Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12336754	12336754	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:12336754G>A	uc001atv.2	+	19	3250	c.3109G>A	c.(3109-3111)GAT>AAT	p.D1037N	VPS13D_uc001atw.2_Missense_Mutation_p.D1037N|VPS13D_uc001atx.2_Missense_Mutation_p.D225N	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1037					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAGCCTTCGGGATAGCAGGGC	0.488000											OREG0013110	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	55					0	0	0.000274275	0	0
VPS13D	55187	broad.mit.edu	37	1	12339581	12339581	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:12339581C>T	uc001atv.2	+	20	4617	c.4476C>T	c.(4474-4476)ACC>ACT	p.T1492T	VPS13D_uc001atw.2_Silent_p.T1492T|VPS13D_uc001atx.2_Silent_p.T680T	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1492					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ACAACACCACCATTCAGTTTA	0.363000													11	50					0	0	6.40141e-05	0	0
AADACL4	343066	broad.mit.edu	37	1	12726223	12726223	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:12726223C>T	uc001auf.2	+	4	701	c.701C>T	c.(700-702)TCC>TTC	p.S234F		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	234	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CAGTTGCCATCCTTTCAGCAG	0.522000													16	162					0	0	0.000175454	0	0
PRDM2	7799	broad.mit.edu	37	1	14104971	14104971	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:14104971C>T	uc001avi.2	+	8	1537	c.681C>T	c.(679-681)CTC>CTT	p.L227L	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Silent_p.L227L|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Silent_p.L26L|PRDM2_uc001avk.2_Silent_p.L26L|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	227						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CGGCCACCCTCCAGGAGGTGG	0.582000													16	124					0	0	0.000308642	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16532070	16532070	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:16532070G>A	uc001ayc.1	-	9	1681	c.1544C>T	c.(1543-1545)CCC>CTC	p.P515L	ARHGEF19_uc009voo.1_5'UTR|ARHGEF19_uc001ayb.1_5'UTR	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	515	DH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCTGGAAGGGCAGGATAAG	0.632000													5	24					0	0	3.59834e-05	0	0
NBPF1	55672	broad.mit.edu	37	1	16914223	16914224	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:16914223_16914224GG>TT	uc009vos.1	-	10	1450_1451	c.562_563CC>AA	c.(562-564)CCC>AAC	p.P188N	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	188	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTGTTACCTGGGGGCAGATGAT	0.441000													14	559					0	0	6.4e-05	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447909	24447909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:24447909C>T	uc001biq.1	-	7	1150	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	IL22RA1_uc010oeg.1_Missense_Mutation_p.E303K|IL22RA1_uc009vrb.1_Missense_Mutation_p.E235K|IL22RA1_uc010oeh.1_Missense_Mutation_p.E371K	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	371	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		AATTGAGCTTCGGGGGTCACC	0.627000													12	111					0	0	0.000308642	0	0
SEPN1	57190	broad.mit.edu	37	1	26131760	26131760	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:26131760C>T	uc010oer.1	+	6	586	c.531C>T	c.(529-531)TTC>TTT	p.F177F	SEPN1_uc010oes.1_Silent_p.F143F	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	177						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		AAGATGGCTTCCTAGGGGTGA	0.567000													9	54					0	0	0.000442599	0	0
GPATCH3	63906	broad.mit.edu	37	1	27217645	27217645	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:27217645G>A	uc001bne.2	-	7	1463	c.1434C>T	c.(1432-1434)TCC>TCT	p.S478S	GPN2_uc001bnd.1_5'Flank|GPATCH3_uc009vsp.1_Silent_p.S289S	NM_022078	NP_071361	Q96I76	GPTC3_HUMAN	G patch domain containing 3	478						intracellular	nucleic acid binding				0		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.97e-51)|OV - Ovarian serous cystadenocarcinoma(117;9.55e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|STAD - Stomach adenocarcinoma(196;0.000595)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|READ - Rectum adenocarcinoma(331;0.0419)		CATAGATGGTGGAGATGAGCC	0.547000													5	32					0	0	0.000602214	0	0
C1orf172	126695	broad.mit.edu	37	1	27278365	27278365	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:27278365G>A	uc001bni.1	-	2	596	c.507C>T	c.(505-507)ATC>ATT	p.I169I		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	169										large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		GATACACAGGGATGCCTTTGA	0.657000													6	51					0	0	8.12818e-05	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956858	33956858	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:33956858T>A	uc001bxj.3	+	6	1167	c.1000T>A	c.(1000-1002)TTC>ATC	p.F334I	ZSCAN20_uc001bxk.2_Missense_Mutation_p.F280I|ZSCAN20_uc009vui.2_Missense_Mutation_p.F334I	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	334					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GACCAAGACTTTCCTGGCAAT	0.522000													7	81					0	0	8.12818e-05	0	0
ZMYM6	9204	broad.mit.edu	37	1	35452992	35452992	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:35452992C>T	uc001byh.2	-	16	3919	c.3691G>A	c.(3691-3693)GAA>AAA	p.E1231K	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Missense_Mutation_p.E1134K	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1231					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				TTTTCTTCTTCGAAGTCGGTG	0.353000													18	67					0	0	9.7654e-05	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52896717	52896717	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:52896717G>A	uc001ctx.2	-	28	4910	c.4676C>T	c.(4675-4677)TCC>TTC	p.S1559F	ZCCHC11_uc001cty.2_Missense_Mutation_p.S1560F|ZCCHC11_uc001ctz.2_Missense_Mutation_p.S1555F|ZCCHC11_uc001cua.1_Missense_Mutation_p.S477F	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	1559	Pro-rich.				miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						GTTTACCAGGGAATTTGGAGC	0.463000													30	115					0	0	0.000409698	0	0
GLIS1	148979	broad.mit.edu	37	1	53980410	53980410	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:53980410C>T	uc001cvr.1	-	7	1813	c.1246G>A	c.(1246-1248)GGC>AGC	p.G416S		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	416					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGCAGGAGGCCCGATGCAAGT	0.612000													7	47					0	0	0.000157383	0	0
USP24	23358	broad.mit.edu	37	1	55591072	55591072	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:55591072G>A	uc001cyg.3	-	31	3401	c.3401C>T	c.(3400-3402)TCC>TTC	p.S1134F		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1294					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						CTGTCGGTAGGATGACTTTTC	0.458000													14	90					0	0	9.7654e-05	0	0
HHLA3	11147	broad.mit.edu	37	1	70832184	70832184	+	Silent	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:70832184T>C	uc001dfa.2	+	2	457	c.315T>C	c.(313-315)TCT>TCC	p.S105S	HHLA3_uc010oqp.1_RNA|HHLA3_uc001dfb.2_Silent_p.L72L|HHLA3_uc001dfc.2_Missense_Mutation_p.L73P	NM_001036645	NP_001031722	Q9XRX5	HHLA3_HUMAN	HERV-H LTR-associating 3 isoform 2	105							protein binding				0						cttggatctcttgcaagaaag	0.065000													3	12					0	0	6.4e-05	0	0
TTLL7	79739	broad.mit.edu	37	1	84408284	84408284	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:84408284G>A	uc001djc.2	-	7	981	c.585C>T	c.(583-585)TTC>TTT	p.F195F	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_Intron|TTLL7_uc001djf.2_Intron|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	195	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CTTCCATTAGGAAAGGCTTTT	0.328000													8	55					0	0	0.000274275	0	0
C1orf52	148423	broad.mit.edu	37	1	85724326	85724326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:85724326G>A	uc001dkv.2	-	2	395	c.356C>T	c.(355-357)CCT>CTT	p.P119L	C1orf52_uc001dkw.2_RNA|C1orf52_uc001dkx.3_RNA|C1orf52_uc009wcn.2_Missense_Mutation_p.P119L	NM_198077	NP_932343	Q8N6N3	CA052_HUMAN	hypothetical protein LOC148423	119										ovary(1)	1				all cancers(265;0.0105)|Epithelial(280;0.0293)		AAGCTCTGGAGGCGGAGGCTT	0.438000													10	53					0	0	0.000442599	0	0
DDX20	11218	broad.mit.edu	37	1	112305559	112305559	+	Missense_Mutation	SNP	C	G	G	rs142254105		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:112305559C>G	uc001ebs.2	+	10	1599	c.1242C>G	c.(1240-1242)TGC>TGG	p.C414W	DDX20_uc010owf.1_Missense_Mutation_p.C176W|DDX20_uc001ebt.2_Missense_Mutation_p.C22W	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	414	Helicase C-terminal.				assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTACTGTTGCCGGGGAGAGG	0.378000													5	46					0	0	3.59834e-05	0	0
PHGDH	26227	broad.mit.edu	37	1	120277263	120277264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:120277263_120277264GG>TT	uc001ehz.2	+	6	744_745	c.517_518GG>TT	c.(517-519)GGG>TTG	p.G173L	PHGDH_uc009whl.2_Missense_Mutation_p.G75L|PHGDH_uc009whm.2_Missense_Mutation_p.G71L|PHGDH_uc001eia.2_Missense_Mutation_p.G173L|PHGDH_uc009whn.2_Missense_Mutation_p.G173L|PHGDH_uc001eib.2_Missense_Mutation_p.G139L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	173					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCAGACTATAGGGTATGACCCC	0.446000													11	384					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864154	144864155	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:144864154_144864155GG>TT	uc001elw.3	-	36	6231_6232	c.5940_5941CC>AA	c.(5938-5943)TCCCTC>TCAATC	p.L1981I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.L1875I|PDE4DIP_uc001elv.3_Missense_Mutation_p.L988I|PDE4DIP_uc001ema.2_Missense_Mutation_p.L168I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1981	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTTTCCTGGAGGGAAAGACGTT	0.441000			T	PDGFRB	MPD								15	509					0	0	6.4e-05	0	0
TPM3	7170	broad.mit.edu	37	1	154164430	154164430	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:154164430C>A	uc001fec.1	-	1	180	c.65G>T	c.(64-66)CGG>CTG	p.R22L		NM_152263	NP_689476	P06753	TPM3_HUMAN	tropomyosin 3 isoform 1	21	By similarity.				cellular component movement|muscle filament sliding|regulation of muscle contraction	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding		TPM3/ALK(33)	haematopoietic_and_lymphoid_tissue(22)|soft_tissue(11)|skin(1)	34	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					TTGCTCTGCCCGATCCAGAGC	0.488000			T	NTRK1|ALK	papillary thyroid|ALCL								8	128					0.000274275	0.0050184	0.000274275	1	0
OR10X1	128367	broad.mit.edu	37	1	158548760	158548760	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:158548760C>T	uc010pin.1	-	1	930	c.930G>A	c.(928-930)ATG>ATA	p.M310I		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AAGCATTTTTCATGTCCTTAT	0.438000													27	110					0	0	0.000586117	0	0
IGSF8	93185	broad.mit.edu	37	1	160064873	160064873	+	Silent	SNP	C	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:160064873C>G	uc001fva.2	-	2	273	c.228G>C	c.(226-228)CTG>CTC	p.L76L	IGSF8_uc001fuz.2_Silent_p.L76L|IGSF8_uc009wtf.2_Silent_p.L76L	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	76	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TGACAATGCCCAGTGCAGTAT	0.587000													3	42					0	0	0.000602214	0	0
VANGL2	57216	broad.mit.edu	37	1	160389198	160389198	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:160389198A>G	uc001fwb.1	+	5	898	c.599A>G	c.(598-600)TAT>TGT	p.Y200C	VANGL2_uc001fwc.1_Missense_Mutation_p.Y200C	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	200	Extracellular (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGGCTCTTCTATGGTGTGCGC	0.632000													26	105					0	0	0.000227799	0	0
LMX1A	4009	broad.mit.edu	37	1	165173144	165173144	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:165173144G>A	uc001gcy.1	-	8	1343	c.1122C>T	c.(1120-1122)TCC>TCT	p.S374S	LMX1A_uc001gcz.1_Silent_p.S374S|LMX1A_uc001gcw.1_Silent_p.S92S|LMX1A_uc001gcx.1_Silent_p.S125S	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	374						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AATTCTGCATGGAGTACAGAT	0.493000													13	51					0	0	0.000219431	0	0
SOAT1	6646	broad.mit.edu	37	1	179310230	179310230	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:179310230T>C	uc001gml.2	+	7	628	c.565T>C	c.(565-567)TGG>CGG	p.W189R	SOAT1_uc010pni.1_Missense_Mutation_p.W124R|SOAT1_uc001gmm.2_Missense_Mutation_p.W131R|SOAT1_uc010pnj.1_5'UTR|SOAT1_uc010pnk.1_Missense_Mutation_p.W124R	NM_003101	NP_003092	P35610	SOAT1_HUMAN	sterol O-acyltransferase 1	189					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|cholesterol storage|macrophage derived foam cell differentiation|positive regulation of amyloid precursor protein biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			central_nervous_system(1)|skin(1)	2					Ezetimibe(DB00973)|Hesperetin(DB01094)	TTGGACCTGGTGGATCATGTT	0.448000													15	77					0	0	0.000219431	0	0
NAV1	89796	broad.mit.edu	37	1	201780773	201780773	+	Silent	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:201780773C>A	uc001gwu.2	+	24	5178	c.4831C>A	c.(4831-4833)CGG>AGG	p.R1611R	NAV1_uc001gwx.2_Silent_p.R1220R	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1614					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CCAGATAGACCGGGAAACAGG	0.517000													9	187					0.000274275	0.0050184	0.000274275	1	0
NFASC	23114	broad.mit.edu	37	1	204913534	204913534	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:204913534C>T	uc001hbj.2	+	3	419	c.91C>T	c.(91-93)CCA>TCA	p.P31S	NFASC_uc001hbh.2_Missense_Mutation_p.P31S|NFASC_uc010pqz.1_Silent_p.L31L|NFASC_uc010pra.1_Silent_p.L31L|NFASC_uc001hbi.2_Silent_p.L31L|NFASC_uc009xbg.1_Silent_p.L104L|NFASC_uc010prb.1_Silent_p.L31L|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	31	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCCTATGGATCGTGAGTCCTG	0.572000													5	19					0	0	0.000602214	0	0
MFSD4	148808	broad.mit.edu	37	1	205553164	205553164	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:205553164C>T	uc001hcv.3	+	4	858	c.772C>T	c.(772-774)CTG>TTG	p.L258L	MFSD4_uc010prk.1_Silent_p.L171L|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.L203L	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	258					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GCCCCTGCTTCTGTCTGCTGA	0.602000													11	59					0	0	0.000151284	0	0
AVPR1B	553	broad.mit.edu	37	1	206225076	206225076	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:206225076G>A	uc001hds.2	+	1	794	c.636G>A	c.(634-636)GTG>GTA	p.V212V		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	212	Helical; Name=5; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TTCTGCCGGTGACCATGCTCA	0.617000													14	67					0	0	0.000308642	0	0
KCNH1	3756	broad.mit.edu	37	1	210857140	210857140	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:210857140C>T	uc001hib.2	-	11	2623	c.2453G>A	c.(2452-2454)GGG>GAG	p.G818E	KCNH1_uc001hic.2_Missense_Mutation_p.G791E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	818	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GCACTCGGACCCTGGCGCCTG	0.667000													19	62					0	0	0.000229342	0	0
RYR2	6262	broad.mit.edu	37	1	237666774	237666774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:237666774C>T	uc001hyl.1	+	22	2702	c.2582C>T	c.(2581-2583)GCC>GTC	p.A861V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	861	Cytoplasmic (By similarity).|1.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACGCAAGCTGCCTTCACACCC	0.468000													11	81					0	0	0.00010058	0	0
RGS7	6000	broad.mit.edu	37	1	241099926	241099926	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:241099926C>T	uc001hyv.2	-	5	637	c.307G>A	c.(307-309)GAT>AAT	p.D103N	RGS7_uc010pyh.1_Missense_Mutation_p.D77N|RGS7_uc010pyj.1_Missense_Mutation_p.D19N|RGS7_uc001hyu.2_Missense_Mutation_p.D103N|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.D103N	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	103	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GTGCCATCATCCTTGAGTGTG	0.398000													26	142					0	0	0.000184323	0	0
RGS7	6000	broad.mit.edu	37	1	241262050	241262050	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:241262050T>G	uc001hyv.2	-	3	421	c.91A>C	c.(91-93)ATA>CTA	p.I31L	RGS7_uc010pyh.1_Missense_Mutation_p.I5L|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.I31L|RGS7_uc009xgn.1_Missense_Mutation_p.I31L|RGS7_uc001hyw.2_Missense_Mutation_p.I31L	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	31					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			ATCCGTGCTATGACGTCTTCC	0.333000													3	45					0	0	6.4e-05	0	0
CNST	163882	broad.mit.edu	37	1	246810596	246810596	+	Missense_Mutation	SNP	T	C	C	rs143401878		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr1:246810596T>C	uc001ibp.2	+	9	1471	c.1093T>C	c.(1093-1095)TGC>CGC	p.C365R	CNST_uc001ibo.3_Missense_Mutation_p.C365R	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	365					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GGAGCTGCTCTGCAGCGCTGA	0.597000											OREG0014367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	64					0	0	0.000132358	0	0
UPF2	26019	broad.mit.edu	37	10	12001213	12001214	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:12001213_12001214CG>AT	uc001ila.2	-	11	2800_2801	c.2326_2327CG>AT	c.(2326-2328)CGG>ATG	p.R776M	UPF2_uc001ilb.2_Missense_Mutation_p.R776M|UPF2_uc001ilc.2_Missense_Mutation_p.R776M|UPF2_uc009xiz.1_Missense_Mutation_p.R776M	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	776	Sufficient for interaction with UPF3A and UPF3B.|MIF4G 3.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CAAAAGTTTCCGGACATATTCC	0.406000													12	537					0	0	6.4e-05	0	0
FAM171A1	221061	broad.mit.edu	37	10	15262951	15262951	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:15262951G>A	uc001iob.2	-	6	870	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	288	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						ACCTGGGATGGGAGGGGACAT	0.552000													13	128					0	0	0.000422831	0	0
PLXDC2	84898	broad.mit.edu	37	10	20534415	20534415	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:20534415C>A	uc001iqg.1	+	13	2091	c.1454C>A	c.(1453-1455)GCC>GAC	p.A485D	PLXDC2_uc001iqh.1_Missense_Mutation_p.A436D|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	485	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ACATCAGCAGCCAGCATCTTC	0.443000													10	126					3.07112e-06	5.75057e-05	6.40141e-05	1	0
NEBL	10529	broad.mit.edu	37	10	21124516	21124516	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:21124516C>T	uc001iqi.2	-	14	1772	c.1375G>A	c.(1375-1377)GGG>AGG	p.G459R	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	459	Nebulin 12.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATTCCTTTCCCTTTAATTATT	0.448000													19	197					0	0	0.000175454	0	0
MKX	283078	broad.mit.edu	37	10	28023489	28023489	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:28023489G>C	uc001ity.3	-	5	959	c.734C>G	c.(733-735)ACA>AGA	p.T245R	MKX_uc001itx.3_Missense_Mutation_p.T245R	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	245					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCTTTGCCTTGTTTTTCCCAT	0.443000													7	101					0	0	0.000274275	0	0
ERCC6	2074	broad.mit.edu	37	10	50691522	50691522	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:50691522A>G	uc001jhs.3	-	9	2016	c.1862T>C	c.(1861-1863)TTG>TCG	p.L621S	ERCC6_uc010qgr.1_5'UTR|ERCC6_uc001jhr.3_Missense_Mutation_p.L21S	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	621	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						AGATGTGATCAAAATTCCATG	0.378000								Direct_reversal_of_damage|NER					4	85					0	0	0.00024832	0	0
ANK3	288	broad.mit.edu	37	10	61833963	61833963	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:61833963C>T	uc001jky.2	-	37	6868	c.6676G>A	c.(6676-6678)GAA>AAA	p.E2226K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2226					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATCTTCTTCACTACTGGCT	0.408000													14	113					0	0	0.000219431	0	0
CTNNA3	29119	broad.mit.edu	37	10	69366759	69366759	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:69366759C>T	uc009xpn.1	-	3	271	c.148G>A	c.(148-150)GGA>AGA	p.G50R	CTNNA3_uc001jmw.2_Missense_Mutation_p.G50R|CTNNA3_uc001jmx.3_Missense_Mutation_p.G50R|CTNNA3_uc009xpo.1_5'UTR|CTNNA3_uc001jna.2_Missense_Mutation_p.G62R	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	50					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TTCGAACGTCCTTTTTTCCTG	0.408000													10	68					0	0	3.86212e-05	0	0
KIAA1274	27143	broad.mit.edu	37	10	72324133	72324133	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:72324133A>G	uc001jrd.3	+	19	2557	c.2276A>G	c.(2275-2277)AAA>AGA	p.K759R	KIAA1274_uc001jre.3_Missense_Mutation_p.K50R	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	759										ovary(2)|central_nervous_system(1)	3						AAGGCAGCGAAAGAGGCGCAA	0.612000													4	69					0	0	0.00024832	0	0
CYP2C19	1557	broad.mit.edu	37	10	96522588	96522588	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:96522588C>T	uc010qnz.1	+	1	126	c.126C>T	c.(124-126)ATC>ATT	p.I42I	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	42					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTGGAAATATCCTACAGATAG	0.418000													7	63					0	0	0.000157383	0	0
CYP2C8	1558	broad.mit.edu	37	10	96829127	96829127	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:96829127G>A	uc001kkb.2	-	1	128	c.33C>T	c.(31-33)CTC>CTT	p.L11L	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_5'UTR|CYP2C8_uc010qob.1_5'UTR|CYP2C8_uc010qoc.1_5'UTR|CYP2C8_uc010qod.1_5'UTR	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	11					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GCATAAAAGAGAGACACAGCA	0.453000													5	45					0	0	0.000602214	0	0
DNTT	1791	broad.mit.edu	37	10	98087355	98087355	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:98087355G>A	uc001kmf.2	+	7	1175	c.1005G>A	c.(1003-1005)CGG>CGA	p.R335R	DNTT_uc001kmg.2_Silent_p.R335R	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	335	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GAGGGTTCCGGAGGTAAATAA	0.527000													11	136					0	0	0.000308642	0	0
GOT1	2805	broad.mit.edu	37	10	101163546	101163546	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:101163546T>C	uc001kpr.2	-	6	936	c.728A>G	c.(727-729)TAT>TGT	p.Y243C	GOT1_uc009xwh.2_RNA|GOT1_uc001kpq.1_Intron	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	243					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AGACACAAAATAGCGAATGGC	0.542000													4	49					0	0	0.000602214	0	0
SORCS3	22986	broad.mit.edu	37	10	107015523	107015523	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:107015523G>A	uc001kyi.1	+	24	3528	c.3301G>A	c.(3301-3303)GTA>ATA	p.V1101I		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1101	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GAAGCCGGGGGTACAAGTCAT	0.458000													6	32					0	0	0.000274275	0	0
HSPA12A	259217	broad.mit.edu	37	10	118435910	118435910	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:118435910G>A	uc001lct.2	-	11	1495	c.1390C>T	c.(1390-1392)CGG>TGG	p.R464W	HSPA12A_uc001lcu.2_Missense_Mutation_p.R381W	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	464							ATP binding			ovary(1)	1				all cancers(201;0.0158)		TGATACTTACGGAGATGCTCA	0.572000													9	87					0	0	3.86212e-05	0	0
FGFR2	2263	broad.mit.edu	37	10	123239526	123239526	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr10:123239526C>T	uc010qtk.1	-	19	2958	c.2311G>A	c.(2311-2313)GAC>AAC	p.D771N	FGFR2_uc010qtg.1_Missense_Mutation_p.D659N|FGFR2_uc010qth.1_Missense_Mutation_p.D656N|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Missense_Mutation_p.D772N|FGFR2_uc010qtl.1_Missense_Mutation_p.D655N|FGFR2_uc010qtm.1_Missense_Mutation_p.D654N|FGFR2_uc001lfg.3_Missense_Mutation_p.D379N|FGFR2_uc001lfk.1_RNA	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	771	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TGGCTGAGGTCCAAGTATTCC	0.448000		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				14	109					0	0	0.000422831	0	0
PSMD13	5719	broad.mit.edu	37	11	251915	251916	+	Silent	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:251915_251916CC>AA	uc001lol.2	+	12	1256_1257	c.1014_1015CC>AA	c.(1012-1017)CCCCGA>CCAAGA	p.338_339PR>PR	PSMD13_uc010qvr.1_RNA|PSMD13_uc001loo.2_Silent_p.340_341PR>PR|PSMD13_uc001lon.2_Silent_p.273_274PR>PR|PSMD13_uc001lom.2_Silent_p.313_314PR>PR|PSMD13_uc001lop.2_Silent_p.121_122PR>PR	NM_002817	NP_002808	Q9UNM6	PSD13_HUMAN	proteasome 26S non-ATPase subunit 13 isoform 1	338_339					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding			ovary(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.79e-27)|Epithelial(43;4e-26)|OV - Ovarian serous cystadenocarcinoma(40;6.02e-21)|BRCA - Breast invasive adenocarcinoma(625;3.93e-05)|Lung(200;0.112)|LUSC - Lung squamous cell carcinoma(625;0.129)		GGGTGCAGCCCCGAGTGTTGGA	0.505000													8	174					0	0	6.4e-05	0	0
OR51L1	119682	broad.mit.edu	37	11	5020679	5020679	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:5020679G>A	uc010qyu.1	+	1	467	c.467G>A	c.(466-468)GGA>GAA	p.G156E		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CGAAGCTTGGGAGTTGTACTT	0.483000													39	128					0	0	0.000228196	0	0
TRIM22	10346	broad.mit.edu	37	11	5730298	5730298	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:5730298A>G	uc001mbr.2	+	8	1194	c.917A>G	c.(916-918)AAT>AGT	p.N306S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Missense_Mutation_p.N302S|TRIM22_uc010qzm.1_Missense_Mutation_p.N134S|TRIM22_uc009yeu.2_Missense_Mutation_p.N117S|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	306	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GTGATGCTGAATCCAGGCAGT	0.393000													14	66					0	0	0.000219431	0	0
FAM160A2	84067	broad.mit.edu	37	11	6235700	6235700	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:6235700T>C	uc001mcl.3	-	11	2857	c.2498A>G	c.(2497-2499)AAG>AGG	p.K833R	FAM160A2_uc001mck.3_Missense_Mutation_p.K847R	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	833					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						CCAGTCCAACTTGCCACGGGC	0.592000													13	113					0	0	0.000151284	0	0
ZNF214	7761	broad.mit.edu	37	11	7022610	7022611	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:7022610_7022611GG>TT	uc001mfa.2	-	3	606_607	c.303_304CC>AA	c.(301-306)TCCCAG>TCAAAG	p.Q102K	ZNF214_uc010ray.1_Missense_Mutation_p.Q102K|ZNF214_uc009yfh.1_Missense_Mutation_p.Q102K	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TCCTGACACTGGGAACGATCTT	0.431000													11	405					0	0	6.4e-05	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16810768	16810768	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:16810768C>T	uc001mmo.2	-	23	3247	c.3232G>A	c.(3232-3234)GAG>AAG	p.E1078K	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E1079K|PLEKHA7_uc001mmm.2_Missense_Mutation_p.E181K|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E653K|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E787K	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	1078	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTCATGCGCTCCAGCTGCTCC	0.627000													9	114					0	0	0.000442599	0	0
OR4S1	256148	broad.mit.edu	37	11	48328317	48328317	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:48328317C>T	uc010rhu.1	+	1	543	c.543C>T	c.(541-543)CCC>CCT	p.P181P		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGTTCATCCCCTGCTCAAGT	0.483000													14	55					0	0	0.000219431	0	0
FOLH1	2346	broad.mit.edu	37	11	49195014	49195014	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:49195014G>A	uc001ngy.2	-	10	1381	c.1120C>T	c.(1120-1122)CTG>TTG	p.L374L	FOLH1_uc001ngz.2_Silent_p.L374L|FOLH1_uc009yly.2_Silent_p.L359L|FOLH1_uc009ylz.2_Silent_p.L359L|FOLH1_uc009yma.2_Silent_p.L66L	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	374	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TGACCTCCCAGAATGACATAT	0.388000													13	83					0	0	9.7654e-05	0	0
OR4A15	81328	broad.mit.edu	37	11	55135894	55135894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:55135894G>A	uc010rif.1	+	1	535	c.535G>A	c.(535-537)GGA>AGA	p.G179R		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	179	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCCTGGATTGGAGGCTTTCT	0.433000													35	171					0	0	0.000319135	0	0
AHNAK	79026	broad.mit.edu	37	11	62298257	62298258	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:62298257_62298258CC>AA	uc001ntl.2	-	5	3931_3932	c.3631_3632GG>TT	c.(3631-3633)GGG>TTG	p.G1211L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1211					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATCCACATCCCCTTTGACTTTG	0.480000													14	361					0	0	6.4e-05	0	0
SLC22A10	387775	broad.mit.edu	37	11	63072214	63072215	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:63072214_63072215CC>AA	uc009yor.2	+	9	1659_1660	c.1451_1452CC>AA	c.(1450-1452)CCC>CAA	p.P484Q	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	484	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GCACTGGCTCCCCTCTTGATGA	0.401000													7	98					0	0	6.4e-05	0	0
TCIRG1	10312	broad.mit.edu	37	11	67816662	67816662	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:67816662G>A	uc001one.2	+	15	1896	c.1788G>A	c.(1786-1788)TGG>TGA	p.W596*	TCIRG1_uc001ong.2_Nonsense_Mutation_p.W380*|TCIRG1_uc001onh.2_Nonsense_Mutation_p.W298*|TCIRG1_uc001oni.2_Nonsense_Mutation_p.W100*|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	596	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						TGTGTGTCTGGGCTGCCAGGG	0.627000													11	91					0	0	3.86212e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92087026	92087026	+	Missense_Mutation	SNP	G	T	T	rs75759020		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:92087026G>T	uc001pdj.3	+	1	1765	c.1748G>T	c.(1747-1749)TGC>TTC	p.C583F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	583	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AAAGTGGCTTGCCAGGGAGTT	0.428000										TCGA Ovarian(4;0.039)			19	376					2.00842e-17	3.86098e-16	0.000509022	1	0
HEPHL1	341208	broad.mit.edu	37	11	93779085	93779085	+	Splice_Site	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:93779085T>A	uc001pep.2	+	2	572	c.415_splice	c.e2+2	p.G139_splice		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor						copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				ATTCAGAAGGTAAATATCAAT	0.368000													6	48					0	0	0.000157383	0	0
ATM	472	broad.mit.edu	37	11	108225536	108225536	+	Splice_Site	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:108225536A>G	uc001pkb.1	+	61	9172	c.8787_splice	c.e61-2	p.R2929_splice	ATM_uc009yxr.1_Splice_Site_p.R2929_splice|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Splice_Site_p.R1581_splice	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1						cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GTTTGACTCTAGATGCTGTGA	0.338000			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			11	163					0	0	0.00010058	0	0
NCAPD3	23310	broad.mit.edu	37	11	134076553	134076553	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr11:134076553G>A	uc001qhd.1	-	8	1563	c.957C>T	c.(955-957)GCC>GCT	p.A319A	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	319					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		CAGCAAGGGGGGCACGATGGG	0.423000													18	81					0	0	7.07596e-05	0	0
SLC6A13	6540	broad.mit.edu	37	12	344274	344274	+	Silent	SNP	C	T	T	rs147679992	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:344274C>T	uc001qic.1	-	7	866	c.813G>A	c.(811-813)ACG>ACA	p.T271T	SLC6A13_uc009zdj.1_Silent_p.T271T|SLC6A13_uc010sdl.1_Silent_p.T179T|SLC6A13_uc010sdm.1_Silent_p.T152T	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	271					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CCCACAGACGCGTGAGGTTTG	0.567000													12	54					0	0	0.000219431	0	0
SLC2A3	6515	broad.mit.edu	37	12	8074018	8074019	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:8074018_8074019GG>AA	uc001qtr.2	-	10	1743_1744	c.1481_1482CC>TT	c.(1480-1482)ACC>ATT	p.T494I		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	494	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		CTTAGACATTGGTGGTGGTCTC	0.569000													27	262					0	0	6.4e-05	0	0
PRB4	5545	broad.mit.edu	37	12	11461723	11461723	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:11461723C>T	uc001qzf.1	-	3	228	c.194G>A	c.(193-195)GGA>GAA	p.G65E	PRB4_uc001qzt.2_Missense_Mutation_p.G65E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	65	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|2.					extracellular region				ovary(1)	1						GGACTGGTTTCCTCCTTGTGG	0.622000										HNSCC(22;0.051)			17	225					0	0	9.7654e-05	0	0
LRP6	4040	broad.mit.edu	37	12	12317469	12317470	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:12317469_12317470CC>AA	uc001rah.3	-	9	1931_1932	c.1789_1790GG>TT	c.(1789-1791)GGG>TTG	p.G597L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.G597L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	597	EGF-like 2.|Extracellular (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GCTACATCCCCCGTTTTCCTCA	0.441000													11	337					0	0	6.4e-05	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19418703	19418703	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:19418703C>T	uc001reb.2	+	8	716	c.630C>T	c.(628-630)ATC>ATT	p.I210I	PLEKHA5_uc010sie.1_Silent_p.I210I|PLEKHA5_uc001rea.2_Silent_p.I210I|PLEKHA5_uc009zin.2_5'UTR|PLEKHA5_uc010sif.1_Silent_p.I102I|PLEKHA5_uc010sig.1_Silent_p.I102I|PLEKHA5_uc010sih.1_Silent_p.I102I	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	210	PH.						1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					AAGAGGGTATCCTGGGAAGCA	0.318000													26	168					0	0	0.000339439	0	0
BCAT1	586	broad.mit.edu	37	12	25031517	25031517	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:25031517G>A	uc001rgd.3	-	5	899	c.457C>T	c.(457-459)CCA>TCA	p.P153S	BCAT1_uc001rgc.2_Missense_Mutation_p.P152S|BCAT1_uc010six.1_Missense_Mutation_p.P165S|BCAT1_uc010siy.1_Missense_Mutation_p.P116S|BCAT1_uc001rge.3_Missense_Mutation_p.P92S	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	153					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	GTTGAATATGGGACCCATTCT	0.363000													6	60					0	0	0.000274275	0	0
ABCD2	225	broad.mit.edu	37	12	40012962	40012962	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:40012962C>T	uc001rmb.2	-	1	882	c.456G>A	c.(454-456)ATG>ATA	p.M152I		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	152	ABC transmembrane type-1.|Helical; (Potential).|Interaction with PEX19.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						GGATGGCAATCATAAGCCACT	0.433000													9	79					0	0	0.000442599	0	0
SLC38A4	55089	broad.mit.edu	37	12	47186763	47186763	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:47186763C>T	uc001rpi.2	-	3	491	c.92G>A	c.(91-93)GGA>GAA	p.G31E	SLC38A4_uc001rpj.2_Missense_Mutation_p.G31E|SLC38A4_uc009zkl.2_Missense_Mutation_p.G31E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	31	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TTCTGAATTTCCTATCCCGAT	0.428000													8	174					0	0	0.000274275	0	0
TUBA1C	84790	broad.mit.edu	37	12	49666880	49666880	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:49666880G>A	uc001rtt.1	+	4	1320	c.1220G>A	c.(1219-1221)TGG>TAG	p.W407*	TUBA1C_uc001rts.2_Nonsense_Mutation_p.W372*|TUBA1C_uc010smh.1_Nonsense_Mutation_p.W477*|uc010smi.1_5'UTR	NM_032704	NP_116093	Q9BQE3	TBA1C_HUMAN	tubulin alpha 6	407					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0						TTTGTTCACTGGTACGTGGGT	0.562000													13	89					0	0	0.000219431	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54894360	54894360	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:54894360G>A	uc001sgc.3	+	3	336	c.257G>A	c.(256-258)AGA>AAA	p.R86K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.R36K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	86					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GAGATAATTAGATTCCTCACC	0.393000													10	132					0	0	3.86212e-05	0	0
CS	1431	broad.mit.edu	37	12	56679756	56679756	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:56679756T>C	uc001sks.1	-	3	335	c.145A>G	c.(145-147)AAG>GAG	p.K49E	CS_uc010sql.1_Missense_Mutation_p.K36E|CS_uc001skr.1_5'UTR|CS_uc001skt.1_Intron|CS_uc010sqm.1_5'UTR	NM_004077	NP_004068	O75390	CISY_HUMAN	citrate synthase precursor	49					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity				0		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		CTGAAAGTCTTAATTCTGGCC	0.428000													33	213					0	0	0.000159656	0	0
SLC26A10	65012	broad.mit.edu	37	12	58017649	58017649	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:58017649C>T	uc001spe.2	+	8	1395	c.1084C>T	c.(1084-1086)CTG>TTG	p.L362L	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	362	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CACAGTGGTCCTGTCGGTGCT	0.567000													10	119					0	0	6.40141e-05	0	0
FAM19A2	338811	broad.mit.edu	37	12	62147450	62147450	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:62147450G>A	uc001sqw.2	-	4	1850	c.337C>T	c.(337-339)CGG>TGG	p.R113W	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Missense_Mutation_p.R113W|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	113						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		CATCCTTTCCGATCCGGAAGA	0.408000													7	73					0	0	8.12818e-05	0	0
FAM71C	196472	broad.mit.edu	37	12	100042415	100042415	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:100042415C>T	uc001tgn.2	+	1	885	c.463C>T	c.(463-465)CCA>TCA	p.P155S	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	155											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		GCTGTGTCCTCCATCGGATGC	0.473000													6	50					0	0	8.12818e-05	0	0
MYO1H	283446	broad.mit.edu	37	12	109882024	109882024	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:109882024C>G	uc010sxo.1	+	6	631	c.356C>G	c.(355-357)TCC>TGC	p.S119C	MYO1H_uc010sxn.1_Missense_Mutation_p.S928C			Q8N1T3	MYO1H_HUMAN	SubName: Full=cDNA FLJ54829, moderately similar to Myosin Ic; SubName: Full=Myosin IH, isoform CRA_a;	119						myosin complex	motor activity				0						TAAGGTGTCTCCACTAGCAAT	0.463000													11	115					0	0	6.40141e-05	0	0
C12orf34	84915	broad.mit.edu	37	12	110205859	110205859	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:110205859G>A	uc001tpd.1	+	3	684	c.125G>A	c.(124-126)AGC>AAC	p.S42N	MGC14436_uc010sxs.1_Intron|MGC14436_uc001tpe.2_Intron|C12orf34_uc001tpf.1_Missense_Mutation_p.S42N	NM_032829	NP_116218	Q5U5X8	CL034_HUMAN	hypothetical protein LOC84915	42										ovary(1)	1						CGCTACCCGAGCCCAGCAGAA	0.642000													6	43					0	0	3.59834e-05	0	0
KSR2	283455	broad.mit.edu	37	12	117964911	117964911	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:117964911G>A	uc001two.2	-	13	1784	c.1729C>T	c.(1729-1731)CCA>TCA	p.P577S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	606					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGAAGTAATGGATTTCCTTCC	0.438000													33	181					0	0	0.000191422	0	0
SBNO1	55206	broad.mit.edu	37	12	123810134	123810134	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:123810134C>A	uc010tap.1	-	14	1888	c.1888G>T	c.(1888-1890)GGT>TGT	p.G630C	SBNO1_uc010tao.1_Missense_Mutation_p.G629C|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.G630C|SBNO1_uc001ueu.2_Missense_Mutation_p.G629C|SBNO1_uc001uev.2_Missense_Mutation_p.G628C|SBNO1_uc009zxy.1_Missense_Mutation_p.G595C	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	630							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		GACTGCAGACCAATTACAACA	0.343000													9	291					0.00010058	0.00187359	0.00010058	1	0
AACS	65985	broad.mit.edu	37	12	125609487	125609487	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr12:125609487C>T	uc001uhc.2	+	12	1432	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	AACS_uc001uhd.2_Missense_Mutation_p.S409F|AACS_uc009zyh.2_Intron|AACS_uc009zyi.2_Missense_Mutation_p.S7F	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	409					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		ACGATCCTGTCCACTGGCTCC	0.557000													6	68					0	0	8.12818e-05	0	0
RNF6	6049	broad.mit.edu	37	13	26789559	26789559	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:26789559G>A	uc001uqo.2	-	5	751	c.460C>T	c.(460-462)CAC>TAC	p.H154Y	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.H154Y|RNF6_uc001uqp.2_Missense_Mutation_p.H154Y|RNF6_uc001uqq.2_Missense_Mutation_p.H154Y|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	154					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TGATTTACGTGGATTTCCAAA	0.388000													24	91					0	0	0.000586117	0	0
RXFP2	122042	broad.mit.edu	37	13	32367120	32367120	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:32367120G>A	uc001utt.2	+	16	1752	c.1681G>A	c.(1681-1683)GAT>AAT	p.D561N	RXFP2_uc010aba.2_Missense_Mutation_p.D520N	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	561	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TTGGAATAAGGATTATTTTGG	0.368000													9	56					0	0	0.000442599	0	0
FRY	10129	broad.mit.edu	37	13	32798442	32798442	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:32798442G>A	uc001utx.2	+	37	5332	c.4836G>A	c.(4834-4836)CCG>CCA	p.P1612P	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1612					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AGCCCTTACCGATGCCTTGTA	0.572000													9	54					0	0	0.000274275	0	0
ALG5	29880	broad.mit.edu	37	13	37539795	37539795	+	Silent	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:37539795T>A	uc001uvy.2	-	8	757	c.690A>T	c.(688-690)GGA>GGT	p.G230G	ALG5_uc010teq.1_Silent_p.G200G|ALG5_uc010ter.1_RNA	NM_013338	NP_037470	Q9Y673	ALG5_HUMAN	dolichyl-phosphate beta-glucosyltransferase	230	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		TGTCCCTGATTCCTTTGACAC	0.413000													7	67					0	0	8.12818e-05	0	0
POSTN	10631	broad.mit.edu	37	13	38153415	38153415	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:38153415A>G	uc001uwo.3	-	13	1860	c.1742T>C	c.(1741-1743)GTT>GCT	p.V581A	POSTN_uc010tet.1_Missense_Mutation_p.V109A|POSTN_uc001uwp.3_Missense_Mutation_p.V581A|POSTN_uc001uwr.2_Missense_Mutation_p.V581A|POSTN_uc001uwq.2_Missense_Mutation_p.V581A|POSTN_uc010teu.1_Missense_Mutation_p.V581A|POSTN_uc010tev.1_Missense_Mutation_p.V581A|POSTN_uc010tew.1_Missense_Mutation_p.V581A|POSTN_uc010tex.1_Missense_Mutation_p.V496A	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	581	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		AATGTTAGTAACACCAGGTTC	0.333000													8	93					0	0	0.000274275	0	0
LRCH1	23143	broad.mit.edu	37	13	47315858	47315859	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:47315858_47315859GG>TT	uc001vbj.2	+	19	2298_2299	c.2062_2063GG>TT	c.(2062-2064)GGG>TTG	p.G688L	LRCH1_uc001vbk.2_Missense_Mutation_p.G723L|LRCH1_uc001vbl.3_Intron	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	688	CH.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GCTGGCACTCGGGGAGAAAGCC	0.515000													7	339					0	0	6.4e-05	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698517	103698517	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr13:103698517T>C	uc001vpy.3	-	6	1610	c.1013A>G	c.(1012-1014)AAG>AGG	p.K338R		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	338	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TCCATTTGCCTTATAAAACGA	0.358000													12	102					0	0	0.000219431	0	0
NOVA1	4857	broad.mit.edu	37	14	26917851	26917851	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:26917851G>A	uc001wpy.2	-	5	1156	c.838C>T	c.(838-840)CCA>TCA	p.P280S	NOVA1_uc001wpz.2_Missense_Mutation_p.P256S|NOVA1_uc001wqa.2_Missense_Mutation_p.P158S	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	283	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GCAGCAGTTGGTAACACTTCA	0.493000													6	75					0	0	8.12818e-05	0	0
C14orf126	112487	broad.mit.edu	37	14	31926590	31926590	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:31926590C>T	uc001wrj.2	-	1	91	c.10G>A	c.(10-12)GGT>AGT	p.G4S	HEATR5A_uc010tpk.1_5'UTR	NM_080664	NP_542395	Q96FN9	DTD2_HUMAN	hypothetical protein LOC112487	4					D-amino acid catabolic process	cytoplasm	hydrolase activity, acting on ester bonds				0	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0113)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00888)		ATCCGGCTACCCTCAGCCATG	0.706000													3	8					0	0	6.4e-05	0	0
PSMA6	5687	broad.mit.edu	37	14	35778191	35778192	+	Nonsense_Mutation	DNP	CG	AT	AT	rs145545043	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:35778191_35778192CG>AT	uc001wtd.2	+	3	352_353	c.243_244CG>AT	c.(241-246)ACCGGA>ACATGA	p.G82*	KIAA0391_uc001wta.2_RNA|PSMA6_uc010tpt.1_Nonsense_Mutation_p.G3*|PSMA6_uc010tpu.1_Nonsense_Mutation_p.G3*	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	82					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		GTGTGATGACCGGAATGACAGG	0.277000													8	303					0	0	6.4e-05	0	0
LRFN5	145581	broad.mit.edu	37	14	42357007	42357007	+	Silent	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:42357007T>A	uc001wvm.2	+	3	2377	c.1179T>A	c.(1177-1179)GGT>GGA	p.G393G	LRFN5_uc010ana.2_Silent_p.G393G	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	393	Extracellular (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CTGATCCTGGTTCTTCAGATA	0.388000										HNSCC(30;0.082)			20	69					0	0	0.000229342	0	0
ABHD12B	145447	broad.mit.edu	37	14	51370832	51370833	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:51370832_51370833GG>TT	uc001wys.2	+	12	998_999	c.983_984GG>TT	c.(982-984)AGG>ATT	p.R328I	ABHD12B_uc001wyq.2_Missense_Mutation_p.R221I|ABHD12B_uc001wyr.2_Missense_Mutation_p.R251I|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	328							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					AACAAAGAGAGGGTCAAGATGG	0.431000													8	177					0	0	6.4e-05	0	0
MNAT1	4331	broad.mit.edu	37	14	61201633	61201633	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:61201633C>T	uc001xfd.2	+	1	164	c.53C>T	c.(52-54)TCC>TTC	p.S18F	MNAT1_uc010apq.1_Missense_Mutation_p.S18F|MNAT1_uc001xfe.2_Missense_Mutation_p.S18F	NM_002431	NP_002422	P51948	MAT1_HUMAN	menage a trois 1 (CAK assembly factor)	18	RING-type.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein complex assembly|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	cytoplasm|holo TFIIH complex	protein N-terminus binding|zinc ion binding			ovary(1)|lung(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.0174)		CGGAACCCCTCCTTGAAGCTG	0.602000								Direct_reversal_of_damage|NER					5	84					0	0	3.59834e-05	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73490736	73490736	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:73490736G>A	uc001xnm.2	-	2	1121	c.481C>T	c.(481-483)CAG>TAG	p.Q161*	ZFYVE1_uc010arj.2_Nonsense_Mutation_p.Q161*	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	161						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		GTGCTTACCTGAATTTCTTCA	0.448000													20	206					0	0	0.000229342	0	0
RPS6KL1	83694	broad.mit.edu	37	14	75378079	75378079	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:75378079A>G	uc010tux.1	-	6	1064	c.536T>C	c.(535-537)CTA>CCA	p.L179P	RPS6KL1_uc001xqx.1_5'Flank|RPS6KL1_uc001xqw.2_Missense_Mutation_p.L148P|RPS6KL1_uc010asd.1_RNA|RPS6KL1_uc001xqy.1_Missense_Mutation_p.L179P	NM_031464	NP_113652	Q9Y6S9	RPKL1_HUMAN	ribosomal protein S6 kinase-like 1	179	Protein kinase.					ribosome	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00658)		GCACCTGGGTAGGCTCTGGGA	0.627000													7	53					0	0	0.000274275	0	0
PAPOLA	10914	broad.mit.edu	37	14	97009114	97009114	+	Silent	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:97009114G>T	uc001yfq.2	+	14	1383	c.1173G>T	c.(1171-1173)GTG>GTT	p.V391V	PAPOLA_uc001yfr.2_Silent_p.V391V|PAPOLA_uc010twv.1_Silent_p.V391V|PAPOLA_uc010avp.2_Silent_p.V141V	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	391					mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		TGTTCAGGGTGGGCTTGGTGG	0.378000													7	141					0.000274275	0.0050184	0.000274275	1	0
ADAM6	8755	broad.mit.edu	37	14	106173747	106173747	+	RNA	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:106173747C>T	uc010tyt.1	-	3633		c.60151G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						AGGTACTTCTCGCGGGGCAGC	0.662000													7	49					0	0	0.000274275	0	0
ADAM6	8755	broad.mit.edu	37	14	106967281	106967281	+	RNA	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr14:106967281G>A	uc010tyt.1	-	201		c.9160C>T								Parts of antibodies, mostly variable regions.												0						TGCCTTGCAGGAAACCTTCAC	0.562000													12	58					0	0	6.40141e-05	0	0
ACTC1	70	broad.mit.edu	37	15	35083487	35083487	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:35083487G>A	uc001ziu.1	-	6	1061	c.818C>T	c.(817-819)TCT>TTT	p.S273F	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	273					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GATGCCAGCAGATTCCATACC	0.343000													12	82					0	0	6.40141e-05	0	0
CAPN3	825	broad.mit.edu	37	15	42652284	42652285	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:42652284_42652285CC>AA	uc001zpn.1	+	1	587_588	c.281_282CC>AA	c.(280-282)CCC>CAA	p.P94Q	CAPN3_uc001zpk.1_Intron|CAPN3_uc001zpl.1_Intron|CAPN3_uc010udf.1_Intron|CAPN3_uc010udg.1_Intron|CAPN3_uc001zpo.1_Missense_Mutation_p.P94Q|CAPN3_uc001zpp.1_Missense_Mutation_p.P94Q	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	94	Calpain catalytic.		Missing (in LGMD2A).		muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		CAGAAGTTCCCCATCCAGTTCG	0.525000													10	282					0	0	6.4e-05	0	0
RAB11A	8766	broad.mit.edu	37	15	66180063	66180063	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:66180063A>G	uc002apk.2	+	5	664	c.536A>G	c.(535-537)AAG>AGG	p.K179R	RAB11A_uc010ujk.1_Silent_p.E147E	NM_004663	NP_004654	P62491	RB11A_HUMAN	Ras-related protein Rab-11A	179					cell cycle|cytokinesis|neuron projection development|plasma membrane to endosome transport|protein localization in plasma membrane|small GTPase mediated signal transduction|vesicle-mediated transport	cleavage furrow|plasma membrane|recycling endosome membrane|trans-Golgi network	GTP binding|GTPase activity|syntaxin binding				0						GTTTCTCAGAAGCAAATGTCA	0.388000													3	73					0	0	0.00024832	0	0
NEO1	4756	broad.mit.edu	37	15	73536798	73536798	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:73536798G>C	uc002avm.3	+	9	1707	c.1565G>C	c.(1564-1566)GGA>GCA	p.G522A	NEO1_uc010ukx.1_Missense_Mutation_p.G522A|NEO1_uc010uky.1_Missense_Mutation_p.G522A|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.G187A	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	522	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CATGGCTCAGGAGAGAGTTCA	0.483000													13	58					0	0	0.000308642	0	0
IREB2	3658	broad.mit.edu	37	15	78755386	78755386	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:78755386G>A	uc002bdr.2	+	3	391	c.229G>A	c.(229-231)GAA>AAA	p.E77K	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.E77K	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	77							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AAGCAATGTTGAAGTGCCCTT	0.363000													53	204					0	0	0.000147903	0	0
CPEB1	64506	broad.mit.edu	37	15	83221280	83221280	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:83221280G>A	uc002bit.2	-	8	1482	c.1345C>T	c.(1345-1347)CTG>TTG	p.L449L	CPEB1_uc002biq.2_Silent_p.L309L|CPEB1_uc002bir.2_Silent_p.L314L|CPEB1_uc002bis.2_Silent_p.L309L|CPEB1_uc010uod.1_Silent_p.L158L|CPEB1_uc010uoe.1_Silent_p.L387L|CPEB1_uc002biu.2_Silent_p.L411L|CPEB1_uc010uof.1_Silent_p.L309L|CPEB1_uc002biv.2_Silent_p.L384L|CPEB1_uc002bip.2_Silent_p.L158L	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	389	RRM 1.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			TATTCACTCAGGCCATCTGGG	0.498000													19	61					0	0	9.7654e-05	0	0
PKD1	5310	broad.mit.edu	37	16	2153649	2153649	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:2153649G>A	uc002cos.1	-	23	8618	c.8409C>T	c.(8407-8409)GGC>GGT	p.G2803G	PKD1_uc002cot.1_Silent_p.G2803G|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2803	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGAAGTGGCAGCCAGGCCCTG	0.672000													8	53					0	0	0.000274275	0	0
KCTD5	54442	broad.mit.edu	37	16	2732753	2732753	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:2732753C>T	uc002crd.2	+	1	259	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_018992	NP_061865	Q9NXV2	KCTD5_HUMAN	potassium channel tetramerisation domain	68	BTB.				interspecies interaction between organisms	cytosol|nucleus|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity				0						ACCCGAAATCCTTCCTGTACC	0.682000													5	68					0	0	3.59834e-05	0	0
TIGD7	91151	broad.mit.edu	37	16	3350564	3350564	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:3350564C>A	uc002cus.2	-	1	837	c.51G>T	c.(49-51)AAG>AAT	p.K17N	ZNF263_uc002cur.2_3'UTR|TIGD7_uc010btj.1_RNA	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	17	HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						TACTTAGAACCTTCATTTTCT	0.328000													8	108					1.06961e-07	2.01327e-06	0.000157383	1	0
CIITA	4261	broad.mit.edu	37	16	11000685	11000685	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:11000685G>A	uc002dai.3	+	11	1469	c.1336G>A	c.(1336-1338)GAC>AAC	p.D446N	CIITA_uc002daj.3_Missense_Mutation_p.D447N|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.D446N|CIITA_uc002dah.2_Missense_Mutation_p.D398N|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	446	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TCCCCAGTACGACTTTGTCTT	0.627000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								19	81					0	0	7.07596e-05	0	0
ACSM2A	123876	broad.mit.edu	37	16	20482505	20482505	+	Missense_Mutation	SNP	C	T	T	rs142316126		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:20482505C>T	uc010bwe.2	+	6	946	c.707C>T	c.(706-708)TCG>TTG	p.S236L	ACSM2A_uc010bwd.1_Intron|ACSM2A_uc010vax.1_Missense_Mutation_p.S157L|ACSM2A_uc002dhf.3_Missense_Mutation_p.S236L|ACSM2A_uc002dhg.3_Missense_Mutation_p.S236L|ACSM2A_uc010vay.1_Missense_Mutation_p.S157L	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	236					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						CATTCCTACTCGAGCCTGGGC	0.502000													9	76					0	0	0.000274275	0	0
LYRM1	57149	broad.mit.edu	37	16	20926983	20926983	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:20926983G>A	uc010bwj.2	+	2	407	c.106G>A	c.(106-108)GAA>AAA	p.E36K	LYRM1_uc010bwi.1_RNA|LYRM1_uc010bwk.2_Intron|LYRM1_uc002dia.3_Missense_Mutation_p.E36K|LYRM1_uc010bwl.2_Missense_Mutation_p.E36K|LYRM1_uc010bwm.2_Intron|LYRM1_uc002dib.2_Missense_Mutation_p.E36K	NM_020424	NP_065157	O43325	LYRM1_HUMAN	LYR motif containing 1	36						nucleus					0						CACCATCAAAGAAAAACAGTA	0.473000													6	90					0	0	3.59834e-05	0	0
OTOA	146183	broad.mit.edu	37	16	21730463	21730463	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:21730463C>T	uc002djh.2	+	15	1640	c.1639C>T	c.(1639-1641)CTG>TTG	p.L547L	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.L468L|OTOA_uc002dji.2_Silent_p.L223L|OTOA_uc010vbk.1_Silent_p.L195L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	561					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GGCTCTGTTCCTGTATGAGCT	0.448000													6	70					0	0	8.12818e-05	0	0
SCNN1G	6340	broad.mit.edu	37	16	23200820	23200820	+	Missense_Mutation	SNP	G	A	A	rs140901058		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:23200820G>A	uc002dlm.1	+	3	585	c.446G>A	c.(445-447)GGA>GAA	p.G149E		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	149	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	GTCTCAGAGGGAAAGCAGCCT	0.577000													23	153					0	0	9.22233e-05	0	0
CCDC101	112869	broad.mit.edu	37	16	28596283	28596283	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:28596283A>G	uc002dqf.2	+	3	310	c.125A>G	c.(124-126)CAT>CGT	p.H42R	uc010vct.1_Intron	NM_138414	NP_612423	Q96ES7	SGF29_HUMAN	coiled-coil domain containing 101	42	Potential.				establishment of protein localization to chromatin|histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|SAGA-type complex	methylated histone residue binding			central_nervous_system(1)	1						CAGAAGACCCATGAGCGGATG	0.547000													3	63					0	0	6.4e-05	0	0
SULT1A1	6817	broad.mit.edu	37	16	28620051	28620051	+	Silent	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:28620051G>T	uc002dqi.2	-	1	599	c.126C>A	c.(124-126)CTC>CTA	p.L42L	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.L42L|SULT1A1_uc002dqk.2_Silent_p.L42L|SULT1A1_uc002dql.2_Silent_p.L42L|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Silent_p.L133L|SULT1A1_uc002dqo.2_Silent_p.L42L|SULT1A1_uc002dqp.2_Silent_p.L42L	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	42					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						AGGTGCTGATGAGCAGGTCAT	0.657000													7	54					1.06961e-07	2.01327e-06	0.000157383	1	0
ZNF646	9726	broad.mit.edu	37	16	31087904	31087904	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:31087904C>T	uc002eap.2	+	2	548	c.259C>T	c.(259-261)CCC>TCC	p.P87S	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	87	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CTTCTCCAATCCCATGGCTCT	0.637000													11	35					0	0	3.86212e-05	0	0
NUP93	9688	broad.mit.edu	37	16	56867144	56867144	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:56867144G>A	uc002eka.2	+	13	1484	c.1363G>A	c.(1363-1365)GTG>ATG	p.V455M	NUP93_uc002ekb.2_Missense_Mutation_p.V332M|NUP93_uc010vhi.1_Missense_Mutation_p.V332M	NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	455					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						CCACTTTACGGTGAACCAGCA	0.567000													6	118					0	0	0.000274275	0	0
CNOT1	23019	broad.mit.edu	37	16	58589751	58589751	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:58589751T>A	uc002env.2	-	20	2834	c.2541A>T	c.(2539-2541)GAA>GAT	p.E847D	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.E842D|CNOT1_uc002enx.2_Missense_Mutation_p.E847D|CNOT1_uc002enz.1_Missense_Mutation_p.E276D	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	847					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AGCTGTTTGCTTCATCATCTA	0.413000													9	59					0	0	0.000442599	0	0
PHLPP2	23035	broad.mit.edu	37	16	71697869	71697869	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:71697869G>A	uc002fax.2	-	12	1924	c.1918C>T	c.(1918-1920)CTG>TTG	p.L640L	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Intron	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	640	LRR 17.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TGCCCTACCAGGACAGGTATG	0.468000													14	59					0	0	0.000422831	0	0
CENPN	55839	broad.mit.edu	37	16	81060211	81060211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:81060211C>T	uc002ffx.2	+	9	1568	c.778C>T	c.(778-780)CCT>TCT	p.P260S	CENPN_uc010vnl.1_Missense_Mutation_p.P226S|CENPN_uc010vnm.1_Missense_Mutation_p.P240S|CENPN_uc002ffy.3_Missense_Mutation_p.P260S	NM_001100624	NP_001094094	Q96H22	CENPN_HUMAN	centromere protein N isoform 2	260					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm					0						TGGAGATTATCCTCAACCACA	0.308000													11	157					0	0	0.00010058	0	0
PKD1L2	114780	broad.mit.edu	37	16	81232478	81232478	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:81232478G>A	uc002fgh.1	-	7	1332	c.1332C>T	c.(1330-1332)GTC>GTT	p.V444V	PKD1L2_uc002fgj.2_Silent_p.V444V	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	444	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCACCAAGTGGACTGTAATGT	0.562000													9	130					0	0	6.40141e-05	0	0
ITGAE	3682	broad.mit.edu	37	17	3638140	3638140	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:3638140T>C	uc002fwo.3	-	21	2725	c.2626A>G	c.(2626-2628)AGA>GGA	p.R876G		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	876	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		TGCAGGTTTCTGGGGTAATTC	0.532000													28	143					0	0	0.000279167	0	0
NLGN2	57555	broad.mit.edu	37	17	7319161	7319161	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:7319161G>A	uc002ggt.1	+	6	1442	c.1369G>A	c.(1369-1371)GAC>AAC	p.D457N		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	457	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCTCTTTACTGACCACCAATG	0.577000													10	35					0	0	3.86212e-05	0	0
SPEM1	374768	broad.mit.edu	37	17	7324290	7324290	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:7324290C>T	uc002ggv.2	+	3	321	c.296C>T	c.(295-297)CCT>CTT	p.P99L	FGF11_uc010vtw.1_Intron	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	99					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				ACCATGGACCCTGTGATGATG	0.592000													11	43					0	0	6.40141e-05	0	0
MYH1	4619	broad.mit.edu	37	17	10404762	10404762	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:10404762T>C	uc002gmo.2	-	27	3497	c.3403A>G	c.(3403-3405)AAA>GAA	p.K1135E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1135	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTCTCTGCTTTGGCCCGGGAG	0.572000													6	45					0	0	3.59834e-05	0	0
CDRT1	374286	broad.mit.edu	37	17	15522499	15522499	+	Silent	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:15522499A>G	uc002gov.3	-	1	520	c.328T>C	c.(328-330)TTG>CTG	p.L110L	TRIM16_uc002gor.1_Intron	NM_006382	NP_006373	O95170	CDRT1_HUMAN	CMT1A duplicated region transcript 1	110											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(2;1.36e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0541)		GTTTTATCCAACATTTGGTTC	0.448000													13	154					0	0	0.000219431	0	0
C17orf102	400591	broad.mit.edu	37	17	32906108	32906108	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:32906108G>A	uc002hie.1	-	1	281	c.192C>T	c.(190-192)TCC>TCT	p.S64S	TMEM132E_uc002hif.2_5'Flank	NM_207454	NP_997337	A2RUQ5	CQ102_HUMAN	hypothetical protein LOC400591	64										ovary(1)	1						CCGCGCCTCTGGAAGAGCGGC	0.667000													9	88					0	0	0.000151284	0	0
RDM1	201299	broad.mit.edu	37	17	34251717	34251717	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:34251717C>T	uc002hkh.2	-	4	508	c.459G>A	c.(457-459)CCG>CCA	p.P153P	RDM1_uc010cty.2_Intron|RDM1_uc010ctz.2_Intron|RDM1_uc010cua.2_Silent_p.P130P|RDM1_uc002hkg.3_Silent_p.P130P|RDM1_uc010cub.2_Intron|RDM1_uc010cud.2_Silent_p.P153P|RDM1_uc010cuf.2_Intron|RDM1_uc010cue.2_Intron|RDM1_uc010cug.2_Intron|RDM1_uc010cuc.2_Intron|RDM1_uc010wco.1_Intron|RDM1_uc010wcp.1_Silent_p.P130P|RDM1_uc002hki.2_Silent_p.P153P	NM_145654	NP_663629	Q8NG50	RDM1_HUMAN	RAD52 motif 1 isoform 1	153					DNA recombination|DNA repair	Cajal body|cytoplasm|nucleolus|PML body	DNA binding|nucleotide binding|RNA binding			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GGCTTTGCTTCGGAAGTGGCA	0.468000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					18	85					0	0	7.07596e-05	0	0
GPR179	440435	broad.mit.edu	37	17	36499253	36499253	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:36499253C>T	uc002hpz.2	-	1	441	c.420G>A	c.(418-420)GGG>GGA	p.G140G		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	140	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTCTTGGGTCCCCCTCGGCCA	0.607000													4	42					0	0	3.59834e-05	0	0
CASC3	22794	broad.mit.edu	37	17	38325581	38325581	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:38325581C>T	uc010cwt.1	+	12	2265	c.1970C>T	c.(1969-1971)CCA>CTA	p.P657L	CASC3_uc002hue.2_Missense_Mutation_p.P657L	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	657	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						TCCCAGGCCCCATCACAGGTA	0.527000													29	127					0	0	0.000339439	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	C	C	rs141357429	by1000genomes	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:39274087G>C	uc002hvz.2	-	1	520	c.481C>G	c.(481-483)CTG>GTG	p.L161V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	161	27.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACTGGACGCAGGcagcagcag	0.323000													3	9					0	0	6.4e-05	0	0
DHX58	79132	broad.mit.edu	37	17	40256929	40256930	+	Missense_Mutation	DNP	CG	AT	AT	rs140286371	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:40256929_40256930CG>AT	uc002hyw.3	-	11	1640_1641	c.1417_1418CG>AT	c.(1417-1419)CGG>ATG	p.R473M	DHX58_uc002hyv.3_RNA|DHX58_uc010wgf.1_Missense_Mutation_p.R466M	NM_024119	NP_077024	Q96C10	DHX58_HUMAN	RNA helicase LGP2	473	Helicase C-terminal.			R -> W (in Ref. 1; BAB13818).	innate immune response	cytoplasm	ATP binding|DNA binding|helicase activity|protein binding|RNA binding|zinc ion binding				0		all_cancers(22;9.73e-07)|all_epithelial(22;3.58e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CTGATCGGCCCGGGCACGGCCC	0.624000													6	64					0	0	6.4e-05	0	0
MPP2	4355	broad.mit.edu	37	17	41959867	41959867	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:41959867G>A	uc010wip.1	-	6	658	c.601C>T	c.(601-603)CGC>TGC	p.R201C	MPP2_uc002ien.1_Missense_Mutation_p.R173C|MPP2_uc010wim.1_Missense_Mutation_p.R145C|MPP2_uc002ieo.1_Missense_Mutation_p.R156C|MPP2_uc010win.1_Missense_Mutation_p.R17C|MPP2_uc010wio.1_Missense_Mutation_p.R145C|MPP2_uc010czm.1_Missense_Mutation_p.R139C	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	180					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		CCCTCCACGCGGAACGTTACA	0.552000													4	34					0	0	0.00024832	0	0
ITGA2B	3674	broad.mit.edu	37	17	42458255	42458256	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:42458255_42458256CC>TA	uc002igt.1	-	13	1416_1417	c.1384_1385GG>TA	c.(1384-1386)GGA>TAA	p.G462*	ITGA2B_uc002igu.1_5'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	462	Extracellular (Potential).|FG-GAP 7.|Potential.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	ACCTGGGTATCCGTTGTCATCG	0.614000													11	104					0	0	6.4e-05	0	0
KIAA1267	284058	broad.mit.edu	37	17	44248223	44248224	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:44248223_44248224GG>TT	uc002ikb.2	-	1	1371_1372	c.1286_1287CC>AA	c.(1285-1287)CCC>CAA	p.P429Q	KIAA1267_uc002ikc.2_Missense_Mutation_p.P429Q|KIAA1267_uc002ikd.2_Missense_Mutation_p.P429Q|KIAA1267_uc010dav.2_Missense_Mutation_p.P429Q	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	429						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				CTACTCACAGGGGTACATGACG	0.446000													11	396					0	0	6.4e-05	0	0
COL1A1	1277	broad.mit.edu	37	17	48263849	48263850	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:48263849_48263850GG>AA	uc002iqm.2	-	49	3959_3960	c.3833_3834CC>TT	c.(3832-3834)CCC>CTT	p.P1278L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1278	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	AGCCTTGGTTGGGGTCAATCCA	0.569000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						14	46					0	0	6.4e-05	0	0
PRR11	55771	broad.mit.edu	37	17	57275069	57275069	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:57275069C>T	uc002ixf.1	+	9	1012	c.933C>T	c.(931-933)ACC>ACT	p.T311T	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	311										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					CAGGTGGAACCCCTCTTACCA	0.408000													7	194					0	0	0.000274275	0	0
TBX2	6909	broad.mit.edu	37	17	59485543	59485543	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:59485543C>T	uc010wox.1	+	7	2096	c.1815C>T	c.(1813-1815)TCC>TCT	p.S605S	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Silent_p.S451S	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	605					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						ccgccgGCTCCCTCTCCCGGA	0.423000													5	12					0	0	0.000157383	0	0
TANC2	26115	broad.mit.edu	37	17	61498334	61498334	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:61498334T>C	uc002jal.3	+	25	5014	c.4991T>C	c.(4990-4992)ATT>ACT	p.I1664T	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.I775T	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1664							binding			ovary(2)	2						CAAGGGTCAATTGGGGGAATC	0.537000													5	93					0	0	0.000602214	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62850750	62850750	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:62850750G>A	uc002jey.2	-	14	5403	c.4872C>T	c.(4870-4872)GCC>GCT	p.A1624A	LRRC37A3_uc010wqg.1_Silent_p.A742A|LRRC37A3_uc002jex.1_Silent_p.A601A|LRRC37A3_uc010wqf.1_Silent_p.A662A	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1624	Cytoplasmic (Potential).					integral to membrane					0						CCTCCGTTGGGGCTTCGCTGT	0.488000													7	133					0	0	0.000442599	0	0
RGS9	8787	broad.mit.edu	37	17	63164317	63164317	+	Splice_Site	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:63164317G>A	uc002jfe.2	+	8	611	c.501_splice	c.e8-1	p.R167_splice	RGS9_uc010dem.2_Splice_Site_p.R167_splice|RGS9_uc002jfd.2_Splice_Site_p.R167_splice|RGS9_uc002jff.2_Splice_Site	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1						intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						TGGCTTTCCAGGGCTGGAAAG	0.542000													3	14					0	0	6.4e-05	0	0
ABCA9	10350	broad.mit.edu	37	17	66992103	66992103	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:66992103C>T	uc002jhu.2	-	26	3631	c.3488G>A	c.(3487-3489)GGG>GAG	p.G1163E	ABCA9_uc010dez.2_Missense_Mutation_p.G1125E	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1163	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					AAAAAATAGCCCTAGAAATCC	0.378000													5	69					0	0	0.000602214	0	0
ABCA10	10349	broad.mit.edu	37	17	67145059	67145059	+	Nonsense_Mutation	SNP	A	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:67145059A>C	uc010dfa.1	-	40	5420	c.4541T>G	c.(4540-4542)TTA>TGA	p.L1514*	ABCA10_uc002jhz.2_RNA|ABCA10_uc010wqs.1_Nonsense_Mutation_p.L506*|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1514					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					ACAGAGTTCTAAGAATACCTA	0.378000													17	80					0	0	0.000422831	0	0
ENPP7	339221	broad.mit.edu	37	17	77709192	77709192	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:77709192G>A	uc002jxa.2	+	3	770	c.750G>A	c.(748-750)ACG>ACA	p.T250T		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	250					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ACGGCATGACGACCGTGGACA	0.607000													7	61					0	0	0.000274275	0	0
RNF213	57674	broad.mit.edu	37	17	78341808	78341809	+	Missense_Mutation	DNP	CC	GA	GA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:78341808_78341809CC>GA	uc002jyh.1	+	19	6462_6463	c.6239_6240CC>GA	c.(6238-6240)CCC>CGA	p.P2080R	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.P462R	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	655										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GCAAAGGACCCCGTCTGTCTGC	0.559000													4	171					0	0	6.4e-05	0	0
PDE6G	5148	broad.mit.edu	37	17	79618115	79618115	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:79618115C>T	uc002kay.3	-	4	397	c.253G>A	c.(253-255)GGC>AGC	p.G85S	PDE6G_uc002kaz.3_RNA	NM_002602	NP_002593	P18545	CNRG_HUMAN	phosphodiesterase 6G	85					platelet activation|visual perception	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity				0	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TAGATGATGCCATATTGGGCC	0.592000													6	73					0	0	3.59834e-05	0	0
PPP4R1	9989	broad.mit.edu	37	18	9570421	9570421	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:9570421G>T	uc002koe.1	-	11	1425	c.1307C>A	c.(1306-1308)CCA>CAA	p.P436Q	PPP4R1_uc002kof.2_5'UTR|PPP4R1_uc010wzo.1_Missense_Mutation_p.P282Q|PPP4R1_uc002kod.1_Missense_Mutation_p.P419Q|PPP4R1_uc010wzp.1_RNA	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	436					protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						GCCAACCTCTGGTCGTAACAT	0.408000													23	99					7.92952e-12	1.51628e-10	0.000586117	1	0
CEP76	79959	broad.mit.edu	37	18	12691399	12691399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:12691399G>A	uc002kri.2	-	7	1048	c.892C>T	c.(892-894)CGA>TGA	p.R298*	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_Nonsense_Mutation_p.R120*|CEP76_uc010wzz.1_Nonsense_Mutation_p.R223*|CEP76_uc010xaa.1_Nonsense_Mutation_p.R120*	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	298					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						TGTGAGGGTCGAATTTGCAAA	0.348000													15	93					0	0	7.07596e-05	0	0
LOC644669	644669	broad.mit.edu	37	18	15316727	15316727	+	RNA	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:15316727G>A	uc002ktd.1	-	5		c.307C>T				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						TTTCTGCCAAGGGTGCAGCCT	0.418000													4	17					0	0	3.59834e-05	0	0
DSG2	1829	broad.mit.edu	37	18	29100904	29100904	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:29100904C>T	uc002kwu.3	+	4	543	c.355C>T	c.(355-357)CGA>TGA	p.R119*		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	119	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CATTCTTGATCGAGAAGAAAC	0.294000													6	53					0	0	0.000157383	0	0
ASXL3	80816	broad.mit.edu	37	18	31325110	31325110	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:31325110G>A	uc010dmg.1	+	12	5353	c.5298G>A	c.(5296-5298)CAG>CAA	p.Q1766Q	ASXL3_uc002kxq.2_Silent_p.Q1473Q	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1766					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGTTGCCACAGCCCAGATTGG	0.517000													9	37					0	0	0.000274275	0	0
SYT4	6860	broad.mit.edu	37	18	40853859	40853859	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:40853859C>T	uc002law.2	-	2	904	c.535G>A	c.(535-537)GGC>AGC	p.G179S	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.G161S|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	179	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						GCTGGCAAGCCACGGGCTTCC	0.443000													6	70					0	0	3.59834e-05	0	0
KIAA1632	57724	broad.mit.edu	37	18	43535055	43535055	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:43535055C>T	uc002lbm.2	-	2	413	c.313G>A	c.(313-315)GAA>AAA	p.E105K	KIAA1632_uc002lbo.1_Missense_Mutation_p.E105K	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	105					autophagy						0						TCTCCCCCTTCCTTTGGGGGC	0.498000													15	59					0	0	0.000422831	0	0
ZNF532	55205	broad.mit.edu	37	18	56648784	56648784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:56648784C>T	uc002lho.2	+	10	3893	c.3346C>T	c.(3346-3348)CCT>TCT	p.P1116S	ZNF532_uc002lhp.2_Missense_Mutation_p.P1114S|ZNF532_uc010xeg.1_Missense_Mutation_p.P1114S|ZNF532_uc002lhr.2_Missense_Mutation_p.P1114S|ZNF532_uc002lhs.2_Missense_Mutation_p.P1114S|ZNF532_uc010xeh.1_Missense_Mutation_p.P204S	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CATCAAGGACCCTGACCTGAA	0.463000													16	70					0	0	0.000308642	0	0
CNDP1	84735	broad.mit.edu	37	18	72229330	72229330	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:72229330C>T	uc002llq.2	+	5	726	c.515C>T	c.(514-516)GCT>GTT	p.A172V	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	172					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		CCTGTCTTGGCTTGGATCAAT	0.512000													19	69					0	0	0.000175454	0	0
AP3D1	8943	broad.mit.edu	37	19	2115260	2115260	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:2115260G>A	uc002luz.2	-	20	2530	c.2307C>T	c.(2305-2307)GCC>GCT	p.A769A	AP3D1_uc002luy.2_Silent_p.A678A|AP3D1_uc002lva.2_Silent_p.A769A	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	769					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGGGCAGGGGCGATGTCCT	0.502000													6	33					0	0	3.59834e-05	0	0
DOT1L	84444	broad.mit.edu	37	19	2216468	2216468	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:2216468G>C	uc002lvb.3	+	20	2148	c.2112G>C	c.(2110-2112)TTG>TTC	p.L704F	DOT1L_uc002lvc.1_5'UTR|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_5'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	704						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCTCACTTGAGCAGCATGA	0.667000													4	73					0	0	0.000602214	0	0
INSR	3643	broad.mit.edu	37	19	7170680	7170681	+	Missense_Mutation	DNP	CC	AA	AA	rs35828695		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:7170680_7170681CC>AA	uc002mgd.1	-	6	1459_1460	c.1350_1351GG>TT	c.(1348-1353)CAGGGG>CATTGG	p.450_451QG>HW	INSR_uc002mge.1_Missense_Mutation_p.450_451QG>HW|INSR_uc002mgf.2_Missense_Mutation_p.450_451QG>HW	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	450_451					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AAGAGTTTCCCCTGAGTGATGG	0.480000													14	542					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9009652	9009653	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:9009652_9009653CC>AT	uc002mkp.2	-	39	39277_39278	c.39073_39074GG>AT	c.(39073-39075)GGG>ATG	p.G13025M	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATGTCCTCCCCATACTGCAGA	0.550000													6	78					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9088055	9088056	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:9088055_9088056CG>AT	uc002mkp.2	-	1	3963_3964	c.3759_3760CG>AT	c.(3757-3762)CTCGGA>CTATGA	p.G1254*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1254	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCGTGTGCTCCGAGGTGGATGC	0.510000													8	381					0	0	6.4e-05	0	0
MAST1	22983	broad.mit.edu	37	19	12962960	12962960	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:12962960T>C	uc002mvm.2	+	9	1036	c.908T>C	c.(907-909)CTG>CCG	p.L303P	MAST1_uc002mvk.2_Missense_Mutation_p.L299P	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	303					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TACCACCTGCTGGAGGCGGCC	0.642000													9	52					0	0	0.000442599	0	0
GIPC1	10755	broad.mit.edu	37	19	14591193	14591193	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:14591193C>T	uc002myt.2	-	6	849	c.579G>A	c.(577-579)GAG>GAA	p.E193E	GIPC1_uc002myu.2_Silent_p.E193E|GIPC1_uc002myv.2_Silent_p.E96E|GIPC1_uc002myw.2_Silent_p.E96E|GIPC1_uc002myx.2_Silent_p.E193E|GIPC1_uc002myy.2_Silent_p.E96E	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	193	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						GCCGGGCCACCTCGTAGTGCC	0.662000											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	74					0	0	0.000274275	0	0
CYP4F12	66002	broad.mit.edu	37	19	15784417	15784418	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:15784417_15784418GG>AA	uc002nbl.2	+	2	139_140	c.78_79GG>AA	c.(76-81)GTGGGC>GTAAGC	p.G27S	CYP4F12_uc010xoo.1_Missense_Mutation_p.G27S|CYP4F12_uc010xop.1_Missense_Mutation_p.G27S	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					TGCTGGTTGTGGGCTCCTGGCT	0.629000													9	105					0	0	6.4e-05	0	0
ZNF90	7643	broad.mit.edu	37	19	20229365	20229365	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:20229365C>T	uc002nor.2	+	4	1141	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	ZNF90_uc002nos.1_Intron|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	334	C2H2-type 6.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATAAGAGAATCCATACTGGAG	0.408000													6	12					0	0	3.59834e-05	0	0
LRFN3	79414	broad.mit.edu	37	19	36435675	36435675	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:36435675C>T	uc002oco.2	+	3	2093	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	547	Helical; (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCGGCGTCATCGTAGCCTCGG	0.677000													6	25					0	0	8.12818e-05	0	0
PAK4	10298	broad.mit.edu	37	19	39667342	39667342	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:39667342C>T	uc002okj.1	+	9	1933	c.1472C>T	c.(1471-1473)CCC>CTC	p.P491L	PAK4_uc002okl.1_Missense_Mutation_p.P491L|PAK4_uc002okn.1_Missense_Mutation_p.P491L|PAK4_uc002okm.1_Missense_Mutation_p.P338L|PAK4_uc002oko.1_Missense_Mutation_p.P338L|PAK4_uc002okp.1_Missense_Mutation_p.P401L	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	491	Protein kinase.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			TCCCGCCTTCCCTACGGGCCA	0.667000													7	80					0	0	0.000157383	0	0
ATP5SL	55101	broad.mit.edu	37	19	41942339	41942340	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:41942339_41942340CC>TT	uc002oqw.1	-	3	259_260	c.253_254GG>AA	c.(253-255)GGC>AAC	p.G85N	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Missense_Mutation_p.G91N|ATP5SL_uc010xwa.1_Missense_Mutation_p.G91N|ATP5SL_uc002oqx.1_Intron|ATP5SL_uc002oqy.1_Missense_Mutation_p.G85N|ATP5SL_uc002oqz.1_Intron|ATP5SL_uc002ora.1_Missense_Mutation_p.G72N|ATP5SL_uc010xwb.1_Intron	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	85										large_intestine(1)|breast(1)	2						GGCACCTGCGCCGTATGGACCA	0.564000													17	84					0	0	6.4e-05	0	0
ERF	2077	broad.mit.edu	37	19	42752930	42752930	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:42752930T>G	uc002ote.3	-	4	1492	c.1334A>C	c.(1333-1335)GAT>GCT	p.D445A	ERF_uc002otd.3_Missense_Mutation_p.D176A	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	445					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				CTCATCCTCATCACTGATGTC	0.672000													8	101					0	0	0.000274275	0	0
PSG3	5671	broad.mit.edu	37	19	43242965	43242966	+	Missense_Mutation	DNP	CG	AT	AT	rs149473391	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:43242965_43242966CG>AT	uc002oue.2	-	2	472_473	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.R136M	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	114	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATTC	0.460000													9	320					0	0	6.4e-05	0	0
PSG8	440533	broad.mit.edu	37	19	43259419	43259419	+	Splice_Site	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:43259419C>T	uc002ouo.2	-	4	808	c.710_splice	c.e4-1	p.P237_splice	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Splice_Site_p.P76_splice|PSG8_uc002ouh.2_Splice_Site_p.P237_splice|PSG8_uc010ein.2_Splice_Site_p.P115_splice|PSG8_uc002ouj.3_Splice_Site_p.P19_splice|PSG8_uc002ouk.3_Splice_Site_p.P76_splice|PSG8_uc002oul.3_Splice_Site_p.P237_splice|PSG8_uc002oum.3_Splice_Site_p.P144_splice|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Splice_Site_p.P144_splice	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform							extracellular region					0		Prostate(69;0.00899)				GGCAGCTTCGCTGTGTGGATA	0.483000													35	178					0	0	0.000509022	0	0
DMWD	1762	broad.mit.edu	37	19	46289702	46289702	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:46289702G>A	uc002pdj.1	-	3	1098	c.1052C>T	c.(1051-1053)ACC>ATC	p.T351I	DMWD_uc002pdk.1_Missense_Mutation_p.T351I|DMWD_uc010eko.1_Missense_Mutation_p.T36I	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	351	WD 3.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		GGACCACACGGTGACCAGGTC	0.642000													10	65					0	0	0.00010058	0	0
FOXA3	3171	broad.mit.edu	37	19	46375598	46375598	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:46375598C>T	uc002pdr.2	+	2	532	c.335C>T	c.(334-336)CCC>CTC	p.P112L		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	112				RPL -> AP (in Ref. 1; AAA58477).	brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		TATCGGCGGCCCCTGGCACAC	0.647000													13	50					0	0	0.000308642	0	0
CPT1C	126129	broad.mit.edu	37	19	50216782	50216782	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:50216782G>A	uc002ppj.2	+	19	2537	c.2332G>A	c.(2332-2334)GAG>AAG	p.E778K	CPT1C_uc002ppk.2_Missense_Mutation_p.E767K|CPT1C_uc010eng.2_Missense_Mutation_p.E778K|CPT1C_uc010enh.2_Missense_Mutation_p.E778K|CPT1C_uc010eni.1_Missense_Mutation_p.E346K	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	778	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GTCAGGGAAGGAGAACTCCAG	0.607000													13	79					0	0	0.000151284	0	0
SIGLEC6	946	broad.mit.edu	37	19	52023452	52023452	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:52023452G>A	uc002pwy.2	-	8	1408	c.1246C>T	c.(1246-1248)CCC>TCC	p.P416S	SIGLEC6_uc002pwz.2_Missense_Mutation_p.P400S|SIGLEC6_uc002pxa.2_3'UTR|SIGLEC6_uc010ydb.1_Missense_Mutation_p.P353S|SIGLEC6_uc010ydc.1_3'UTR|SIGLEC6_uc010eoz.1_3'UTR	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	416	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TCTGAGATGGGGCCAGCCTCA	0.502000													20	201					0	0	0.000229342	0	0
ZNF611	81856	broad.mit.edu	37	19	53208989	53208989	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:53208989G>A	uc002pzz.2	-	7	1636	c.1319C>T	c.(1318-1320)TCC>TTC	p.S440F	ZNF611_uc010eqc.2_Missense_Mutation_p.S370F|ZNF611_uc010ydo.1_Missense_Mutation_p.S370F|ZNF611_uc010ydr.1_Missense_Mutation_p.S371F|ZNF611_uc010ydp.1_Missense_Mutation_p.S440F|ZNF611_uc010ydq.1_Missense_Mutation_p.S440F|ZNF611_uc002qaa.3_Missense_Mutation_p.S370F	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	440	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		GCATACAAGGGATGACTTGTG	0.403000													10	157					0	0	3.86212e-05	0	0
ZNF347	84671	broad.mit.edu	37	19	53644814	53644814	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:53644814G>T	uc002qbb.1	-	5	1336	c.1267C>A	c.(1267-1269)CAC>AAC	p.H423N	ZNF347_uc010eql.1_Missense_Mutation_p.H424N|ZNF347_uc002qbc.1_Missense_Mutation_p.H424N	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	423	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TCTCCAGTGTGAATTCTCCAG	0.428000													9	129					4.68919e-08	8.87254e-07	3.86212e-05	1	0
KIR2DS4	3809	broad.mit.edu	37	19	55354372	55354373	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:55354372_55354373CG>AT	uc002qhm.1	+	6	760_761	c.714_715CG>AT	c.(712-717)ACCGGT>ACATGT	p.G239C	KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Intron|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	239	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GCTCCAAAACCGGTGAGTACAG	0.500000													6	205					0	0	6.4e-05	0	0
NLRP13	126204	broad.mit.edu	37	19	56424571	56424571	+	Silent	SNP	G	A	A	rs142264094	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:56424571G>A	uc010ygg.1	-	5	637	c.612C>T	c.(610-612)ATC>ATT	p.I204I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	204							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATGTATTACGGATATATACGT	0.498000													21	160					0	0	0.000229342	0	0
PEG3	5178	broad.mit.edu	37	19	57325750	57325750	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:57325750G>A	uc002qnu.2	-	7	4411	c.4060C>T	c.(4060-4062)CAT>TAT	p.H1354Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H1325Y|PEG3_uc002qnv.2_Missense_Mutation_p.H1354Y|PEG3_uc002qnw.2_Missense_Mutation_p.H1230Y|PEG3_uc002qnx.2_Missense_Mutation_p.H1228Y|PEG3_uc010etr.2_Missense_Mutation_p.H1354Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1354	Glu-rich.|C2H2-type 10.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTTCCAGATGAAGCTCCTTA	0.363000													8	34					0	0	0.000442599	0	0
ZSCAN22	342945	broad.mit.edu	37	19	58849896	58849896	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr19:58849896G>A	uc002qsc.2	+	3	827	c.680G>A	c.(679-681)AGG>AAG	p.R227K	ZSCAN22_uc010yhz.1_Missense_Mutation_p.G222R	NM_181846	NP_862829	P10073	ZSC22_HUMAN	zinc finger and SCAN domain containing 22	227					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0289)		GGTGCCTCGAGGAACAGTTCT	0.517000													28	135					0	0	0.000339439	0	0
ALLC	55821	broad.mit.edu	37	2	3743413	3743413	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:3743413C>T	uc010ewt.2	+	8	779	c.618C>T	c.(616-618)GTC>GTT	p.V206V	ALLC_uc002qyf.2_5'UTR	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	225							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		TTGGGGGTGTCTGTGTAGGAT	0.453000										HNSCC(21;0.051)			7	35					0	0	0.000157383	0	0
APOB	338	broad.mit.edu	37	2	21227313	21227313	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:21227313C>T	uc002red.2	-	28	12043	c.11915G>A	c.(11914-11916)GGA>GAA	p.G3972E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3972					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTGCGCTTTTCCTTCCCATTC	0.463000													44	360					0	0	0.000147903	0	0
APOB	338	broad.mit.edu	37	2	21233505	21233505	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:21233505C>T	uc002red.2	-	26	6363	c.6235G>A	c.(6235-6237)GAA>AAA	p.E2079K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2079	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCAAAATATTCTTGCAAGGTC	0.343000													53	555					0	0	0.000147903	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43939501	43939501	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:43939501C>T	uc010yny.1	+	15	2522	c.2439C>T	c.(2437-2439)ACC>ACT	p.T813T	PLEKHH2_uc002rte.3_3'UTR|PLEKHH2_uc002rtf.3_Silent_p.T812T	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	813	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GCAAACCCACCATGAAGGGAT	0.488000													31	220					0	0	0.000409698	0	0
PPM1B	5495	broad.mit.edu	37	2	44428393	44428394	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:44428393_44428394GG>TT	uc002rtt.2	+	2	483_484	c.55_56GG>TT	c.(55-57)GGG>TTG	p.G19L	PPM1B_uc002rts.2_Missense_Mutation_p.G19L|PPM1B_uc002rtu.2_Missense_Mutation_p.G19L|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.G19L|PPM1B_uc002rtx.2_Missense_Mutation_p.G19L	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	19					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TCATGGTGCTGGGAATGGTTTA	0.406000													11	505					0	0	6.4e-05	0	0
ERLEC1	27248	broad.mit.edu	37	2	54041754	54041754	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:54041754T>A	uc002rxl.2	+	12	1581	c.1301T>A	c.(1300-1302)CTA>CAA	p.L434Q	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Intron|ERLEC1_uc002rxn.2_Missense_Mutation_p.L380Q	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	434					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						ACTGTAAAACTAAAGTAAGTT	0.313000													7	34					0	0	0.000274275	0	0
CCDC85A	114800	broad.mit.edu	37	2	56611443	56611443	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:56611443G>A	uc002rzn.2	+	6	2117	c.1615G>A	c.(1615-1617)GGA>AGA	p.G539R		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	539										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTCGTGTCCTGGAATTAGGCA	0.413000													17	75					0	0	0.000295444	0	0
ANTXR1	84168	broad.mit.edu	37	2	69271912	69271912	+	Missense_Mutation	SNP	G	A	A	rs141240644	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:69271912G>A	uc002sfg.2	+	3	619	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	ANTXR1_uc002sfe.2_Missense_Mutation_p.R88Q|ANTXR1_uc002sff.2_Missense_Mutation_p.R88Q|ANTXR1_uc002sfd.2_Missense_Mutation_p.R88Q	NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	88	Extracellular (Potential).|VWFA.				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						TTCTCCACCCGAGGAACAACC	0.433000									Familial_Infantile_Hemangioma				8	74					0	0	0.000274275	0	0
DYSF	8291	broad.mit.edu	37	2	71908140	71908140	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:71908140G>A	uc002sie.2	+	53	6332	c.5956G>A	c.(5956-5958)GAA>AAA	p.E1986K	DYSF_uc010feg.2_Missense_Mutation_p.E2017K|DYSF_uc010feh.2_Missense_Mutation_p.E1993K|DYSF_uc002sig.3_Missense_Mutation_p.E1972K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E2007K|DYSF_uc010fef.2_Missense_Mutation_p.E2024K|DYSF_uc010fei.2_Missense_Mutation_p.E2003K|DYSF_uc010fek.2_Missense_Mutation_p.E2004K|DYSF_uc010fej.2_Missense_Mutation_p.E1994K|DYSF_uc010fel.2_Missense_Mutation_p.E1973K|DYSF_uc010feo.2_Missense_Mutation_p.E2018K|DYSF_uc010fem.2_Missense_Mutation_p.E2008K|DYSF_uc010fen.2_Missense_Mutation_p.E2025K|DYSF_uc002sif.2_Missense_Mutation_p.E1987K|DYSF_uc010yqy.1_Missense_Mutation_p.E867K|DYSF_uc010yqz.1_Missense_Mutation_p.E747K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1986	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGGCAAGCTGGAAATGACCTT	0.572000													5	45					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	2	89512991	89512991	+	RNA	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:89512991C>T	uc010ytr.1	-	23		c.2897G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AAATCTGTCCCAGATCCACTG	0.493000													6	78					0	0	0.000442599	0	0
TUBA3D	113457	broad.mit.edu	37	2	132235846	132235846	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:132235846G>A	uc002tsu.3	+	2	220	c.113G>A	c.(112-114)AGT>AAT	p.S38N		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	38					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		CAAATGCCAAGTGATAAAACC	0.557000													8	90					0	0	0.000274275	0	0
ZEB2	9839	broad.mit.edu	37	2	145155984	145155984	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:145155984G>C	uc002tvu.2	-	8	3250	c.2770C>G	c.(2770-2772)CCA>GCA	p.P924A	ZEB2_uc002tvv.2_Missense_Mutation_p.P918A|ZEB2_uc010zbm.1_Missense_Mutation_p.P895A|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.P953A	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	924						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCCAGTCCTGGGTATGGTCGT	0.507000													4	156					0	0	0.000602214	0	0
KCNJ3	3760	broad.mit.edu	37	2	155566133	155566133	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:155566133G>A	uc002tyv.1	+	2	916	c.721G>A	c.(721-723)GGT>AGT	p.G241S	KCNJ3_uc010zce.1_Intron	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	241	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GACACCTGAGGGTGAGTTCCT	0.443000													10	75					0	0	0.00010058	0	0
IFIH1	64135	broad.mit.edu	37	2	163174366	163174367	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:163174366_163174367CG>AT	uc002uce.2	-	1	673_674	c.451_452CG>AT	c.(451-453)CGG>ATG	p.R151M	IFIH1_uc002ucf.2_Missense_Mutation_p.R151M	NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	151	CARD 2.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						GACACCTACCCGGTTTCTGTCT	0.490000													12	483					0	0	6.4e-05	0	0
LRP2	4036	broad.mit.edu	37	2	170009450	170009450	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:170009450C>T	uc002ues.2	-	67	12533	c.12320G>A	c.(12319-12321)GGG>GAG	p.G4107E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4107	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGAGCCCTCCCCTCGCACAGT	0.468000													34	126					0	0	0.000109025	0	0
KIAA1715	80856	broad.mit.edu	37	2	176812397	176812397	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:176812397G>C	uc002ukc.1	-	9	710	c.517C>G	c.(517-519)CAA>GAA	p.Q173E	KIAA1715_uc010zer.1_Missense_Mutation_p.Q173E|KIAA1715_uc010fqw.1_Missense_Mutation_p.Q239E|KIAA1715_uc010zes.1_Missense_Mutation_p.Q175E|KIAA1715_uc002ukd.1_Missense_Mutation_p.Q50E|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	173	Cytoplasmic (Potential).					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			AGGTTTCTTTGAGCTGCAGTT	0.443000													7	90					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179437307	179437307	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:179437307C>T	uc010zfg.1	-	275	66072	c.65848G>A	c.(65848-65850)GAT>AAT	p.D21950N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D15645N|TTN_uc010zfi.1_Missense_Mutation_p.D15578N|TTN_uc010zfj.1_Missense_Mutation_p.D15453N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22877							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTGGTGTATCGAGAACTCTA	0.418000													12	73					0	0	6.40141e-05	0	0
TTN	7273	broad.mit.edu	37	2	179455439	179455439	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:179455439C>T	uc010zfg.1	-	253	53533	c.53309G>A	c.(53308-53310)GGA>GAA	p.G17770E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G11465E|TTN_uc010zfi.1_Missense_Mutation_p.G11398E|TTN_uc010zfj.1_Missense_Mutation_p.G11273E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18697							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATGTATTTCCTTCATAGAG	0.438000													20	111					0	0	9.7654e-05	0	0
TTN	7273	broad.mit.edu	37	2	179577951	179577951	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:179577951C>T	uc010zfg.1	-	90	23402	c.23178G>A	c.(23176-23178)AGG>AGA	p.R7726R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R4387R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8653							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGGTATTTCCTTCCACTAC	0.438000													9	23					0	0	0.000274275	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187692974	187692974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:187692974C>T	uc002upu.1	-	9	1679	c.1639G>A	c.(1639-1641)GGC>AGC	p.G547S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	547					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CATTTACAGCCTTTGGTCATC	0.393000													7	32					0	0	0.000157383	0	0
COL5A2	1290	broad.mit.edu	37	2	189907957	189907957	+	Missense_Mutation	SNP	C	T	T	rs142186131		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:189907957C>T	uc002uqk.2	-	48	3666	c.3391G>A	c.(3391-3393)GGT>AGT	p.G1131S	COL5A2_uc010frx.2_Missense_Mutation_p.G707S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1131					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCATGATCACCTTTGTCACCA	0.423000													6	43					0	0	0.000157383	0	0
PLCL1	5334	broad.mit.edu	37	2	198949115	198949115	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:198949115G>A	uc010fsp.2	+	2	1165	c.874G>A	c.(874-876)GAA>AAA	p.E292K	PLCL1_uc002uuv.3_Missense_Mutation_p.E213K	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	292					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GAAGAGCAAGGAAAAACTAAC	0.393000													23	63					0	0	0.000586117	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172439	207172439	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:207172439G>A	uc002vbp.2	+	5	3437	c.3187G>A	c.(3187-3189)GAA>AAA	p.E1063K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1063							nucleic acid binding|zinc ion binding			ovary(3)	3						TTTTTTGAAGGAAAAACATGT	0.323000													14	75					0	0	0.000566183	0	0
PER2	8864	broad.mit.edu	37	2	239180104	239180104	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:239180104G>A	uc002vyc.2	-	6	858	c.621C>T	c.(619-621)ATC>ATT	p.I207I	PER2_uc010znv.1_Silent_p.I207I|PER2_uc010znw.1_Silent_p.I207I|PER2_uc010fyx.1_Silent_p.I207I	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	207	PAS 1.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CCTGGTCAGAGATGTACAGGA	0.522000													15	78					0	0	7.07596e-05	0	0
TMC2	117532	broad.mit.edu	37	20	2597740	2597740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:2597740G>A	uc002wgf.1	+	16	1978	c.1963G>A	c.(1963-1965)GGC>AGC	p.G655S	TMC2_uc002wgg.1_Missense_Mutation_p.G639S	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	655	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CTATGCTCCAGGCCTGGTGGG	0.567000													7	35					0	0	0.000442599	0	0
SMOX	54498	broad.mit.edu	37	20	4162833	4162833	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:4162833C>T	uc002wkm.1	+	5	908	c.707C>T	c.(706-708)CCC>CTC	p.P236L	SMOX_uc002wkk.1_Missense_Mutation_p.P236L|SMOX_uc002wkl.1_Missense_Mutation_p.P236L|SMOX_uc002wkn.1_Intron|SMOX_uc002wkp.2_Missense_Mutation_p.P236L|SMOX_uc010zqo.1_Missense_Mutation_p.P213L|SMOX_uc002wko.1_Missense_Mutation_p.P236L	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	236					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	CACATCATCCCCTCGGGCTTC	0.647000													8	34					0	0	0.000274275	0	0
PLCB1	23236	broad.mit.edu	37	20	8637901	8637901	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:8637901G>A	uc002wnb.2	+	8	668	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	PLCB1_uc010zrb.1_Missense_Mutation_p.R121Q|PLCB1_uc002wna.2_Missense_Mutation_p.R222Q|PLCB1_uc002wnc.1_Missense_Mutation_p.R121Q	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	222					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTTTGCCCTCGACCTGAAATT	0.383000													13	77					0	0	9.7654e-05	0	0
PAK7	57144	broad.mit.edu	37	20	9546931	9546931	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:9546931G>A	uc002wnl.2	-	6	1636	c.1091C>T	c.(1090-1092)TCG>TTG	p.S364L	PAK7_uc002wnk.2_Missense_Mutation_p.S364L|PAK7_uc002wnj.2_Missense_Mutation_p.S364L|PAK7_uc010gby.1_Missense_Mutation_p.S364L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	364	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGAATAGCCCGATTTGCTTTG	0.562000													20	80					0	0	0.000175454	0	0
JAG1	182	broad.mit.edu	37	20	10639139	10639139	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:10639139C>T	uc002wnw.2	-	4	1187	c.671G>A	c.(670-672)TGG>TAG	p.W224*		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	224	Extracellular (Potential).|DSL.		W -> C (in ALGS1).		angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						GGGGCCCATCCAGCCTTCCAT	0.507000									Alagille_Syndrome				13	84					0	0	0.000219431	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566131	19566131	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:19566131C>T	uc002wrl.2	+	6	752	c.555C>T	c.(553-555)GGC>GGT	p.G185G		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	185	Alpha-1.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CCATCGTGGGCTCAGCGGTAT	0.532000													38	170					0	0	0.000374591	0	0
GDF5	8200	broad.mit.edu	37	20	34022051	34022052	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:34022051_34022052GG>AA	uc002xck.1	-	2	1480_1481	c.1161_1162CC>TT	c.(1159-1164)CGCCAG>CGTTAG	p.Q388*	GDF5_uc010gfc.1_Nonsense_Mutation_p.Q388*|uc002xcj.2_Missense_Mutation_p.A155T|GDF5_uc010zvc.1_Nonsense_Mutation_p.Q388*	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	388					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CGCTTGCCCTGGCGAGTGGCCA	0.584000													17	174					0	0	6.4e-05	0	0
RBM12	10137	broad.mit.edu	37	20	34241050	34241050	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:34241050G>A	uc002xdq.2	-	3	2427	c.2195C>T	c.(2194-2196)GCC>GTC	p.A732V	CPNE1_uc010zvj.1_Intron|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.A732V|RBM12_uc002xds.2_Missense_Mutation_p.A732V	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	732	Gly-rich.|Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			TGGCCCAAAGGCATTTGATCC	0.507000													22	122					0	0	0.000375601	0	0
TOX2	84969	broad.mit.edu	37	20	42697318	42697318	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:42697318C>T	uc002xlf.3	+	8	1476	c.1459C>T	c.(1459-1461)CTC>TTC	p.L487F	TOX2_uc010ggo.2_Missense_Mutation_p.L505F|TOX2_uc002xle.3_Missense_Mutation_p.L463F|TOX2_uc010ggp.2_Missense_Mutation_p.L463F|TOX2_uc002xlg.2_Missense_Mutation_p.L304F|TOX2_uc010zwk.1_Missense_Mutation_p.L383F	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			ATCGCTCTACCTCACCTAATC	0.632000													6	25					0	0	8.12818e-05	0	0
SEMG1	6406	broad.mit.edu	37	20	43836284	43836284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:43836284C>T	uc002xni.2	+	2	403	c.346C>T	c.(346-348)CAT>TAT	p.H116Y	SEMG1_uc002xnj.2_Missense_Mutation_p.H116Y|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.H116Y	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	116					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AGGCAGAGACCATGATAAATC	0.403000													11	47					0	0	6.40141e-05	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44486602	44486602	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:44486602C>T	uc002xqd.2	+	1	341	c.138C>T	c.(136-138)TCC>TCT	p.S46S	ACOT8_uc002xqa.1_5'Flank|ACOT8_uc010zxe.1_5'Flank|ACOT8_uc002xqc.1_5'Flank|ACOT8_uc010zxf.1_5'Flank|ZSWIM3_uc010zxg.1_5'UTR	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	46							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				ATGGCACCTCCATCCGCGAAG	0.532000													9	60					0	0	0.000274275	0	0
MMP9	4318	broad.mit.edu	37	20	44644977	44644977	+	Silent	SNP	C	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:44644977C>G	uc002xqz.2	+	13	2113	c.2094C>G	c.(2092-2094)ACC>ACG	p.T698T		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	698	Hemopexin-like 4.				collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	GCTACGTGACCTATGACATCC	0.577000													3	67					0	0	0.00024832	0	0
SLC12A5	57468	broad.mit.edu	37	20	44670038	44670038	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:44670038G>A	uc010zxl.1	+	8	1070	c.994G>A	c.(994-996)GGA>AGA	p.G332R	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.G309R	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	332	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGCTTGGGAAGGAAATGAGAC	0.552000													13	58					0	0	0.000219431	0	0
SLC2A10	81031	broad.mit.edu	37	20	45355517	45355518	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:45355517_45355518CT>TC	uc002xsl.2	+	3	1400_1401	c.1303_1304CT>TC	c.(1303-1305)CTC>TCC	p.L435S		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	435	Helical; Name=10; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTGGCTTGTCCTCAGCGAGATC	0.589000													10	130					0	0	6.4e-05	0	0
PREX1	57580	broad.mit.edu	37	20	47276592	47276592	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:47276592C>T	uc002xtw.1	-	16	1769	c.1746G>A	c.(1744-1746)GAG>GAA	p.E582E		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	582	DEP 2.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			ACTCGCTCTTCTCCAGCACTG	0.433000													13	48					0	0	0.000308642	0	0
ZNFX1	57169	broad.mit.edu	37	20	47864578	47864578	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:47864578C>T	uc002xui.2	-	14	5230	c.4983G>A	c.(4981-4983)CAG>CAA	p.Q1661Q		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1661							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TAAGCCGTTCCTGGCTGGTTG	0.493000													19	92					0	0	7.07596e-05	0	0
CABLES2	81928	broad.mit.edu	37	20	60971439	60971440	+	Missense_Mutation	DNP	CG	AT	AT	rs143877315		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:60971439_60971440CG>AT	uc002ycv.2	-	3	465_466	c.458_459CG>AT	c.(457-459)CCG>CAT	p.P153H		NM_031215	NP_112492	Q9BTV7	CABL2_HUMAN	Cdk5 and Abl enzyme substrate 2	153					cell cycle|cell division|regulation of cell cycle|regulation of cell division		cyclin-dependent protein kinase regulator activity			pancreas(1)	1	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)			CTTTATGTCTCGGTGATCCAGA	0.584000													8	384					0	0	6.4e-05	0	0
C20orf151	140893	broad.mit.edu	37	20	60989120	60989120	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr20:60989120C>T	uc002ycw.1	-	10	1444	c.1287G>A	c.(1285-1287)GAG>GAA	p.E429E		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	429											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			TGGCTGCAGCCTCTGTCCTCT	0.726000													3	8					0	0	0.00024832	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994463	45994464	+	Nonsense_Mutation	DNP	CA	AG	AG			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr21:45994463_45994464CA>AG	uc002zfk.1	+	1	858_859	c.828_829CA>AG	c.(826-831)TGCAAG>TGAGAG	p.276_277CK>*E	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	276_277	36 X 5 AA repeats of C-C-X(3).|25.					keratin filament					0						CTGTCTGCTGCAAGCCTGTGTG	0.624000													11	78					0	0	6.4e-05	0	0
PRMT2	3275	broad.mit.edu	37	21	48064250	48064250	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr21:48064250C>T	uc002zjx.2	+	5	491	c.177C>T	c.(175-177)ATC>ATT	p.I59I	PRMT2_uc002zjw.2_Silent_p.I59I|PRMT2_uc002zjy.2_Silent_p.I59I|PRMT2_uc010gqm.2_Silent_p.I59I|PRMT2_uc011aga.1_Silent_p.I59I|PRMT2_uc011agb.1_Silent_p.I59I|PRMT2_uc011agc.1_Silent_p.I59I|PRMT2_uc002zjz.1_5'UTR	NM_206962	NP_996845	P55345	ANM2_HUMAN	HMT1 hnRNP methyltransferase-like 1	59	SH3.				developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			ovary(1)	1	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		AAATTCTTATCCTGAGACAAA	0.443000													12	45					0	0	0.000219431	0	0
LOC96610	96610	broad.mit.edu	37	22	22735666	22735666	+	RNA	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr22:22735666G>A	uc011aim.1	+	46		c.5462G>A								Parts of antibodies, mostly variable regions.												0						TCCAGTCTGAGGATGAGGCTG	0.557000													7	72					0	0	0.00010058	0	0
CACNG2	10369	broad.mit.edu	37	22	36960482	36960482	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr22:36960482G>A	uc003aps.1	-	4	1170	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	296					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GAACCTGGAGGAAGCTGTTAT	0.612000													17	80					0	0	0.000422831	0	0
CSF2RB	1439	broad.mit.edu	37	22	37325760	37325760	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr22:37325760C>T	uc003aqa.3	+	6	846	c.629C>T	c.(628-630)GCC>GTC	p.A210V	CSF2RB_uc003aqc.3_Missense_Mutation_p.A210V	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	210	Fibronectin type-III 1.|Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	ACCTACGTGGCCCGAGTACGG	0.657000													9	25					0	0	0.000442599	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120938	38120938	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr22:38120938G>A	uc003atr.2	+	7	2646	c.2375G>A	c.(2374-2376)AGA>AAA	p.R792K	TRIOBP_uc003atu.2_Missense_Mutation_p.R620K|TRIOBP_uc003atq.1_Missense_Mutation_p.R792K|TRIOBP_uc003ats.1_Missense_Mutation_p.R620K	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	792					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GACAACCCCAGAACATCCTGT	0.537000													6	50					0	0	3.59834e-05	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653866	46653866	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr22:46653866G>A	uc003bhh.2	-	1	5354	c.5354C>T	c.(5353-5355)TCG>TTG	p.S1785L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1785	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GATTTTAGACGAGCTTTCAGG	0.423000													53	174					0	0	0.000147903	0	0
GRM7	2917	broad.mit.edu	37	3	7188208	7188208	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:7188208C>T	uc003bqm.2	+	2	863	c.589C>T	c.(589-591)CGC>TGC	p.R197C	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R197C|GRM7_uc003bql.2_Missense_Mutation_p.R197C	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	197	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CTTCTTCTCTCGCGTGGTGCC	0.522000													8	83					0	0	0.000442599	0	0
NEK10	152110	broad.mit.edu	37	3	27173431	27173431	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:27173431G>A	uc010hfk.2	-	13	1357	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	NEK10_uc010hfj.2_Silent_p.F319F			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	1064							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GGGATTTCTTGAATCTCTCTA	0.323000													6	81					0	0	8.12818e-05	0	0
DLEC1	9940	broad.mit.edu	37	3	38141783	38141783	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:38141783C>T	uc003cho.1	+	19	2752	c.2731C>T	c.(2731-2733)CCC>TCC	p.P911S	DLEC1_uc003chp.1_Missense_Mutation_p.P911S|DLEC1_uc010hgv.1_Missense_Mutation_p.P911S|DLEC1_uc003chr.1_Missense_Mutation_p.P17S|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	911					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GCAGGTGTCTCCCTTCGACAT	0.587000													12	126					0	0	0.000219431	0	0
SCN10A	6336	broad.mit.edu	37	3	38805058	38805058	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:38805058C>T	uc003ciq.2	-	5	629	c.629G>A	c.(628-630)GGG>GAG	p.G210E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	210	I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCCTGAGATCCCACGGAGATC	0.438000													5	85					0	0	0.000602214	0	0
CCK	885	broad.mit.edu	37	3	42299711	42299711	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:42299711C>T	uc003clc.1	-	3	436	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	CCK_uc003cld.1_Missense_Mutation_p.R76Q	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	76					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GATGGACATTCGTCCAGAAGG	0.473000													6	63					0	0	8.12818e-05	0	0
CCRL2	9034	broad.mit.edu	37	3	46450311	46450311	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:46450311C>T	uc003cpp.3	+	2	1026	c.741C>T	c.(739-741)TTC>TTT	p.F247F	CCRL2_uc010hjg.2_Silent_p.F259F|CCRL2_uc010hjf.2_Silent_p.F247F	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	247	Helical; Name=6; (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		TGGTAGTCTTCCTTCTGATGT	0.403000													23	291					0	0	0.000184323	0	0
ATRIP	84126	broad.mit.edu	37	3	48493265	48493265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:48493265C>T	uc003ctf.1	+	3	544	c.512C>T	c.(511-513)ACC>ATC	p.T171I	ATRIP_uc011bbj.1_Missense_Mutation_p.T44I|ATRIP_uc003ctg.1_Missense_Mutation_p.T171I	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	171	Potential.				DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAAGAGAAAACCCAAGCACTC	0.433000								Other_conserved_DNA_damage_response_genes					4	46					0	0	0.00024832	0	0
SHISA5	51246	broad.mit.edu	37	3	48510878	48510878	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:48510878C>T	uc003ctp.1	-	5	659	c.525G>A	c.(523-525)CAG>CAA	p.Q175Q	SHISA5_uc003ctn.1_Missense_Mutation_p.G44R|SHISA5_uc003ctm.1_Silent_p.Q72Q|SHISA5_uc011bbk.1_Missense_Mutation_p.G84R|SHISA5_uc003cto.1_Silent_p.Q144Q|SHISA5_uc003ctq.1_Silent_p.Q168Q|SHISA5_uc003ctr.1_Silent_p.Q144Q|SHISA5_uc003cts.1_Silent_p.Q144Q|SHISA5_uc003ctt.2_Silent_p.Q72Q|SHISA5_uc003ctu.1_RNA|SHISA5_uc011bbl.1_Silent_p.Q73Q	NM_016479	NP_057563	Q8N114	SHSA5_HUMAN	scotin precursor	175	Cytoplasmic (Potential).|Pro-rich.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|integral to membrane|nuclear membrane	signal transducer activity|WW domain binding				0						TGTGGTAGCCCTGGTAGCTTG	0.637000													8	66					0	0	0.000157383	0	0
LAMB2	3913	broad.mit.edu	37	3	49162318	49162318	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:49162318G>A	uc003cwe.2	-	21	3224	c.2925C>T	c.(2923-2925)GAC>GAT	p.D975D	LAMB2_uc003cwf.1_Silent_p.D975D	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	975	Laminin EGF-like 9.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCCTTGATGGGTCCCCAAAGT	0.612000													5	51					0	0	8.12818e-05	0	0
IP6K1	9807	broad.mit.edu	37	3	49785291	49785291	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:49785291G>A	uc003cxm.1	-	2	498	c.183C>T	c.(181-183)TCC>TCT	p.S61S	IP6K1_uc003cxn.1_Intron|IP6K1_uc011bcv.1_Intron|IP6K1_uc003cxo.2_Silent_p.S61S	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	61					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						CGGGAGGGAGGGACTCGTAAA	0.537000													6	35					0	0	8.12818e-05	0	0
VPRBP	9730	broad.mit.edu	37	3	51475831	51475831	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:51475831C>T	uc003dbe.1	-	8	764	c.596G>A	c.(595-597)CGG>CAG	p.R199Q	VPRBP_uc003dbg.1_Missense_Mutation_p.R199Q	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	199					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		AGAGAGCTTCCGTGGACTGGG	0.507000													20	157					0	0	0.000295444	0	0
ATXN7	6314	broad.mit.edu	37	3	63965609	63965609	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:63965609C>T	uc003dlw.3	+	6	1071	c.518C>T	c.(517-519)TCC>TTC	p.S173F	ATXN7_uc003dlv.2_Missense_Mutation_p.S173F|ATXN7_uc010hnv.2_Missense_Mutation_p.S173F|ATXN7_uc010hnw.2_Missense_Mutation_p.S28F|ATXN7_uc011bfn.1_Missense_Mutation_p.S28F	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	173	Poly-Ser.|Ser-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		CATAGCTCATCCAGCAAGCCG	0.428000													7	73					0	0	0.000274275	0	0
EPHA6	285220	broad.mit.edu	37	3	97167475	97167475	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:97167475C>T	uc010how.1	+	7	1838	c.1795C>T	c.(1795-1797)CTT>TTT	p.L599F	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_5'UTR|EPHA6_uc003drs.3_5'UTR|EPHA6_uc003drr.3_5'UTR|EPHA6_uc003drt.2_5'UTR|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	504	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CATCACAGGTCTTAAGCCAGC	0.448000													6	79					0	0	3.59834e-05	0	0
MYH15	22989	broad.mit.edu	37	3	108110754	108110754	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:108110754C>T	uc003dxa.1	-	38	5400	c.5343G>A	c.(5341-5343)CTG>CTA	p.L1781L		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1781	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTTCTTCTTCAGTTCTTCTG	0.413000													15	125					0	0	9.7654e-05	0	0
MYH15	22989	broad.mit.edu	37	3	108174625	108174626	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:108174625_108174626GG>AA	uc003dxa.1	-	21	2336_2337	c.2279_2280CC>TT	c.(2278-2280)TCC>TTT	p.S760F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	760	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTATCTCCAAGGAGCCAAGTAA	0.411000													16	146					0	0	6.4e-05	0	0
MORC1	27136	broad.mit.edu	37	3	108723683	108723684	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:108723683_108723684CC>AA	uc003dxl.2	-	20	2152_2153	c.2065_2066GG>TT	c.(2065-2067)GGG>TTG	p.G689L	MORC1_uc011bhn.1_Missense_Mutation_p.G668L	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	689					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTTCAGGCACCCTTCAGTTGGT	0.347000													11	407					0	0	6.4e-05	0	0
HCLS1	3059	broad.mit.edu	37	3	121366201	121366201	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:121366201C>T	uc003eeh.3	-	4	378	c.253G>A	c.(253-255)GGT>AGT	p.G85S	HCLS1_uc011bjj.1_Missense_Mutation_p.G85S|HCLS1_uc011bjk.1_RNA|HCLS1_uc011bjl.1_Missense_Mutation_p.G85S	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	85	Cortactin 1.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CCAAACCGACCTCCATAGCCA	0.388000													14	158					0	0	7.07596e-05	0	0
PLXNA1	5361	broad.mit.edu	37	3	126737355	126737356	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:126737355_126737356CC>AT	uc003ejg.2	+	19	3814_3815	c.3810_3811CC>AT	c.(3808-3813)GCCCTC>GCATTC	p.L1271F		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1294	Potential.|Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CCCGCGTGGCCCTCGAATGCAA	0.649000													7	7					0	0	6.4e-05	0	0
WDR49	151790	broad.mit.edu	37	3	167246892	167246892	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:167246892C>T	uc003fev.1	-	10	1604	c.1298G>A	c.(1297-1299)CGA>CAA	p.R433Q	WDR49_uc003feu.1_Missense_Mutation_p.R258Q|WDR49_uc011bpd.1_Missense_Mutation_p.R497Q|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	433	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						GGTAAGGTATCGATTCATCTT	0.343000													7	88					0	0	0.000274275	0	0
IQCG	84223	broad.mit.edu	37	3	197670848	197670848	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr3:197670848G>A	uc003fyo.2	-	3	229	c.83C>T	c.(82-84)CCA>CTA	p.P28L	IQCG_uc003fyp.2_Missense_Mutation_p.P28L|IQCG_uc003fyq.3_Missense_Mutation_p.P28L	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	28											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		GGTACTAGGTGGTTCGCCTGT	0.433000													31	147					0	0	0.000279167	0	0
MFSD7	84179	broad.mit.edu	37	4	680340	680340	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:680340G>A	uc003gay.2	-	2	332	c.275C>T	c.(274-276)TCC>TTC	p.S92F	MFSD7_uc003gaw.2_5'Flank|MFSD7_uc003gax.2_Missense_Mutation_p.S92F|MFSD7_uc003gaz.2_Missense_Mutation_p.S70F|MFSD7_uc003gba.2_Missense_Mutation_p.S92F|MFSD7_uc003gbb.1_Missense_Mutation_p.S28F	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	92					transmembrane transport	integral to membrane					0						GAGCCCGACGGAGTCCAGGAT	0.647000													19	43					0	0	0.000132079	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895338	42895338	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:42895338C>T	uc003gwt.2	+	1	55	c.55C>T	c.(55-57)CGG>TGG	p.R19W		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	19					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AGTCCGGTTTCGGATCGCGTC	0.512000													9	78					0	0	0.000442599	0	0
KCTD8	386617	broad.mit.edu	37	4	44177029	44177029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:44177029C>T	uc003gwu.2	-	2	1484	c.1200G>A	c.(1198-1200)TGG>TGA	p.W400*		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	400						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						GTGGGGGTATCCATTGTACAG	0.498000										HNSCC(17;0.042)			39	180					0	0	0.000191422	0	0
CWH43	80157	broad.mit.edu	37	4	49034655	49034655	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:49034655C>T	uc003gyv.2	+	12	1763	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	CWH43_uc011bzl.1_Silent_p.I500I	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	527					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						AGGGCGAGATCGCACCAGCCA	0.483000													23	121					0	0	0.000229342	0	0
CWH43	80157	broad.mit.edu	37	4	49034687	49034687	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:49034687C>T	uc003gyv.2	+	12	1795	c.1613C>T	c.(1612-1614)TCG>TTG	p.S538L	CWH43_uc011bzl.1_Missense_Mutation_p.S511L	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	538					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GTTAACATTTCGGGCAAGCTG	0.458000													12	87					0	0	0.000219431	0	0
LRRC66	339977	broad.mit.edu	37	4	52883637	52883637	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:52883637A>G	uc003gzi.2	-	1	156	c.143T>C	c.(142-144)TTT>TCT	p.F48S		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	48						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CTTTCCGGTAAAAGAACAATT	0.333000													10	52					0	0	0.000442599	0	0
SULT1B1	27284	broad.mit.edu	37	4	70620402	70620402	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:70620402C>T	uc003hen.2	-	3	561	c.263G>A	c.(262-264)GGA>GAA	p.G88E		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	88					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TGTTCTTAATCCAGGGAGAGT	0.303000													13	161					0	0	0.000422831	0	0
PPA2	27068	broad.mit.edu	37	4	106367568	106367568	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:106367568T>C	uc003hxl.2	-	5	433	c.413A>G	c.(412-414)TAT>TGT	p.Y138C	PPA2_uc003hxm.2_Missense_Mutation_p.Y120C|PPA2_uc003hxn.2_Missense_Mutation_p.Y138C|PPA2_uc003hxo.2_Intron|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_Missense_Mutation_p.Y45C|PPA2_uc003hxr.2_Missense_Mutation_p.Y45C|PPA2_uc011cfa.1_Missense_Mutation_p.Y45C	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	138					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		ATTCCATATATAACCCTTGTA	0.373000													14	115					0	0	9.7654e-05	0	0
NDST4	64579	broad.mit.edu	37	4	115997731	115997731	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:115997731A>T	uc003ibu.2	-	2	1141	c.462T>A	c.(460-462)TGT>TGA	p.C154*	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	154	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TGTATTCCACACAGTATTTTT	0.328000													4	61					0	0	0.00024832	0	0
FAT4	79633	broad.mit.edu	37	4	126371967	126371967	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:126371967C>T	uc003ifj.3	+	9	9796	c.9796C>T	c.(9796-9798)CTT>TTT	p.L3266F	FAT4_uc011cgp.1_Missense_Mutation_p.L1564F|FAT4_uc003ifi.1_Missense_Mutation_p.L744F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3266	Cadherin 31.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAGCTACCATCTTACTGTGAA	0.423000													8	47					0	0	0.000274275	0	0
SMARCA5	8467	broad.mit.edu	37	4	144449755	144449755	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:144449755A>G	uc003ijg.2	+	8	1439	c.977A>G	c.(976-978)GAA>GGA	p.E326G		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	326	Helicase ATP-binding.				CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					ATAGTGAGGGAATTCAAGACT	0.289000													5	43					0	0	0.000602214	0	0
ACSL1	2180	broad.mit.edu	37	4	185678861	185678861	+	Splice_Site	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr4:185678861C>A	uc003iww.2	-	20	2179	c.1885_splice	c.e20-1	p.D629_splice	ACSL1_uc011ckm.1_Splice_Site_p.D458_splice|ACSL1_uc003iwt.1_Splice_Site_p.D629_splice|ACSL1_uc003iwu.1_Splice_Site_p.D629_splice|ACSL1_uc011ckn.1_Splice_Site_p.D595_splice|ACSL1_uc003iws.1_Splice_Site_p.D189_splice	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1						digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TTTTGACATCCTAAAAGGGTA	0.398000													8	150					0.000157383	0.00292417	0.000157383	1	0
IRX2	153572	broad.mit.edu	37	5	2749026	2749026	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:2749026C>T	uc003jda.2	-	3	1038	c.796G>A	c.(796-798)GAC>AAC	p.D266N	IRX2_uc003jdb.2_Missense_Mutation_p.D266N	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	266						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		TCGTCCTCGTCGTCCTCCAGG	0.687000													8	22					0	0	0.000274275	0	0
PRDM9	56979	broad.mit.edu	37	5	23509604	23509604	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:23509604C>T	uc003jgo.2	+	3	277	c.95C>T	c.(94-96)TCC>TTC	p.S32F		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	32	KRAB-related.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AAAGACATTTCCATATACTTC	0.413000										HNSCC(3;0.000094)			28	170					0	0	0.00058488	0	0
NIPBL	25836	broad.mit.edu	37	5	36986309	36986309	+	Silent	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:36986309T>C	uc003jkl.3	+	10	3526	c.3027T>C	c.(3025-3027)TCT>TCC	p.S1009S	NIPBL_uc003jkk.3_Silent_p.S1009S|NIPBL_uc003jkm.1_Silent_p.S888S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1009	PxVxL motif.				brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AAAAACTGTCTTTGGATGATG	0.333000													43	250					0	0	0.000125731	0	0
PTCD2	79810	broad.mit.edu	37	5	71648498	71648498	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:71648498G>A	uc003kcb.2	+	9	869	c.859G>A	c.(859-861)GAA>AAA	p.E287K	PTCD2_uc011csf.1_Missense_Mutation_p.E97K|PTCD2_uc003kcc.2_Missense_Mutation_p.E135K|PTCD2_uc011csg.1_Missense_Mutation_p.E115K|PTCD2_uc011csh.1_Missense_Mutation_p.E178K|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	287											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		AAATATGTTGGAAAACCTGAT	0.363000													13	38					0	0	0.00010058	0	0
ACOT12	134526	broad.mit.edu	37	5	80638515	80638515	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:80638515C>T	uc003khl.3	-	11	1159	c.1104G>A	c.(1102-1104)TGG>TGA	p.W368*	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	368	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		TGGTAACCTCCCAACCCCTTT	0.448000													14	122					0	0	0.000422831	0	0
LNPEP	4012	broad.mit.edu	37	5	96349474	96349474	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:96349474C>A	uc003kmv.1	+	12	2672	c.2158C>A	c.(2158-2160)CCT>ACT	p.P720T	LNPEP_uc003kmw.1_Missense_Mutation_p.P706T	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	720	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		GAAAATAAATCCTTATGTTCT	0.338000													15	164					4.35082e-09	8.29763e-08	0.000175454	1	0
SMAD5	4090	broad.mit.edu	37	5	135489586	135489586	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:135489586A>G	uc003lbj.1	+	4	581	c.137A>G	c.(136-138)AAG>AGG	p.K46R	SMAD5_uc003lbk.1_Missense_Mutation_p.K46R|SMAD5_uc003lbl.1_Missense_Mutation_p.K46R	NM_001001419	NP_001001419	Q99717	SMAD5_HUMAN	SMAD family member 5	46	Poly-Lys.|MH1.				BMP signaling pathway|embryonic pattern specification|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|ubiquitin protein ligase binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AAAAAGAAAAAGGGTGCCATG	0.473000													4	79					0	0	0.00024832	0	0
CDC25C	995	broad.mit.edu	37	5	137621477	137621477	+	Silent	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:137621477A>G	uc003lcp.1	-	14	1597	c.1326T>C	c.(1324-1326)ACT>ACC	p.T442T	CDC25C_uc003lcq.1_Silent_p.T369T|CDC25C_uc003lcr.1_Silent_p.T442T|CDC25C_uc011cyp.1_Silent_p.T459T|CDC25C_uc003lcs.1_Silent_p.T520T	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	442					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCAGCAACTCAGTCTTGTGGT	0.527000													6	99					0	0	8.12818e-05	0	0
PSD2	84249	broad.mit.edu	37	5	139216804	139216804	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:139216804C>T	uc003leu.1	+	11	1851	c.1646C>T	c.(1645-1647)ACC>ATC	p.T549I		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	549	PH.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCAAAGGGACCATCCTGTAC	0.627000													6	77					0	0	8.12818e-05	0	0
SLC4A9	83697	broad.mit.edu	37	5	139743728	139743728	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:139743728G>A	uc003lfm.2	+	10	1451	c.1416G>A	c.(1414-1416)ACG>ACA	p.T472T	SLC4A9_uc003lfj.2_Silent_p.T448T|SLC4A9_uc011czg.1_Silent_p.T448T|SLC4A9_uc003lfl.2_Silent_p.T448T|SLC4A9_uc003lfk.2_Silent_p.T437T	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	472	Helical; (Potential).|Membrane (anion exchange).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGCAGCACGGGGCCAGTGC	0.617000													5	26					0	0	0.000602214	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908431	139908431	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:139908431C>T	uc003lfs.1	+	29	6024	c.5900C>T	c.(5899-5901)CCT>CTT	p.P1967L	ANKHD1_uc003lfr.2_Missense_Mutation_p.P1967L|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.P706L|ANKHD1_uc003lfw.2_Missense_Mutation_p.P605L|ANKHD1_uc010jfl.2_Missense_Mutation_p.P402L|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.P104L	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1967						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGTGTGCCTAAGACAAGT	0.502000													26	131					0	0	0.000586117	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187229	140187229	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140187229C>T	uc003lhi.2	+	1	558	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.P153S|PCDHA4_uc011daa.1_Missense_Mutation_p.P153S	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCACTAGAGGG	0.537000													15	84					0	0	0.000566183	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208960	140208960	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140208960G>A	uc003lho.2	+	1	1311	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.R428R|PCDHA6_uc011dab.1_Silent_p.R428R	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACCGCGCGGGACGGGGGCT	0.622000													9	146					0	0	0.000442599	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235762	140235762	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140235762C>T	uc003lhx.2	+	1	129	c.129C>T	c.(127-129)TTC>TTT	p.F43F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Silent_p.F43F|PCDHA10_uc011dad.1_Silent_p.F43F	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	43	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGCACCTTCGTGGGCCGCA	0.657000													8	78					0	0	0.000274275	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308559	140308559	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140308559A>T	uc003lih.2	+	1	2258	c.2082A>T	c.(2080-2082)TTA>TTT	p.L694F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.L694F	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	694	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTCCTTTTTATTTCTGGGGT	0.478000													9	94					0	0	6.40141e-05	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347643	140347643	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140347643G>C	uc003lii.2	+	1	1532	c.1292G>C	c.(1291-1293)CGG>CCG	p.R431P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.R431P	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	431	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCGAGAGCGGGTGGCTGTC	0.562000													4	121					0	0	0.00024832	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554096	140554096	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140554096C>T	uc003lit.2	+	1	1854	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	560	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGCTGTACC	0.726000													7	55					0	0	8.12818e-05	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603804	140603804	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140603804C>T	uc003ljb.2	+	1	727	c.727C>T	c.(727-729)CCT>TCT	p.P243S	PCDHB14_uc011dal.1_Missense_Mutation_p.P90S	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	243	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTGAGTTTCCTCAGAGTCT	0.507000													12	69					0	0	0.000151284	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719052	140719052	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140719052C>T	uc003ljk.1	+	1	699	c.514C>T	c.(514-516)CTC>TTC	p.L172F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.L172F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	172	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGTACGCACTCAACCCAAA	0.537000													9	77					0	0	0.000442599	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725065	140725065	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:140725065T>C	uc003ljm.1	+	1	1465	c.1465T>C	c.(1465-1467)TAT>CAT	p.Y489H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.Y249H|PCDHGA3_uc011dap.1_Missense_Mutation_p.Y489H	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	489	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGCATCACTTATGCATTGAC	0.552000													5	96					0	0	0.000602214	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142500670	142500671	+	Nonsense_Mutation	DNP	TC	GT	GT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:142500670_142500671TC>GT	uc011dbj.1	+	18	1691_1692	c.1656_1657TC>GT	c.(1654-1659)TTTCAG>TTGTAG	p.552_553FQ>L*	ARHGAP26_uc003lmt.2_Nonsense_Mutation_p.552_553FQ>L*|ARHGAP26_uc003lmw.2_Nonsense_Mutation_p.552_553FQ>L*	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	552_553	Rho-GAP.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACATCAAATTTCAGAACATTGT	0.441000													18	91					0	0	6.4e-05	0	0
CSNK1A1	1452	broad.mit.edu	37	5	148930447	148930448	+	Missense_Mutation	DNP	GG	AA	AA	rs112881076	by1000genomes	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:148930447_148930448GG>AA	uc003lqx.1	-	1	560_561	c.80_81CC>TT	c.(79-81)TCC>TTT	p.S27F	CSNK1A1_uc011dcc.1_5'Flank|CSNK1A1_uc003lqv.1_5'Flank|CSNK1A1_uc003lqw.1_Missense_Mutation_p.S27F|CSNK1A1_uc003lqy.1_Missense_Mutation_p.S27F|CSNK1A1_uc010jha.1_Missense_Mutation_p.S27F	NM_001892	NP_001883	P48729	KC1A_HUMAN	casein kinase 1, alpha 1 isoform 2	27	ATP (By similarity).|Protein kinase.				cell division|mitosis|Wnt receptor signaling pathway	centrosome|condensed chromosome kinetochore|cytosol|nuclear speck	ATP binding|protein binding|protein binding|protein serine/threonine kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		TGTCCCCGAAGGAGCCAGACCC	0.535000													13	55					0	0	6.4e-05	0	0
NSD1	64324	broad.mit.edu	37	5	176721292	176721292	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:176721292C>T	uc003mfr.3	+	23	7061	c.6923C>T	c.(6922-6924)TCC>TTC	p.S2308F	NSD1_uc003mft.3_Missense_Mutation_p.S2039F|NSD1_uc011dfx.1_Missense_Mutation_p.S1956F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2308	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AAATCCCAATCCTTGGTTTCC	0.577000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			6	57					0	0	3.59834e-05	0	0
ZNF354C	30832	broad.mit.edu	37	5	178506290	178506290	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr5:178506290C>T	uc003mju.2	+	5	972	c.857C>T	c.(856-858)ACC>ATC	p.T286I		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	286	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		AACAGTTCAACCCTTATCAAA	0.423000													8	87					0	0	0.000157383	0	0
TUBB2A	7280	broad.mit.edu	37	6	3154832	3154832	+	Silent	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:3154832G>T	uc003mvc.2	-	4	689	c.603C>A	c.(601-603)TCC>TCA	p.S201S	TUBB2A_uc003mvb.2_Silent_p.S194S|TUBB2A_uc003mvd.2_Silent_p.S164S	NM_001069	NP_001060	Q13885	TBB2A_HUMAN	tubulin, beta 2	201					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			skin(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.0895)				CGTTATCAATGGAGTAGGTTT	0.592000													7	108					0.000274275	0.0050184	0.000274275	1	0
F13A1	2162	broad.mit.edu	37	6	6318852	6318852	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:6318852G>A	uc003mwv.2	-	2	169	c.46C>T	c.(46-48)CCA>TCA	p.P16S	F13A1_uc011dib.1_Missense_Mutation_p.P16S	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	16					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTATTGGGTGGAACTGCTCTT	0.498000													49	145					0	0	0.000147903	0	0
TRIM15	89870	broad.mit.edu	37	6	30131599	30131599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:30131599G>A	uc010jrx.2	+	1	617	c.138G>A	c.(136-138)ATG>ATA	p.M46I	TRIM10_uc003npn.2_5'Flank|TRIM10_uc003npo.3_5'Flank	NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	46	RING-type.				mesodermal cell fate determination	intracellular	zinc ion binding				0						TCTCCCAGATGGGGGCCCAAT	0.687000													7	32					0	0	0.000157383	0	0
SLC44A4	80736	broad.mit.edu	37	6	31837018	31837019	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:31837018_31837019CC>AA	uc010jti.2	-	13	1212_1213	c.1146_1147GG>TT	c.(1144-1149)TCGGGG>TCTTGG	p.G383W		NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	383	Extracellular (Potential).			LATSGQPQ -> PLPTQPATLG (in Ref. 4; AAD21813 and 5; BAB63296).		integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	TGGGGTTGCCCCGATGTAGCCA	0.554000													9	292					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31937189	31937189	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:31937189C>T	uc003nyn.1	+	27	3921	c.3532C>T	c.(3532-3534)CGG>TGG	p.R1178W	SKIV2L_uc011dou.1_Missense_Mutation_p.R1020W|SKIV2L_uc011dov.1_Missense_Mutation_p.R985W|STK19_uc003nyt.2_5'Flank|STK19_uc011dow.1_5'Flank|STK19_uc011dox.1_5'Flank|STK19_uc003nyv.2_5'Flank|STK19_uc003nyw.2_5'Flank|STK19_uc010jtn.1_5'Flank	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	1178						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TGAGTGGGCCCGGGGCATGGT	0.577000													63	267					0	0	0.000147903	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163237	32163237	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:32163237G>T	uc003obb.2	-	30	6128	c.5989C>A	c.(5989-5991)CAA>AAA	p.Q1997K	GPSM3_uc003oax.3_5'Flank|GPSM3_uc003oay.3_5'Flank|GPSM3_uc003oaz.2_5'UTR|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.Q657K|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1997	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TCTCCTCCTTGGTTTATGGGC	0.502000													9	265					6.40141e-05	0.00119554	6.40141e-05	1	0
FGD2	221472	broad.mit.edu	37	6	36981805	36981805	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:36981805G>C	uc010jwp.1	+	6	923	c.752G>C	c.(751-753)CGT>CCT	p.R251P	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Missense_Mutation_p.R57P	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	251	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGAATTCCACGTTACGAGCTG	0.647000													13	67					0	0	0.000151284	0	0
COL19A1	1310	broad.mit.edu	37	6	70851968	70851968	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:70851968G>T	uc003pfc.1	+	22	1689	c.1572G>T	c.(1570-1572)AAG>AAT	p.K524N	COL19A1_uc010kam.1_Missense_Mutation_p.K420N	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	524	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CAGGACTAAAGGTATATAAGA	0.398000													7	28					1.76689e-08	3.36083e-07	0.000442599	1	0
PRDM1	639	broad.mit.edu	37	6	106555006	106555006	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:106555006G>A	uc003prd.2	+	7	2357	c.2123G>A	c.(2122-2124)GGG>GAG	p.G708E	PRDM1_uc003pre.2_Missense_Mutation_p.G574E	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	708					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CACCTGAAAGGGAACTGCGCT	0.567000			D|N|Mis|F|S		DLBCL								27	240					0	0	0.000279167	0	0
AHI1	54806	broad.mit.edu	37	6	135726089	135726089	+	Silent	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:135726089T>C	uc003qgi.2	-	22	3372	c.2988A>G	c.(2986-2988)AAA>AAG	p.K996K	AHI1_uc003qgf.2_RNA|AHI1_uc003qgg.2_Silent_p.K446K|AHI1_uc003qgh.2_Silent_p.K996K|AHI1_uc003qgj.2_Silent_p.K996K|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Silent_p.K996K	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	996						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		AACTACTTACTTTTGCAGCAC	0.323000													7	36					0	0	0.000274275	0	0
GRM1	2911	broad.mit.edu	37	6	146720330	146720330	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:146720330A>G	uc010khw.1	+	8	2625	c.2155A>G	c.(2155-2157)ACC>GCC	p.T719A	GRM1_uc010khv.1_Missense_Mutation_p.T719A|GRM1_uc003qll.2_Missense_Mutation_p.T719A|GRM1_uc011edz.1_Missense_Mutation_p.T719A|GRM1_uc011eea.1_Missense_Mutation_p.T719A	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	719	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TGTGCAACTAACCCTGGTGGT	0.517000													10	51					0	0	0.000442599	0	0
SYNE1	23345	broad.mit.edu	37	6	152501270	152501270	+	Splice_Site	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:152501270C>T	uc010kiw.2	-	129	24062	c.23460_splice	c.e129+1	p.K7820_splice	SYNE1_uc010kiv.2_Splice_Site_p.K2344_splice|SYNE1_uc003qos.3_Splice_Site_p.K2344_splice|SYNE1_uc003qot.3_Splice_Site_p.K7749_splice|SYNE1_uc003qou.3_Splice_Site_p.K7820_splice|SYNE1_uc003qop.3_5'Flank|SYNE1_uc011eez.1_Splice_Site_p.K22_splice|SYNE1_uc003qoq.3_Splice_Site_p.K22_splice|SYNE1_uc003qor.3_Splice_Site_p.K720_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCATTCCATACCTTCTTGAGC	0.383000										HNSCC(10;0.0054)			11	54					0	0	3.86212e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152686086	152686086	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:152686086G>A	uc010kiw.2	-	63	10643	c.10041C>T	c.(10039-10041)GTC>GTT	p.V3347V	SYNE1_uc003qot.3_Silent_p.V3354V|SYNE1_uc003qou.3_Silent_p.V3347V|SYNE1_uc010kja.1_Silent_p.V52V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3347	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TATTCTGAAGGACAGATTCTC	0.433000										HNSCC(10;0.0054)			15	63					0	0	0.000308642	0	0
VIP	7432	broad.mit.edu	37	6	153076434	153076434	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:153076434C>T	uc003qpe.2	+	4	433	c.261C>T	c.(259-261)ACC>ACT	p.T87T	VIP_uc003qpf.2_Silent_p.T87T|VIP_uc010kjd.2_Silent_p.T87T	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	87					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		GAGTTTTCACCAGTGACTTCA	0.318000													9	66					0	0	3.86212e-05	0	0
TULP4	56995	broad.mit.edu	37	6	158923497	158923497	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:158923497C>T	uc003qrf.2	+	13	4159	c.2802C>T	c.(2800-2802)GTC>GTT	p.V934V	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	934					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		AGAAGAAGGTCCCTCAGCCCT	0.677000													9	51					0	0	0.000442599	0	0
CHST12	55501	broad.mit.edu	37	7	2472430	2472430	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:2472430C>T	uc003smc.2	+	2	291	c.156C>T	c.(154-156)CCC>CCT	p.P52P	CHST12_uc003smd.2_Silent_p.P52P	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	52	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		TGCCCACGCCCGGGCCGGACA	0.642000													18	65					0	0	0.000175454	0	0
CARD11	84433	broad.mit.edu	37	7	2963915	2963915	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:2963915T>C	uc003smv.2	-	15	2296	c.1892A>G	c.(1891-1893)TAC>TGC	p.Y631C		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	631					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCCAGGTCGTAGGCATCCAG	0.592000			Mis		DLBCL								4	39					0	0	0.00024832	0	0
THSD7A	221981	broad.mit.edu	37	7	11632979	11632979	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:11632979G>A	uc003ssf.3	-	3	1425	c.1173C>T	c.(1171-1173)ACC>ACT	p.T391T		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	391	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACTGCCTGATGGTTCGTGTCC	0.517000										HNSCC(18;0.044)			6	54					0	0	0.000157383	0	0
DGKB	1607	broad.mit.edu	37	7	14724893	14724893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:14724893C>T	uc003ssz.2	-	9	993	c.806G>A	c.(805-807)GGG>GAG	p.G269E	DGKB_uc011jxt.1_Missense_Mutation_p.G262E|DGKB_uc003sta.2_Missense_Mutation_p.G269E|DGKB_uc011jxu.1_Missense_Mutation_p.G269E|DGKB_uc011jxv.1_Missense_Mutation_p.G269E	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	269	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GCCCTGCTTCCCCACGCCAAT	0.478000													10	61					0	0	0.00010058	0	0
ABCB5	340273	broad.mit.edu	37	7	20768024	20768024	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:20768024G>A	uc003suw.3	+	14	2024	c.1478G>A	c.(1477-1479)CGA>CAA	p.R493Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R938Q|ABCB5_uc003sux.1_Missense_Mutation_p.R116Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	493	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GCAGGGTTTCGATTTGGAGCC	0.358000													26	104					0	0	0.000586117	0	0
DNAH11	8701	broad.mit.edu	37	7	21745129	21745129	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:21745129G>A	uc003svc.2	+	40	6572	c.6541G>A	c.(6541-6543)GGA>AGA	p.G2181R		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2181	AAA 2 (By similarity).|ATP (Potential).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTTTGTAGTTGGAAATGCAGG	0.448000									Kartagener_syndrome				9	58					0	0	3.86212e-05	0	0
ELN	2006	broad.mit.edu	37	7	73474766	73474766	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:73474766G>A	uc003tzw.2	+	25	1791	c.1700G>A	c.(1699-1701)GGA>GAA	p.G567E	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.G561E|ELN_uc003tzz.2_Missense_Mutation_p.G480E|ELN_uc003tzo.2_Missense_Mutation_p.G513E|ELN_uc003tzp.2_Missense_Mutation_p.G472E|ELN_uc003tzq.2_Missense_Mutation_p.G425E|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.G542E|ELN_uc003tzt.2_Missense_Mutation_p.G566E|ELN_uc003tzu.2_Missense_Mutation_p.G547E|ELN_uc003tzv.2_Missense_Mutation_p.G532E|ELN_uc003tzx.2_Missense_Mutation_p.G551E|ELN_uc011kff.1_Missense_Mutation_p.G561E|ELN_uc003tzy.2_Missense_Mutation_p.G537E	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	590	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GGCGTCCCTGGACTTGGAGTT	0.632000			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						17	69					0	0	9.7654e-05	0	0
PCLO	27445	broad.mit.edu	37	7	82582495	82582495	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:82582495G>T	uc003uhx.2	-	5	8063	c.7774C>A	c.(7774-7776)CCA>ACA	p.P2592T	PCLO_uc003uhv.2_Missense_Mutation_p.P2592T|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2523					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAATCTGTTGGAGTCCCTGGT	0.453000													12	195					1.36491e-13	2.61693e-12	0.000151284	1	0
PCLO	27445	broad.mit.edu	37	7	82582497	82582497	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:82582497G>A	uc003uhx.2	-	5	8061	c.7772C>T	c.(7771-7773)ACT>ATT	p.T2591I	PCLO_uc003uhv.2_Missense_Mutation_p.T2591I|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2522					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCTGTTGGAGTCCCTGGTTC	0.448000													13	191					0	0	0.000219431	0	0
ADAM22	53616	broad.mit.edu	37	7	87759752	87759752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:87759752C>T	uc003ujn.2	+	10	882	c.803C>T	c.(802-804)TCT>TTT	p.S268F	ADAM22_uc003ujj.1_Missense_Mutation_p.S268F|ADAM22_uc003ujk.1_Missense_Mutation_p.S268F|ADAM22_uc003ujl.1_Missense_Mutation_p.S268F|ADAM22_uc003ujm.2_Missense_Mutation_p.S268F|ADAM22_uc003ujo.2_Missense_Mutation_p.S268F|ADAM22_uc003ujp.1_Missense_Mutation_p.S320F	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	268	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TATGCGAAATCTGTGGTGAAC	0.348000													5	99					0	0	3.59834e-05	0	0
C7orf64	84060	broad.mit.edu	37	7	92163790	92163790	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:92163790G>A	uc003ulz.2	+	4	564	c.523G>A	c.(523-525)GAG>AAG	p.E175K	C7orf64_uc011khu.1_3'UTR|C7orf64_uc003uma.2_Missense_Mutation_p.E175K	NM_032120	NP_115496	Q5RL73	CG064_HUMAN	hypothetical protein LOC84060	175							nucleotide binding			ovary(2)	2						CTTCCACTCAGAGATGTCTGG	0.363000													13	54					0	0	0.000308642	0	0
PTCD1	26024	broad.mit.edu	37	7	99057750	99057750	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:99057750C>A	uc011kiw.1	-	2	124	c.80G>T	c.(79-81)CGG>CTG	p.R27L	ATP5J2_uc003uql.2_Missense_Mutation_p.R27L|ATP5J2_uc003uqm.2_Missense_Mutation_p.R33L|ATP5J2_uc003uqn.2_Missense_Mutation_p.R27L|ATP5J2_uc003uqo.2_Missense_Mutation_p.R33L	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	Error:Variant_position_missing_in_O75127_after_alignment										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			ACTGAAGTCCCGCATCAAGAT	0.468000													7	246					0.000274275	0.0050184	0.000274275	1	0
Unknown	0	broad.mit.edu	37	7	100552009	100552009	+	RNA	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:100552009C>T	uc003uxk.1	+	1		c.1260C>T			uc003uxl.1_Missense_Mutation_p.P154S					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		CAGCATAACTCCAGTGTTCTC	0.428000													31	699					0	0	0.00058488	0	0
LRWD1	222229	broad.mit.edu	37	7	102109094	102109094	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:102109094C>T	uc003uzn.2	+	8	1151	c.1013C>T	c.(1012-1014)CCC>CTC	p.P338L	LRWD1_uc003uzo.2_Missense_Mutation_p.P186L	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	338					chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						TACAAGGCACCCGGCGAGGTG	0.662000													3	5					0	0	0.00024832	0	0
AKR1D1	6718	broad.mit.edu	37	7	137792290	137792290	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:137792290A>C	uc003vtz.2	+	7	888	c.819A>C	c.(817-819)AAA>AAC	p.K273N	AKR1D1_uc011kqe.1_Missense_Mutation_p.K273N|AKR1D1_uc011kqf.1_Missense_Mutation_p.K232N|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	273	NADP.				androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TCATTCCTAAAAGCTTTAATC	0.363000													24	76					0	0	9.22233e-05	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138453985	138453985	+	Silent	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:138453985A>G	uc003vuf.2	-	3	367	c.129T>C	c.(127-129)AAT>AAC	p.N43N	ATP6V0A4_uc003vug.2_Silent_p.N43N|ATP6V0A4_uc003vuh.2_Silent_p.N43N	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	43	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AGCTGTTCACATTCATATTTA	0.294000													5	106					0	0	3.59834e-05	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657492	139657492	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:139657492G>A	uc011kqv.1	+	9	1053	c.889G>A	c.(889-891)GAA>AAA	p.E297K	TBXAS1_uc003vvh.2_Missense_Mutation_p.E251K|TBXAS1_uc010lne.2_Missense_Mutation_p.E183K|TBXAS1_uc011kqu.1_Missense_Mutation_p.E202K|TBXAS1_uc003vvi.2_Missense_Mutation_p.E251K|TBXAS1_uc003vvj.2_Missense_Mutation_p.E251K|TBXAS1_uc011kqw.1_Missense_Mutation_p.E231K	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	250	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					GAACCGAGACGAACTGAATGG	0.438000													17	66					0	0	9.7654e-05	0	0
DENND2A	27147	broad.mit.edu	37	7	140301361	140301361	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:140301361C>T	uc010lnj.2	-	1	982	c.837G>A	c.(835-837)GGG>GGA	p.G279G	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Silent_p.G279G|DENND2A_uc003vvw.2_Silent_p.G279G|DENND2A_uc003vvx.2_Silent_p.G279G	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	279										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					CATCTTTGTCCCCTTCTCCGG	0.408000													42	135					0	0	0.000147903	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				12	57					0	0	0.000308642	0	0
OR2A5	393046	broad.mit.edu	37	7	143747706	143747706	+	Missense_Mutation	SNP	C	T	T	rs149614119	by1000genomes	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:143747706C>T	uc011ktw.1	+	1	212	c.212C>T	c.(211-213)TCG>TTG	p.S71L		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ATTGATATTTCGTATGCTTCC	0.483000													22	65					0	0	0.000229342	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr7:150174830G>A	uc003whj.2	+	5	2290	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	654	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCCAAGCCGAAAAACTCCT	0.463000													16	54					0	0	0.000308642	0	0
RBPMS	11030	broad.mit.edu	37	8	30402061	30402061	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:30402061C>G	uc003xic.1	+	6	1113	c.448C>G	c.(448-450)CCG>GCG	p.P150A	RBPMS_uc003xid.1_Missense_Mutation_p.P150A|RBPMS_uc003xie.1_Missense_Mutation_p.P150A|RBPMS_uc003xif.1_RNA|RBPMS_uc011lba.1_Missense_Mutation_p.P150A|RBPMS_uc003xib.2_Missense_Mutation_p.P150A|RBPMS_uc010lvh.1_Missense_Mutation_p.P46A	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing	150					positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		AGTGTGGGCCCCGTACCCTCT	0.537000													4	117					0	0	0.00024832	0	0
LETM2	137994	broad.mit.edu	37	8	38264880	38264880	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:38264880G>A	uc003xlm.1	+	10	1342	c.1171G>A	c.(1171-1173)GAT>AAT	p.D391N	LETM2_uc003xll.1_Missense_Mutation_p.D343N|LETM2_uc003xln.1_Missense_Mutation_p.D235N|LETM2_uc003xlo.1_Missense_Mutation_p.D235N	NM_144652	NP_653253	Q2VYF4	LETM2_HUMAN	leucine zipper-EF-hand containing transmembrane	438	Mitochondrial matrix (Potential).					integral to membrane|mitochondrial inner membrane					0	all_cancers(2;6.77e-47)|all_epithelial(2;1.01e-50)|all_lung(3;1.25e-23)|Lung NSC(2;2.76e-23)|Colorectal(12;0.000442)|Esophageal squamous(3;0.00202)	all_lung(54;0.0657)|Hepatocellular(245;0.152)|Lung NSC(58;0.175)	Epithelial(3;1.17e-42)|all cancers(3;5.44e-38)|BRCA - Breast invasive adenocarcinoma(5;5.44e-27)|LUSC - Lung squamous cell carcinoma(2;7.12e-25)|Lung(2;4.49e-22)|COAD - Colon adenocarcinoma(9;0.114)			GATGTTTAAGGATGAAGACTT	0.398000													5	60					0	0	0.000602214	0	0
IDO1	3620	broad.mit.edu	37	8	39775637	39775637	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:39775637G>A	uc003xnm.2	+	3	328	c.214G>A	c.(214-216)GAC>AAC	p.D72N	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	72					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TCATCTCACAGACCACAAGTC	0.423000													22	103					0	0	0.00047179	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611523	42611523	+	Silent	SNP	C	T	T	rs140821226	byFrequency	TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:42611523C>T	uc003xpj.2	-	5	865	c.819G>A	c.(817-819)ACG>ACA	p.T273T	CHRNA6_uc011lcw.1_Silent_p.T258T	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	273	Helical; (Potential).					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AAATACAAAGCGTCACTTTTT	0.443000													7	44					0	0	0.000274275	0	0
POTEA	340441	broad.mit.edu	37	8	43211927	43211928	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:43211927_43211928GG>AA	uc003xpz.1	+	12	1429_1430	c.1386_1387GG>AA	c.(1384-1389)CAGGAT>CAAAAT	p.D463N	POTEA_uc003xqa.1_Missense_Mutation_p.D417N	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	463										ovary(1)	1						CAAAAATCCAGGATGCAGTTAT	0.361000													10	68					0	0	6.4e-05	0	0
PXDNL	137902	broad.mit.edu	37	8	52320686	52320686	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:52320686C>T	uc003xqu.3	-	17	3599	c.3498G>A	c.(3496-3498)AAG>AAA	p.K1166K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1166					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCTCAAAGTTCTTAACTGAAG	0.398000													11	79					0	0	3.86212e-05	0	0
PXDNL	137902	broad.mit.edu	37	8	52366211	52366211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:52366211C>T	uc003xqu.3	-	10	1218	c.1117G>A	c.(1117-1119)GGA>AGA	p.G373R		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	373	Ig-like C2-type 2.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGCCTGGATCCATCCAGCTCC	0.507000													11	36					0	0	6.40141e-05	0	0
RP1	6101	broad.mit.edu	37	8	55537765	55537765	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:55537765A>C	uc003xsd.1	+	4	1471	c.1323A>C	c.(1321-1323)CAA>CAC	p.Q441H	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	441					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTCAAGACCAAGCAAAGCATC	0.433000													19	85					0	0	0.000175454	0	0
XKR9	389668	broad.mit.edu	37	8	71619239	71619239	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:71619239A>G	uc003xyq.2	+	4	878	c.344A>G	c.(343-345)GAA>GGA	p.E115G	XKR9_uc010lze.2_Missense_Mutation_p.E115G|XKR9_uc010lzd.2_5'UTR	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	115						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			AACTTCGTGGAAGAACAAATT	0.353000													9	48					0	0	0.000442599	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813585	106813585	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:106813585G>A	uc003ymd.2	+	8	1298	c.1275G>A	c.(1273-1275)AAG>AAA	p.K425K	ZFPM2_uc011lhs.1_Silent_p.K156K|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	425					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGAGCCAAAAGGCCATGCAGA	0.493000													5	42					0	0	0.000602214	0	0
ADCY8	114	broad.mit.edu	37	8	131861885	131861885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:131861885G>A	uc003ytd.3	-	10	2631	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	792	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AATCAAAATGGATGCAAAGAT	0.443000										HNSCC(32;0.087)			7	44					0	0	0.000274275	0	0
KCNQ3	3786	broad.mit.edu	37	8	133184904	133184904	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:133184904C>T	uc003ytj.2	-	7	1306	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K	KCNQ3_uc010mdt.2_Missense_Mutation_p.E361K	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	361					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CGGTGTTGCTCCTGCACCTTG	0.587000													5	96					0	0	0.000602214	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620568	144620568	+	Silent	SNP	A	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:144620568A>G	uc003yyd.2	-	2	998	c.969T>C	c.(967-969)GTT>GTC	p.V323V		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	323					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCCTCCGAGCAACCCGGGGAC	0.597000													8	134					0	0	0.000442599	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621206	144621206	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr8:144621206G>A	uc003yyd.2	-	2	360	c.331C>T	c.(331-333)CTT>TTT	p.L111F		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	111					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			TGTCTCTCAAGGACATGCTGC	0.662000													11	68					0	0	0.00010058	0	0
FAM75A5	727905	broad.mit.edu	37	9	65506493	65506494	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:65506493_65506494GG>TT	uc004adx.3	-	4	1095_1096	c.1066_1067CC>AA	c.(1066-1068)CCA>AAA	p.P356K		NM_015667	NP_056482	Q5VU36	F75A5_HUMAN	hypothetical protein LOC26165	356						integral to membrane					0						GTGCTTTTCTGGGGTCATTCGA	0.426000													9	281					0	0	6.4e-05	0	0
PCSK5	5125	broad.mit.edu	37	9	78796501	78796501	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:78796501G>A	uc004ajz.2	+	16	2729	c.2191G>A	c.(2191-2193)GAT>AAT	p.D731N	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Silent_p.R5R	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	731	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GTCATATCAGGATACCAGTAA	0.433000													5	63					0	0	0.000602214	0	0
KIAA1958	158405	broad.mit.edu	37	9	115336746	115336746	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:115336746C>T	uc004bgf.1	+	2	561	c.386C>T	c.(385-387)TCT>TTT	p.S129F	KIAA1958_uc011lwx.1_Missense_Mutation_p.S129F	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	129										skin(1)	1						AGTGAGCCCTCTGAACTGGAT	0.458000													11	63					0	0	0.00010058	0	0
TNFSF15	9966	broad.mit.edu	37	9	117552881	117552881	+	Missense_Mutation	SNP	C	T	T	rs150498686		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:117552881C>T	uc004bjh.2	-	4	723	c.607G>A	c.(607-609)GAA>AAA	p.E203K	TNFSF15_uc004bjg.2_Missense_Mutation_p.E144K	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	203	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						CTACCTACTTCGCATACAGAC	0.527000													5	33					0	0	0.000602214	0	0
TLR4	7099	broad.mit.edu	37	9	120476865	120476865	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:120476865C>T	uc004bjz.2	+	3	2750	c.2459C>T	c.(2458-2460)TCA>TTA	p.S820L	TLR4_uc004bka.2_Missense_Mutation_p.S780L|TLR4_uc004bkb.2_Missense_Mutation_p.S620L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	820	Cytoplasmic (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GATGGTAAATCATGGAATCCA	0.502000													11	86					0	0	0.000308642	0	0
DMD	1756	broad.mit.edu	37	X	31201000	31201000	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:31201000C>T	uc004dda.1	-	68	10073	c.9829G>A	c.(9829-9831)GAA>AAA	p.E3277K	DMD_uc004dcq.1_Missense_Mutation_p.E548K|DMD_uc004dcr.1_Missense_Mutation_p.E817K|DMD_uc004dcs.1_Missense_Mutation_p.E817K|DMD_uc004dct.1_Missense_Mutation_p.E817K|DMD_uc004dcu.1_Missense_Mutation_p.E817K|DMD_uc004dcv.1_Missense_Mutation_p.E817K|DMD_uc004dcw.2_Missense_Mutation_p.E1933K|DMD_uc004dcx.2_Missense_Mutation_p.E1936K|DMD_uc004dcz.2_Missense_Mutation_p.E3154K|DMD_uc004dcy.1_Missense_Mutation_p.E3273K|DMD_uc004ddb.1_Missense_Mutation_p.E3269K|DMD_uc004dcm.1_Missense_Mutation_p.E209K|DMD_uc004dcn.1_Missense_Mutation_p.E209K|DMD_uc004dco.1_Missense_Mutation_p.E209K|DMD_uc004dcp.1_Missense_Mutation_p.E209K|DMD_uc011mkb.1_Missense_Mutation_p.E209K|DMD_uc010ngm.2_Missense_Mutation_p.E209K	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3277	Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AGGGCCGCTTCGATCTCTGGC	0.527000													10	22					0	0	3.86212e-05	0	0
XAGE5	170627	broad.mit.edu	37	X	52844215	52844215	+	Nonsense_Mutation	SNP	C	G	G			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:52844215C>G	uc004drd.1	+	4	343	c.278C>G	c.(277-279)TCA>TGA	p.S93*		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	93										ovary(1)	1						CTGCCAAAATCAGAGCAATTT	0.388000													3	45					0	0	6.4e-05	0	0
TRPC5	7224	broad.mit.edu	37	X	111020090	111020090	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:111020090C>T	uc004epl.1	-	11	3292	c.2373G>A	c.(2371-2373)CGG>CGA	p.R791R		NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	791	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TGGATTTGGCCCGAGCCCCAC	0.483000													18	100					0	0	0.000132079	0	0
TRPC5	7224	broad.mit.edu	37	X	111078209	111078209	+	Silent	SNP	G	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:111078209G>T	uc004epl.1	-	7	2755	c.1836C>A	c.(1834-1836)TCC>TCA	p.S612S	TRPC5_uc004epm.1_Silent_p.S612S	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	612	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GCACTACCAGGGAGATGACAT	0.418000													8	165					1.58986e-06	2.98472e-05	3.86212e-05	1	0
SLC6A14	11254	broad.mit.edu	37	X	115576098	115576098	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:115576098C>T	uc004eqi.2	+	6	773	c.669C>T	c.(667-669)CTC>CTT	p.L223L	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	223	Extracellular (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AAGTGGCGCTCCAACGGTCAA	0.378000													10	34					0	0	6.40141e-05	0	0
STAG2	10735	broad.mit.edu	37	X	123200028	123200028	+	Silent	SNP	C	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:123200028C>T	uc004etz.3	+	21	2439	c.2100C>T	c.(2098-2100)GCC>GCT	p.A700A	STAG2_uc004eua.2_Silent_p.A700A|STAG2_uc004eub.2_Silent_p.A700A|STAG2_uc004euc.2_Silent_p.A700A|STAG2_uc004eud.2_Silent_p.A700A|STAG2_uc004eue.2_Silent_p.A700A	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	700					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						tttACAGTGCCCATGACCTTT	0.299000													12	45					0	0	6.40141e-05	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290877	141290877	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:141290877G>A	uc004fbu.1	-	3	1245	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	299	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GACCCCACAGGAATTCATAAT	0.488000										HNSCC(46;0.14)			7	39					0	0	0.000274275	0	0
PASD1	139135	broad.mit.edu	37	X	150841077	150841077	+	Silent	SNP	G	A	A			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chrX:150841077G>A	uc004fev.3	+	14	2192	c.1860G>A	c.(1858-1860)CAG>CAA	p.Q620Q		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	620						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAACAACAGCCCTCTGGCT	0.468000													6	34					0	0	0.000157383	0	0
B2M	567	broad.mit.edu	37	15	45007783	45007800	+	In_Frame_Del	DEL	GCAAGGACTGGTCTTTCT	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:45007783_45007800delGCAAGGACTGGTCTTTCT	uc001zuc.2	+	2	290_307	c.230_247delGCAAGGACTGGTCTTTCT	c.(229-249)AGCAAGGACTGGTCTTTCTAT>AAT	p.77_83SKDWSFY>N	B2M_uc010uek.1_In_Frame_Del_p.77_83SKDWSFY>N|B2M_uc010bdx.1_Intron	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	77_83	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		TTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTA	0.431													8	87	---	---	---	---					
HCN4	10021	broad.mit.edu	37	15	73660195	73660195	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr15:73660195delG	uc002avp.2	-	1	1411	c.417delC	c.(415-417)CCCfs	p.P139fs		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	139	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TGTCCTCGCCGGGGGACGCGT	0.816													2	4	---	---	---	---					
C16orf58	64755	broad.mit.edu	37	16	31519172	31519172	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr16:31519172delG	uc002eci.1	-	2	340	c.328delC	c.(328-330)CTAfs	p.L110fs	C16orf58_uc010vfq.1_Intron	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	110						integral to membrane				ovary(1)|breast(1)	2						TGGGTGGCTAGGGAGCCGGAG	0.597													2	4	---	---	---	---					
HIC1	3090	broad.mit.edu	37	17	1960405	1960407	+	In_Frame_Del	DEL	GGC	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr17:1960405_1960407delGGC	uc010cjy.2	+	2	478_480	c.478_480delGGC	c.(478-480)GGCdel	p.G167del	HIC1_uc002fty.3_In_Frame_Del_p.G148del|HIC1_uc002ftz.3_In_Frame_Del_p.G148del	NM_001098202	NP_001091672	Q14526	HIC1_HUMAN	hypermethylated in cancer 1 isoform 2	167	Poly-Gly.				multicellular organismal development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1				READ - Rectum adenocarcinoma(1115;0.236)		CCACCTGCGGggcggcggcggcg	0.645													2	4	---	---	---	---					
LMAN1	3998	broad.mit.edu	37	18	57013193	57013194	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr18:57013193_57013194insT	uc002lhz.2	-	8	944_945	c.912_913insA	c.(910-915)AAAGAGfs	p.K304fs		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	304_305	Lumenal (Potential).				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	TGGAATTCCTCTTTTTTTTTAT	0.455													7	138	---	---	---	---					
EIF2AK3	9451	broad.mit.edu	37	2	88874269	88874270	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:88874269_88874270delCT	uc002stc.3	-	13	2933_2934	c.2731_2732delAG	c.(2731-2733)AGGfs	p.R911fs		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	911	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ACACACGCTCCTCTCTCTCTCC	0.465													9	767	---	---	---	---					
CCDC148	130940	broad.mit.edu	37	2	159107283	159107284	+	Splice_Site	INS	-	T	T			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr2:159107283_159107284insT	uc002tzq.2	-	10	1514	c.1251_splice	c.e10+1	p.K417_splice	CCDC148_uc002tzr.2_Splice_Site_p.K265_splice|CCDC148_uc010foh.2_Splice_Site_p.K130_splice	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148											ovary(2)	2						AGATtttttactttttttttct	0.213													2	4	---	---	---	---					
TAP2	6891	broad.mit.edu	37	6	32797702	32797707	+	Splice_Site	DEL	GATACC	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:32797702_32797707delGATACC	uc003occ.2	-	9	1826	c.1795_splice	c.e9+1	p.D599_splice	TAP2_uc011dqf.1_Splice_Site_p.D599_splice|TAP2_uc003ocb.1_Splice_Site_p.D599_splice|TAP2_uc003ocd.2_Splice_Site_p.D599_splice	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family						antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						ATTTGTAGAAGATACCTGTGTATATT	0.466													15	154	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989414	42989419	+	In_Frame_Del	DEL	GCCGGG	-	-	rs3833662		TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr6:42989414_42989419delGCCGGG	uc003otp.1	+	1	30_35	c.22_27delGCCGGG	c.(22-27)GCCGGGdel	p.AG14del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	14_15					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TAACTAccgcgccggggccggggccg	0.529													5	7	---	---	---	---					
KANK1	23189	broad.mit.edu	37	9	738412	738414	+	In_Frame_Del	DEL	TCA	-	-			TCGA-GN-A265-06A-21D-A197-08	TCGA-GN-A265-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	36770274-b16e-4ccd-b0f6-ca70cc49632d	dd788ab5-5592-4cdf-9c05-2127d2cf6607	g.chr9:738412_738414delTCA	uc003zgl.1	+	12	4110_4112	c.3461_3463delTCA	c.(3460-3465)GTCATC>GTC	p.I1155del	KANK1_uc003zgn.1_In_Frame_Del_p.I1155del|KANK1_uc003zgs.1_In_Frame_Del_p.I997del|KANK1_uc010mgx.1_In_Frame_Del_p.I133del|KANK1_uc010mgy.1_In_Frame_Del_p.I67del|KANK1_uc003zgt.1_In_Frame_Del_p.I67del	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1155					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		CTCCGCTATGTCATCAACTTGGC	0.547													7	164	---	---	---	---					
