc009ype.2_5'Flank|NUDT22_uc001nyq.3_5'Flank|NUDT22_uc010rng.1_5'Flank	NM_001033678	NP_001028850	Q86TN4	TRPT1_HUMAN	tRNA phosphotransferase 1 isoform 1	23							tRNA 2'-phosphotransferase activity				0						CACCTGTTCTCGGGGTCTGGG	0.657													2	4	---	---	---	---					
TMEM5	10329	broad.mit.edu	37	12	64202671	64202676	+	In_Frame_Del	DEL	GTCCAT	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr12:64202671_64202676delGTCCAT	uc001srq.1	+	6	1235_1240	c.1131_1136delGTCCAT	c.(1129-1137)AAGTCCATG>AAG	p.SM378del	TMEM5_uc001srr.1_In_Frame_Del_p.SM275del|TMEM5_uc001srs.1_In_Frame_Del_p.SM118del	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	378_379	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		AGTTACTCAAGTCCATGGGTGCTCCC	0.427													42	51	---	---	---	---					
BLM	641	broad.mit.edu	37	15	91304286	91304288	+	In_Frame_Del	DEL	TGA	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr15:91304286_91304288delTGA	uc002bpr.2	+	7	1780_1782	c.1683_1685delTGA	c.(1681-1686)TTTGAT>TTT	p.D566del	BLM_uc010uqh.1_In_Frame_Del_p.D566del|BLM_uc010uqi.1_In_Frame_Del_p.D191del|BLM_uc010bnx.2_In_Frame_Del_p.D566del|BLM_uc002bps.1_In_Frame_Del_p.D128del	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	566	Poly-Asp.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TAGATGACTTTGATGATGATGAT	0.374			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				8	807	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													4	8	---	---	---	---					
SALL3	27164	broad.mit.edu	37	18	76753035	76753035	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr18:76753035delG	uc002lmt.2	+	2	1044	c.1044delG	c.(1042-1044)CCGfs	p.P348fs	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	348					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CCCTGGCCCCGGGGTCCCTGC	0.562													2	4	---	---	---	---					
STRN4	29888	broad.mit.edu	37	19	47234012	47234013	+	Frame_Shift_Ins	INS	-	CA	CA			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr19:47234012_47234013insCA	uc002pfl.2	-	6	888_889	c.855_856insTG	c.(853-858)GTGCAGfs	p.V285fs	STRN4_uc002pfm.2_Frame_Shift_Ins_p.V285fs|STRN4_uc010xyf.1_RNA|STRN4_uc010xyg.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	285_286						cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		TTCTTGTGCTGCACGCTGTCCA	0.629													43	48	---	---	---	---					
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	Frame_Shift_Del	DEL	AGAGCTCC	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr7:74300557_74300564delAGAGCTCC	uc003ubj.3	-	5	625_632	c.243_250delGGAGCTCT	c.(241-252)CTGGAGCTCTTCfs	p.L81fs	STAG3L2_uc011kfj.1_RNA	NM_001025202	NP_001020373	P0CL84	ST3L2_HUMAN	STAG3-like	81_84	SCD.					nucleus	binding				0						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													2	4	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277919	139277919	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chr9:139277919delC	uc004chh.2	-	15	1711	c.1702delG	c.(1702-1704)GACfs	p.D568fs		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	568					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		AGGTCCATGTCCGGGACCATG	0.617													2	4	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-GN-A262-06A-11D-A196-08	TCGA-GN-A262-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	2399ab13-abfa-480e-9fda-7947edc420be	eb8c867e-d2da-48c7-bae7-5aea6d9aaf1d	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			10	33	---	---	---	---					
